From 7c9f868ada88cac0a7a4c4f4cafeaa70a1dbcea6 Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Wed, 22 Nov 2023 13:42:45 +0000
Subject: [PATCH 1/3] Add on-import deprecation warning

---
 src/cellfinder_core/__init__.py | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/src/cellfinder_core/__init__.py b/src/cellfinder_core/__init__.py
index 746b2d2b..81eb7d42 100644
--- a/src/cellfinder_core/__init__.py
+++ b/src/cellfinder_core/__init__.py
@@ -1,3 +1,10 @@
+from warnings import warn
+
+warn(
+    f"cellfinder-core has merged with it's napari plugin and is now available as a combined package. To remain up to date, please install cellfinder: https://github.com/brainglobe/cellfinder",
+    DeprecationWarning,
+)
+
 from importlib.metadata import PackageNotFoundError, version
 
 try:

From d9e1c4184377dc51afeefb32c94e7184a8db09b5 Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Wed, 22 Nov 2023 13:45:35 +0000
Subject: [PATCH 2/3] Add note in README about deprecation

---
 README.md | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/README.md b/README.md
index cf505ceb..e90b48c9 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,12 @@
+# This package has moved!
+
+`cellfinder-core` has merged with it's napari plugin and is now available as a [single package called `cellfinder`](https://github.com/brainglobe/cellfinder).
+We recommend you uninstall `cellfinder-core` and instead use the functionality provided in the `cellfinder` package.
+
+These changes are part of our [wider restructuring](https://brainglobe.info/blog/version1/version_1_announcement.html) of the BrainGlobe suite of tools and analysis pipelines, which you can [keep up to date with on our blog](https://brainglobe.info/blog/index.html).
+
+---
+
 [![Python Version](https://img.shields.io/pypi/pyversions/cellfinder-core.svg)](https://pypi.org/project/cellfinder-core)
 [![PyPI](https://img.shields.io/pypi/v/cellfinder-core.svg)](https://pypi.org/project/cellfinder-core)
 [![Downloads](https://pepy.tech/badge/cellfinder-core)](https://pepy.tech/project/cellfinder-core)

From bfc48806762f48b84a048b14e74b5ae098018940 Mon Sep 17 00:00:00 2001
From: willGraham01 <1willgraham@gmail.com>
Date: Wed, 22 Nov 2023 14:01:11 +0000
Subject: [PATCH 3/3] pytest to ignore deprecaton warning on import

---
 tox.ini | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tox.ini b/tox.ini
index 3f00afe3..00811f0b 100644
--- a/tox.ini
+++ b/tox.ini
@@ -10,7 +10,7 @@ python =
     3.10: py310
 
 [testenv]
-commands = python -m pytest -v --color=yes
+commands = python -m pytest -v --color=yes -W ignore::DeprecationWarning
 deps =
     pytest
     pytest-cov