From 38f3b74563bff657e54d372540aba3b6625e9172 Mon Sep 17 00:00:00 2001 From: Adam Tyson Date: Thu, 6 Jun 2024 16:28:27 +0100 Subject: [PATCH] remove references to nrrd files --- docs/source/documentation/brainglobe-utils/image_io.md | 8 +------- .../brainrender/usage/using-your-data/index.md | 4 ++-- 2 files changed, 3 insertions(+), 9 deletions(-) diff --git a/docs/source/documentation/brainglobe-utils/image_io.md b/docs/source/documentation/brainglobe-utils/image_io.md index b7d82407..a02a75ae 100644 --- a/docs/source/documentation/brainglobe-utils/image_io.md +++ b/docs/source/documentation/brainglobe-utils/image_io.md @@ -1,7 +1,7 @@ # Image IO submodule The image IO submodule provides various options to load and save image data. -It supports common formats like `tiff`, `nrrd` and `nifti`. +It supports common formats like `tiff` and `nifti`. ## Installation @@ -29,9 +29,6 @@ load.load_img_stack('mydata.tif', x_scaling_factor=1, y_scaling_factor=1, z_scal # directory containing a sequence of 2D tiffs load.load_from_folder('/path/to/dir') -# nrrd -load.load_nrrd('mydata.nrrd') - # nifti load.load_nii('mydata.nii') ``` @@ -65,9 +62,6 @@ save.to_tiff(my_array, 'mydata.tif') # directory containing a sequence of 2D tiffs save.to_tiffs(my_array, '/path/to/dir/prefix') -# nrrd -save.to_nrrd(my_array, 'mydata.nrrd') - # nifti save.to_nii(my_array, 'mydata.nii') ``` diff --git a/docs/source/documentation/brainrender/usage/using-your-data/index.md b/docs/source/documentation/brainrender/usage/using-your-data/index.md index cd175512..d9cac558 100644 --- a/docs/source/documentation/brainrender/usage/using-your-data/index.md +++ b/docs/source/documentation/brainrender/usage/using-your-data/index.md @@ -40,8 +40,8 @@ and process neuron morphology data. Given the popularity of python for scientific research, there are tools to load almost all data formats. These include numpy to load `.npy` files, `tiffiles` for `.tiff` etc. BrainGlobe provides a general purpose software tool for -loading and saving image data ([image_io](/documentation/brainglobe-utils/image_io)). You can use `image_io` to load most types of -data (e.g. `.nrrd`, `.tiff`, `.nifti` etc), e.g.: +loading and saving image data ([image_io](/documentation/brainglobe-utils/image_io)). You can use `image_io` to load many types of +data (e.g. `.tiff`, `.nifti` etc), e.g.: ```python from brainglobe_utils.image_io import load