test_and_deploy.yml

name: tests

on:
  push:
    branches:
      - "main"
    tags:
      - "*"
  pull_request:
  workflow_dispatch:
    inputs:
      coredev:
        description: 'Tests with development version of cellfinder-core?'
        required: true
        default: 'false'

env:
  REGISTRY: ghcr.io
  IMAGE_NAME: ${{ github.repository }}

jobs:
  linting:
    name: Linting
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/lint@v2

  manifest:
    name: Check manifest
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/check_manifest@v2

  test:
    needs: [linting, manifest]
    name: ${{ matrix.os }} py${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    env:
      INPUT_COREDEV: ${{ github.event.inputs.coredev }}
    strategy:
      fail-fast: false
      matrix:
        # Run tests on ubuntu across all supported versions
        python-version: ["3.9", "3.10"]
        os: [ubuntu-latest]
        # Include at least one MacOS and Windows test
        include:
        - os: macos-latest
          python-version: "3.10"
        - os: windows-latest
          python-version: "3.10"
    steps:
      - uses: neuroinformatics-unit/actions/test@v2
        with:
          python-version: ${{ matrix.python-version }}

  build_sdist_wheels:
    name: Build source distribution
    needs: [test]
    if: github.event_name == 'push' && github.ref_type == 'tag'
    runs-on: ubuntu-latest
    steps:
      - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2

  upload_all:
    name: Publish build distributions
    needs: [build_sdist_wheels]
    runs-on: ubuntu-latest
    if: github.event_name == 'push' && github.ref_type == 'tag'
    steps:
      - uses: actions/download-artifact@v3
        with:
          name: artifact
          path: dist
      - uses: pypa/gh-action-pypi-publish@v1.5.0
        with:
          user: __token__
          password: ${{ secrets.TWINE_API_KEY }}