From 6f12a69700272622ed84fafb50f99d3df3f676c6 Mon Sep 17 00:00:00 2001
From: Bradford Powell <bpow@drpowell.org>
Date: Fri, 22 May 2020 13:05:21 -0400
Subject: [PATCH] Allow both -R/-r and -F to be used

There doesn't seem to be any reason not to allow analysis from a
freq_file while also restricting to certain regions.

This also removes the auto-usage of the frq_file as the regions
in bcf_sr, which works around some unused SNPs as described in #29
---
 kin.cpp | 10 ----------
 1 file changed, 10 deletions(-)

diff --git a/kin.cpp b/kin.cpp
index 78e3af8..d3844de 100644
--- a/kin.cpp
+++ b/kin.cpp
@@ -324,16 +324,6 @@ int kin_main(int argc, char* argv[])
 	cerr<<"ERROR: -t/-T and -r/-R are incompatible"<<endl;
 	exit(1);
     }
-    if(!frq_file.empty() && !regions.empty()) 
-    {
-	cerr<<"ERROR: -F and -R/-r are incompatible!"<<endl;
-	exit(1);
-    } 
-    if(!frq_file.empty() && regions.empty())
-    {
-	regions=frq_file;
-	regions_is_file=true;
-    }
     if(frq_file.empty())  
     {
 	cerr<<"No frequency VCF provided (-F). Allele frequencies will be estimated from the data."<<endl;