From 3ac5625894838e5a12980a92f79f7a9fcd895dfb Mon Sep 17 00:00:00 2001
From: boasvdp <boasvdp@gmail.com>
Date: Fri, 26 Apr 2024 10:42:11 +0200
Subject: [PATCH] ci: fix ref path

---
 tests/test_e2e.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/test_e2e.sh b/tests/test_e2e.sh
index dd0564c..602d3cf 100644
--- a/tests/test_e2e.sh
+++ b/tests/test_e2e.sh
@@ -25,7 +25,7 @@ python -m pip install .
 assembly_snptyper \
     --list_input "$TEST_DATA_DIR"/test_genomes.txt \
     --vcf data/M1UK.vcf \
-    --reference "$TEST_DATA_DIR"/MGAS5005.fa \
+    --reference data/MGAS5005.fa \
     -p 2 > "$TEST_DATA_DIR"/test_output.txt
 
 # Check the output