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Handle bad index, unsorted BAM #5

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blankenberg opened this issue Aug 13, 2019 · 0 comments
Open

Handle bad index, unsorted BAM #5

blankenberg opened this issue Aug 13, 2019 · 0 comments

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@blankenberg
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Currently a null index results in:

BAM Index appears to be malformed: '\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00\x00'.

Should handle this better. Detect and fail unless coordinate sorted?

xref #3, #4
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@blankenberg