You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Invent a new output type like variant_details. Rather than making a comma-separated string of VF and DP for common mutations, add a new column for each duplicate. Only permits 1 sample per row.
Modify config to support new format and distinguish between variant calls. "source" will be re-named "format" to clearly identify the parsing module that should be used. The new value of "source" will be identical to "format," unless a sample has multiple VCFs from the same "format." In this case, "source" will have distinguishing values appended to it, i.e. [samtools.a, samtools.b, samtools.c] while "format" would be [samtools, samtools, samtools]. These "source" values will be used to name the specific columns in the new output mode.
The text was updated successfully, but these errors were encountered:
…f the code accordingly. source is renamed to format, and the new value of source is used to determine column names in output. the output value source has been renamed to fn for clarity.
Invent a new output type like variant_details. Rather than making a comma-separated string of VF and DP for common mutations, add a new column for each duplicate. Only permits 1 sample per row.
Modify config to support new format and distinguish between variant calls. "source" will be re-named "format" to clearly identify the parsing module that should be used. The new value of "source" will be identical to "format," unless a sample has multiple VCFs from the same "format." In this case, "source" will have distinguishing values appended to it, i.e. [samtools.a, samtools.b, samtools.c] while "format" would be [samtools, samtools, samtools]. These "source" values will be used to name the specific columns in the new output mode.
The text was updated successfully, but these errors were encountered: