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Fix R CMD check errors, warnings, notes (#1)
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* Build fixes

* roxygen2md

* Use GitHub action for checks
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jemus42 authored Nov 5, 2024
1 parent e53edbd commit 50da32c
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2 changes: 2 additions & 0 deletions .Rbuildignore
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^.*\.Rproj$
^\.Rproj\.user$
^LICENSE\.md$
^\.github$
1 change: 1 addition & 0 deletions .github/.gitignore
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*.html
49 changes: 49 additions & 0 deletions .github/workflows/R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
branches: [main, master]

name: R-CMD-check

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
38 changes: 19 additions & 19 deletions DESCRIPTION
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Package: SRSim
Type: Package
Package: SRSim
Title: Spontaneous Reporting Simulator (SRSim)
Version: 0.1
Date: 2018-01-18
Author: Louis Dijkstra [aut, cre], Marco Garling [ctb]
Maintainer: Louis Dijkstra <[email protected]>
Description: A package for simulating spontaneous reporting
data as used in the field of pharmacovigilance.
Description: A package for simulating spontaneous reporting data as used
in the field of pharmacovigilance.
License: GPL (>= 3)
URL: https://github.com/bips-hb/srsim
BugReports: https://github.com/bips-hb/srsim/issues
Depends:
R (>= 3.2.3),
Rcpp,
RcppArmadillo,
RcppProgress,
dplyr,
tidyr,
mvtnorm,
corpcor,
pcalg,
Rgraphviz
LinkingTo: Rcpp, RcppArmadillo, RcppProgress
License: GPL-3
R (>= 3.2.3)
Imports:
corpcor,
igraph,
Rcpp,
RcppArmadillo,
tibble
LinkingTo:
Rcpp,
RcppArmadillo,
RcppProgress
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
URL: https://github.com/bips-hb/srsim
BugReports: https://github.com/bips-hb/srsim/issues
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
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