Changelog

version 2.3.0

Minor changes to tasks that increase miniwdl compatibility.

version 2.2.0

Update picard to version 2.23.8, samtools to version 1.11.

version 2.1.0

Use the latest versions of samtools and picard by default.
Add a reports output for use in downstream pipelines.
Move collectAlignmentSummaryMetrics & meanQualityByCycle to top level workflow so they can be set to false for TALON-WDL pipeline.
Tasks were updated to contain the time_minutes runtime attribute and associated timeMinutes input, describing the maximum time the task will take to run.

version 2.0.0

Add proper copyright headers to WDL files. So the free software license is clear to end users who wish to adapt and modify.
Remove complex structs from the input.
Added inputs overview to the docs.
Added parameter_meta.
Added wdl-aid to linting.
Added miniwdl to linting.

version 1.2.0

Use the latest version of the tasks repository.

version 1.1.0

Update tasks so they pass the correct memory requirements to the execution engine. Memory requirements are set on a per-task (not per-core) basis.

version 1.0.0

Update documentation to reflect latest changes.
Picard: Use version 2.20.5 of the biocontainer as this includes the R dependency.