text_mining_targeted_association data and parser update

[edgargaticaCU]

API URL: https://biothings.ncats.io/text_mining_targeted_association
Parser GitHub URL: https://github.com/UCDenver-ccp/text_mining_targeted_association
Git branch/commit: Master 969da7c
No. Documents: 1,476,108
Structure of documents is unchanged, but the treats predicate has been replaced with treats_or_applied_or_studied_to_treat per the treats refactor.

[everaldorodrigo]

Hello @edgargaticaCU,

The parser plugin was updated to the last version. Also, the latest data was released to the CI environment.

Let me know if I can proceed and release the data to the Test and Production environment.

[colleenXu]

@everaldorodrigo This is a special situation where we don't want to deploy right away to Test/Production. We'll want to follow the schedule set by Translator for the "treats refactor" feature.

Right now, they only want this on CI.

[colleenXu]

@edgargaticaCU and I noticed an issue where we expected the association.edge_label value to update, aka for there to be records for https://biothings.ci.transltr.io/text_mining_targeted_association/query?q=association.edge_label:%22treats_or_applied_or_studied_to_treat%22. But there aren't any.

Instead the records seem to still be using the old label: https://biothings.ci.transltr.io/text_mining_targeted_association/query?q=association.edge_label:%22treats%22

It's not clear if there's an issue with the parser or with the upload/deployment/update of the API

[colleenXu]

Update: this update is only deployed on the CI instance (https://biothings.ci.transltr.io/text_mining_targeted_association).

When the "treats refactor"/biolink-model-4-update moves to Test, @edgargaticaCU should request that this be deployed on Test.