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MNVs (multi-nucleotide variants) in dbSNP missing start, end positions #138

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erikyao opened this issue Dec 9, 2021 · 0 comments
Open

MNVs (multi-nucleotide variants) in dbSNP missing start, end positions #138

erikyao opened this issue Dec 9, 2021 · 0 comments
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erikyao commented Dec 9, 2021 •
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There are 5 variant types (or vartype's in our code), in dbSNP datasource, a.k.a. SNP classes as listed in Searching dbSNP in Entrez:

"del", "delins", "ins", "mnv", and "snv".

Currently our get_pos_start_end() function failed to handle "mnv" type and therefore start, end positions are missing in those "mnv" documents.
@erikyao erikyao self-assigned this Dec 9, 2021
@erikyao erikyao changed the title "mnv" in dbSNP missing start, end positions MNVs (multi-nucleotide variants) in dbSNP missing start, end positions Dec 9, 2021
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