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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(emm_basis,MCMCglmm_seaMass)
S3method(recover_data,MCMCglmm_seaMass)
export("runs<-")
export(StatYlfdr)
export(add_Navarro_spikein_truth)
export(add_seaMass_spikein_truth)
export(delta_control)
export(dinaka)
export(dist_inaka)
export(dist_lst)
export(dist_normal)
export(dist_normal_robust)
export(dist_samples_inaka)
export(dist_samples_lst)
export(dist_samples_lst_ash)
export(dist_samples_normal)
export(dist_samples_robust_normal)
export(dist_sf_with_fixed_df1_fitdistrplus)
export(dlst)
export(import_DIANN)
export(import_MSqRob)
export(import_MSstats)
export(import_MaxQuant)
export(import_MaxQuant_evidence0)
export(import_MaxQuant_peptides)
export(import_OpenSWATH)
export(import_Progenesis)
export(import_ProteinPilot)
export(import_ProteomeDiscoverer)
export(limits_dists)
export(new_assay_design)
export(open_delta)
export(open_sigma)
export(open_theta)
export(pinaka)
export(plst)
export(qinaka)
export(qlst)
export(rhat)
export(rinaka)
export(rlst)
export(runs)
export(schedule_local)
export(schedule_pbs)
export(schedule_sge)
export(schedule_slurm)
export(seaMass_delta)
export(seaMass_sigma)
export(seaMass_theta)
export(sigma_control)
export(squeeze_stdev)
export(squeeze_stdev_limma)
export(stat_ylfdr)
export(theta_control)
exportMethods(assay_components)
exportMethods(assay_design)
exportMethods(assay_deviations)
exportMethods(assay_groups)
exportMethods(assay_means)
exportMethods(assay_stdevs)
exportMethods(assemble_report)
exportMethods(blocks)
exportMethods(component_deviations)
exportMethods(component_deviations_de)
exportMethods(component_deviations_fdr)
exportMethods(component_means)
exportMethods(component_stdevs)
exportMethods(components)
exportMethods(container)
exportMethods(control)
exportMethods(dea_MCMCglmm)
exportMethods(del)
exportMethods(fdr_ash)
exportMethods(filepath)
exportMethods(generate_markdown)
exportMethods(group_means)
exportMethods(group_quants)
exportMethods(group_quants_de)
exportMethods(group_quants_fdr)
exportMethods(group_standards)
exportMethods(groups)
exportMethods(imported_data)
exportMethods(lingofy)
exportMethods(measurement_means)
exportMethods(measurement_stdevs)
exportMethods(measurements)
exportMethods(name)
exportMethods(normalise_median)
exportMethods(normalise_quantile)
exportMethods(normalise_theta)
exportMethods(open_deltas)
exportMethods(open_thetas)
exportMethods(parent)
exportMethods(plot_assay_means)
exportMethods(plot_assay_stdevs)
exportMethods(plot_component_deviations)
exportMethods(plot_component_means)
exportMethods(plot_component_stdevs)
exportMethods(plot_dists)
exportMethods(plot_fdr)
exportMethods(plot_group_means)
exportMethods(plot_group_quants)
exportMethods(plot_group_quants_de)
exportMethods(plot_group_quants_fdr)
exportMethods(plot_group_standards)
exportMethods(plot_measurement_means)
exportMethods(plot_measurement_stdevs)
exportMethods(plot_pr)
exportMethods(plot_robust_pca)
exportMethods(plot_volcano)
exportMethods(priors)
exportMethods(read)
exportMethods(render_markdown)
exportMethods(report)
exportMethods(robust_pca)
exportMethods(root)
exportMethods(run)
exportMethods(standardise_group_quants)
exportMethods(summary)
exportMethods(timings)
exportMethods(top_groups)
import(data.table)
import(doRNG)
import(emmeans)
import(foreach)