Bayesian mixed-effects model and uncertainty propagation for mass spectrometry proteomics, achieving sensitive protein-level quantification and differential expression analysis.
BayesProt is now seaMass-delta, an R package supporting labelled, unlabelled and DIA datasets. This BayesProt repository hosts only the legacy BayesProt tool supporting the following papers:
- Kassab et al, Molecular Metabolism 2019, 107-119, [https://doi.org/10.1016/j.molmet.2019.08.003].
- Xu et al, Nature Communications Biology 2019, 2:43, [https://doi.org/10.1038/s42003-018-0254-9].
- Freeman et al, Diabetes 2015, 228-38, [https://doi.org/10.2337/db15-0835].