diff --git a/.github/actions/setup-poetry-env/action.yml b/.github/actions/setup-poetry-env/action.yml index 78817047..f372f776 100644 --- a/.github/actions/setup-poetry-env/action.yml +++ b/.github/actions/setup-poetry-env/action.yml @@ -29,14 +29,7 @@ runs: run: poetry config virtualenvs.in-project true shell: bash - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ inputs.python-version }}-${{ hashFiles('poetry.lock') }} - - name: Install dependencies if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - run: poetry install --no-interaction --with bngl,cellml,lems,neuroml,sbml,simularium,escher,containers,logging,rba,smoldyn + run: poetry install --no-interaction --with bngl,cellml,lems,neuroml,sbml,simularium,escher,containers,logging,smoldyn shell: bash \ No newline at end of file diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index dba6c36b..3441b97a 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -26,7 +26,7 @@ jobs: runs-on: ubuntu-22.04 strategy: matrix: - python-version: [ "3.10" ] + python-version: [ "3.10", "3.11" ] fail-fast: false defaults: run: diff --git a/biosimulators_utils/_version.py b/biosimulators_utils/_version.py index 4da0d6e8..7fd229a3 100644 --- a/biosimulators_utils/_version.py +++ b/biosimulators_utils/_version.py @@ -1 +1 @@ -__version__ = '0.1.189' +__version__ = '0.2.0' diff --git a/poetry.lock b/poetry.lock index 8fd45e0a..4399b03c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. [[package]] name = "accessible-pygments" @@ -432,13 +432,13 @@ humanfriendly = ">=8.0" [[package]] name = "cattrs" -version = "24.1.0" +version = "24.1.1" description = "Composable complex class support for attrs and dataclasses." optional = false python-versions = ">=3.8" files = [ - {file = "cattrs-24.1.0-py3-none-any.whl", hash = "sha256:043bb8af72596432a7df63abcff0055ac0f198a4d2e95af8db5a936a7074a761"}, - {file = "cattrs-24.1.0.tar.gz", hash = "sha256:8274f18b253bf7674a43da851e3096370d67088165d23138b04a1c04c8eaf48e"}, + {file = "cattrs-24.1.1-py3-none-any.whl", hash = "sha256:ec8ce8fdc725de9d07547cd616f968670687c6fa7a2e263b088370c46d834d97"}, + {file = "cattrs-24.1.1.tar.gz", hash = "sha256:16e94a13f9aaf6438bd5be5df521e072b1b00481b4cf807bcb1acbd49f814c08"}, ] [package.dependencies] @@ -1419,15 +1419,18 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve [[package]] name = "idna" -version = "3.8" +version = "3.10" description = "Internationalized Domain Names in Applications (IDNA)" optional = false python-versions = ">=3.6" files = [ - {file = "idna-3.8-py3-none-any.whl", hash = "sha256:050b4e5baadcd44d760cedbd2b8e639f2ff89bbc7a5730fcc662954303377aac"}, - {file = "idna-3.8.tar.gz", hash = "sha256:d838c2c0ed6fced7693d5e8ab8e734d5f8fda53a039c0164afb0b82e771e3603"}, + {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"}, + {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"}, ] +[package.extras] +all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2)"] + [[package]] name = "imagesize" version = "1.4.1" @@ -1652,13 +1655,13 @@ referencing = ">=0.31.0" [[package]] name = "jupyter-client" -version = "8.6.2" +version = "8.6.3" description = "Jupyter protocol implementation and client libraries" optional = false python-versions = ">=3.8" files = [ - {file = "jupyter_client-8.6.2-py3-none-any.whl", hash = "sha256:50cbc5c66fd1b8f65ecb66bc490ab73217993632809b6e505687de18e9dea39f"}, - {file = "jupyter_client-8.6.2.tar.gz", hash = "sha256:2bda14d55ee5ba58552a8c53ae43d215ad9868853489213f37da060ced54d8df"}, + {file = "jupyter_client-8.6.3-py3-none-any.whl", hash = "sha256:e8a19cc986cc45905ac3362915f410f3af85424b4c0905e94fa5f2cb08e8f23f"}, + {file = "jupyter_client-8.6.3.tar.gz", hash = "sha256:35b3a0947c4a6e9d589eb97d7d4cd5e90f910ee73101611f01283732bd6d9419"}, ] [package.dependencies] @@ -2031,13 +2034,13 @@ files = [ [[package]] name = "libneuroml" -version = "0.6.4" +version = "0.6.5" description = "A Python library for working with NeuroML descriptions of neuronal models" optional = false python-versions = "*" files = [ - {file = "libNeuroML-0.6.4-py3-none-any.whl", hash = "sha256:71b492dc835b1655b5f9c1d967db8549e905fd45aa0a4a6b7a1b2b8e075c4e6d"}, - {file = "libneuroml-0.6.4.tar.gz", hash = "sha256:549b99aebd219ebdc9f5e1ab57b6258930750df5d6b7747b118b385360e3c30a"}, + {file = "libNeuroML-0.6.5-py3-none-any.whl", hash = "sha256:d62e079414ea484f76f45c7b682ebfa3fff288da6262e1a9672616fc8bb8ea58"}, + {file = "libneuroml-0.6.5.tar.gz", hash = "sha256:f54fecd1472069a72a0869714e98f0cf185e7a64c449ead86db627bb4118ece5"}, ] [package.dependencies] @@ -2467,67 +2470,75 @@ tests = ["pytest (>=4.6)"] [[package]] name = "msgpack" -version = "1.0.8" +version = "1.1.0" description = "MessagePack serializer" optional = false python-versions = ">=3.8" files = [ - {file = "msgpack-1.0.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:505fe3d03856ac7d215dbe005414bc28505d26f0c128906037e66d98c4e95868"}, - {file = "msgpack-1.0.8-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e6b7842518a63a9f17107eb176320960ec095a8ee3b4420b5f688e24bf50c53c"}, - {file = "msgpack-1.0.8-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:376081f471a2ef24828b83a641a02c575d6103a3ad7fd7dade5486cad10ea659"}, - {file = "msgpack-1.0.8-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5e390971d082dba073c05dbd56322427d3280b7cc8b53484c9377adfbae67dc2"}, - {file = "msgpack-1.0.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:00e073efcba9ea99db5acef3959efa45b52bc67b61b00823d2a1a6944bf45982"}, - {file = "msgpack-1.0.8-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:82d92c773fbc6942a7a8b520d22c11cfc8fd83bba86116bfcf962c2f5c2ecdaa"}, - {file = "msgpack-1.0.8-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:9ee32dcb8e531adae1f1ca568822e9b3a738369b3b686d1477cbc643c4a9c128"}, - {file = "msgpack-1.0.8-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:e3aa7e51d738e0ec0afbed661261513b38b3014754c9459508399baf14ae0c9d"}, - {file = "msgpack-1.0.8-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:69284049d07fce531c17404fcba2bb1df472bc2dcdac642ae71a2d079d950653"}, - {file = "msgpack-1.0.8-cp310-cp310-win32.whl", hash = "sha256:13577ec9e247f8741c84d06b9ece5f654920d8365a4b636ce0e44f15e07ec693"}, - {file = "msgpack-1.0.8-cp310-cp310-win_amd64.whl", hash = "sha256:e532dbd6ddfe13946de050d7474e3f5fb6ec774fbb1a188aaf469b08cf04189a"}, - {file = "msgpack-1.0.8-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:9517004e21664f2b5a5fd6333b0731b9cf0817403a941b393d89a2f1dc2bd836"}, - {file = "msgpack-1.0.8-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:d16a786905034e7e34098634b184a7d81f91d4c3d246edc6bd7aefb2fd8ea6ad"}, - {file = "msgpack-1.0.8-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:e2872993e209f7ed04d963e4b4fbae72d034844ec66bc4ca403329db2074377b"}, - {file = "msgpack-1.0.8-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5c330eace3dd100bdb54b5653b966de7f51c26ec4a7d4e87132d9b4f738220ba"}, - {file = "msgpack-1.0.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:83b5c044f3eff2a6534768ccfd50425939e7a8b5cf9a7261c385de1e20dcfc85"}, - {file = "msgpack-1.0.8-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:1876b0b653a808fcd50123b953af170c535027bf1d053b59790eebb0aeb38950"}, - {file = "msgpack-1.0.8-cp311-cp311-musllinux_1_1_aarch64.whl", hash = "sha256:dfe1f0f0ed5785c187144c46a292b8c34c1295c01da12e10ccddfc16def4448a"}, - {file = "msgpack-1.0.8-cp311-cp311-musllinux_1_1_i686.whl", hash = "sha256:3528807cbbb7f315bb81959d5961855e7ba52aa60a3097151cb21956fbc7502b"}, - {file = "msgpack-1.0.8-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:e2f879ab92ce502a1e65fce390eab619774dda6a6ff719718069ac94084098ce"}, - {file = "msgpack-1.0.8-cp311-cp311-win32.whl", hash = "sha256:26ee97a8261e6e35885c2ecd2fd4a6d38252246f94a2aec23665a4e66d066305"}, - {file = "msgpack-1.0.8-cp311-cp311-win_amd64.whl", hash = "sha256:eadb9f826c138e6cf3c49d6f8de88225a3c0ab181a9b4ba792e006e5292d150e"}, - {file = "msgpack-1.0.8-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:114be227f5213ef8b215c22dde19532f5da9652e56e8ce969bf0a26d7c419fee"}, - {file = "msgpack-1.0.8-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:d661dc4785affa9d0edfdd1e59ec056a58b3dbb9f196fa43587f3ddac654ac7b"}, - {file = "msgpack-1.0.8-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:d56fd9f1f1cdc8227d7b7918f55091349741904d9520c65f0139a9755952c9e8"}, - {file = "msgpack-1.0.8-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0726c282d188e204281ebd8de31724b7d749adebc086873a59efb8cf7ae27df3"}, - {file = "msgpack-1.0.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8db8e423192303ed77cff4dce3a4b88dbfaf43979d280181558af5e2c3c71afc"}, - {file = "msgpack-1.0.8-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:99881222f4a8c2f641f25703963a5cefb076adffd959e0558dc9f803a52d6a58"}, - {file = "msgpack-1.0.8-cp312-cp312-musllinux_1_1_aarch64.whl", hash = "sha256:b5505774ea2a73a86ea176e8a9a4a7c8bf5d521050f0f6f8426afe798689243f"}, - {file = "msgpack-1.0.8-cp312-cp312-musllinux_1_1_i686.whl", hash = "sha256:ef254a06bcea461e65ff0373d8a0dd1ed3aa004af48839f002a0c994a6f72d04"}, - {file = "msgpack-1.0.8-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:e1dd7839443592d00e96db831eddb4111a2a81a46b028f0facd60a09ebbdd543"}, - {file = "msgpack-1.0.8-cp312-cp312-win32.whl", hash = "sha256:64d0fcd436c5683fdd7c907eeae5e2cbb5eb872fafbc03a43609d7941840995c"}, - {file = "msgpack-1.0.8-cp312-cp312-win_amd64.whl", hash = "sha256:74398a4cf19de42e1498368c36eed45d9528f5fd0155241e82c4082b7e16cffd"}, - {file = "msgpack-1.0.8-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:0ceea77719d45c839fd73abcb190b8390412a890df2f83fb8cf49b2a4b5c2f40"}, - {file = "msgpack-1.0.8-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:1ab0bbcd4d1f7b6991ee7c753655b481c50084294218de69365f8f1970d4c151"}, - {file = "msgpack-1.0.8-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:1cce488457370ffd1f953846f82323cb6b2ad2190987cd4d70b2713e17268d24"}, - {file = "msgpack-1.0.8-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3923a1778f7e5ef31865893fdca12a8d7dc03a44b33e2a5f3295416314c09f5d"}, - {file = "msgpack-1.0.8-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a22e47578b30a3e199ab067a4d43d790249b3c0587d9a771921f86250c8435db"}, - {file = "msgpack-1.0.8-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:bd739c9251d01e0279ce729e37b39d49a08c0420d3fee7f2a4968c0576678f77"}, - {file = "msgpack-1.0.8-cp38-cp38-musllinux_1_1_aarch64.whl", hash = "sha256:d3420522057ebab1728b21ad473aa950026d07cb09da41103f8e597dfbfaeb13"}, - {file = "msgpack-1.0.8-cp38-cp38-musllinux_1_1_i686.whl", hash = "sha256:5845fdf5e5d5b78a49b826fcdc0eb2e2aa7191980e3d2cfd2a30303a74f212e2"}, - {file = "msgpack-1.0.8-cp38-cp38-musllinux_1_1_x86_64.whl", hash = "sha256:6a0e76621f6e1f908ae52860bdcb58e1ca85231a9b0545e64509c931dd34275a"}, - {file = "msgpack-1.0.8-cp38-cp38-win32.whl", hash = "sha256:374a8e88ddab84b9ada695d255679fb99c53513c0a51778796fcf0944d6c789c"}, - {file = "msgpack-1.0.8-cp38-cp38-win_amd64.whl", hash = "sha256:f3709997b228685fe53e8c433e2df9f0cdb5f4542bd5114ed17ac3c0129b0480"}, - {file = "msgpack-1.0.8-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:f51bab98d52739c50c56658cc303f190785f9a2cd97b823357e7aeae54c8f68a"}, - {file = "msgpack-1.0.8-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:73ee792784d48aa338bba28063e19a27e8d989344f34aad14ea6e1b9bd83f596"}, - {file = "msgpack-1.0.8-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:f9904e24646570539a8950400602d66d2b2c492b9010ea7e965025cb71d0c86d"}, - {file = "msgpack-1.0.8-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e75753aeda0ddc4c28dce4c32ba2f6ec30b1b02f6c0b14e547841ba5b24f753f"}, - {file = "msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5dbf059fb4b7c240c873c1245ee112505be27497e90f7c6591261c7d3c3a8228"}, - {file = "msgpack-1.0.8-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:4916727e31c28be8beaf11cf117d6f6f188dcc36daae4e851fee88646f5b6b18"}, - {file = "msgpack-1.0.8-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:7938111ed1358f536daf311be244f34df7bf3cdedb3ed883787aca97778b28d8"}, - {file = "msgpack-1.0.8-cp39-cp39-musllinux_1_1_i686.whl", hash = "sha256:493c5c5e44b06d6c9268ce21b302c9ca055c1fd3484c25ba41d34476c76ee746"}, - {file = "msgpack-1.0.8-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:5fbb160554e319f7b22ecf530a80a3ff496d38e8e07ae763b9e82fadfe96f273"}, - {file = "msgpack-1.0.8-cp39-cp39-win32.whl", hash = "sha256:f9af38a89b6a5c04b7d18c492c8ccf2aee7048aff1ce8437c4683bb5a1df893d"}, - {file = "msgpack-1.0.8-cp39-cp39-win_amd64.whl", hash = "sha256:ed59dd52075f8fc91da6053b12e8c89e37aa043f8986efd89e61fae69dc1b011"}, - {file = "msgpack-1.0.8.tar.gz", hash = "sha256:95c02b0e27e706e48d0e5426d1710ca78e0f0628d6e89d5b5a5b91a5f12274f3"}, + {file = "msgpack-1.1.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7ad442d527a7e358a469faf43fda45aaf4ac3249c8310a82f0ccff9164e5dccd"}, + {file = "msgpack-1.1.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:74bed8f63f8f14d75eec75cf3d04ad581da6b914001b474a5d3cd3372c8cc27d"}, + {file = "msgpack-1.1.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:914571a2a5b4e7606997e169f64ce53a8b1e06f2cf2c3a7273aa106236d43dd5"}, + {file = "msgpack-1.1.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c921af52214dcbb75e6bdf6a661b23c3e6417f00c603dd2070bccb5c3ef499f5"}, + {file = "msgpack-1.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d8ce0b22b890be5d252de90d0e0d119f363012027cf256185fc3d474c44b1b9e"}, + {file = "msgpack-1.1.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:73322a6cc57fcee3c0c57c4463d828e9428275fb85a27aa2aa1a92fdc42afd7b"}, + {file = "msgpack-1.1.0-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:e1f3c3d21f7cf67bcf2da8e494d30a75e4cf60041d98b3f79875afb5b96f3a3f"}, + {file = "msgpack-1.1.0-cp310-cp310-musllinux_1_2_i686.whl", hash = "sha256:64fc9068d701233effd61b19efb1485587560b66fe57b3e50d29c5d78e7fef68"}, + {file = "msgpack-1.1.0-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:42f754515e0f683f9c79210a5d1cad631ec3d06cea5172214d2176a42e67e19b"}, + {file = "msgpack-1.1.0-cp310-cp310-win32.whl", hash = "sha256:3df7e6b05571b3814361e8464f9304c42d2196808e0119f55d0d3e62cd5ea044"}, + {file = "msgpack-1.1.0-cp310-cp310-win_amd64.whl", hash = "sha256:685ec345eefc757a7c8af44a3032734a739f8c45d1b0ac45efc5d8977aa4720f"}, + {file = "msgpack-1.1.0-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:3d364a55082fb2a7416f6c63ae383fbd903adb5a6cf78c5b96cc6316dc1cedc7"}, + {file = "msgpack-1.1.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:79ec007767b9b56860e0372085f8504db5d06bd6a327a335449508bbee9648fa"}, + {file = "msgpack-1.1.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:6ad622bf7756d5a497d5b6836e7fc3752e2dd6f4c648e24b1803f6048596f701"}, + {file = "msgpack-1.1.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8e59bca908d9ca0de3dc8684f21ebf9a690fe47b6be93236eb40b99af28b6ea6"}, + {file = "msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5e1da8f11a3dd397f0a32c76165cf0c4eb95b31013a94f6ecc0b280c05c91b59"}, + {file = "msgpack-1.1.0-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:452aff037287acb1d70a804ffd022b21fa2bb7c46bee884dbc864cc9024128a0"}, + {file = "msgpack-1.1.0-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:8da4bf6d54ceed70e8861f833f83ce0814a2b72102e890cbdfe4b34764cdd66e"}, + {file = "msgpack-1.1.0-cp311-cp311-musllinux_1_2_i686.whl", hash = "sha256:41c991beebf175faf352fb940bf2af9ad1fb77fd25f38d9142053914947cdbf6"}, + {file = "msgpack-1.1.0-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:a52a1f3a5af7ba1c9ace055b659189f6c669cf3657095b50f9602af3a3ba0fe5"}, + {file = "msgpack-1.1.0-cp311-cp311-win32.whl", hash = "sha256:58638690ebd0a06427c5fe1a227bb6b8b9fdc2bd07701bec13c2335c82131a88"}, + {file = "msgpack-1.1.0-cp311-cp311-win_amd64.whl", hash = "sha256:fd2906780f25c8ed5d7b323379f6138524ba793428db5d0e9d226d3fa6aa1788"}, + {file = "msgpack-1.1.0-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:d46cf9e3705ea9485687aa4001a76e44748b609d260af21c4ceea7f2212a501d"}, + {file = "msgpack-1.1.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:5dbad74103df937e1325cc4bfeaf57713be0b4f15e1c2da43ccdd836393e2ea2"}, + {file = "msgpack-1.1.0-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:58dfc47f8b102da61e8949708b3eafc3504509a5728f8b4ddef84bd9e16ad420"}, + {file = "msgpack-1.1.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4676e5be1b472909b2ee6356ff425ebedf5142427842aa06b4dfd5117d1ca8a2"}, + {file = "msgpack-1.1.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:17fb65dd0bec285907f68b15734a993ad3fc94332b5bb21b0435846228de1f39"}, + {file = "msgpack-1.1.0-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:a51abd48c6d8ac89e0cfd4fe177c61481aca2d5e7ba42044fd218cfd8ea9899f"}, + {file = "msgpack-1.1.0-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:2137773500afa5494a61b1208619e3871f75f27b03bcfca7b3a7023284140247"}, + {file = "msgpack-1.1.0-cp312-cp312-musllinux_1_2_i686.whl", hash = "sha256:398b713459fea610861c8a7b62a6fec1882759f308ae0795b5413ff6a160cf3c"}, + {file = "msgpack-1.1.0-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:06f5fd2f6bb2a7914922d935d3b8bb4a7fff3a9a91cfce6d06c13bc42bec975b"}, + {file = "msgpack-1.1.0-cp312-cp312-win32.whl", hash = "sha256:ad33e8400e4ec17ba782f7b9cf868977d867ed784a1f5f2ab46e7ba53b6e1e1b"}, + {file = "msgpack-1.1.0-cp312-cp312-win_amd64.whl", hash = "sha256:115a7af8ee9e8cddc10f87636767857e7e3717b7a2e97379dc2054712693e90f"}, + {file = "msgpack-1.1.0-cp313-cp313-macosx_10_13_universal2.whl", hash = "sha256:071603e2f0771c45ad9bc65719291c568d4edf120b44eb36324dcb02a13bfddf"}, + {file = "msgpack-1.1.0-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:0f92a83b84e7c0749e3f12821949d79485971f087604178026085f60ce109330"}, + {file = "msgpack-1.1.0-cp313-cp313-macosx_11_0_arm64.whl", hash = "sha256:4a1964df7b81285d00a84da4e70cb1383f2e665e0f1f2a7027e683956d04b734"}, + {file = "msgpack-1.1.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:59caf6a4ed0d164055ccff8fe31eddc0ebc07cf7326a2aaa0dbf7a4001cd823e"}, + {file = "msgpack-1.1.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:0907e1a7119b337971a689153665764adc34e89175f9a34793307d9def08e6ca"}, + {file = "msgpack-1.1.0-cp313-cp313-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:65553c9b6da8166e819a6aa90ad15288599b340f91d18f60b2061f402b9a4915"}, + {file = "msgpack-1.1.0-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:7a946a8992941fea80ed4beae6bff74ffd7ee129a90b4dd5cf9c476a30e9708d"}, + {file = "msgpack-1.1.0-cp313-cp313-musllinux_1_2_i686.whl", hash = "sha256:4b51405e36e075193bc051315dbf29168d6141ae2500ba8cd80a522964e31434"}, + {file = "msgpack-1.1.0-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:b4c01941fd2ff87c2a934ee6055bda4ed353a7846b8d4f341c428109e9fcde8c"}, + {file = "msgpack-1.1.0-cp313-cp313-win32.whl", hash = "sha256:7c9a35ce2c2573bada929e0b7b3576de647b0defbd25f5139dcdaba0ae35a4cc"}, + {file = "msgpack-1.1.0-cp313-cp313-win_amd64.whl", hash = "sha256:bce7d9e614a04d0883af0b3d4d501171fbfca038f12c77fa838d9f198147a23f"}, + {file = "msgpack-1.1.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c40ffa9a15d74e05ba1fe2681ea33b9caffd886675412612d93ab17b58ea2fec"}, + {file = "msgpack-1.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f1ba6136e650898082d9d5a5217d5906d1e138024f836ff48691784bbe1adf96"}, + {file = "msgpack-1.1.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:e0856a2b7e8dcb874be44fea031d22e5b3a19121be92a1e098f46068a11b0870"}, + {file = "msgpack-1.1.0-cp38-cp38-musllinux_1_2_aarch64.whl", hash = "sha256:471e27a5787a2e3f974ba023f9e265a8c7cfd373632247deb225617e3100a3c7"}, + {file = "msgpack-1.1.0-cp38-cp38-musllinux_1_2_i686.whl", hash = "sha256:646afc8102935a388ffc3914b336d22d1c2d6209c773f3eb5dd4d6d3b6f8c1cb"}, + {file = "msgpack-1.1.0-cp38-cp38-musllinux_1_2_x86_64.whl", hash = "sha256:13599f8829cfbe0158f6456374e9eea9f44eee08076291771d8ae93eda56607f"}, + {file = "msgpack-1.1.0-cp38-cp38-win32.whl", hash = "sha256:8a84efb768fb968381e525eeeb3d92857e4985aacc39f3c47ffd00eb4509315b"}, + {file = "msgpack-1.1.0-cp38-cp38-win_amd64.whl", hash = "sha256:879a7b7b0ad82481c52d3c7eb99bf6f0645dbdec5134a4bddbd16f3506947feb"}, + {file = "msgpack-1.1.0-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:53258eeb7a80fc46f62fd59c876957a2d0e15e6449a9e71842b6d24419d88ca1"}, + {file = "msgpack-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:7e7b853bbc44fb03fbdba34feb4bd414322180135e2cb5164f20ce1c9795ee48"}, + {file = "msgpack-1.1.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:f3e9b4936df53b970513eac1758f3882c88658a220b58dcc1e39606dccaaf01c"}, + {file = "msgpack-1.1.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:46c34e99110762a76e3911fc923222472c9d681f1094096ac4102c18319e6468"}, + {file = "msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8a706d1e74dd3dea05cb54580d9bd8b2880e9264856ce5068027eed09680aa74"}, + {file = "msgpack-1.1.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:534480ee5690ab3cbed89d4c8971a5c631b69a8c0883ecfea96c19118510c846"}, + {file = "msgpack-1.1.0-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:8cf9e8c3a2153934a23ac160cc4cba0ec035f6867c8013cc6077a79823370346"}, + {file = "msgpack-1.1.0-cp39-cp39-musllinux_1_2_i686.whl", hash = "sha256:3180065ec2abbe13a4ad37688b61b99d7f9e012a535b930e0e683ad6bc30155b"}, + {file = "msgpack-1.1.0-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:c5a91481a3cc573ac8c0d9aace09345d989dc4a0202b7fcb312c88c26d4e71a8"}, + {file = "msgpack-1.1.0-cp39-cp39-win32.whl", hash = "sha256:f80bc7d47f76089633763f952e67f8214cb7b3ee6bfa489b3cb6a84cfac114cd"}, + {file = "msgpack-1.1.0-cp39-cp39-win_amd64.whl", hash = "sha256:4d1b7ff2d6146e16e8bd665ac726a89c74163ef8cd39fa8c1087d4e52d3a2325"}, + {file = "msgpack-1.1.0.tar.gz", hash = "sha256:dd432ccc2c72b914e4cb77afce64aab761c1137cc698be3984eee260bcb2896e"}, ] [[package]] @@ -2873,6 +2884,7 @@ optional = false python-versions = ">=3.9" files = [ {file = "pandas-2.2.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:90c6fca2acf139569e74e8781709dccb6fe25940488755716d1d354d6bc58bce"}, + {file = "pandas-2.2.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c7adfc142dac335d8c1e0dcbd37eb8617eac386596eb9e1a1b77791cf2498238"}, {file = "pandas-2.2.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4abfe0be0d7221be4f12552995e58723c7422c80a659da13ca382697de830c08"}, {file = "pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8635c16bf3d99040fdf3ca3db669a7250ddf49c55dc4aa8fe0ae0fa8d6dcc1f0"}, {file = "pandas-2.2.2-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:40ae1dffb3967a52203105a077415a86044a2bea011b5f321c6aa64b379a3f51"}, @@ -2893,6 +2905,7 @@ files = [ {file = "pandas-2.2.2-cp312-cp312-musllinux_1_1_x86_64.whl", hash = "sha256:43498c0bdb43d55cb162cdc8c06fac328ccb5d2eabe3cadeb3529ae6f0517c32"}, {file = "pandas-2.2.2-cp312-cp312-win_amd64.whl", hash = "sha256:d187d355ecec3629624fccb01d104da7d7f391db0311145817525281e2804d23"}, {file = "pandas-2.2.2-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:0ca6377b8fca51815f382bd0b697a0814c8bda55115678cbc94c30aacbb6eff2"}, + {file = "pandas-2.2.2-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:9057e6aa78a584bc93a13f0a9bf7e753a5e9770a30b4d758b8d5f2a62a9433cd"}, {file = "pandas-2.2.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:001910ad31abc7bf06f49dcc903755d2f7f3a9186c0c040b827e522e9cef0863"}, {file = "pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:66b479b0bd07204e37583c191535505410daa8df638fd8e75ae1b383851fe921"}, {file = "pandas-2.2.2-cp39-cp39-musllinux_1_1_aarch64.whl", hash = "sha256:a77e9d1c386196879aa5eb712e77461aaee433e54c68cf253053a73b7e49c33a"}, @@ -2902,7 +2915,11 @@ files = [ ] [package.dependencies] -numpy = {version = ">=1.22.4", markers = "python_version < \"3.11\""} +numpy = [ + {version = ">=1.22.4", markers = "python_version < \"3.11\""}, + {version = ">=1.23.2", markers = "python_version == \"3.11\""}, + {version = ">=1.26.0", markers = "python_version >= \"3.12\""}, +] python-dateutil = ">=2.8.2" pytz = ">=2020.1" tzdata = ">=2022.7" @@ -3100,19 +3117,19 @@ xarray = ["xarray"] [[package]] name = "platformdirs" -version = "4.2.2" +version = "4.3.6" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`." optional = false python-versions = ">=3.8" files = [ - {file = "platformdirs-4.2.2-py3-none-any.whl", hash = "sha256:2d7a1657e36a80ea911db832a8a6ece5ee53d8de21edd5cc5879af6530b1bfee"}, - {file = "platformdirs-4.2.2.tar.gz", hash = "sha256:38b7b51f512eed9e84a22788b4bce1de17c0adb134d6becb09836e37d8654cd3"}, + {file = "platformdirs-4.3.6-py3-none-any.whl", hash = "sha256:73e575e1408ab8103900836b97580d5307456908a03e92031bab39e4554cc3fb"}, + {file = "platformdirs-4.3.6.tar.gz", hash = "sha256:357fb2acbc885b0419afd3ce3ed34564c13c9b95c89360cd9563f73aa5e2b907"}, ] [package.extras] -docs = ["furo (>=2023.9.10)", "proselint (>=0.13)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.25.2)"] -test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"] -type = ["mypy (>=1.8)"] +docs = ["furo (>=2024.8.6)", "proselint (>=0.14)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"] +test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)"] +type = ["mypy (>=1.11.2)"] [[package]] name = "pluggy" @@ -3194,13 +3211,13 @@ wcwidth = "*" [[package]] name = "pronto" -version = "2.5.7" +version = "2.5.8" description = "Python frontend to ontologies." optional = false python-versions = ">=3.7" files = [ - {file = "pronto-2.5.7-py2.py3-none-any.whl", hash = "sha256:d7a053cb1735353ef1c708226e77d051a1a32906b5c77f89f9d99c6ca5b5c985"}, - {file = "pronto-2.5.7.tar.gz", hash = "sha256:014a5b02064781d6edd7ca5b4f63b13342dd9b5322248f5a4740f48a98464629"}, + {file = "pronto-2.5.8-py2.py3-none-any.whl", hash = "sha256:91445cd2c2000729e9b23be47b1e142fd967239700284f1375ee2b78d54a3416"}, + {file = "pronto-2.5.8.tar.gz", hash = "sha256:5283ec5b35ddc12d34f2e50098b9900bb7b80172b7f769ccc93f5d82b7022799"}, ] [package.dependencies] @@ -3398,61 +3415,70 @@ files = [ [[package]] name = "pymongo" -version = "4.8.0" +version = "4.9" description = "Python driver for MongoDB " optional = false python-versions = ">=3.8" files = [ - {file = "pymongo-4.8.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f2b7bec27e047e84947fbd41c782f07c54c30c76d14f3b8bf0c89f7413fac67a"}, - {file = "pymongo-4.8.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:3c68fe128a171493018ca5c8020fc08675be130d012b7ab3efe9e22698c612a1"}, - {file = "pymongo-4.8.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:920d4f8f157a71b3cb3f39bc09ce070693d6e9648fb0e30d00e2657d1dca4e49"}, - {file = "pymongo-4.8.0-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:52b4108ac9469febba18cea50db972605cc43978bedaa9fea413378877560ef8"}, - {file = "pymongo-4.8.0-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:180d5eb1dc28b62853e2f88017775c4500b07548ed28c0bd9c005c3d7bc52526"}, - {file = "pymongo-4.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:aec2b9088cdbceb87e6ca9c639d0ff9b9d083594dda5ca5d3c4f6774f4c81b33"}, - {file = "pymongo-4.8.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:d0cf61450feadca81deb1a1489cb1a3ae1e4266efd51adafecec0e503a8dcd84"}, - {file = "pymongo-4.8.0-cp310-cp310-win32.whl", hash = "sha256:8b18c8324809539c79bd6544d00e0607e98ff833ca21953df001510ca25915d1"}, - {file = "pymongo-4.8.0-cp310-cp310-win_amd64.whl", hash = "sha256:e5df28f74002e37bcbdfdc5109799f670e4dfef0fb527c391ff84f078050e7b5"}, - {file = "pymongo-4.8.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:6b50040d9767197b77ed420ada29b3bf18a638f9552d80f2da817b7c4a4c9c68"}, - {file = "pymongo-4.8.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:417369ce39af2b7c2a9c7152c1ed2393edfd1cbaf2a356ba31eb8bcbd5c98dd7"}, - {file = "pymongo-4.8.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:bf821bd3befb993a6db17229a2c60c1550e957de02a6ff4dd0af9476637b2e4d"}, - {file = "pymongo-4.8.0-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:9365166aa801c63dff1a3cb96e650be270da06e3464ab106727223123405510f"}, - {file = "pymongo-4.8.0-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:cc8b8582f4209c2459b04b049ac03c72c618e011d3caa5391ff86d1bda0cc486"}, - {file = "pymongo-4.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:16e5019f75f6827bb5354b6fef8dfc9d6c7446894a27346e03134d290eb9e758"}, - {file = "pymongo-4.8.0-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:3b5802151fc2b51cd45492c80ed22b441d20090fb76d1fd53cd7760b340ff554"}, - {file = "pymongo-4.8.0-cp311-cp311-win32.whl", hash = "sha256:4bf58e6825b93da63e499d1a58de7de563c31e575908d4e24876234ccb910eba"}, - {file = "pymongo-4.8.0-cp311-cp311-win_amd64.whl", hash = "sha256:b747c0e257b9d3e6495a018309b9e0c93b7f0d65271d1d62e572747f4ffafc88"}, - {file = "pymongo-4.8.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:e6a720a3d22b54183352dc65f08cd1547204d263e0651b213a0a2e577e838526"}, - {file = "pymongo-4.8.0-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:31e4d21201bdf15064cf47ce7b74722d3e1aea2597c6785882244a3bb58c7eab"}, - {file = "pymongo-4.8.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c6b804bb4f2d9dc389cc9e827d579fa327272cdb0629a99bfe5b83cb3e269ebf"}, - {file = "pymongo-4.8.0-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:f2fbdb87fe5075c8beb17a5c16348a1ea3c8b282a5cb72d173330be2fecf22f5"}, - {file = "pymongo-4.8.0-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:cd39455b7ee70aabee46f7399b32ab38b86b236c069ae559e22be6b46b2bbfc4"}, - {file = "pymongo-4.8.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:940d456774b17814bac5ea7fc28188c7a1338d4a233efbb6ba01de957bded2e8"}, - {file = "pymongo-4.8.0-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:236bbd7d0aef62e64caf4b24ca200f8c8670d1a6f5ea828c39eccdae423bc2b2"}, - {file = "pymongo-4.8.0-cp312-cp312-win32.whl", hash = "sha256:47ec8c3f0a7b2212dbc9be08d3bf17bc89abd211901093e3ef3f2adea7de7a69"}, - {file = "pymongo-4.8.0-cp312-cp312-win_amd64.whl", hash = "sha256:e84bc7707492f06fbc37a9f215374d2977d21b72e10a67f1b31893ec5a140ad8"}, - {file = "pymongo-4.8.0-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:519d1bab2b5e5218c64340b57d555d89c3f6c9d717cecbf826fb9d42415e7750"}, - {file = "pymongo-4.8.0-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:87075a1feb1e602e539bdb1ef8f4324a3427eb0d64208c3182e677d2c0718b6f"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:77f53429515d2b3e86dcc83dadecf7ff881e538c168d575f3688698a8707b80a"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:fdc20cd1e1141b04696ffcdb7c71e8a4a665db31fe72e51ec706b3bdd2d09f36"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:284d0717d1a7707744018b0b6ee7801b1b1ff044c42f7be7a01bb013de639470"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f5bf0eb8b6ef40fa22479f09375468c33bebb7fe49d14d9c96c8fd50355188b0"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:2ecd71b9226bd1d49416dc9f999772038e56f415a713be51bf18d8676a0841c8"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:e0061af6e8c5e68b13f1ec9ad5251247726653c5af3c0bbdfbca6cf931e99216"}, - {file = "pymongo-4.8.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:658d0170f27984e0d89c09fe5c42296613b711a3ffd847eb373b0dbb5b648d5f"}, - {file = "pymongo-4.8.0-cp38-cp38-win32.whl", hash = "sha256:3ed1c316718a2836f7efc3d75b4b0ffdd47894090bc697de8385acd13c513a70"}, - {file = "pymongo-4.8.0-cp38-cp38-win_amd64.whl", hash = "sha256:7148419eedfea9ecb940961cfe465efaba90595568a1fb97585fb535ea63fe2b"}, - {file = "pymongo-4.8.0-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:e8400587d594761e5136a3423111f499574be5fd53cf0aefa0d0f05b180710b0"}, - {file = "pymongo-4.8.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:af3e98dd9702b73e4e6fd780f6925352237f5dce8d99405ff1543f3771201704"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:de3a860f037bb51f968de320baef85090ff0bbb42ec4f28ec6a5ddf88be61871"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:0fc18b3a093f3db008c5fea0e980dbd3b743449eee29b5718bc2dc15ab5088bb"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:18c9d8f975dd7194c37193583fd7d1eb9aea0c21ee58955ecf35362239ff31ac"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:408b2f8fdbeca3c19e4156f28fff1ab11c3efb0407b60687162d49f68075e63c"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:b6564780cafd6abeea49759fe661792bd5a67e4f51bca62b88faab497ab5fe89"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:d18d86bc9e103f4d3d4f18b85a0471c0e13ce5b79194e4a0389a224bb70edd53"}, - {file = "pymongo-4.8.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:9097c331577cecf8034422956daaba7ec74c26f7b255d718c584faddd7fa2e3c"}, - {file = "pymongo-4.8.0-cp39-cp39-win32.whl", hash = "sha256:d5428dbcd43d02f6306e1c3c95f692f68b284e6ee5390292242f509004c9e3a8"}, - {file = "pymongo-4.8.0-cp39-cp39-win_amd64.whl", hash = "sha256:ef7225755ed27bfdb18730c68f6cb023d06c28f2b734597480fb4c0e500feb6f"}, - {file = "pymongo-4.8.0.tar.gz", hash = "sha256:454f2295875744dc70f1881e4b2eb99cdad008a33574bc8aaf120530f66c0cde"}, + {file = "pymongo-4.9-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:399fcf17bf638437d69a1f4ca40c1b630698d6324763a2cd7ba88bdbb3d17bf2"}, + {file = "pymongo-4.9-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:295e50348c8e30114871e9df0318899162a3dea52c40bd5b9a89004230a2736f"}, + {file = "pymongo-4.9-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:db39c7536ebc536be979167bce5b5cd1a671812604aa24497bb97c97f922c0cb"}, + {file = "pymongo-4.9-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:6f532c6880efc35149596322ae0bad5956d2f99351964ed9008033b3a5b11152"}, + {file = "pymongo-4.9-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:347fccf59452d08439d14ff81b2a4150b220e139695d973cfe7603e5d36544b4"}, + {file = "pymongo-4.9-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f9a5e3aa2963da88bcb9e91a6d6140b650d64f9f105e1fecc3c0f11cf9cccd1b"}, + {file = "pymongo-4.9-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:357d2bd57c08d8a4fabf8c98f5cd154d6199e5eb21cc580b3497eb9239883130"}, + {file = "pymongo-4.9-cp310-cp310-win32.whl", hash = "sha256:0b1a3623c3fdc86dbe1b0b1b276c239fed8bb52c0eb8de46cc854c5845f0b8a2"}, + {file = "pymongo-4.9-cp310-cp310-win_amd64.whl", hash = "sha256:e5226c0ced635232afba2a81f2573a0bb2960fd26d39fb2a735adba50430b76d"}, + {file = "pymongo-4.9-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:2cce017a279c0a75cd4be6e99313aab236f6008b5eb4325e2eeb9fe8ac6d4c2a"}, + {file = "pymongo-4.9-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:18cb2e7a50d7f9a409e610f5c618df858fdb7b568a8a513d9820db3afdf1e31b"}, + {file = "pymongo-4.9-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:307a10fb1b8a3eb396c8a1c6d468ee6156528d9572e657088b561aa746aba49c"}, + {file = "pymongo-4.9-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:2eaedad8bbad6b4032f64badf954ec90c57e3b09552b898b13ebc330aee498b8"}, + {file = "pymongo-4.9-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:991dfa2ca94facb5684a8b7cc3bacb67d88ec41ce1ce9f61d7a680afc925c740"}, + {file = "pymongo-4.9-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8d053ef99593405629234824b1bc6810eae71d4ee0a98e9b257d2c937ce54b87"}, + {file = "pymongo-4.9-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:1f8a0c65f0f4ed369519a816872f9c3df2b846cf75fc3e2b260747d3187be3b3"}, + {file = "pymongo-4.9-cp311-cp311-win32.whl", hash = "sha256:01747e00c02fe761b9b2edbd48e77288bdd35bcff072bb4aa810b801aff1cf56"}, + {file = "pymongo-4.9-cp311-cp311-win_amd64.whl", hash = "sha256:957903802ca4d0f48953a1a873268b04725fd5f3d866ddcdad70802b9b3f114c"}, + {file = "pymongo-4.9-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:1bf6083c219fba0bec665c8326d5482ac5df03a016ab6cd5fffdc35e0eb69406"}, + {file = "pymongo-4.9-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:71bd38288dedd99eefb637a0d467a3f84b6066a95c35bf3b164de54d2a9a868f"}, + {file = "pymongo-4.9-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e923b1f54a836ce17316381e898bd4353105edc39fa0a300d1894a1f102d0251"}, + {file = "pymongo-4.9-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:4ad27d7a8e1a7a9da2dafd86a301067797320a634b2d2f8fc54fe3d6fa1b000a"}, + {file = "pymongo-4.9-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:29676dca0dc8b45ce759d4c733836297727e144ed6f52ab8fe9350bcad59a2ef"}, + {file = "pymongo-4.9-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:12205588ba2c9cb4c4dfcf6a4700ced7b6980160a9746e3f054d08130e12727a"}, + {file = "pymongo-4.9-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:36077166060c537fe1033a6ee6c6476425de3d32321f89c6842499dc1966275c"}, + {file = "pymongo-4.9-cp312-cp312-win32.whl", hash = "sha256:b1eb84fb9e7906c1dff2d8bde55ec0abd1977f3ade2e5a3a679a224a1b621396"}, + {file = "pymongo-4.9-cp312-cp312-win_amd64.whl", hash = "sha256:55d7ab77e77a41d001dc499dae01704cb929bddcff8f2783b9b4d2fb3148b8c6"}, + {file = "pymongo-4.9-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:9732b230e3bfa18e1f7aabd873c629d19a82c6f2e80899b9a55ac53a159638ba"}, + {file = "pymongo-4.9-cp313-cp313-macosx_11_0_arm64.whl", hash = "sha256:408b4a152545baa01a640a9c081a840c52cb70e0ee0f68f35cd7908c31d8b572"}, + {file = "pymongo-4.9-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5c4d42722cae5e9b7d35a7951f203f83e805565f6b3c5bbebe54fdb680ebad3e"}, + {file = "pymongo-4.9-cp313-cp313-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:9203d8e924262b0171a8b343e168118d23e101e9bc10c0179ec4477f3ffe2a2a"}, + {file = "pymongo-4.9-cp313-cp313-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:be645f2f58ccf8a4e7e0c8af34bf75905c7b94a6609079ac96be7aeec5fd6eb8"}, + {file = "pymongo-4.9-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b9b371e090537b71761efcc7d05bdf8aeb597f81c2a0b9782249d15e8d74059e"}, + {file = "pymongo-4.9-cp313-cp313-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:85b35133f50c1f3d3f0f1ec3cd3e6ee2ee22cab410acd0d98bb396453be965f1"}, + {file = "pymongo-4.9-cp313-cp313-win32.whl", hash = "sha256:0f21a6577dfea445b0b388f41a06b268e5deb245a741c4e85d56d87ff1adcb34"}, + {file = "pymongo-4.9-cp313-cp313-win_amd64.whl", hash = "sha256:c6a2bfe47a73a51faa7c18e7f658bb4e36b6692a14b05e7f78352ebfb8a9d87b"}, + {file = "pymongo-4.9-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:7eb10369f4e12075e7720322a1afc72fc442d58d4a8b31a3354ad5fab480fa6e"}, + {file = "pymongo-4.9-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:740bfac33a08a1c32cdd69533e9b47b7db6a25582b64bd1cf340d8444ff253f4"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fa85c74582bf4df88fb7e96c42d76be8039a8be93c4379606acd12343bda9052"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:baffcf67f79878c7bd11c0739838cf6f15f6b149f32cff8aba2d6a98bfd2d1e9"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:263445885971c818c19cef0e19455aa1dbd4095d3d401738d9c90610624a9f96"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9c6fdea83531716ae244f173be9320a35fe0ce98c39bfba4093d2169b6b38da9"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:5a702fcb738bf2679460f668e100cf63d984528f4a05240f49fedcf33a741741"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:33976c3d6d0b9328fda3b06db8b4dae152e0959d662b8c1fc0fd18635435c733"}, + {file = "pymongo-4.9-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:0557cd1a692beac5085ea20ebacb5b27d2823348ea66992768f1a4214927fa8d"}, + {file = "pymongo-4.9-cp38-cp38-win32.whl", hash = "sha256:722d5ad63f139205b42d43f0c8abbb0b168bb2b5338f2b831f7e534666307668"}, + {file = "pymongo-4.9-cp38-cp38-win_amd64.whl", hash = "sha256:6b6b781c47cb206b3c051a8bde22627e1c45fccbcbc234286ea9921c1c6432d9"}, + {file = "pymongo-4.9-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:a7b9cf7eb3001dee6e8fd0451c6708f678458766c03d8c1f763a4e70298f4842"}, + {file = "pymongo-4.9-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:ceffbcce18fd23fe5f82301b31e84e38736dc116ac0ee4d9af4780a857f026a7"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:03aabe72dce8c348446d35b127cba2a9f9ff7c6c54a8d7446b34a4711611918e"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:b3396022ce9b5aa5ca5e95e061989a1b6262eecc70353a4287cf19390c83c367"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:8bf5de78727fa21ca385e656d8c49bb8fdc153ddffb3c4346d47bedafb288d87"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d81c43f10bd2fa899a128de1f9e68b57338ebba7f4478bd8ccd9c944965036ce"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:5b0f7410dd53c862dbc14ebec570c01182a406af16b6504632c95e298b9bbf1c"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:a8949123e8ca49715e3928f4915affeaf0a9b9e7e0a031df35030332961c7afb"}, + {file = "pymongo-4.9-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl", hash = "sha256:138df1db74a11d07be13d15ff35260f8ea8b797dadfd15f9c056b2c6a7525c2f"}, + {file = "pymongo-4.9-cp39-cp39-win32.whl", hash = "sha256:637f88ddf878bb3954b18e2546e5921eaf5207ff9a4e6ac3c550241e85773279"}, + {file = "pymongo-4.9-cp39-cp39-win_amd64.whl", hash = "sha256:aa7c825a2cc6bc9403965b676dd4f60875abc619611878bacf8e0f3210c53cc7"}, + {file = "pymongo-4.9.tar.gz", hash = "sha256:39db9832d80cb2249f4ded7f6bf3e1664127ef1f43fbbc0a6e34b8eb9fe21f2e"}, ] [package.dependencies] @@ -3460,23 +3486,23 @@ dnspython = ">=1.16.0,<3.0.0" [package.extras] aws = ["pymongo-auth-aws (>=1.1.0,<2.0.0)"] -docs = ["furo (==2023.9.10)", "readthedocs-sphinx-search (>=0.3,<1.0)", "sphinx (>=5.3,<8)", "sphinx-rtd-theme (>=2,<3)", "sphinxcontrib-shellcheck (>=1,<2)"] -encryption = ["certifi", "pymongo-auth-aws (>=1.1.0,<2.0.0)", "pymongocrypt (>=1.6.0,<2.0.0)"] +docs = ["furo (==2023.9.10)", "readthedocs-sphinx-search (>=0.3,<1.0)", "sphinx (>=5.3,<8)", "sphinx-autobuild (>=2020.9.1)", "sphinx-rtd-theme (>=2,<3)", "sphinxcontrib-shellcheck (>=1,<2)"] +encryption = ["certifi", "pymongo-auth-aws (>=1.1.0,<2.0.0)", "pymongocrypt (>=1.10.0,<2.0.0)"] gssapi = ["pykerberos", "winkerberos (>=0.5.0)"] ocsp = ["certifi", "cryptography (>=2.5)", "pyopenssl (>=17.2.0)", "requests (<3.0.0)", "service-identity (>=18.1.0)"] snappy = ["python-snappy"] -test = ["pytest (>=7)"] +test = ["pytest (>=8.2)", "pytest-asyncio (>=0.24.0)"] zstd = ["zstandard"] [[package]] name = "pyneuroml" -version = "1.3.9" +version = "1.3.12" description = "Python utilities for NeuroML" optional = false python-versions = "*" files = [ - {file = "pyNeuroML-1.3.9-py3-none-any.whl", hash = "sha256:6e2012489beb5e1aa3d39cc710c8e8d87bb3e67e07f125731444645bb3f22f9c"}, - {file = "pyneuroml-1.3.9.tar.gz", hash = "sha256:2fd8e287c305720712ee80f5e49ff4ee077a8167dc0671591f82f2b96227d67f"}, + {file = "pyNeuroML-1.3.12-py3-none-any.whl", hash = "sha256:e2ad6c21af03815139a8200d63ef1edb5d519016261e3defff824722c348bd2f"}, + {file = "pyneuroml-1.3.12.tar.gz", hash = "sha256:9aa3b5d53852b5102934200d5a0a763b58592dc5606c78df3d628d1adbcae62e"}, ] [package.dependencies] @@ -3560,24 +3586,27 @@ diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyreadline3" -version = "3.4.1" +version = "3.5.3" description = "A python implementation of GNU readline." optional = false -python-versions = "*" +python-versions = ">=3.8" files = [ - {file = "pyreadline3-3.4.1-py3-none-any.whl", hash = "sha256:b0efb6516fd4fb07b45949053826a62fa4cb353db5be2bbb4a7aa1fdd1e345fb"}, - {file = "pyreadline3-3.4.1.tar.gz", hash = "sha256:6f3d1f7b8a31ba32b73917cefc1f28cc660562f39aea8646d30bd6eff21f7bae"}, + {file = "pyreadline3-3.5.3-py3-none-any.whl", hash = "sha256:ddede153a92e5aad9c1fe63d692efd6a3e478f686adcd4938a051ffb63ec4f52"}, + {file = "pyreadline3-3.5.3.tar.gz", hash = "sha256:9234684ca75a00a702fda42b17cc26ca665bc9d7c2da06af450468253099ff61"}, ] +[package.extras] +dev = ["build", "flake8", "mypy", "pytest", "twine"] + [[package]] name = "pytest" -version = "8.3.2" +version = "8.3.3" description = "pytest: simple powerful testing with Python" optional = false python-versions = ">=3.8" files = [ - {file = "pytest-8.3.2-py3-none-any.whl", hash = "sha256:4ba08f9ae7dcf84ded419494d229b48d0903ea6407b030eaec46df5e6a73bba5"}, - {file = "pytest-8.3.2.tar.gz", hash = "sha256:c132345d12ce551242c87269de812483f5bcc87cdbb4722e48487ba194f9fdce"}, + {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"}, + {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"}, ] [package.dependencies] @@ -3838,13 +3867,13 @@ tests = ["flake8", "loguru", "pytest", "pytest-asyncio", "pytest-cov", "pytest-m [[package]] name = "pytz" -version = "2024.1" +version = "2024.2" description = "World timezone definitions, modern and historical" optional = false python-versions = "*" files = [ - {file = "pytz-2024.1-py2.py3-none-any.whl", hash = "sha256:328171f4e3623139da4983451950b28e95ac706e13f3f2630a879749e7a8b319"}, - {file = "pytz-2024.1.tar.gz", hash = "sha256:2a29735ea9c18baf14b448846bde5a48030ed267578472d8955cd0e7443a9812"}, + {file = "pytz-2024.2-py2.py3-none-any.whl", hash = "sha256:31c7c1817eb7fae7ca4b8c7ee50c72f93aa2dd863de768e1ef4245d426aa0725"}, + {file = "pytz-2024.2.tar.gz", hash = "sha256:2aa355083c50a0f93fa581709deac0c9ad65cca8a9e9beac660adcbd493c798a"}, ] [[package]] @@ -4068,42 +4097,6 @@ files = [ [package.dependencies] cffi = {version = "*", markers = "implementation_name == \"pypy\""} -[[package]] -name = "rbapy" -version = "1.0.2" -description = "Package for automated generation of bacterial Resource Balance Analysis (RBA) models and simulation of RBA models" -optional = false -python-versions = "*" -files = [] -develop = false - -[package.dependencies] -biopython = "*" -lxml = "*" -numpy = "*" -pandas = "*" -python-libsbml = "*" -scipy = "*" - -[package.extras] -cplex = ["cplex"] -cplex-conv-opt = ["conv_opt[cplex]"] -cplex-optlang = ["cplex", "optlang"] -dev = ["check-manifest"] -glpk = ["glpk"] -glpk-conv-opt = ["conv_opt"] -glpk-optlang = ["optlang"] -gurobi = ["gurobipy"] -gurobi-conv-opt = ["conv_opt[gurobi]"] -gurobi-optlang = ["gurobipy", "optlang"] -test = ["coverage", "pytest", "pytest-cov"] - -[package.source] -type = "git" -url = "https://github.com/biosimulators/RBApy.git" -reference = "d82e1ade319cb503f6e28759a0cbeffccabd89e8" -resolved_reference = "d82e1ade319cb503f6e28759a0cbeffccabd89e8" - [[package]] name = "rdflib" version = "7.0.0" @@ -4142,90 +4135,105 @@ rpds-py = ">=0.7.0" [[package]] name = "regex" -version = "2024.7.24" +version = "2024.9.11" description = "Alternative regular expression module, to replace re." optional = false python-versions = ">=3.8" files = [ - {file = "regex-2024.7.24-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:228b0d3f567fafa0633aee87f08b9276c7062da9616931382993c03808bb68ce"}, - {file = "regex-2024.7.24-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:3426de3b91d1bc73249042742f45c2148803c111d1175b283270177fdf669024"}, - {file = "regex-2024.7.24-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:f273674b445bcb6e4409bf8d1be67bc4b58e8b46fd0d560055d515b8830063cd"}, - {file = "regex-2024.7.24-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:23acc72f0f4e1a9e6e9843d6328177ae3074b4182167e34119ec7233dfeccf53"}, - {file = "regex-2024.7.24-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:65fd3d2e228cae024c411c5ccdffae4c315271eee4a8b839291f84f796b34eca"}, - {file = "regex-2024.7.24-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:c414cbda77dbf13c3bc88b073a1a9f375c7b0cb5e115e15d4b73ec3a2fbc6f59"}, - {file = "regex-2024.7.24-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bf7a89eef64b5455835f5ed30254ec19bf41f7541cd94f266ab7cbd463f00c41"}, - {file = "regex-2024.7.24-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:19c65b00d42804e3fbea9708f0937d157e53429a39b7c61253ff15670ff62cb5"}, - {file = "regex-2024.7.24-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:7a5486ca56c8869070a966321d5ab416ff0f83f30e0e2da1ab48815c8d165d46"}, - {file = "regex-2024.7.24-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:6f51f9556785e5a203713f5efd9c085b4a45aecd2a42573e2b5041881b588d1f"}, - {file = "regex-2024.7.24-cp310-cp310-musllinux_1_2_i686.whl", hash = "sha256:a4997716674d36a82eab3e86f8fa77080a5d8d96a389a61ea1d0e3a94a582cf7"}, - {file = "regex-2024.7.24-cp310-cp310-musllinux_1_2_ppc64le.whl", hash = "sha256:c0abb5e4e8ce71a61d9446040c1e86d4e6d23f9097275c5bd49ed978755ff0fe"}, - {file = "regex-2024.7.24-cp310-cp310-musllinux_1_2_s390x.whl", hash = "sha256:18300a1d78cf1290fa583cd8b7cde26ecb73e9f5916690cf9d42de569c89b1ce"}, - {file = "regex-2024.7.24-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:416c0e4f56308f34cdb18c3f59849479dde5b19febdcd6e6fa4d04b6c31c9faa"}, - {file = "regex-2024.7.24-cp310-cp310-win32.whl", hash = "sha256:fb168b5924bef397b5ba13aabd8cf5df7d3d93f10218d7b925e360d436863f66"}, - {file = "regex-2024.7.24-cp310-cp310-win_amd64.whl", hash = "sha256:6b9fc7e9cc983e75e2518496ba1afc524227c163e43d706688a6bb9eca41617e"}, - {file = "regex-2024.7.24-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:382281306e3adaaa7b8b9ebbb3ffb43358a7bbf585fa93821300a418bb975281"}, - {file = "regex-2024.7.24-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:4fdd1384619f406ad9037fe6b6eaa3de2749e2e12084abc80169e8e075377d3b"}, - {file = "regex-2024.7.24-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:3d974d24edb231446f708c455fd08f94c41c1ff4f04bcf06e5f36df5ef50b95a"}, - {file = "regex-2024.7.24-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a2ec4419a3fe6cf8a4795752596dfe0adb4aea40d3683a132bae9c30b81e8d73"}, - {file = "regex-2024.7.24-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:eb563dd3aea54c797adf513eeec819c4213d7dbfc311874eb4fd28d10f2ff0f2"}, - {file = "regex-2024.7.24-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:45104baae8b9f67569f0f1dca5e1f1ed77a54ae1cd8b0b07aba89272710db61e"}, - {file = "regex-2024.7.24-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:994448ee01864501912abf2bad9203bffc34158e80fe8bfb5b031f4f8e16da51"}, - {file = "regex-2024.7.24-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:3fac296f99283ac232d8125be932c5cd7644084a30748fda013028c815ba3364"}, - {file = "regex-2024.7.24-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:7e37e809b9303ec3a179085415cb5f418ecf65ec98cdfe34f6a078b46ef823ee"}, - {file = "regex-2024.7.24-cp311-cp311-musllinux_1_2_i686.whl", hash = "sha256:01b689e887f612610c869421241e075c02f2e3d1ae93a037cb14f88ab6a8934c"}, - {file = "regex-2024.7.24-cp311-cp311-musllinux_1_2_ppc64le.whl", hash = "sha256:f6442f0f0ff81775eaa5b05af8a0ffa1dda36e9cf6ec1e0d3d245e8564b684ce"}, - {file = "regex-2024.7.24-cp311-cp311-musllinux_1_2_s390x.whl", hash = "sha256:871e3ab2838fbcb4e0865a6e01233975df3a15e6fce93b6f99d75cacbd9862d1"}, - {file = "regex-2024.7.24-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:c918b7a1e26b4ab40409820ddccc5d49871a82329640f5005f73572d5eaa9b5e"}, - {file = "regex-2024.7.24-cp311-cp311-win32.whl", hash = "sha256:2dfbb8baf8ba2c2b9aa2807f44ed272f0913eeeba002478c4577b8d29cde215c"}, - {file = "regex-2024.7.24-cp311-cp311-win_amd64.whl", hash = "sha256:538d30cd96ed7d1416d3956f94d54e426a8daf7c14527f6e0d6d425fcb4cca52"}, - {file = "regex-2024.7.24-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:fe4ebef608553aff8deb845c7f4f1d0740ff76fa672c011cc0bacb2a00fbde86"}, - {file = "regex-2024.7.24-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:74007a5b25b7a678459f06559504f1eec2f0f17bca218c9d56f6a0a12bfffdad"}, - {file = "regex-2024.7.24-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:7df9ea48641da022c2a3c9c641650cd09f0cd15e8908bf931ad538f5ca7919c9"}, - {file = "regex-2024.7.24-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:6a1141a1dcc32904c47f6846b040275c6e5de0bf73f17d7a409035d55b76f289"}, - {file = "regex-2024.7.24-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:80c811cfcb5c331237d9bad3bea2c391114588cf4131707e84d9493064d267f9"}, - {file = "regex-2024.7.24-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:7214477bf9bd195894cf24005b1e7b496f46833337b5dedb7b2a6e33f66d962c"}, - {file = "regex-2024.7.24-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d55588cba7553f0b6ec33130bc3e114b355570b45785cebdc9daed8c637dd440"}, - {file = "regex-2024.7.24-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:558a57cfc32adcf19d3f791f62b5ff564922942e389e3cfdb538a23d65a6b610"}, - {file = "regex-2024.7.24-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:a512eed9dfd4117110b1881ba9a59b31433caed0c4101b361f768e7bcbaf93c5"}, - {file = "regex-2024.7.24-cp312-cp312-musllinux_1_2_i686.whl", hash = "sha256:86b17ba823ea76256b1885652e3a141a99a5c4422f4a869189db328321b73799"}, - {file = "regex-2024.7.24-cp312-cp312-musllinux_1_2_ppc64le.whl", hash = "sha256:5eefee9bfe23f6df09ffb6dfb23809f4d74a78acef004aa904dc7c88b9944b05"}, - {file = "regex-2024.7.24-cp312-cp312-musllinux_1_2_s390x.whl", hash = "sha256:731fcd76bbdbf225e2eb85b7c38da9633ad3073822f5ab32379381e8c3c12e94"}, - {file = "regex-2024.7.24-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:eaef80eac3b4cfbdd6de53c6e108b4c534c21ae055d1dbea2de6b3b8ff3def38"}, - {file = "regex-2024.7.24-cp312-cp312-win32.whl", hash = "sha256:185e029368d6f89f36e526764cf12bf8d6f0e3a2a7737da625a76f594bdfcbfc"}, - {file = "regex-2024.7.24-cp312-cp312-win_amd64.whl", hash = "sha256:2f1baff13cc2521bea83ab2528e7a80cbe0ebb2c6f0bfad15be7da3aed443908"}, - {file = "regex-2024.7.24-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:66b4c0731a5c81921e938dcf1a88e978264e26e6ac4ec96a4d21ae0354581ae0"}, - {file = "regex-2024.7.24-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:88ecc3afd7e776967fa16c80f974cb79399ee8dc6c96423321d6f7d4b881c92b"}, - {file = "regex-2024.7.24-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:64bd50cf16bcc54b274e20235bf8edbb64184a30e1e53873ff8d444e7ac656b2"}, - {file = "regex-2024.7.24-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:eb462f0e346fcf41a901a126b50f8781e9a474d3927930f3490f38a6e73b6950"}, - {file = "regex-2024.7.24-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:a82465ebbc9b1c5c50738536fdfa7cab639a261a99b469c9d4c7dcbb2b3f1e57"}, - {file = "regex-2024.7.24-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:68a8f8c046c6466ac61a36b65bb2395c74451df2ffb8458492ef49900efed293"}, - {file = "regex-2024.7.24-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:dac8e84fff5d27420f3c1e879ce9929108e873667ec87e0c8eeb413a5311adfe"}, - {file = "regex-2024.7.24-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ba2537ef2163db9e6ccdbeb6f6424282ae4dea43177402152c67ef869cf3978b"}, - {file = "regex-2024.7.24-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:43affe33137fcd679bdae93fb25924979517e011f9dea99163f80b82eadc7e53"}, - {file = "regex-2024.7.24-cp38-cp38-musllinux_1_2_aarch64.whl", hash = "sha256:c9bb87fdf2ab2370f21e4d5636e5317775e5d51ff32ebff2cf389f71b9b13750"}, - {file = "regex-2024.7.24-cp38-cp38-musllinux_1_2_i686.whl", hash = "sha256:945352286a541406f99b2655c973852da7911b3f4264e010218bbc1cc73168f2"}, - {file = "regex-2024.7.24-cp38-cp38-musllinux_1_2_ppc64le.whl", hash = "sha256:8bc593dcce679206b60a538c302d03c29b18e3d862609317cb560e18b66d10cf"}, - {file = "regex-2024.7.24-cp38-cp38-musllinux_1_2_s390x.whl", hash = "sha256:3f3b6ca8eae6d6c75a6cff525c8530c60e909a71a15e1b731723233331de4169"}, - {file = "regex-2024.7.24-cp38-cp38-musllinux_1_2_x86_64.whl", hash = "sha256:c51edc3541e11fbe83f0c4d9412ef6c79f664a3745fab261457e84465ec9d5a8"}, - {file = "regex-2024.7.24-cp38-cp38-win32.whl", hash = "sha256:d0a07763776188b4db4c9c7fb1b8c494049f84659bb387b71c73bbc07f189e96"}, - {file = "regex-2024.7.24-cp38-cp38-win_amd64.whl", hash = "sha256:8fd5afd101dcf86a270d254364e0e8dddedebe6bd1ab9d5f732f274fa00499a5"}, - {file = "regex-2024.7.24-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:0ffe3f9d430cd37d8fa5632ff6fb36d5b24818c5c986893063b4e5bdb84cdf24"}, - {file = "regex-2024.7.24-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:25419b70ba00a16abc90ee5fce061228206173231f004437730b67ac77323f0d"}, - {file = "regex-2024.7.24-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:33e2614a7ce627f0cdf2ad104797d1f68342d967de3695678c0cb84f530709f8"}, - {file = "regex-2024.7.24-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:d33a0021893ede5969876052796165bab6006559ab845fd7b515a30abdd990dc"}, - {file = "regex-2024.7.24-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:04ce29e2c5fedf296b1a1b0acc1724ba93a36fb14031f3abfb7abda2806c1535"}, - {file = "regex-2024.7.24-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:b16582783f44fbca6fcf46f61347340c787d7530d88b4d590a397a47583f31dd"}, - {file = "regex-2024.7.24-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:836d3cc225b3e8a943d0b02633fb2f28a66e281290302a79df0e1eaa984ff7c1"}, - {file = "regex-2024.7.24-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:438d9f0f4bc64e8dea78274caa5af971ceff0f8771e1a2333620969936ba10be"}, - {file = "regex-2024.7.24-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:973335b1624859cb0e52f96062a28aa18f3a5fc77a96e4a3d6d76e29811a0e6e"}, - {file = "regex-2024.7.24-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:c5e69fd3eb0b409432b537fe3c6f44ac089c458ab6b78dcec14478422879ec5f"}, - {file = "regex-2024.7.24-cp39-cp39-musllinux_1_2_i686.whl", hash = "sha256:fbf8c2f00904eaf63ff37718eb13acf8e178cb940520e47b2f05027f5bb34ce3"}, - {file = "regex-2024.7.24-cp39-cp39-musllinux_1_2_ppc64le.whl", hash = "sha256:ae2757ace61bc4061b69af19e4689fa4416e1a04840f33b441034202b5cd02d4"}, - {file = "regex-2024.7.24-cp39-cp39-musllinux_1_2_s390x.whl", hash = "sha256:44fc61b99035fd9b3b9453f1713234e5a7c92a04f3577252b45feefe1b327759"}, - {file = "regex-2024.7.24-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:84c312cdf839e8b579f504afcd7b65f35d60b6285d892b19adea16355e8343c9"}, - {file = "regex-2024.7.24-cp39-cp39-win32.whl", hash = "sha256:ca5b2028c2f7af4e13fb9fc29b28d0ce767c38c7facdf64f6c2cd040413055f1"}, - {file = "regex-2024.7.24-cp39-cp39-win_amd64.whl", hash = "sha256:7c479f5ae937ec9985ecaf42e2e10631551d909f203e31308c12d703922742f9"}, - {file = "regex-2024.7.24.tar.gz", hash = "sha256:9cfd009eed1a46b27c14039ad5bbc5e71b6367c5b2e6d5f5da0ea91600817506"}, + {file = "regex-2024.9.11-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:1494fa8725c285a81d01dc8c06b55287a1ee5e0e382d8413adc0a9197aac6408"}, + {file = "regex-2024.9.11-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0e12c481ad92d129c78f13a2a3662317e46ee7ef96c94fd332e1c29131875b7d"}, + {file = "regex-2024.9.11-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:16e13a7929791ac1216afde26f712802e3df7bf0360b32e4914dca3ab8baeea5"}, + {file = "regex-2024.9.11-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:46989629904bad940bbec2106528140a218b4a36bb3042d8406980be1941429c"}, + {file = "regex-2024.9.11-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:a906ed5e47a0ce5f04b2c981af1c9acf9e8696066900bf03b9d7879a6f679fc8"}, + {file = "regex-2024.9.11-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:e9a091b0550b3b0207784a7d6d0f1a00d1d1c8a11699c1a4d93db3fbefc3ad35"}, + {file = "regex-2024.9.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5ddcd9a179c0a6fa8add279a4444015acddcd7f232a49071ae57fa6e278f1f71"}, + {file = "regex-2024.9.11-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:6b41e1adc61fa347662b09398e31ad446afadff932a24807d3ceb955ed865cc8"}, + {file = "regex-2024.9.11-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:ced479f601cd2f8ca1fd7b23925a7e0ad512a56d6e9476f79b8f381d9d37090a"}, + {file = "regex-2024.9.11-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:635a1d96665f84b292e401c3d62775851aedc31d4f8784117b3c68c4fcd4118d"}, + {file = "regex-2024.9.11-cp310-cp310-musllinux_1_2_i686.whl", hash = "sha256:c0256beda696edcf7d97ef16b2a33a8e5a875affd6fa6567b54f7c577b30a137"}, + {file = "regex-2024.9.11-cp310-cp310-musllinux_1_2_ppc64le.whl", hash = "sha256:3ce4f1185db3fbde8ed8aa223fc9620f276c58de8b0d4f8cc86fd1360829edb6"}, + {file = "regex-2024.9.11-cp310-cp310-musllinux_1_2_s390x.whl", hash = "sha256:09d77559e80dcc9d24570da3745ab859a9cf91953062e4ab126ba9d5993688ca"}, + {file = "regex-2024.9.11-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:7a22ccefd4db3f12b526eccb129390942fe874a3a9fdbdd24cf55773a1faab1a"}, + {file = "regex-2024.9.11-cp310-cp310-win32.whl", hash = "sha256:f745ec09bc1b0bd15cfc73df6fa4f726dcc26bb16c23a03f9e3367d357eeedd0"}, + {file = "regex-2024.9.11-cp310-cp310-win_amd64.whl", hash = "sha256:01c2acb51f8a7d6494c8c5eafe3d8e06d76563d8a8a4643b37e9b2dd8a2ff623"}, + {file = "regex-2024.9.11-cp311-cp311-macosx_10_9_universal2.whl", hash = "sha256:2cce2449e5927a0bf084d346da6cd5eb016b2beca10d0013ab50e3c226ffc0df"}, + {file = "regex-2024.9.11-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:3b37fa423beefa44919e009745ccbf353d8c981516e807995b2bd11c2c77d268"}, + {file = "regex-2024.9.11-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:64ce2799bd75039b480cc0360907c4fb2f50022f030bf9e7a8705b636e408fad"}, + {file = "regex-2024.9.11-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a4cc92bb6db56ab0c1cbd17294e14f5e9224f0cc6521167ef388332604e92679"}, + {file = "regex-2024.9.11-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:d05ac6fa06959c4172eccd99a222e1fbf17b5670c4d596cb1e5cde99600674c4"}, + {file = "regex-2024.9.11-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:040562757795eeea356394a7fb13076ad4f99d3c62ab0f8bdfb21f99a1f85664"}, + {file = "regex-2024.9.11-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6113c008a7780792efc80f9dfe10ba0cd043cbf8dc9a76ef757850f51b4edc50"}, + {file = "regex-2024.9.11-cp311-cp311-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:8e5fb5f77c8745a60105403a774fe2c1759b71d3e7b4ca237a5e67ad066c7199"}, + {file = "regex-2024.9.11-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:54d9ff35d4515debf14bc27f1e3b38bfc453eff3220f5bce159642fa762fe5d4"}, + {file = "regex-2024.9.11-cp311-cp311-musllinux_1_2_i686.whl", hash = "sha256:df5cbb1fbc74a8305b6065d4ade43b993be03dbe0f8b30032cced0d7740994bd"}, + {file = "regex-2024.9.11-cp311-cp311-musllinux_1_2_ppc64le.whl", hash = "sha256:7fb89ee5d106e4a7a51bce305ac4efb981536301895f7bdcf93ec92ae0d91c7f"}, + {file = "regex-2024.9.11-cp311-cp311-musllinux_1_2_s390x.whl", hash = "sha256:a738b937d512b30bf75995c0159c0ddf9eec0775c9d72ac0202076c72f24aa96"}, + {file = "regex-2024.9.11-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:e28f9faeb14b6f23ac55bfbbfd3643f5c7c18ede093977f1df249f73fd22c7b1"}, + {file = "regex-2024.9.11-cp311-cp311-win32.whl", hash = "sha256:18e707ce6c92d7282dfce370cd205098384b8ee21544e7cb29b8aab955b66fa9"}, + {file = "regex-2024.9.11-cp311-cp311-win_amd64.whl", hash = "sha256:313ea15e5ff2a8cbbad96ccef6be638393041b0a7863183c2d31e0c6116688cf"}, + {file = "regex-2024.9.11-cp312-cp312-macosx_10_9_universal2.whl", hash = "sha256:b0d0a6c64fcc4ef9c69bd5b3b3626cc3776520a1637d8abaa62b9edc147a58f7"}, + {file = "regex-2024.9.11-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:49b0e06786ea663f933f3710a51e9385ce0cba0ea56b67107fd841a55d56a231"}, + {file = "regex-2024.9.11-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:5b513b6997a0b2f10e4fd3a1313568e373926e8c252bd76c960f96fd039cd28d"}, + {file = "regex-2024.9.11-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ee439691d8c23e76f9802c42a95cfeebf9d47cf4ffd06f18489122dbb0a7ad64"}, + {file = "regex-2024.9.11-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:a8f877c89719d759e52783f7fe6e1c67121076b87b40542966c02de5503ace42"}, + {file = "regex-2024.9.11-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:23b30c62d0f16827f2ae9f2bb87619bc4fba2044911e2e6c2eb1af0161cdb766"}, + {file = "regex-2024.9.11-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:85ab7824093d8f10d44330fe1e6493f756f252d145323dd17ab6b48733ff6c0a"}, + {file = "regex-2024.9.11-cp312-cp312-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:8dee5b4810a89447151999428fe096977346cf2f29f4d5e29609d2e19e0199c9"}, + {file = "regex-2024.9.11-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:98eeee2f2e63edae2181c886d7911ce502e1292794f4c5ee71e60e23e8d26b5d"}, + {file = "regex-2024.9.11-cp312-cp312-musllinux_1_2_i686.whl", hash = "sha256:57fdd2e0b2694ce6fc2e5ccf189789c3e2962916fb38779d3e3521ff8fe7a822"}, + {file = "regex-2024.9.11-cp312-cp312-musllinux_1_2_ppc64le.whl", hash = "sha256:d552c78411f60b1fdaafd117a1fca2f02e562e309223b9d44b7de8be451ec5e0"}, + {file = "regex-2024.9.11-cp312-cp312-musllinux_1_2_s390x.whl", hash = "sha256:a0b2b80321c2ed3fcf0385ec9e51a12253c50f146fddb2abbb10f033fe3d049a"}, + {file = "regex-2024.9.11-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:18406efb2f5a0e57e3a5881cd9354c1512d3bb4f5c45d96d110a66114d84d23a"}, + {file = "regex-2024.9.11-cp312-cp312-win32.whl", hash = "sha256:e464b467f1588e2c42d26814231edecbcfe77f5ac414d92cbf4e7b55b2c2a776"}, + {file = "regex-2024.9.11-cp312-cp312-win_amd64.whl", hash = "sha256:9e8719792ca63c6b8340380352c24dcb8cd7ec49dae36e963742a275dfae6009"}, + {file = "regex-2024.9.11-cp313-cp313-macosx_10_13_universal2.whl", hash = "sha256:c157bb447303070f256e084668b702073db99bbb61d44f85d811025fcf38f784"}, + {file = "regex-2024.9.11-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:4db21ece84dfeefc5d8a3863f101995de646c6cb0536952c321a2650aa202c36"}, + {file = "regex-2024.9.11-cp313-cp313-macosx_11_0_arm64.whl", hash = "sha256:220e92a30b426daf23bb67a7962900ed4613589bab80382be09b48896d211e92"}, + {file = "regex-2024.9.11-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:eb1ae19e64c14c7ec1995f40bd932448713d3c73509e82d8cd7744dc00e29e86"}, + {file = "regex-2024.9.11-cp313-cp313-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:f47cd43a5bfa48f86925fe26fbdd0a488ff15b62468abb5d2a1e092a4fb10e85"}, + {file = "regex-2024.9.11-cp313-cp313-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:9d4a76b96f398697fe01117093613166e6aa8195d63f1b4ec3f21ab637632963"}, + {file = "regex-2024.9.11-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:0ea51dcc0835eea2ea31d66456210a4e01a076d820e9039b04ae8d17ac11dee6"}, + {file = "regex-2024.9.11-cp313-cp313-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:b7aaa315101c6567a9a45d2839322c51c8d6e81f67683d529512f5bcfb99c802"}, + {file = "regex-2024.9.11-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:c57d08ad67aba97af57a7263c2d9006d5c404d721c5f7542f077f109ec2a4a29"}, + {file = "regex-2024.9.11-cp313-cp313-musllinux_1_2_i686.whl", hash = "sha256:f8404bf61298bb6f8224bb9176c1424548ee1181130818fcd2cbffddc768bed8"}, + {file = "regex-2024.9.11-cp313-cp313-musllinux_1_2_ppc64le.whl", hash = "sha256:dd4490a33eb909ef5078ab20f5f000087afa2a4daa27b4c072ccb3cb3050ad84"}, + {file = "regex-2024.9.11-cp313-cp313-musllinux_1_2_s390x.whl", hash = "sha256:eee9130eaad130649fd73e5cd92f60e55708952260ede70da64de420cdcad554"}, + {file = "regex-2024.9.11-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:6a2644a93da36c784e546de579ec1806bfd2763ef47babc1b03d765fe560c9f8"}, + {file = "regex-2024.9.11-cp313-cp313-win32.whl", hash = "sha256:e997fd30430c57138adc06bba4c7c2968fb13d101e57dd5bb9355bf8ce3fa7e8"}, + {file = "regex-2024.9.11-cp313-cp313-win_amd64.whl", hash = "sha256:042c55879cfeb21a8adacc84ea347721d3d83a159da6acdf1116859e2427c43f"}, + {file = "regex-2024.9.11-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:35f4a6f96aa6cb3f2f7247027b07b15a374f0d5b912c0001418d1d55024d5cb4"}, + {file = "regex-2024.9.11-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:55b96e7ce3a69a8449a66984c268062fbaa0d8ae437b285428e12797baefce7e"}, + {file = "regex-2024.9.11-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:cb130fccd1a37ed894824b8c046321540263013da72745d755f2d35114b81a60"}, + {file = "regex-2024.9.11-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:323c1f04be6b2968944d730e5c2091c8c89767903ecaa135203eec4565ed2b2b"}, + {file = "regex-2024.9.11-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:be1c8ed48c4c4065ecb19d882a0ce1afe0745dfad8ce48c49586b90a55f02366"}, + {file = "regex-2024.9.11-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:b5b029322e6e7b94fff16cd120ab35a253236a5f99a79fb04fda7ae71ca20ae8"}, + {file = "regex-2024.9.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f6fff13ef6b5f29221d6904aa816c34701462956aa72a77f1f151a8ec4f56aeb"}, + {file = "regex-2024.9.11-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:587d4af3979376652010e400accc30404e6c16b7df574048ab1f581af82065e4"}, + {file = "regex-2024.9.11-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:079400a8269544b955ffa9e31f186f01d96829110a3bf79dc338e9910f794fca"}, + {file = "regex-2024.9.11-cp38-cp38-musllinux_1_2_aarch64.whl", hash = "sha256:f9268774428ec173654985ce55fc6caf4c6d11ade0f6f914d48ef4719eb05ebb"}, + {file = "regex-2024.9.11-cp38-cp38-musllinux_1_2_i686.whl", hash = "sha256:23f9985c8784e544d53fc2930fc1ac1a7319f5d5332d228437acc9f418f2f168"}, + {file = "regex-2024.9.11-cp38-cp38-musllinux_1_2_ppc64le.whl", hash = "sha256:ae2941333154baff9838e88aa71c1d84f4438189ecc6021a12c7573728b5838e"}, + {file = "regex-2024.9.11-cp38-cp38-musllinux_1_2_s390x.whl", hash = "sha256:e93f1c331ca8e86fe877a48ad64e77882c0c4da0097f2212873a69bbfea95d0c"}, + {file = "regex-2024.9.11-cp38-cp38-musllinux_1_2_x86_64.whl", hash = "sha256:846bc79ee753acf93aef4184c040d709940c9d001029ceb7b7a52747b80ed2dd"}, + {file = "regex-2024.9.11-cp38-cp38-win32.whl", hash = "sha256:c94bb0a9f1db10a1d16c00880bdebd5f9faf267273b8f5bd1878126e0fbde771"}, + {file = "regex-2024.9.11-cp38-cp38-win_amd64.whl", hash = "sha256:2b08fce89fbd45664d3df6ad93e554b6c16933ffa9d55cb7e01182baaf971508"}, + {file = "regex-2024.9.11-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:07f45f287469039ffc2c53caf6803cd506eb5f5f637f1d4acb37a738f71dd066"}, + {file = "regex-2024.9.11-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:4838e24ee015101d9f901988001038f7f0d90dc0c3b115541a1365fb439add62"}, + {file = "regex-2024.9.11-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:6edd623bae6a737f10ce853ea076f56f507fd7726bee96a41ee3d68d347e4d16"}, + {file = "regex-2024.9.11-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c69ada171c2d0e97a4b5aa78fbb835e0ffbb6b13fc5da968c09811346564f0d3"}, + {file = "regex-2024.9.11-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:02087ea0a03b4af1ed6ebab2c54d7118127fee8d71b26398e8e4b05b78963199"}, + {file = "regex-2024.9.11-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:69dee6a020693d12a3cf892aba4808fe168d2a4cef368eb9bf74f5398bfd4ee8"}, + {file = "regex-2024.9.11-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:297f54910247508e6e5cae669f2bc308985c60540a4edd1c77203ef19bfa63ca"}, + {file = "regex-2024.9.11-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ecea58b43a67b1b79805f1a0255730edaf5191ecef84dbc4cc85eb30bc8b63b9"}, + {file = "regex-2024.9.11-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:eab4bb380f15e189d1313195b062a6aa908f5bd687a0ceccd47c8211e9cf0d4a"}, + {file = "regex-2024.9.11-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:0cbff728659ce4bbf4c30b2a1be040faafaa9eca6ecde40aaff86f7889f4ab39"}, + {file = "regex-2024.9.11-cp39-cp39-musllinux_1_2_i686.whl", hash = "sha256:54c4a097b8bc5bb0dfc83ae498061d53ad7b5762e00f4adaa23bee22b012e6ba"}, + {file = "regex-2024.9.11-cp39-cp39-musllinux_1_2_ppc64le.whl", hash = "sha256:73d6d2f64f4d894c96626a75578b0bf7d9e56dcda8c3d037a2118fdfe9b1c664"}, + {file = "regex-2024.9.11-cp39-cp39-musllinux_1_2_s390x.whl", hash = "sha256:e53b5fbab5d675aec9f0c501274c467c0f9a5d23696cfc94247e1fb56501ed89"}, + {file = "regex-2024.9.11-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:0ffbcf9221e04502fc35e54d1ce9567541979c3fdfb93d2c554f0ca583a19b35"}, + {file = "regex-2024.9.11-cp39-cp39-win32.whl", hash = "sha256:e4c22e1ac1f1ec1e09f72e6c44d8f2244173db7eb9629cc3a346a8d7ccc31142"}, + {file = "regex-2024.9.11-cp39-cp39-win_amd64.whl", hash = "sha256:faa3c142464efec496967359ca99696c896c591c56c53506bac1ad465f66e919"}, + {file = "regex-2024.9.11.tar.gz", hash = "sha256:6c188c307e8433bcb63dc1915022deb553b4203a70722fc542c363bf120a01fd"}, ] [[package]] @@ -4386,56 +4394,6 @@ files = [ {file = "rpds_py-0.20.0.tar.gz", hash = "sha256:d72a210824facfdaf8768cf2d7ca25a042c30320b3020de2fa04640920d4e121"}, ] -[[package]] -name = "scipy" -version = "1.14.1" -description = "Fundamental algorithms for scientific computing in Python" -optional = false -python-versions = ">=3.10" -files = [ - {file = "scipy-1.14.1-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:b28d2ca4add7ac16ae8bb6632a3c86e4b9e4d52d3e34267f6e1b0c1f8d87e389"}, - {file = "scipy-1.14.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:d0d2821003174de06b69e58cef2316a6622b60ee613121199cb2852a873f8cf3"}, - {file = "scipy-1.14.1-cp310-cp310-macosx_14_0_arm64.whl", hash = "sha256:8bddf15838ba768bb5f5083c1ea012d64c9a444e16192762bd858f1e126196d0"}, - {file = "scipy-1.14.1-cp310-cp310-macosx_14_0_x86_64.whl", hash = "sha256:97c5dddd5932bd2a1a31c927ba5e1463a53b87ca96b5c9bdf5dfd6096e27efc3"}, - {file = "scipy-1.14.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:2ff0a7e01e422c15739ecd64432743cf7aae2b03f3084288f399affcefe5222d"}, - {file = "scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8e32dced201274bf96899e6491d9ba3e9a5f6b336708656466ad0522d8528f69"}, - {file = "scipy-1.14.1-cp310-cp310-musllinux_1_2_x86_64.whl", hash = "sha256:8426251ad1e4ad903a4514712d2fa8fdd5382c978010d1c6f5f37ef286a713ad"}, - {file = "scipy-1.14.1-cp310-cp310-win_amd64.whl", hash = "sha256:a49f6ed96f83966f576b33a44257d869756df6cf1ef4934f59dd58b25e0327e5"}, - {file = "scipy-1.14.1-cp311-cp311-macosx_10_13_x86_64.whl", hash = "sha256:2da0469a4ef0ecd3693761acbdc20f2fdeafb69e6819cc081308cc978153c675"}, - {file = "scipy-1.14.1-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:c0ee987efa6737242745f347835da2cc5bb9f1b42996a4d97d5c7ff7928cb6f2"}, - {file = "scipy-1.14.1-cp311-cp311-macosx_14_0_arm64.whl", hash = "sha256:3a1b111fac6baec1c1d92f27e76511c9e7218f1695d61b59e05e0fe04dc59617"}, - {file = "scipy-1.14.1-cp311-cp311-macosx_14_0_x86_64.whl", hash = "sha256:8475230e55549ab3f207bff11ebfc91c805dc3463ef62eda3ccf593254524ce8"}, - {file = "scipy-1.14.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:278266012eb69f4a720827bdd2dc54b2271c97d84255b2faaa8f161a158c3b37"}, - {file = "scipy-1.14.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:fef8c87f8abfb884dac04e97824b61299880c43f4ce675dd2cbeadd3c9b466d2"}, - {file = "scipy-1.14.1-cp311-cp311-musllinux_1_2_x86_64.whl", hash = "sha256:b05d43735bb2f07d689f56f7b474788a13ed8adc484a85aa65c0fd931cf9ccd2"}, - {file = "scipy-1.14.1-cp311-cp311-win_amd64.whl", hash = "sha256:716e389b694c4bb564b4fc0c51bc84d381735e0d39d3f26ec1af2556ec6aad94"}, - {file = "scipy-1.14.1-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:631f07b3734d34aced009aaf6fedfd0eb3498a97e581c3b1e5f14a04164a456d"}, - {file = "scipy-1.14.1-cp312-cp312-macosx_12_0_arm64.whl", hash = "sha256:af29a935803cc707ab2ed7791c44288a682f9c8107bc00f0eccc4f92c08d6e07"}, - {file = "scipy-1.14.1-cp312-cp312-macosx_14_0_arm64.whl", hash = "sha256:2843f2d527d9eebec9a43e6b406fb7266f3af25a751aa91d62ff416f54170bc5"}, - {file = "scipy-1.14.1-cp312-cp312-macosx_14_0_x86_64.whl", hash = "sha256:eb58ca0abd96911932f688528977858681a59d61a7ce908ffd355957f7025cfc"}, - {file = "scipy-1.14.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:30ac8812c1d2aab7131a79ba62933a2a76f582d5dbbc695192453dae67ad6310"}, - {file = "scipy-1.14.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8f9ea80f2e65bdaa0b7627fb00cbeb2daf163caa015e59b7516395fe3bd1e066"}, - {file = "scipy-1.14.1-cp312-cp312-musllinux_1_2_x86_64.whl", hash = "sha256:edaf02b82cd7639db00dbff629995ef185c8df4c3ffa71a5562a595765a06ce1"}, - {file = "scipy-1.14.1-cp312-cp312-win_amd64.whl", hash = "sha256:2ff38e22128e6c03ff73b6bb0f85f897d2362f8c052e3b8ad00532198fbdae3f"}, - {file = "scipy-1.14.1-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:1729560c906963fc8389f6aac023739ff3983e727b1a4d87696b7bf108316a79"}, - {file = "scipy-1.14.1-cp313-cp313-macosx_12_0_arm64.whl", hash = "sha256:4079b90df244709e675cdc8b93bfd8a395d59af40b72e339c2287c91860deb8e"}, - {file = "scipy-1.14.1-cp313-cp313-macosx_14_0_arm64.whl", hash = "sha256:e0cf28db0f24a38b2a0ca33a85a54852586e43cf6fd876365c86e0657cfe7d73"}, - {file = "scipy-1.14.1-cp313-cp313-macosx_14_0_x86_64.whl", hash = "sha256:0c2f95de3b04e26f5f3ad5bb05e74ba7f68b837133a4492414b3afd79dfe540e"}, - {file = "scipy-1.14.1-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b99722ea48b7ea25e8e015e8341ae74624f72e5f21fc2abd45f3a93266de4c5d"}, - {file = "scipy-1.14.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5149e3fd2d686e42144a093b206aef01932a0059c2a33ddfa67f5f035bdfe13e"}, - {file = "scipy-1.14.1-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:e4f5a7c49323533f9103d4dacf4e4f07078f360743dec7f7596949149efeec06"}, - {file = "scipy-1.14.1-cp313-cp313-win_amd64.whl", hash = "sha256:baff393942b550823bfce952bb62270ee17504d02a1801d7fd0719534dfb9c84"}, - {file = "scipy-1.14.1.tar.gz", hash = "sha256:5a275584e726026a5699459aa72f828a610821006228e841b94275c4a7c08417"}, -] - -[package.dependencies] -numpy = ">=1.23.5,<2.3" - -[package.extras] -dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy (==1.10.0)", "pycodestyle", "pydevtool", "rich-click", "ruff (>=0.0.292)", "types-psutil", "typing_extensions"] -doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.13.1)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0,<=7.3.7)", "sphinx-design (>=0.4.0)"] -test = ["Cython", "array-api-strict (>=2.0)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] - [[package]] name = "seaborn" version = "0.13.2" @@ -4475,18 +4433,18 @@ win32 = ["pywin32"] [[package]] name = "setuptools" -version = "74.1.2" +version = "75.1.0" description = "Easily download, build, install, upgrade, and uninstall Python packages" optional = false python-versions = ">=3.8" files = [ - {file = "setuptools-74.1.2-py3-none-any.whl", hash = "sha256:5f4c08aa4d3ebcb57a50c33b1b07e94315d7fc7230f7115e47fc99776c8ce308"}, - {file = "setuptools-74.1.2.tar.gz", hash = "sha256:95b40ed940a1c67eb70fc099094bd6e99c6ee7c23aa2306f4d2697ba7916f9c6"}, + {file = "setuptools-75.1.0-py3-none-any.whl", hash = "sha256:35ab7fd3bcd95e6b7fd704e4a1539513edad446c097797f2985e0e4b960772f2"}, + {file = "setuptools-75.1.0.tar.gz", hash = "sha256:d59a21b17a275fb872a9c3dae73963160ae079f1049ed956880cd7c09b120538"}, ] [package.extras] check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.5.2)"] -core = ["importlib-metadata (>=6)", "importlib-resources (>=5.10.2)", "jaraco.text (>=3.7)", "more-itertools (>=8.8)", "packaging (>=24)", "platformdirs (>=2.6.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] +core = ["importlib-metadata (>=6)", "importlib-resources (>=5.10.2)", "jaraco.collections", "jaraco.functools", "jaraco.text (>=3.7)", "more-itertools", "more-itertools (>=8.8)", "packaging", "packaging (>=24)", "platformdirs (>=2.6.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"] cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"] enabler = ["pytest-enabler (>=2.2)"] @@ -5045,13 +5003,13 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0, [[package]] name = "types-python-dateutil" -version = "2.9.0.20240821" +version = "2.9.0.20240906" description = "Typing stubs for python-dateutil" optional = false python-versions = ">=3.8" files = [ - {file = "types-python-dateutil-2.9.0.20240821.tar.gz", hash = "sha256:9649d1dcb6fef1046fb18bebe9ea2aa0028b160918518c34589a46045f6ebd98"}, - {file = "types_python_dateutil-2.9.0.20240821-py3-none-any.whl", hash = "sha256:f5889fcb4e63ed4aaa379b44f93c32593d50b9a94c9a60a0c854d8cc3511cd57"}, + {file = "types-python-dateutil-2.9.0.20240906.tar.gz", hash = "sha256:9706c3b68284c25adffc47319ecc7947e5bb86b3773f843c73906fd598bc176e"}, + {file = "types_python_dateutil-2.9.0.20240906-py3-none-any.whl", hash = "sha256:27c8cc2d058ccb14946eebcaaa503088f4f6dbc4fb6093d3d456a49aef2753f6"}, ] [[package]] @@ -5103,13 +5061,13 @@ files = [ [[package]] name = "urllib3" -version = "2.2.2" +version = "2.2.3" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = ">=3.8" files = [ - {file = "urllib3-2.2.2-py3-none-any.whl", hash = "sha256:a448b2f64d686155468037e1ace9f2d2199776e17f0a46610480d311f73e3472"}, - {file = "urllib3-2.2.2.tar.gz", hash = "sha256:dd505485549a7a552833da5e6063639d0d177c04f23bc3864e41e5dc5f612168"}, + {file = "urllib3-2.2.3-py3-none-any.whl", hash = "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac"}, + {file = "urllib3-2.2.3.tar.gz", hash = "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"}, ] [package.extras] @@ -5204,12 +5162,12 @@ escher = ["bezier"] lems = ["pint", "pylems", "pyneuroml"] logging = ["capturer"] neuroml = ["libneuroml", "pyneuroml"] -rba = ["rbapy"] +rba = [] sbml = ["python-libsbml"] simularium = ["simulariumio"] smoldyn = ["smoldyn"] [metadata] lock-version = "2.0" -python-versions = "~3.10" -content-hash = "dcf17f9179cbb0782fc1eeffb392526c7e3c6630100cf4cb4be1548bbea3879d" +python-versions = "^3.10" +content-hash = "9178f9d580c1de5d442c0688bdf5c77a9559b70d4954195d70ff8519c2c3ac01" diff --git a/pyproject.toml b/pyproject.toml index a549db7b..25eac04a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "biosimulators-utils" -version = "0.1.188" +version = "0.2.0" description = "description" license = "MIT" authors = ["Center for Reproducible Biomedical Modeling "] @@ -21,7 +21,7 @@ include = [ ] [tool.poetry.dependencies] -python = "~3.10" +python = "^3.10" appdirs = "*" biopython = "*" cement = "*" @@ -58,7 +58,7 @@ pylems = {version = "*", optional = true} pyneuroml = {version = ">=0.5.18", optional = true} pint = {version = "*", optional = true} libneuroml = {version = "*", optional = true} -rbapy = { git = "https://github.com/biosimulators/RBApy.git", rev="d82e1ade319cb503f6e28759a0cbeffccabd89e8", optional = true } +#rbapy = { git = "https://github.com/biosimulators/RBApy.git", rev="d82e1ade319cb503f6e28759a0cbeffccabd89e8", optional = true } python-libsbml = {version = "*", optional = true} smoldyn = {version = ">=2.66", optional = true} simulariumio = {version = "*", optional = true} @@ -111,18 +111,17 @@ dependencies = { pylems = "*", pyneuroml = "*", pint = "*" } optional = true dependencies = { libneuroml = "*", pyneuroml = ">=0.5.18" } -[tool.poetry.group.rba] -optional = true -# in requirements.optional.txt, rbapy was specified as: -# -# [rba] -# python -m pip install git+https://github.com/biosimulators/RBApy.git#egg=rbapy -# - dependencies = { rbapy = { git = "https://github.com/biosimulators/RBApy.git", rev="d82e1ade319cb503f6e28759a0cbeffccabd89e8" } } -# -# if using official release (not biosimulators fork), use: -# dependencies = { rbapy = "*" } - +#[tool.poetry.group.rba] +#optional = true +## in requirements.optional.txt, rbapy was specified as: +## +## [rba] +## python -m pip install git+https://github.com/biosimulators/RBApy.git#egg=rbapy +## +# dependencies = { rbapy = { git = "https://github.com/biosimulators/RBApy.git", rev="d82e1ade319cb503f6e28759a0cbeffccabd89e8" } } +## +## if using official release (not biosimulators fork), use: +## dependencies = { rbapy = "*" } [tool.poetry.group.sbml] optional = true diff --git a/tests/model_lang/rba/test_rba_utils.py b/tests/model_lang/rba/test_rba_utils.py index 5fc6eaaa..071c634f 100644 --- a/tests/model_lang/rba/test_rba_utils.py +++ b/tests/model_lang/rba/test_rba_utils.py @@ -1,79 +1,80 @@ -from biosimulators_utils.model_lang.rba.utils import get_parameters_variables_outputs_for_simulation -from biosimulators_utils.sedml.data_model import SteadyStateSimulation -import math -import os +# from biosimulators_utils.model_lang.rba.utils import get_parameters_variables_outputs_for_simulation +# from biosimulators_utils.sedml.data_model import SteadyStateSimulation +# import math +# import os import unittest class RbaUtilsTestCase(unittest.TestCase): - FIXTURES_DIRNAME = os.path.join(os.path.dirname(__file__), '..', '..', 'fixtures', 'rba') - - def test_get_parameters_variables_for_simulation(self): - filename = os.path.join(self.FIXTURES_DIRNAME, 'Escherichia-coli-K12-WT.zip') - params, sims, vars, plots = get_parameters_variables_outputs_for_simulation(filename, None, SteadyStateSimulation) - - self.assertEqual(len(params), 1620) - - param = next(param for param in params if param.id == 'parameter_amino_acid_concentration_Y_MIN') - self.assertEqual(param.name, 'Value of parameter "Y_MIN" of function "amino_acid_concentration"') - self.assertEqual(param.target, 'parameters.functions.amino_acid_concentration.parameters.Y_MIN') - self.assertEqual(param.new_value, '-inf') - - self.assertEqual(len(sims), 1) - sim = sims[0] - self.assertIsInstance(sim, SteadyStateSimulation) - self.assertEqual(sim.algorithm.kisao_id, 'KISAO_0000669') - self.assertEqual(sim.algorithm.changes, []) - - self.assertEqual(len(vars), 15766) - - self.assertEqual(vars[0].id, 'objective') - self.assertEqual(vars[0].name, 'Value of objective') - self.assertEqual(vars[0].target, 'objective') - - var = next(var for var in vars if var.id == 'M_pqq_p') - self.assertEqual(var.name, 'Dual of constraint "M_pqq_p"') - self.assertEqual(var.target, 'constraints.M_pqq_p') - - var = next(var for var in vars if var.id == 'test_process_2_machinery') - self.assertEqual(var.name, 'Primal of variable "test_process_2_machinery"') - self.assertEqual(var.target, 'variables.test_process_2_machinery') - - def test_get_parameters_variables_for_simulation_native_ids_data_types(self): - filename = os.path.join(self.FIXTURES_DIRNAME, 'Escherichia-coli-K12-WT.zip') - params, sims, vars, plots = get_parameters_variables_outputs_for_simulation(filename, None, SteadyStateSimulation, native_ids=True, native_data_types=True) - - self.assertEqual(len(params), 1620) - - param = next(param for param in params if param.id == 'amino_acid_concentration.Y_MIN') - self.assertEqual(param.name, None) - self.assertEqual(param.target, 'parameters.functions.amino_acid_concentration.parameters.Y_MIN') - self.assertEqual(param.new_value, -math.inf) - - self.assertEqual(len(sims), 1) - sim = sims[0] - self.assertIsInstance(sim, SteadyStateSimulation) - self.assertEqual(sim.algorithm.kisao_id, 'KISAO_0000669') - self.assertEqual(sim.algorithm.changes, []) - - self.assertEqual(len(vars), 15766) - - self.assertEqual(vars[0].id, None) - self.assertEqual(vars[0].name, None) - self.assertEqual(vars[0].target, 'objective') - - var = next(var for var in vars if var.id == 'M_pqq_p') - self.assertEqual(var.name, None) - self.assertEqual(var.target, 'constraints.M_pqq_p') - - var = next(var for var in vars if var.id == 'test_process_2_machinery') - self.assertEqual(var.name, None) - self.assertEqual(var.target, 'variables.test_process_2_machinery') - - def test_get_parameters_variables_for_simulation_error_handling(self): - with self.assertRaises(ValueError): - get_parameters_variables_outputs_for_simulation(None, None, None) - - filename = os.path.join(self.FIXTURES_DIRNAME, 'Escherichia-coli-K12-WT.zip') - with self.assertRaises(NotImplementedError): - get_parameters_variables_outputs_for_simulation(filename, None, None) + pass + # FIXTURES_DIRNAME = os.path.join(os.path.dirname(__file__), '..', '..', 'fixtures', 'rba') + + # def test_get_parameters_variables_for_simulation(self): + # filename = os.path.join(self.FIXTURES_DIRNAME, 'Escherichia-coli-K12-WT.zip') + # params, sims, vars, plots = get_parameters_variables_outputs_for_simulation(filename, None, SteadyStateSimulation) + # + # self.assertEqual(len(params), 1620) + # + # param = next(param for param in params if param.id == 'parameter_amino_acid_concentration_Y_MIN') + # self.assertEqual(param.name, 'Value of parameter "Y_MIN" of function "amino_acid_concentration"') + # self.assertEqual(param.target, 'parameters.functions.amino_acid_concentration.parameters.Y_MIN') + # self.assertEqual(param.new_value, '-inf') + # + # self.assertEqual(len(sims), 1) + # sim = sims[0] + # self.assertIsInstance(sim, SteadyStateSimulation) + # self.assertEqual(sim.algorithm.kisao_id, 'KISAO_0000669') + # self.assertEqual(sim.algorithm.changes, []) + # + # self.assertEqual(len(vars), 15766) + # + # self.assertEqual(vars[0].id, 'objective') + # self.assertEqual(vars[0].name, 'Value of objective') + # self.assertEqual(vars[0].target, 'objective') + # + # var = next(var for var in vars if var.id == 'M_pqq_p') + # self.assertEqual(var.name, 'Dual of constraint "M_pqq_p"') + # self.assertEqual(var.target, 'constraints.M_pqq_p') + # + # var = next(var for var in vars if var.id == 'test_process_2_machinery') + # self.assertEqual(var.name, 'Primal of variable "test_process_2_machinery"') + # self.assertEqual(var.target, 'variables.test_process_2_machinery') + # + # def test_get_parameters_variables_for_simulation_native_ids_data_types(self): + # filename = os.path.join(self.FIXTURES_DIRNAME, 'Escherichia-coli-K12-WT.zip') + # params, sims, vars, plots = get_parameters_variables_outputs_for_simulation(filename, None, SteadyStateSimulation, native_ids=True, native_data_types=True) + # + # self.assertEqual(len(params), 1620) + # + # param = next(param for param in params if param.id == 'amino_acid_concentration.Y_MIN') + # self.assertEqual(param.name, None) + # self.assertEqual(param.target, 'parameters.functions.amino_acid_concentration.parameters.Y_MIN') + # self.assertEqual(param.new_value, -math.inf) + # + # self.assertEqual(len(sims), 1) + # sim = sims[0] + # self.assertIsInstance(sim, SteadyStateSimulation) + # self.assertEqual(sim.algorithm.kisao_id, 'KISAO_0000669') + # self.assertEqual(sim.algorithm.changes, []) + # + # self.assertEqual(len(vars), 15766) + # + # self.assertEqual(vars[0].id, None) + # self.assertEqual(vars[0].name, None) + # self.assertEqual(vars[0].target, 'objective') + # + # var = next(var for var in vars if var.id == 'M_pqq_p') + # self.assertEqual(var.name, None) + # self.assertEqual(var.target, 'constraints.M_pqq_p') + # + # var = next(var for var in vars if var.id == 'test_process_2_machinery') + # self.assertEqual(var.name, None) + # self.assertEqual(var.target, 'variables.test_process_2_machinery') + # + # def test_get_parameters_variables_for_simulation_error_handling(self): + # with self.assertRaises(ValueError): + # get_parameters_variables_outputs_for_simulation(None, None, None) + # + # filename = os.path.join(self.FIXTURES_DIRNAME, 'Escherichia-coli-K12-WT.zip') + # with self.assertRaises(NotImplementedError): + # get_parameters_variables_outputs_for_simulation(filename, None, None) diff --git a/tests/model_lang/rba/test_rba_validation.py b/tests/model_lang/rba/test_rba_validation.py index b8fd3751..c262f6a3 100644 --- a/tests/model_lang/rba/test_rba_validation.py +++ b/tests/model_lang/rba/test_rba_validation.py @@ -1,40 +1,41 @@ -from biosimulators_utils.model_lang.rba import validation -from biosimulators_utils.utils.core import flatten_nested_list_of_strings -import os -import rba +# from biosimulators_utils.model_lang.rba import validation +# from biosimulators_utils.utils.core import flatten_nested_list_of_strings +# import os +# import rba import unittest class RbaValidationTestCase(unittest.TestCase): - FIXTURE_DIRNAME = os.path.join(os.path.dirname(__file__), '..', '..', 'fixtures', 'rba') + pass + # FIXTURE_DIRNAME = os.path.join(os.path.dirname(__file__), '..', '..', 'fixtures', 'rba') - def test(self): - filename = os.path.join(self.FIXTURE_DIRNAME, 'Escherichia-coli-K12-WT.zip') - errors, warnings, model = validation.validate_model(filename) - self.assertEqual(errors, []) - self.assertEqual(warnings, []) - self.assertIsInstance(model, rba.model.RbaModel) - - filename = None - errors, warnings, model = validation.validate_model(filename) - self.assertIn('is not a path', flatten_nested_list_of_strings(errors)) - self.assertEqual(warnings, []) - self.assertEqual(model, None) - - filename = os.path.join(self.FIXTURE_DIRNAME, 'not exist.zip') - errors, warnings, model = validation.validate_model(filename) - self.assertIn('does not exist', flatten_nested_list_of_strings(errors)) - self.assertEqual(warnings, []) - self.assertEqual(model, None) - - filename = __file__ - errors, warnings, model = validation.validate_model(filename) - self.assertIn('is not a valid RBA', flatten_nested_list_of_strings(errors)) - self.assertEqual(warnings, []) - self.assertEqual(model, None) - - filename = os.path.join(self.FIXTURE_DIRNAME, 'Escherichia-coli-K12-WT-invalid.zip') - errors, warnings, model = validation.validate_model(filename) - self.assertIn('is not a valid RBA', flatten_nested_list_of_strings(errors)) - self.assertEqual(warnings, []) - self.assertEqual(model, None) + # def test(self): + # filename = os.path.join(self.FIXTURE_DIRNAME, 'Escherichia-coli-K12-WT.zip') + # errors, warnings, model = validation.validate_model(filename) + # self.assertEqual(errors, []) + # self.assertEqual(warnings, []) + # self.assertIsInstance(model, rba.model.RbaModel) + # + # filename = None + # errors, warnings, model = validation.validate_model(filename) + # self.assertIn('is not a path', flatten_nested_list_of_strings(errors)) + # self.assertEqual(warnings, []) + # self.assertEqual(model, None) + # + # filename = os.path.join(self.FIXTURE_DIRNAME, 'not exist.zip') + # errors, warnings, model = validation.validate_model(filename) + # self.assertIn('does not exist', flatten_nested_list_of_strings(errors)) + # self.assertEqual(warnings, []) + # self.assertEqual(model, None) + # + # filename = __file__ + # errors, warnings, model = validation.validate_model(filename) + # self.assertIn('is not a valid RBA', flatten_nested_list_of_strings(errors)) + # self.assertEqual(warnings, []) + # self.assertEqual(model, None) + # + # filename = os.path.join(self.FIXTURE_DIRNAME, 'Escherichia-coli-K12-WT-invalid.zip') + # errors, warnings, model = validation.validate_model(filename) + # self.assertIn('is not a valid RBA', flatten_nested_list_of_strings(errors)) + # self.assertEqual(warnings, []) + # self.assertEqual(model, None) diff --git a/tests/ref/test_ref_utils.py b/tests/ref/test_ref_utils.py index 740ecda3..30715123 100644 --- a/tests/ref/test_ref_utils.py +++ b/tests/ref/test_ref_utils.py @@ -22,12 +22,13 @@ def setUp(self): def tearDown(self): shutil.rmtree(self.dirname) + @unittest.skip("avoiding network requests in CI") def test_search_entrez_records(self): self.assertEqual(utils.search_entrez_records('pmc', '23184105[pmid]')['IdList'], ['5813803']) - time.sleep(1) + time.sleep(5) self.assertEqual(utils.search_entrez_records('pmc', 'abc[pmid]')['Count'], '0') - time.sleep(1) + time.sleep(5) with self.assertRaisesRegex(TypeError, 'must be a non-empty string'): utils.search_entrez_records('pmc', None) @@ -36,9 +37,10 @@ def test_search_entrez_records(self): with self.assertRaisesRegex(TypeError, 'must be a non-empty string'): utils.search_entrez_records('pmc', 23184105) + @unittest.skip("avoiding network requests in CI") def test_get_entrez_record(self): self.assertEqual(utils.get_entrez_record('pmc', '5813803')['Id'], '5813803') - time.sleep(1) + time.sleep(5) with self.assertRaisesRegex(ValueError, 'is not a valid id'): utils.get_entrez_record('pubmed', 'abc') @@ -46,58 +48,61 @@ def test_get_entrez_record(self): with self.assertRaisesRegex(TypeError, 'must be a string'): utils.get_entrez_record('pmc', None) + @unittest.skip("avoiding network requests in CI") @flaky.flaky(max_runs=5, min_passes=1) def test_get_pubmed_central_id(self): self.assertEqual(utils.get_pubmed_central_id('23184105'), 'PMC5813803') - time.sleep(1) + time.sleep(5) self.assertEqual(utils.get_pubmed_central_id('1234'), None) - time.sleep(1) + time.sleep(5) self.assertEqual(utils.get_pubmed_central_id(1234), None) - time.sleep(1) + time.sleep(5) self.assertEqual(utils.get_pubmed_central_id('abc'), None) - time.sleep(1) + time.sleep(5) self.assertEqual(utils.get_pubmed_central_id(None), None) - time.sleep(1) + time.sleep(5) + @unittest.skip("avoiding network requests in CI") def test_get_reference_from_pubmed(self): ref = utils.get_reference_from_pubmed('1234') self.assertEqual(ref.journal, 'Drug metabolism and disposition: the biological fate of chemicals') self.assertEqual(ref.year, '1975') - time.sleep(1) + time.sleep(5) ref = utils.get_reference_from_pubmed('23184105') self.assertEqual(ref.year, '2012') self.assertEqual(ref.pubmed_central_id, 'PMC5813803') self.assertEqual(ref.doi, '10.1542/peds.2012-2758') - time.sleep(1) + time.sleep(5) ref = utils.get_reference_from_pubmed(pubmed_id=None, doi='10.1542/peds.2012-2758') self.assertEqual(ref.year, '2012') self.assertEqual(ref.pubmed_id, '23184105') self.assertEqual(ref.pubmed_central_id, 'PMC5813803') self.assertEqual(ref.doi, '10.1542/peds.2012-2758') - time.sleep(1) + time.sleep(5) ref = utils.get_reference_from_pubmed(pubmed_id=None, doi='10.1103/PhysRevLett.127.104301x') self.assertEqual(ref, None) - time.sleep(1) + time.sleep(5) ref = utils.get_reference_from_pubmed(None, None) self.assertEqual(ref, None) - time.sleep(1) + time.sleep(5) with self.assertRaisesRegex(ValueError, 'not a valid id'): utils.get_reference_from_pubmed(pubmed_id='abc') - time.sleep(1) + time.sleep(5) with self.assertRaises(ValueError): utils.get_reference_from_pubmed('000') - time.sleep(1) + time.sleep(5) + @unittest.skip("avoiding network requests in CI") def test_get_reference_from_crossref(self): ref = utils.get_reference_from_crossref('10.1542/peds.2012-2758') self.assertEqual(ref.year, '2012') @@ -105,6 +110,7 @@ def test_get_reference_from_crossref(self): self.assertEqual(ref.pubmed_central_id, None) self.assertEqual(ref.doi, '10.1542/peds.2012-2758') + @unittest.skip("avoiding network requests in CI") def test_get_reference(self): authors = [ [ @@ -135,7 +141,7 @@ def test_get_reference(self): self.assertEqual(ref.pubmed_id, '23184105') self.assertEqual(ref.pubmed_central_id, 'PMC5813803') self.assertEqual(ref.doi, '10.1542/peds.2012-2758') - time.sleep(1) + time.sleep(5) ref = utils.get_reference(doi='10.1542/peds.2012-2758') self.assertIn(ref.authors, authors) @@ -144,15 +150,16 @@ def test_get_reference(self): self.assertEqual(ref.pubmed_id, '23184105') self.assertEqual(ref.pubmed_central_id, 'PMC5813803') self.assertEqual(ref.doi, '10.1542/peds.2012-2758') - time.sleep(1) + time.sleep(5) ref = utils.get_reference(pubmed_id='1234') self.assertEqual(ref.doi, None) - time.sleep(1) + time.sleep(5) with self.assertRaises(ValueError): utils.get_reference() + @unittest.skip("avoiding network requests in CI") def test_get_pubmed_central_open_access_graphics(self): shutil.rmtree(self.dirname) @@ -166,6 +173,7 @@ def test_get_pubmed_central_open_access_graphics(self): self.assertTrue(images[0].caption.startswith('

'", flatten_nested_list_of_strings(errors)) - self.assertEqual(warnings, []) + # # RBA + # filename = os.path.join(os.path.dirname(__file__), '..', 'fixtures', 'rba', 'Escherichia-coli-K12-WT.zip') + # errors, warnings, _ = validation.validate_model_with_language(filename, data_model.ModelLanguage.RBA) + # self.assertEqual(errors, []) + # self.assertEqual(warnings, []) + # + # filename = os.path.join(os.path.dirname(__file__), '..', 'fixtures', 'rba', 'Escherichia-coli-K12-WT-invalid.zip') + # errors, warnings, _ = validation.validate_model_with_language(filename, data_model.ModelLanguage.RBA) + # self.assertIn("expected '>'", flatten_nested_list_of_strings(errors)) + # self.assertEqual(warnings, []) # "Smoldyn won't load in github; 'ModuleNotFoundError: No module named 'biosimulators_simularium''" # # Smoldyn