This repository contains Jupyter notebooks with tutorials for the Python APIs for the simulation tools registered with BioSimulators and a Jupyter notebook server for running the notebooks.
The tutorials are located in the tutorials subdirectory. The README in this directory summarizes the content of the tutorials.
The easiest way to run the tutorials is with Binder. Simply open https://tutorial.biosimulators.org/ in your browser.
Run the following command to download the tutorials:
docker pull ghcr.io/biosimulators/tutorials
Run the following command to launch a Jupyter notebook server at http://localhost:8888 for the tutorials in this repository:
docker run -it --rm -p 8888:8888 ghcr.io/biosimulators/tutorials jupyter notebook --ip=0.0.0.0 --port=8888
Alternatively, run the following command to launch a Jupyter lab server at http://localhost:8888 for the tutorials in this repository:
docker run -it --rm -p 8888:8888 ghcr.io/biosimulators/tutorials jupyter lab --ip=0.0.0.0 --port=8888
This package is released under the MIT license.
This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York as part of the Center for Reproducible Biomodeling Modeling with assistance from the contributors listed here.
This package was developed with support from the National Institute for Bioimaging and Bioengineering (award P41EB023912).
Please contact us at [email protected] with any questions or comments.