From 4032278a02cbef87935abf5d682519797d64663a Mon Sep 17 00:00:00 2001 From: Logan Drescher <106617880+CodeByDrescher@users.noreply.github.com> Date: Tue, 27 Sep 2022 11:24:50 -0400 Subject: [PATCH 1/2] Fixed erroneous "KISAO_000019" references by adding another '0' --- .../expected-results.json | 2 +- tests/test_exec_cli.py | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution/expected-results.json b/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution/expected-results.json index 00e7273..0d908d9 100644 --- a/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution/expected-results.json +++ b/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution/expected-results.json @@ -4,7 +4,7 @@ "taskRequirements": [{ "modelFormat": "format_2585", "modelFormatFeatures": [], - "simulationAlgorithm": "KISAO_000019" + "simulationAlgorithm": "KISAO_0000019" }], "skippedSimulators": [], "expectedReports": [{ diff --git a/tests/test_exec_cli.py b/tests/test_exec_cli.py index c4d5c33..7b652af 100644 --- a/tests/test_exec_cli.py +++ b/tests/test_exec_cli.py @@ -35,7 +35,7 @@ def test_passes(self): task_requirements=[ biosimulators_test_suite.data_model.SedTaskRequirements( model_format='format_2585', - simulation_algorithm='KISAO_000019', + simulation_algorithm='KISAO_0000019', ) ], ), @@ -65,7 +65,7 @@ def find_cases(ids=None, results=results): 'case': { 'id': 'case-id', 'description': ('Required model formats and simulation algorithms for SED tasks:\n\n' - '* Format: `format_2585`\n Algorithm: `KISAO_000019`'), + '* Format: `format_2585`\n Algorithm: `KISAO_0000019`'), }, 'resultType': 'passed', 'duration': 1., @@ -89,7 +89,7 @@ def test_warnings(self): task_requirements=[ biosimulators_test_suite.data_model.SedTaskRequirements( model_format='format_2585', - simulation_algorithm='KISAO_000019', + simulation_algorithm='KISAO_0000019', ) ], ), @@ -122,7 +122,7 @@ def test_failed(self): task_requirements=[ biosimulators_test_suite.data_model.SedTaskRequirements( model_format='format_2585', - simulation_algorithm='KISAO_000019', + simulation_algorithm='KISAO_0000019', ) ], ), From d7d335586db02587aefc32a6f27b0b8b9755e987 Mon Sep 17 00:00:00 2001 From: biosimulatorsdaemon Date: Tue, 27 Sep 2022 15:28:38 +0000 Subject: [PATCH 2/2] chore: Updated COMBINE/OMEX archives [skip ci] --- ...-BMC-Syst-Biol-2017-iron-distribution.omex | Bin 110267 -> 110267 bytes 1 file changed, 0 insertions(+), 0 deletions(-) diff --git a/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution.omex b/examples/sbml-core/Parmar-BMC-Syst-Biol-2017-iron-distribution.omex index 52d779df3cc613052dd34ea64cc8bcd94ba1bb04..bab8f0e6317a78a5c8ef7057ba83b30eba18fdf7 100644 GIT binary patch delta 1035 zcmdmemu>f5HogFFW)=|!1_llW?P}}L&5L#`zG4BfHuAk>12Z-o?aE<E9@zmu(IV$B;UTH z5*bTsds=m7q?pX#J$KFhgNEEQW_I0AKX~Q(Bo>WquFMm!ji&0~4PJDT!8l5au_FFM z&Z+PfwP(+qUfXc^B*)IPJiZKmnlo1#r^hw=?$WC|To|a~x#XCJYWIVyd$<%9M3_9} zP@d>w5}jDTd&B2bVJqI(ad9u76rkp@;3oIHT-{4I-p1_j5{iH8^lN^?p_T0IH}3t- zyC#!ocwGx?VPE5;F38&T)8EkRQ0$_hk4xV)oZ5eeBeEf7 z;@nw5FHOoE?zX#VyLG!42r?U*d3&ZufBpN-*YUPHm$Dv9YdwSI{e79e+n(%OVwWIS z8?vhrPHbhbkT@b^s5L=s;oVh}nss)Rzm4u;c8lEj&AnjrySf|uv@_oM zDqq%KZe@SUT0`~!Y|HBNE5A(4Ihr)}#hKu{n}m-w=~iW5{yOcT_#xq#m#Ol1*IcQc zc5>8JAPde7TY%1M!<657O(r(AyErrGljt0JZsN?s3 z(GRhNIq|`siK+(8Q}YH8(ZX0uA1o<&3u)KtC+Scxk>nZRGp!A{sU{h+(a)% z+nyDc8k(nSe)wKBbdJ0;>zmk`q~zOSl7u`&~?i5{`lg? z$iN`ZGX3XTMn0A$jY1!%bFX8RQUGPG^9Qf;+-YZE@abe=;6^dG>C<$-wTzPBoHc#j zT1E-hC5`P>jMGoAWmJF&Cazf5HogFFW)=|!1_llWtI3HWn~h(+WMc{8;tbwA;S*yAFJpvB@MZqoWE*A% zhP>$$Rx-Y-|6CE?Cu!+_-1^nbqlT9p)r5@PEq{n5FPQkvP;AqKi5F{Lm948|KdzII zrdBtfH8|c|Xu%rIC5r1$hwL-)?^I(xlaa~tp!VQq&G?1iOpV`fW8za+eqv^9!f3HH zW!bqom8@njcfH^}?z&KAqSWFkI!)o9)fyU-F19H5xCmX$X{>*{>zsD?_E z%~WVi)34aJ)gyU(@n0>knyuU~>zg>2%gH2Ff8QM$y<}tk#Ip4P3w4!PHh*4HaaU10 zGFnh>gV9_U5shc|M>ROhJH3uh-^8r--$*%yagu9Umew${lp&IdVfs zb#Cs}@3+labLBOAb_j^nGd-#Kz0CC1q~DW%HB^2Hd@1Dh@^4xK+rMPx>v9hg1&WWX zaENLtTkXZS>A}6N`G$NFsYh?gA3VG3cjE7L3wD~<`mCSx>W{|z1ylayKYL@l{F3`7 z(eBVi#{Q+J-6XiTWvunR9?cfd;a{+HdTq((pzo1t*S{_3&+#(8sd~C4=JWOXwL7QU zTq?$_T+5qk9kr0?OV>aSTn=#jQcH%HgV1D{h!S0o^nxn(}#{V z9|a>PD{orHeeGmYw6#&^8@9JX$Idp0xvy;BY_YfNQFKFLowsV|Jg!V(`x`1wrmeT7 zQl4smh<(Ik^`vzr*PSkjM1!N#6K2^Q7O$^x(PI5#u;|%>B^sX}nui|eNiEF2<-MV+ zH#a)g+-zm%#S%c73I+7%bC86sR16rXzS^n|VX zI}4+0wR>9L0)-p=4Y-wa*nC`QdQAz=n zz|SAN%5$fkfx)Mffq@&C0bpQD<6E}r2i7u5DxxHQ9tH+cm=YkprSVfA!}R`jj1ovz zfsCDg7ibmhmd3S_~ORMz#z`TzyLG|4z@I^>|$WZP0Y(oOD!(Z ztH{j>@J6^CWdD8jVB^0p85j;TGBI$$^?~f4vYUaSD77HJsH9jg!xUK`$i^~@g2k`d n7#Pk^S6|1-5A^!ZrPHm}F=~mh0tFcu*nw~_&_OTO00{;F{YaBd