From 3b59e9ae57d4b27a9167c6a26e7055fedf8ee54c Mon Sep 17 00:00:00 2001
From: biosimulatorsdaemon <biosimulators.daemon@gmail.com>
Date: Tue, 14 Dec 2021 22:38:25 +0000
Subject: [PATCH] chore: Updating compiled documentation [skip ci]

---
 docs/_static/documentation_options.js               |  2 +-
 docs/about.html                                     |  2 +-
 docs/genindex.html                                  |  2 +-
 docs/index.html                                     | 12 ++++++------
 docs/installation.html                              |  2 +-
 docs/py-modindex.html                               |  2 +-
 docs/search.html                                    |  2 +-
 docs/searchindex.js                                 |  2 +-
 docs/source/biosimulators_test_suite.html           |  4 ++--
 docs/source/biosimulators_test_suite.results.html   |  4 ++--
 docs/source/biosimulators_test_suite.test_case.html |  2 +-
 docs/tutorial.html                                  |  2 +-
 12 files changed, 19 insertions(+), 19 deletions(-)
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
index 4fcd8bc..6117d7c 100644
--- a/docs/_static/documentation_options.js
+++ b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.1.79',
+    VERSION: '0.1.80',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/docs/about.html b/docs/about.html
index 3fa29a1..ab1baf6 100644
--- a/docs/about.html
+++ b/docs/about.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>About the BioSimulators test suite &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>About the BioSimulators test suite &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
diff --git a/docs/genindex.html b/docs/genindex.html
index f41b175..2f551c4 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>Index &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
diff --git a/docs/index.html b/docs/index.html
index 509cc69..9e1381c 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>BioSimulators test suite documentation &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>BioSimulators test suite documentation &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
@@ -176,17 +176,17 @@
                 
   <section id="biosimulators-test-suite-documentation">
 <h1>BioSimulators test suite documentation<a class="headerlink" href="#biosimulators-test-suite-documentation" title="Permalink to this headline">¶</a></h1>
-<p>The BioSimulators test suite is a tool for validating that biosimulation software tools implement the <a class="reference external" href="https://biosimulators.org/conventions">BioSimulators conventions for biosimulation tools</a>.</p>
+<p>The BioSimulators test suite is a tool for validating that biosimulation software tools implement the <a class="reference external" href="https://docs.biosimulations.org/concepts/conventions/">BioSimulators conventions for biosimulation tools</a>.</p>
 <p>The test suite is composed of two parts:</p>
 <ul>
 <li><p>A collection of example modeling projects. Each project is represented by a single <a class="reference external" href="https://combinearchive.org/">COMBINE/OMEX archive</a> that contains one or more simulation experiments described using the <a class="reference external" href="https://sed-ml.org">Simulation Experiment Description Markup Language (SED-ML)</a> and one or more models described using a format such as the <a class="reference external" href="https://bionetgen.org">BioNetGen Language (BNGL)</a>) or the <a class="reference external" href="http://sbml.org">Systems Biology Markup Language (SBML)</a>.</p></li>
 <li><p>Software for checking that biosimulation tools execute these projects according to the BioSimulators conventions.</p>
 <blockquote>
 <div><ul class="simple">
-<li><p>Simulation tools support the <a class="reference external" href="https://biosimulators.org/conventions/simulator-interfaces">BioSimulators standard command-line arguments</a>.</p></li>
-<li><p>Simulation tools support the <a class="reference external" href="https://biosimulators.org/conventions/simulator-images">BioSimulators conventions for Docker images</a>.</p></li>
-<li><p>Simulation tools follow the <a class="reference external" href="https://biosimulators.org/conventions/simulation-experiments">BioSimulators conventions for executing simulations described by SED-ML files in COMBINE/OMEX archives</a>.</p></li>
-<li><p>Simulation tools support the <a class="reference external" href="https://biosimulators.org/conventions/simulation-reports">BioSimulators conventions for the outputs of SED-ML files in COMBINE/OMEX archives</a>.</p></li>
+<li><p>Simulation tools support the <a class="reference external" href="https://docs.biosimulations.org/concepts/conventions/simulator-interfaces/">BioSimulators standard command-line arguments</a>.</p></li>
+<li><p>Simulation tools support the <a class="reference external" href="https://docs.biosimulations.org/concepts/conventions/simulator-images/">BioSimulators conventions for Docker images</a>.</p></li>
+<li><p>Simulation tools follow the <a class="reference external" href="https://docs.biosimulations.org/concepts/conventions/simulation-experiments/">BioSimulators conventions for executing simulations described by SED-ML files in COMBINE/OMEX archives</a>.</p></li>
+<li><p>Simulation tools support the <a class="reference external" href="https://docs.biosimulations.org/concepts/conventions/simulation-run-reports/">BioSimulators conventions for the outputs of SED-ML files in COMBINE/OMEX archives</a>.</p></li>
 </ul>
 </div></blockquote>
 </li>
diff --git a/docs/installation.html b/docs/installation.html
index 8e8034b..26e4a68 100644
--- a/docs/installation.html
+++ b/docs/installation.html
@@ -6,7 +6,7 @@
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     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Installation instructions &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>Installation instructions &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
diff --git a/docs/py-modindex.html b/docs/py-modindex.html
index 23221d3..300aa80 100644
--- a/docs/py-modindex.html
+++ b/docs/py-modindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Python Module Index &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>Python Module Index &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
diff --git a/docs/search.html b/docs/search.html
index 1f005f6..bd01fcc 100644
--- a/docs/search.html
+++ b/docs/search.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>Search &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
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index 73039d3..61685f8 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
@@ -1 +1 @@
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diff --git a/docs/source/biosimulators_test_suite.html b/docs/source/biosimulators_test_suite.html
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+++ b/docs/source/biosimulators_test_suite.html
@@ -6,7 +6,7 @@
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     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>biosimulators_test_suite package &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>biosimulators_test_suite package &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
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   <link href="../_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
@@ -870,7 +870,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <dl class="py attribute">
 <dt class="sig sig-object py" id="biosimulators_test_suite.exec_cli.BaseController.Meta.arguments">
-<span class="sig-name descname"><span class="pre">arguments</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">[(['specifications'],</span> <span class="pre">{'type':</span> <span class="pre">&lt;class</span> <span class="pre">'str'&gt;,</span> <span class="pre">'help':</span> <span class="pre">'Path</span> <span class="pre">or</span> <span class="pre">URL</span> <span class="pre">to</span> <span class="pre">the</span> <span class="pre">specifications</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">simulator'}),</span> <span class="pre">(['-c',</span> <span class="pre">'--test-case'],</span> <span class="pre">{'type':</span> <span class="pre">&lt;class</span> <span class="pre">'str'&gt;,</span> <span class="pre">'nargs':</span> <span class="pre">'+',</span> <span class="pre">'default':</span> <span class="pre">None,</span> <span class="pre">'dest':</span> <span class="pre">'case_ids',</span> <span class="pre">'help':</span> <span class="pre">&quot;Ids</span> <span class="pre">of</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">of</span> <span class="pre">evaluate</span> <span class="pre">(e.g.,</span> <span class="pre">'sedml.SimulatorSupportsModelAttributeChanges',</span> <span class="pre">'published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations')</span> <span class="pre">substrings</span> <span class="pre">of</span> <span class="pre">ids</span> <span class="pre">of</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">to</span> <span class="pre">evaluate</span> <span class="pre">(e.g.,</span> <span class="pre">'sedml.',</span> <span class="pre">'published_project.'</span> <span class="pre">to</span> <span class="pre">evaluate</span> <span class="pre">all</span> <span class="pre">SED-ML</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">or</span> <span class="pre">all</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">involving</span> <span class="pre">published</span> <span class="pre">projects).</span> <span class="pre">Default:</span> <span class="pre">evaluate</span> <span class="pre">all</span> <span class="pre">test</span> <span class="pre">cases&quot;}),</span> <span class="pre">(['--cli'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Command-line</span> <span class="pre">interface</span> <span class="pre">to</span> <span class="pre">use</span> <span class="pre">to</span> <span class="pre">execute</span> <span class="pre">the</span> <span class="pre">tests</span> <span class="pre">involving</span> <span class="pre">the</span> <span class="pre">simulation</span> <span class="pre">of</span> <span class="pre">COMBINE/OMEX</span> <span class="pre">archives</span> <span class="pre">rather</span> <span class="pre">than</span> <span class="pre">a</span> <span class="pre">Docker</span> <span class="pre">image'}),</span> <span class="pre">(['--synthetic-archives-dir'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Directory</span> <span class="pre">to</span> <span class="pre">save</span> <span class="pre">the</span> <span class="pre">synthetic</span> <span class="pre">COMBINE/OMEX</span> <span class="pre">archives</span> <span class="pre">generated</span> <span class="pre">by</span> <span class="pre">the</span> <span class="pre">test</span> <span class="pre">cases'}),</span> <span class="pre">(['--report'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Path</span> <span class="pre">to</span> <span class="pre">save</span> <span class="pre">a</span> <span class="pre">report</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">results</span> <span class="pre">in</span> <span class="pre">JSON</span> <span class="pre">format'}),</span> <span class="pre">(['--verbose'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">'If</span> <span class="pre">set,</span> <span class="pre">print</span> <span class="pre">the</span> <span class="pre">stdout</span> <span class="pre">and</span> <span class="pre">stderr</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">execution</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">tests</span> <span class="pre">in</span> <span class="pre">real</span> <span class="pre">time.'}),</span> <span class="pre">(['--work-dir'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Working</span> <span class="pre">directory</span> <span class="pre">for</span> <span class="pre">files</span> <span class="pre">for</span> <span class="pre">evaluating</span> <span class="pre">tests.</span> <span class="pre">This</span> <span class="pre">option</span> <span class="pre">enables</span> <span class="pre">intermediate</span> <span class="pre">files</span> <span class="pre">to</span> <span class="pre">be</span> <span class="pre">inspected</span> <span class="pre">rather</span> <span class="pre">than</span> <span class="pre">automatically</span> <span class="pre">cleaned</span> <span class="pre">up.'}),</span> <span class="pre">(['--do-not-validate-specs'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">&quot;If</span> <span class="pre">set,</span> <span class="pre">don't</span> <span class="pre">validate</span> <span class="pre">the</span> <span class="pre">specifications</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">simulator.&quot;}),</span> <span class="pre">(['--do-not-log-std-out-err'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">&quot;If</span> <span class="pre">set,</span> <span class="pre">don't</span> <span class="pre">use</span> <span class="pre">capturer</span> <span class="pre">to</span> <span class="pre">collect</span> <span class="pre">stdout</span> <span class="pre">and</span> <span class="pre">stderr.&quot;}),</span> <span class="pre">(['--dry-run'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">'If</span> <span class="pre">set,</span> <span class="pre">create</span> <span class="pre">synthetic</span> <span class="pre">archives,</span> <span class="pre">but</span> <span class="pre">do</span> <span class="pre">not</span> <span class="pre">use</span> <span class="pre">the</span> <span class="pre">simulator</span> <span class="pre">to</span> <span class="pre">execute</span> <span class="pre">them.'}),</span> <span class="pre">(['-v',</span> <span class="pre">'--version'],</span> <span class="pre">{'action':</span> <span class="pre">'version',</span> <span class="pre">'version':</span> <span class="pre">'0.1.79'})]</span></em><a class="reference external" href="https://github.com/biosimulators/Biosimulators_test_suite/blob/dev/biosimulators_test_suite/exec_cli.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_test_suite.exec_cli.BaseController.Meta.arguments" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">arguments</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">[(['specifications'],</span> <span class="pre">{'type':</span> <span class="pre">&lt;class</span> <span class="pre">'str'&gt;,</span> <span class="pre">'help':</span> <span class="pre">'Path</span> <span class="pre">or</span> <span class="pre">URL</span> <span class="pre">to</span> <span class="pre">the</span> <span class="pre">specifications</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">simulator'}),</span> <span class="pre">(['-c',</span> <span class="pre">'--test-case'],</span> <span class="pre">{'type':</span> <span class="pre">&lt;class</span> <span class="pre">'str'&gt;,</span> <span class="pre">'nargs':</span> <span class="pre">'+',</span> <span class="pre">'default':</span> <span class="pre">None,</span> <span class="pre">'dest':</span> <span class="pre">'case_ids',</span> <span class="pre">'help':</span> <span class="pre">&quot;Ids</span> <span class="pre">of</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">of</span> <span class="pre">evaluate</span> <span class="pre">(e.g.,</span> <span class="pre">'sedml.SimulatorSupportsModelAttributeChanges',</span> <span class="pre">'published_project.SimulatorCanExecutePublishedProject:sbml-core/Caravagna-J-Theor-Biol-2010-tumor-suppressive-oscillations')</span> <span class="pre">substrings</span> <span class="pre">of</span> <span class="pre">ids</span> <span class="pre">of</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">to</span> <span class="pre">evaluate</span> <span class="pre">(e.g.,</span> <span class="pre">'sedml.',</span> <span class="pre">'published_project.'</span> <span class="pre">to</span> <span class="pre">evaluate</span> <span class="pre">all</span> <span class="pre">SED-ML</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">or</span> <span class="pre">all</span> <span class="pre">test</span> <span class="pre">cases</span> <span class="pre">involving</span> <span class="pre">published</span> <span class="pre">projects).</span> <span class="pre">Default:</span> <span class="pre">evaluate</span> <span class="pre">all</span> <span class="pre">test</span> <span class="pre">cases&quot;}),</span> <span class="pre">(['--cli'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Command-line</span> <span class="pre">interface</span> <span class="pre">to</span> <span class="pre">use</span> <span class="pre">to</span> <span class="pre">execute</span> <span class="pre">the</span> <span class="pre">tests</span> <span class="pre">involving</span> <span class="pre">the</span> <span class="pre">simulation</span> <span class="pre">of</span> <span class="pre">COMBINE/OMEX</span> <span class="pre">archives</span> <span class="pre">rather</span> <span class="pre">than</span> <span class="pre">a</span> <span class="pre">Docker</span> <span class="pre">image'}),</span> <span class="pre">(['--synthetic-archives-dir'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Directory</span> <span class="pre">to</span> <span class="pre">save</span> <span class="pre">the</span> <span class="pre">synthetic</span> <span class="pre">COMBINE/OMEX</span> <span class="pre">archives</span> <span class="pre">generated</span> <span class="pre">by</span> <span class="pre">the</span> <span class="pre">test</span> <span class="pre">cases'}),</span> <span class="pre">(['--report'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Path</span> <span class="pre">to</span> <span class="pre">save</span> <span class="pre">a</span> <span class="pre">report</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">results</span> <span class="pre">in</span> <span class="pre">JSON</span> <span class="pre">format'}),</span> <span class="pre">(['--verbose'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">'If</span> <span class="pre">set,</span> <span class="pre">print</span> <span class="pre">the</span> <span class="pre">stdout</span> <span class="pre">and</span> <span class="pre">stderr</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">execution</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">tests</span> <span class="pre">in</span> <span class="pre">real</span> <span class="pre">time.'}),</span> <span class="pre">(['--work-dir'],</span> <span class="pre">{'default':</span> <span class="pre">None,</span> <span class="pre">'help':</span> <span class="pre">'Working</span> <span class="pre">directory</span> <span class="pre">for</span> <span class="pre">files</span> <span class="pre">for</span> <span class="pre">evaluating</span> <span class="pre">tests.</span> <span class="pre">This</span> <span class="pre">option</span> <span class="pre">enables</span> <span class="pre">intermediate</span> <span class="pre">files</span> <span class="pre">to</span> <span class="pre">be</span> <span class="pre">inspected</span> <span class="pre">rather</span> <span class="pre">than</span> <span class="pre">automatically</span> <span class="pre">cleaned</span> <span class="pre">up.'}),</span> <span class="pre">(['--do-not-validate-specs'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">&quot;If</span> <span class="pre">set,</span> <span class="pre">don't</span> <span class="pre">validate</span> <span class="pre">the</span> <span class="pre">specifications</span> <span class="pre">of</span> <span class="pre">the</span> <span class="pre">simulator.&quot;}),</span> <span class="pre">(['--do-not-log-std-out-err'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">&quot;If</span> <span class="pre">set,</span> <span class="pre">don't</span> <span class="pre">use</span> <span class="pre">capturer</span> <span class="pre">to</span> <span class="pre">collect</span> <span class="pre">stdout</span> <span class="pre">and</span> <span class="pre">stderr.&quot;}),</span> <span class="pre">(['--dry-run'],</span> <span class="pre">{'action':</span> <span class="pre">'store_true',</span> <span class="pre">'help':</span> <span class="pre">'If</span> <span class="pre">set,</span> <span class="pre">create</span> <span class="pre">synthetic</span> <span class="pre">archives,</span> <span class="pre">but</span> <span class="pre">do</span> <span class="pre">not</span> <span class="pre">use</span> <span class="pre">the</span> <span class="pre">simulator</span> <span class="pre">to</span> <span class="pre">execute</span> <span class="pre">them.'}),</span> <span class="pre">(['-v',</span> <span class="pre">'--version'],</span> <span class="pre">{'action':</span> <span class="pre">'version',</span> <span class="pre">'version':</span> <span class="pre">'0.1.80'})]</span></em><a class="reference external" href="https://github.com/biosimulators/Biosimulators_test_suite/blob/dev/biosimulators_test_suite/exec_cli.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_test_suite.exec_cli.BaseController.Meta.arguments" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
 <dl class="py attribute">
diff --git a/docs/source/biosimulators_test_suite.results.html b/docs/source/biosimulators_test_suite.results.html
index a246b71..7da255a 100644
--- a/docs/source/biosimulators_test_suite.results.html
+++ b/docs/source/biosimulators_test_suite.results.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>biosimulators_test_suite.results package &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>biosimulators_test_suite.results package &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="../_static/css/theme.css" rel="stylesheet">
   <link href="../_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
@@ -359,7 +359,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 <dl class="py class">
 <dt class="sig sig-object py" id="biosimulators_test_suite.results.data_model.TestResultsReport">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">biosimulators_test_suite.results.data_model.</span></span><span class="sig-name descname"><span class="pre">TestResultsReport</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_suite_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'0.1.79'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">results</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gh_issue</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gh_action_run</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_test_suite/blob/dev/biosimulators_test_suite/results/data_model.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_test_suite.results.data_model.TestResultsReport" title="Permalink to this definition">¶</a></dt>
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">biosimulators_test_suite.results.data_model.</span></span><span class="sig-name descname"><span class="pre">TestResultsReport</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">test_suite_version</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'0.1.80'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">results</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gh_issue</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gh_action_run</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/biosimulators/Biosimulators_test_suite/blob/dev/biosimulators_test_suite/results/data_model.py"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#biosimulators_test_suite.results.data_model.TestResultsReport" title="Permalink to this definition">¶</a></dt>
 <dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
 <p>A report of the results of executing the test suite with a simulation tool</p>
 <dl class="py attribute">
diff --git a/docs/source/biosimulators_test_suite.test_case.html b/docs/source/biosimulators_test_suite.test_case.html
index 9c164b6..d481abf 100644
--- a/docs/source/biosimulators_test_suite.test_case.html
+++ b/docs/source/biosimulators_test_suite.test_case.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>biosimulators_test_suite.test_case package &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>biosimulators_test_suite.test_case package &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="../_static/css/theme.css" rel="stylesheet">
   <link href="../_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
diff --git a/docs/tutorial.html b/docs/tutorial.html
index 171e181..e3d98ed 100644
--- a/docs/tutorial.html
+++ b/docs/tutorial.html
@@ -6,7 +6,7 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
-    <title>Tutorial &#8212; BioSimulators test suite 0.1.79 documentation</title>
+    <title>Tutorial &#8212; BioSimulators test suite 0.1.80 documentation</title>
     
   <link href="_static/css/theme.css" rel="stylesheet">
   <link href="_static/css/index.ff1ffe594081f20da1ef19478df9384b.css" rel="stylesheet">
