pyproject.toml

[tool.poetry]
name = "biosimulators-test-suite"
version = "0.2"
description = "Tools for validating that biosimulation tools are consistent with the BioSimulators standards"
authors = ["Center for Reproducible Modeling <info@biosimulators.org>"]
license = "MIT License (MIT)"
readme = "README.md"
homepage = "https://github.com/biosimulators/Biosimulators_test_suite"
repository = "https://github.com/biosimulators/Biosimulators_test_suite"
classifiers = [
        'Development Status :: 3 - Alpha',
        'Intended Audience :: Science/Research',
        'License :: OSI Approved :: MIT License',
        'Topic :: Scientific/Engineering :: Bio-Informatics',
]
keywords = ['systems', 'biology', 'modeling', 'simulation', 'BioSimulators']

[tool.poetry.dependencies]
python = "~3.10"

cement = "<=3.0.6"
docker = "^7.1.0"
natsort = "<=8.1.0"
pypdf2 = "<=2.8.1"
requests = "<=2.28.1"
python-dateutil = "<2.9"
pyyaml = "<5.4"
simplejson = "<3.17.0"
termcolor = "<1.2"
#biosimulators-utils = {git = "https://github.com/biosimulators/Biosimulators_utils.git", rev = "dev", extras = ["bngl", "cellml", "lems", "neuroml", "sbml", "simularium", "escher", "containers", "logging", "rba", "smoldyn"]}
biosimulators-utils = {version = ">=0.2", extras = ["bngl", "cellml", "lems", "neuroml", "sbml", "simularium", "escher", "containers", "logging", "smoldyn"]} # add back "rba" after it is fixed

[tool.poetry.group.dev.dependencies]
capturer = "^3.0"
docker = "^7.1.0"
bezier = "*"
flake8 = "^7.1.1"
pytest = "^8.3.2"
pytest-cov = "^5.0.0"
flaky = "^3.8.1"
jsonschema = "^4.23.0"

[tool.poetry.group.docs.dependencies]
pydata-sphinx-theme = "*"  # for building documentation
sphinx = ">=1.8"
sphinxprettysearchresults = { git = "https://github.com/biosimulators/sphinx-pretty-searchresults.git" }

[tool.poetry.group.test.dependencies]
setuptools = "^75.1.0"
pytest = "^8.3.2"
pytest-cov = "^5.0.0"
flake8 = "^7.1.1"
parameterized = "*"
biosimulators_simularium = "*"

[tool.poetry.scripts]
biosimulators-test-suite = "biosimulators_test_suite.exec_cli:main"

[build-system]
requires = ["poetry-core", "flake8", "pytest"]
build-backend = "poetry.core.masonry.api"