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Single Cell RNA-seq Analysis 2024 Schedule |
Workshop Pages for Students |
Single Cell RNA-seq Analysis 2024 Schedule |
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There will be an Amazon Web Services/Unix review session held on June 14 from 10AM-3PM EST. It will be held on Zoom, included in your registration fee, and is optional but highly recommended. The first module (10:10 - 11:10AM) will teach you how to connect to AWS so you can complete the workshop labs. We recommend all students attend this portion. The remaining sections will teach the basics of Unix and using the command line; we recommend that participants who do not have experience with the command line attend this portion.
| Time (Eastern) | June 20 | Time (Eastern) | June 21 |
|---|---|---|---|
| 8:30 | Arrivals & Check-in | 8:30 | Arrivals |
| 9:00 | Welcome (Nia Hughes) | 9:00 | Module 4: Normalization & Confounders (Tallulah Andrews) |
| 9:15 | Module 1: Introduction to Single Cell RNA-seq (Trevor Pugh) | 9:45 | Module 4 Lab |
| 10:00 | AWS Login & Setup | 10:45 | Break (15min) |
| 10:30 | Break (15min) | 11:00 | Module 5: Biological Analyses (Tallulah Andrews) |
| 10:45 | Module 2: Read Quantification Lecture + Lab (Tallulah Andrews) | 12:00 | Class Photo + Lunch (1h) |
| 11:45 | Lunch (1h) | 13:00 | Module 5 Lab |
| 12:45 | Module 2 (continued) | 14:45 | Break (15min) |
| 14:30 | Module 3: scRNAseq Data Structures & Quality Control (Tallulah Andrews) | 15:00 | Module 6: Data Set Integration (Gary Bader) |
| 15:15 | Break (15min) | 16:00 | Module 6 Lab |
| 15:30 | Module 3: Lab | 17:45 | Survey & Closing Remarks |
| 17:30 | End of Day 1 | 18:00 | Finished |