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layout permalink title header1 header2 image keywords description instructors length
workshop_main_2day
/scRNA_2024
Single Cell RNA-seq
Workshop Pages for Students
Single Cell RNA-seq 2024
/site_images/CBW_sc-rna-seq.jpg
Single Cell RNA-seq
Single Cell RNA-seq
2 days

Welcome

The course schedule can be found here

Pre-Workshop Materials

Pre-work including programs to install can be found here.

AWS Module

Connecting and properly using a cloud computing cluster at the CBW here

Class Photo

Single Cell RNA-seq Analysis Class of 2024

Course Materials

Please note that all Rmd files are download links. HTML answer files will not render correctly unless you download the file and then open it in a web browser.

Day 1

Welcome

Nia Hughes

Module 1

Trevor Pugh

Module 1 Lecture Slides
Module 1 Lecture Recording

Module 1 Lab Rmd - Empty | Answer Key | Answers (HTML)

Module 2

Tallulah Andrews

Module 2 Lecture Recording
Module 2 Lecture Slides

Module 2 Lab Rmd - Empty | Answer Key | Answers (HTML)

Module 3

Tallulah Andrews

Module 3 Lecture Recording
Module 3 Lecture Slides

Module 3 Lab Rmd - Empty | Answer Key | Answers (HTML)

Module 4

Tallulah Andrews

Module 4 Lecture Recording
Module 4 Lecture Slides

Module 4 Lab Rmd - Empty | Answer Key | Answers (HTML)

Module 5

Tallulah Andrews

Module 5 Lecture Recording
Module 5 Lecture Slides

Module 5 Lab Rmd - Empty | Answer Key | Answers (HTML)

Module 6

Gary Bader

Module 6 Lecture Recording
Module 6 Lecture Slides

Module 6 Lab Rmd - Empty | Answers (HTML)

Post-Workshop Materials

CourseData

Note that some of these files are quite large. If you have issues downloading them, try copying the link address, opening a new blank tab, and entering the URL into the new tab's address bar. If that fails, contact us at [email protected].

AMI

We have made our AWS AMI (Amazon Machine Image) publicly available. To launch your own instance, follow the instructions provided by Amazon on how to launch an EC2 instance from a custom Amazon Machine Image. Please note that you will need an AWS account to proceed, and that you will need to upload the CourseData files yourself.

Here are the details of the AMI:

  • AWS Region: us-east-1 (N. Virgina)
  • AMI type: public image
  • AMI name: CBW_scRNA_240619
  • AMI ID: ami-030071a6d882d1373

If you want to create and activate a new AWS account, please follow the instructions provided by Amazon.