check_compatibility_ilastik.yaml

name: check compatibility ilastik

concurrency: ilastik

on:
  push:
    branches:
      - main
    paths:
      - .github/workflows/check_compatibility_ilastik.yaml
      - scripts/check_compatibility_ilastik.py
      - scripts/upload_reports.py
  workflow_dispatch:
  schedule:
    - cron: 0 1 * * *  # update compatibility once a day

jobs:
  setup:
    runs-on: ubuntu-latest
    outputs:
      version_matrix: ${{ steps.cvm.outputs.version_matrix }}
    steps:
    - name: download version list
      run: wget https://files.ilastik.org/ilastik-versions-bmz.json
    - name: create version matrix
      id: cvm
      shell: python
      run: |
        import json
        import os

        with open("ilastik-versions-bmz.json") as f:
            vs = json.load(f)

        version_matrix = dict(include=[dict(v=v, env_url=f"https://files.ilastik.org/ilastik-{v}-Linux.yml") for v in vs])
        with open(os.environ["GITHUB_OUTPUT"], "a") as fh:
          print(f"version_matrix={version_matrix}", file=fh)

  generate-reports:
    runs-on: ubuntu-latest
    needs: setup
    environment: 'production'
    strategy:
      fail-fast: false
      matrix: ${{ fromJson(needs.setup.outputs.version_matrix) }}

    steps:
    - uses: actions/checkout@v4
    - run: wget https://${{vars.S3_HOST}}/${{vars.S3_BUCKET}}/${{vars.S3_FOLDER}}/all_versions_draft.json
    - run: wget https://${{vars.S3_HOST}}/${{vars.S3_BUCKET}}/${{vars.S3_FOLDER}}/all_versions.json
    - name: Download ilastik env
      run: wget --output-document env.yaml ${{ matrix.env_url }}
    - name: ignore unrelated packages
      run: sed -i '/multi-hypotheses-tracking-with-gurobi/d; /gurobi-symlink/d' env.yaml
    - name: Setup ilastik env
      uses: mamba-org/setup-micromamba@v1
      with:
        environment-file: env.yaml
        cache-downloads: true
        cache-environment: true
    - name: test drafts with ilastik ${{ matrix.v }}
      shell: bash -l {0}
      run: python scripts/check_compatibility_ilastik.py ${{ matrix.v }} all_versions_draft.json generated-reports
    - name: test published versions with ilastik ${{ matrix.v }}
      shell: bash -l {0}
      run: python scripts/check_compatibility_ilastik.py ${{ matrix.v }} all_versions.json generated-reports
    - uses: actions/upload-artifact@v4
      with:
        name: generated-reports-${{ matrix.v }}
        path: generated-reports

  upload-reports:
    needs: generate-reports
    environment: 'production'
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - uses: actions/setup-python@v5
      with:
        python-version: "3.12"
        cache: "pip" # caching pip dependencies
    - run: pip install .
    - uses: actions/download-artifact@v4
      with:
        merge-multiple: true
        path: generated-reports
    - run: python scripts/upload_reports.py generated-reports