collection_rdf_template.yaml

name: bioimage.io
type: collection
description: bioimage.io collection RDF
tags: []
version: 0.2.2
authors:
  - name: BioImgae.IO Team
documentation: README.md
git_repo: https://github.com/bioimage-io/collection-bioimage-io
icon: https://raw.githubusercontent.com/bioimage-io/bioimage.io/main/public/static/icons/android-chrome-384x384.png
cite:
  - text: todo cite BioImageIO
    url: https://bioimage.io
format_version: 0.2.1
config:
  splash_title: BioImage Model Zoo
  splash_subtitle: Advanced AI models in one-click
  splash_feature_list:
    - Integrate with Fiji, Ilastik, ImJoy
    - Try model instantly with BioEngine
    - Contribute your models via Zenodo
    - Link models to datasets and applications
  explore_button_text: Start Exploring
  background_image: static/img/zoo-background.svg
  resource_types:
    - model
    - application
    - dataset
  default_type: model
  url_root: >-
    https://raw.githubusercontent.com/bioimage-io/collection-bioimage-io/gh-pages
  partners:
    - id: bioimageio
      repository: bioimage-io/bioimage-io-resources
      branch: main
      collection_file_name: collection.bioimage.io.yaml
    - id: zero
      repository: HenriquesLab/ZeroCostDL4Mic
      branch: master
      collection_file_name: manifest.bioimage.io.yaml
    - id: deepimagej
      repository: deepimagej/models
      branch: master
      collection_file_name: manifest.bioimage.io.yaml
      test_summaries:
        repository: deepimagej/CI-deepimagej-bioimage-io
        deploy_branch: gh-pages
        deploy_folder: .
        workflow: test_bioimageio_resources.yaml
        workflow_ref: refs/heads/master
    - id: fiji
      repository: bioimage-io/fiji-bioimage-io
      branch: master
      collection_file_name: manifest.bioimage.io.yaml
    - id: imjoy
      repository: imjoy-team/bioimage-io-resources
      branch: master
      collection_file_name: collection.bioimage.io.yaml
    - id: ilastik
      repository: ilastik/bioimage-io-resources
      branch: main
      collection_file_name: collection.yaml
      test_summaries:
        repository: ilastik/bioimage-io-resources
        deploy_branch: gh-pages
        deploy_folder: test_summaries
        workflow: test_bioimageio_resources.yaml
        workflow_ref: refs/heads/main
    - id: hpa
      repository: CellProfiling/HPA-model-zoo
      branch: master
      collection_file_name: manifest.bioimage.io.yaml
    - id: icy
      repository: Icy-imaging/icy-bioimage-io
      branch: main
      collection_file_name: collection.yaml
    - id: qupath
      repository: qupath/qupath-bioimage-io
      branch: main
      collection_file_name: collection.yaml
    - id: stardist
      repository: stardist/stardist-bioimage-io
      branch: main
      collection_file_name: collection.yaml
    - id: biapy
      repository: BiaPyX/BiaPy-bioimage-io
      branch: main
      collection_file_name: collection.yaml
    - id: dl4miceverywhere
      repository: HenriquesLab/DL4MicEverywhere-bioimage-io
      branch: main
      collection_file_name: collection.yaml
collection: []