-
Notifications
You must be signed in to change notification settings - Fork 3.2k
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Potential issue in QUAST conda recipe - dependency minimap2 #50104
Comments
An update on the possible problem linked to minimap2. I tried resolving the issue by removing minimap2 from the first environment mentioned above (the broken environment) and installing it again as minimap2=2.27 and minimap2=2.26, but I keep getting the same error message. I suspect that the problem is caused by something else. EDIT: if I avoid the use of the |
Hello everyone,
I am experiencing an issue with the new QUAST conda recipe. I saw the recipe was updated two months ago, even if QUAST version remains 5.2.0.
This is what is happening with the new conda recipe (installed a couple of days ago):
In this environment minimap2 version is
2.28-r1209
.In an older separate QUAST environment, I have the same warning about the version of minimap2, but it doesn't fail to align contigs to the reference:
Here minimap2 version is
2.26-r1175
.The data I'm analysing with the two different environments is exactly the same.
I don't know if anyone else experienced the same issue. With the older environment I get all the outputs.
Thank you in advance if you manage to look into this.
Lia
The text was updated successfully, but these errors were encountered: