diff --git a/phylophlan/phylophlan_assign_sgbs.py b/phylophlan/phylophlan_assign_sgbs.py index 5926905..a5c0dba 100755 --- a/phylophlan/phylophlan_assign_sgbs.py +++ b/phylophlan/phylophlan_assign_sgbs.py @@ -557,6 +557,9 @@ def prefiltering_pasting(output_prefix, input_extension, chocophlan_list, databa inpf = output_prefix + "_prefiltering/{}_genomes_inputs_list.txt" for i in os.listdir(os.path.join(output_prefix + "_prefiltering/pref_dbs")): + if verbose: + t0 = time.time() + info('Pasting inputs\n') table = pd.read_csv(os.path.join(output_prefix + "_prefiltering/pref_dbs"+'/'+i), sep='\t',names=['sgb','mag','dist','pvalue','hits']) mags_full = list(table['mag'].unique())