From 2cb7af4d73df96a151d341ac88d9d4aeb19cab35 Mon Sep 17 00:00:00 2001 From: Jiaxian Shen <46509480+jxshen311@users.noreply.github.com> Date: Fri, 12 Jul 2024 16:33:09 -0400 Subject: [PATCH 1/2] change typo --- R/viz.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/viz.R b/R/viz.R index a44947e..bfd6f4e 100644 --- a/R/viz.R +++ b/R/viz.R @@ -1,6 +1,6 @@ #!/usr/bin/env Rscript ############################################################################### -# MaAsLin2 visualizations +# MaAsLin3 visualizations # Copyright (c) 2018 Harvard School of Public Health From 1b11a5ccac28fd257f2e9d22fa71b1c9a1542398 Mon Sep 17 00:00:00 2001 From: Jiaxian Shen <46509480+jxshen311@users.noreply.github.com> Date: Fri, 12 Jul 2024 16:34:18 -0400 Subject: [PATCH 2/2] change typo --- R/viz.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/R/viz.R b/R/viz.R index bfd6f4e..a28347b 100644 --- a/R/viz.R +++ b/R/viz.R @@ -28,7 +28,7 @@ for (lib in c('dplyr', 'ggplot2', 'viridis', "grid", 'RColorBrewer', 'patchwork' suppressPackageStartupMessages(require(lib, character.only = TRUE)) } -# MaAsLin2 theme based on Nature journal requirements +# MaAsLin3 theme based on Nature journal requirements nature_theme <- function(x_axis_labels, y_label) { # set default text format based on categorical and length angle = NULL @@ -62,7 +62,7 @@ nature_theme <- function(x_axis_labels, y_label) { ) } -# MaAsLin2 summary_plot function for overall view of associations +# MaAsLin3 summary_plot function for overall view of associations maaslin3_summary_plot <- function( merged_results,