diff --git a/R/maaslin3.R b/R/maaslin3.R index e33f93d..9bcfcaf 100755 --- a/R/maaslin3.R +++ b/R/maaslin3.R @@ -780,7 +780,7 @@ maaslin_log_arguments <- function(input_data, cores = 1, save_models = FALSE, verbosity = 'FINEST', - summary_plot_balanced=FALSE) { + summary_plot_balanced = FALSE) { # Allow for lower case variables normalization <- toupper(normalization) transform <- toupper(transform) @@ -2436,7 +2436,7 @@ maaslin_plot_results_from_output <- function(output, heatmap_vars = NULL, plot_associations = TRUE, max_pngs = 30, - balanced=FALSE) { + balanced = FALSE) { # create an output folder and figures folder if it does not exist if (!file.exists(output)) { @@ -2624,7 +2624,7 @@ maaslin3 <- function(input_data, cores = 1, save_models = FALSE, verbosity = 'FINEST', - summary_plot_balanced=FALSE) { + summary_plot_balanced = FALSE) { logging::logReset() # Allow for lower case variables @@ -2682,7 +2682,7 @@ maaslin3 <- function(input_data, cores, save_models, verbosity, - balanced + summary_plot_balanced ) # Read data in