DESCRIPTION

Package: SparseDOSSA2
Type: Package
Title: A Statistical Model for Describing and Simulating Microbial Community Profiles
Version: 0.99.2
Author: Siyuan Ma
Maintainer: Siyuan Ma <syma.research@gmail.com>
Description: SparseDOSSA 2 is an R package for fitting to and the simulation of realistic microbial
    abundance observations. It provides functionlaities for:
    a) generation of synthetic microbial observations, based on either pre-fitted template that the package provides, or user-trained results.
    b) spiking-in of associations with metadata variables or between feature pairs, for e.g. benchmarking or power analysis purposes.
    c) fitting the SparseDOSSA 2 model to real-world microbial abundance observations.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.2
Depends:
  ks,
  mvtnorm,
  huge,
  future.apply,
  magrittr,
  truncnorm,
  igraph,
  Rmpfr
VignetteBuilder: knitr
Suggests:
  testthat (>= 2.1.0),
  cubature,
  BiocStyle,
  knitr,
  rmarkdown
biocViews: Metagenomics, Microbiome, StatisticalMethod