3.0.4

StrainPhlAn updated to be compatible with latest BioPython release

3.0.3

• Several bugfixes
• Inclusion of a Newick tree for UniFrac distance calculation and a convenience script under metaphlan/utils

2.8.1

Set theme jekyll-theme-minimal

3.0.2

Remove function

3.0.1

Updated version number

3.0

What's new in MetaPhlAn 3

• New MetaPhlAn marker genes extracted with a newer version of ChocoPhlAn based on UniRef
• Estimation of metagenome composed by unknown microbes with parameter --unknown_estimation
• Automatic retrieval and installation of the latest MetaPhlAn database with parameter --index latest
• Virus profiling with --add_viruses
• Calculation of metagenome size for improved estimation of reads mapped to a given clade
• Inclusion of NCBI taxonomy ID in the output file
• CAMI (Taxonomic) Profiling Output Format included
• Removal of reads with low MAPQ values