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[BUG]:Mamba installation - transaction Error #224

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WUD2018 opened this issue Mar 20, 2024 · 1 comment
Closed

[BUG]:Mamba installation - transaction Error #224

WUD2018 opened this issue Mar 20, 2024 · 1 comment

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@WUD2018
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WUD2018 commented Mar 20, 2024

Describe the bug
Mamba installation - transaction Error
Please suggest whether this error affects the results or not?
Thanks for your great efforts to develop mpa (I've been using it for more than 4 year since mpa2)

To Reproduce
Steps to reproduce the behavior:
N.A.

Screenshots
Here is the error report (pic). But the installed metaphlan still works.

trans

Platform (please complete the following information):

  • Version: MetaPhlAn version 4.1.0 (23 Aug 2023)
  • Download source: mamba create -n mpa4 -c conda-forge -c bioconda python=3.7 metaphlan

Additional context

  1. The conda installation is too (Unbearable) slow...

  2. The pip installed metaphlen encounters NO issue (suggested):
    (1) installation:
    conda create --name mpa
    conda activate mpa
    pip install metaphlan
    conda install bioconda::bowtie2 (pip install not successfull)

(2) test run:
metaphlan Win.TSwstu03.hrm_1.fastq,Win.TSwstu03.hrm_2.fastq --bowtie2out metagenome.bowtie2.bz2 --nproc 50 --input_type fastq -o profiled_metagenome.txt --bowtie2db /home/dell/Database/MetaPhlAn4

(3) version: 4.1.0 (23 Aug 2023)

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Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.

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