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NOT getting to run it #215

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sekhwal opened this issue Sep 5, 2023 · 1 comment
Closed

NOT getting to run it #215

sekhwal opened this issue Sep 5, 2023 · 1 comment

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@sekhwal
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sekhwal commented Sep 5, 2023

Hi,
I am trying to run MetaPhlAn 3.0, but I am not getting to run it. It is showing the following error. I created conda environment and installed MetaPhlAn using pip, downloaded the database (metaphlan --install --bowtie2db bowtie2db/) and add in my environment PATH.
run command:

metaphlan assembly.fasta --input_type fasta > M25.txt

Thanks!

--error
No MetaPhlAn BowTie2 database found (--index option)!
Expecting location bowtie2db
@github-actions
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github-actions bot commented Sep 5, 2023

Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.

@github-actions github-actions bot closed this as completed Sep 5, 2023
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@sekhwal