diff --git a/metaphlan/utils/fix_relab_mpa4.py b/metaphlan/utils/fix_relab_mpa4.py index 1273593..c0c7f50 100755 --- a/metaphlan/utils/fix_relab_mpa4.py +++ b/metaphlan/utils/fix_relab_mpa4.py @@ -61,7 +61,7 @@ def fix_relab_mpa4(input, output): for line in rf: if line.startswith('#mpa_v'): release = line.strip()[1:] - wf.write('{}_fixed\n'.format(line.strip())) + wf.write('{}_202403\n'.format(line.strip())) elif line.startswith('#') or line.startswith('UNCLASSIFIED'): wf.write(line) else: diff --git a/metaphlan/utils/oct22_fix_tax.tsv b/metaphlan/utils/oct22_fix_tax.tsv index 0b9cc66..92f6fd6 100644 --- a/metaphlan/utils/oct22_fix_tax.tsv +++ b/metaphlan/utils/oct22_fix_tax.tsv @@ -2120,12 +2120,9 @@ k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_B|t__SGB1613 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_B|t__SGB1613 2|976|200643|171549|171552|838|165179| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_C|t__SGB1644 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_C|t__SGB1644 2|976|200643|171549|171552|838|165179| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_D|t__SGB1636 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_D|t__SGB1636 2|976|200643|171549|171552|838|165179| -k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_clade_D|t__SGB1635 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_clade_D|t__SGB1635 2|976|200643|171549|171552|838|165179| -k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_hominis|t__SGB1617 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_hominis|t__SGB1617 2|976|200643|171549|171552|838|2518605| -k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_hominis|t__SGB1615 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_hominis|t__SGB1615 2|976|200643|171549|171552|838|2518605| k__Bacteria|p__Firmicutes|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Catenibacterium|s__Candidatus_Catenibacterium_tridentinum|t__SGB6783 k__Bacteria|p__Firmicutes|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Catenibacterium|s__Candidatus_Catenibacterium_tridentinum|t__SGB6783 2|1239|526524|526525|128827|135858|2292991| k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiales_unclassified|g__Lawsonibacter|s__Lawsonibacter_asaccharolyticus|t__SGB15154 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiales_unclassified|g__Lawsonibacter|s__Lawsonibacter_asaccharolyticus|t__SGB15154 2|1239|186801|186802||2172004|2108523| -k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Ruminococcaceae|g__Candidatus_Cibionibacter|s__Candidatus_Cibionibacter_quicibialis|t__SGB15286 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Ruminococcaceae|g__Candidatus_Cibionibacter|s__Candidatus_Cibionibacter_quicibialis|t__SGB15286 2|976|200643|171549|171550|2527773|2500537| +k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Ruminococcaceae|g__Candidatus_Cibionibacter|s__Candidatus_Cibionibacter_quicibialis|t__SGB15286 k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Ruminococcaceae|g__Candidatus_Cibionibacter|s__Candidatus_Cibionibacter_quicibialis|t__SGB15286 2|1239|186801|186802|541000|2527773|2500537| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_M|t__SGB20113 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_M|t__SGB20113 2|976|200643|171549|171552|838|165179| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_I|t__SGB1623 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_I|t__SGB1623 2|976|200643|171549|171552|838|165179| k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_J|t__SGB20123 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella_copri_clade_J|t__SGB20123 2|976|200643|171549|171552|838|165179|