diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
deleted file mode 100644
index 01f9a44..0000000
--- a/.github/workflows/pythonpackage.yml
+++ /dev/null
@@ -1,40 +0,0 @@
-# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
-# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
-
-name: Build MetaPhlAn package
-
-on:
-  push:
-    branches: [ master, "3.0"]
-  pull_request:
-    branches: [ master, "3.0" ]
-
-jobs:
-  build:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: [ 3.6, 3.7, 3.8]
-
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v1
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        sudo apt install bowtie2 muscle ncbi-blast+ raxml
-        python -m pip install --upgrade pip
-        pip install .
-#     - name: Lint with flake8
-#       run: |
-#         pip install flake8
-#         # stop the build if there are Python syntax errors or undefined names
-#         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-#         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-#         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Test with pytest
-      run: |
-        pip install pytest
-        pytest