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Issue with windows system: cannot open file './Scratch/tmp_1/maaslin2.log #42

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AlbertSL98 opened this issue Mar 25, 2024 · 1 comment

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@AlbertSL98
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Hi, I am trying to run Maaslin2 on Windows system using following command

Maaslin2(
input_data = otu.tab,
input_metadata = metadata,
output = 'C:\Users\lenovo\Desktop\tmp'
#transform = "AST",
fixed_effects = c('HBP','X1','PA', 'age', 'dietscore'),
random_effects = c('study'),
#normalization = 'NONE',
plot_heatmap = F,
plot_scatter = F,
standardize = FALSE)

Where it fails due to:

Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
cannot open file './Scratch/tmp_1/maaslin2.log': No such file or directory

However, it works if I run it on linux system, so I am wandering whether Maaslin2 cannot run on Windows system

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Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.

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