From 622df7efe46fa0707275bdfe70d9c54647bfbe9f Mon Sep 17 00:00:00 2001 From: YancongZhang Date: Thu, 19 Aug 2021 17:01:32 -0400 Subject: [PATCH] Added running demo --- test/run_demo.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/run_demo.sh b/test/run_demo.sh index 6555dcf..929daf5 100644 --- a/test/run_demo.sh +++ b/test/run_demo.sh @@ -1,2 +1,2 @@ -MTXmodel.R ../inst/extdata/HMP2_pwyRNA.tsv ../inst/extdata/HMP2_metadata.tsv demo_output --min_abundance 0 --min_prevalence 0.0 --max_significance 0.25 --min_variance 0.0 --correction BH --standardize TRUE --normalization NONE --transform LOG --analysis_method LM --cores 1 --fixed_effects diagnosis,dysbiosisCD,dysbiosisUC,dysbiosisnonIBD,antibiotics,age --random_effects subject,site --plot_heatmap FALSE --plot_scatter FALSE --reference diagnosis,nonIBD --rna_dna_flt local --input_dnadata ../inst/extdata/HMP2_pwyDNA.tsv +MTXmodel.R ../inst/extdata/HMP2_pwyRNA.tsv ../inst/extdata/HMP2_metadata.tsv demo_output --min_abundance 0 --min_prevalence 0.0 --max_significance 0.25 --min_variance 0.0 --correction BH --standardize TRUE --normalization NONE --transform LOG --analysis_method LM --cores 1 --fixed_effects diagnosis,dysbiosisCD,dysbiosisUC,dysbiosisnonIBD,antibiotics,age --random_effects subject,site --plot_heatmap FALSE --plot_scatter FALSE --reference diagnosis,nonIBD --rna_dna_flt semi_strict --input_dnadata ../inst/extdata/HMP2_pwyDNA.tsv