A compiled version of WHInter should be placed in ./WHInter.
Rscript regenerate_data.R
bash bench_pint_whinter.sh
Rscript collect_bench_stats.R
Rscript plot.R
Requires the package normInfectX.
Rscript process_ifx.R
Assumes a table of SNVs and MIC is present in "binary_table_T_anonymised.csv".
unxz binary_table_T_anonymised.csv.xz
./process_bacteria_data.R
./process_antibio_ifx.R