From 10c611102b8c5d0fa865d29cac8c2b21a40de091 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
<66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 16 Dec 2024 21:29:13 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
updates:
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v5.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v5.0.0)
- [github.com/codespell-project/codespell: v2.2.4 → v2.3.0](https://github.com/codespell-project/codespell/compare/v2.2.4...v2.3.0)
- [github.com/psf/black: 23.3.0 → 24.10.0](https://github.com/psf/black/compare/23.3.0...24.10.0)
---
.pre-commit-config.yaml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 980d4299..867e5fe5 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -2,7 +2,7 @@
# See https://pre-commit.com/hooks.html for more hooks
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.4.0
+ rev: v5.0.0
hooks:
- id: trailing-whitespace
- id: end-of-file-fixer
@@ -11,13 +11,13 @@ repos:
- id: check-case-conflict
- repo: https://github.com/codespell-project/codespell
- rev: v2.2.4
+ rev: v2.3.0
hooks:
- id: codespell
args: ["--config=.codespellrc"]
- repo: https://github.com/psf/black
- rev: 23.3.0
+ rev: 24.10.0
hooks:
- id: black
name: black
From 16661ab7750b19c09f0080f8e6a607f3e53a61e6 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
<66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 16 Dec 2024 21:29:20 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
---
_data/advisory.yml | 2 +-
_data/converters.yml | 17 ++++++++---------
_includes/steering_group_election_section.html | 10 +++++-----
_pages/acknowledgments.md | 8 ++++----
_posts/2024-01-11-Steering-Group-minutes.md | 12 ++++++------
tools/bep_gantt_html_create.py | 1 +
tools/bep_gantt_mermaid_insert.py | 1 +
tools/convert_to_md.py | 1 +
8 files changed, 27 insertions(+), 25 deletions(-)
diff --git a/_data/advisory.yml b/_data/advisory.yml
index f64a5d92..0748d013 100644
--- a/_data/advisory.yml
+++ b/_data/advisory.yml
@@ -44,7 +44,7 @@
# leads:
- name: Cyril Pernet
git: CPernet
- other_beps: ["BEP018"]
+ other_beps: ["BEP018"]
- name: Stefan Appelhoff
git: sappelhoff
- name: Robert Oostenveld
diff --git a/_data/converters.yml b/_data/converters.yml
index 8ec2267e..9ef85173 100644
--- a/_data/converters.yml
+++ b/_data/converters.yml
@@ -126,8 +126,8 @@
- MRI # not sure
expected_input:
language:
- comment:
- Convert OpenfMRI dataset to BIDS. (Possibly deprecated due to openfmri.org moving
+ comment:
+ Convert OpenfMRI dataset to BIDS. (Possibly deprecated due to openfmri.org moving
to openneuro.org).
- name: ReproIn
@@ -366,15 +366,14 @@
- Python
documentation: https://github.com/mercure-imaging/mercure-dcm2bids
comment: |
- A containerized app that can be used to perform BIDS conversion of
- DICOM studies sent directly to mercure from a scanner or PACS. mercure
- is an open-source DICOM orchestration platform that can integrate
- containerized apps into clinical workflows. It has a graphical user
- interface making it easy to setup and manage BIDS configurations for
+ A containerized app that can be used to perform BIDS conversion of
+ DICOM studies sent directly to mercure from a scanner or PACS. mercure
+ is an open-source DICOM orchestration platform that can integrate
+ containerized apps into clinical workflows. It has a graphical user
+ interface making it easy to setup and manage BIDS configurations for
multiple protocols. The Dcm2Bids tool is used for conversion.
distribution:
- name: dockerhub
- url: https://hub.docker.com/r/mercureimaging/mercure-dcm2bids
+ url: https://hub.docker.com/r/mercureimaging/mercure-dcm2bids
GUI: true
license: GPL-3.0
-
diff --git a/_includes/steering_group_election_section.html b/_includes/steering_group_election_section.html
index 662e3cd8..ceb508fa 100644
--- a/_includes/steering_group_election_section.html
+++ b/_includes/steering_group_election_section.html
@@ -8,12 +8,12 @@ BIDS steering group election
BIDS steering group election
- This year's election has started.
-
+ This year's election has started.
+
If you are a BIDS contributor,
-
+
please check your BIDS email for an opavote voting link to cast your vote.
-
+
The polls will open on Monday, October 21st and close on Friday, November 1st
```
--
+-
**BIDS Steering Committee Theme for the year: Improve adoption**
@@ -211,12 +211,12 @@ Github project is established with many ideas but there aren\'t many
- Had questions, but could not find answers
- -
+ -
- [[Yaroslav Halchenko]{.underline}](mailto:yarikoptic@gmail.com)
will create a pull request on github:
[[https://github.com/bids-standard/bids-starter-kit/pull/376]{.underline}](https://github.com/bids-standard/bids-starter-kit/pull/376)
- -
+ -
- -
+ -
diff --git a/tools/bep_gantt_html_create.py b/tools/bep_gantt_html_create.py
index a4b681de..d52362c8 100644
--- a/tools/bep_gantt_html_create.py
+++ b/tools/bep_gantt_html_create.py
@@ -2,6 +2,7 @@
Also include a timeline of the main BIDS events.
"""
+
from __future__ import annotations
from datetime import datetime
diff --git a/tools/bep_gantt_mermaid_insert.py b/tools/bep_gantt_mermaid_insert.py
index b8fa65ad..e8265b15 100644
--- a/tools/bep_gantt_mermaid_insert.py
+++ b/tools/bep_gantt_mermaid_insert.py
@@ -1,4 +1,5 @@
"""Creates a Gantt chart for the completed BEPs"""
+
from __future__ import annotations
from pathlib import Path
diff --git a/tools/convert_to_md.py b/tools/convert_to_md.py
index e9116fc3..2606d4a9 100644
--- a/tools/convert_to_md.py
+++ b/tools/convert_to_md.py
@@ -10,6 +10,7 @@
- using the html version of the tables instead of the markdown version
because the pandoc version of the markdown tables is not very good
"""
+
import datetime
from pathlib import Path