diff --git a/docs/blog/posts/2023-05-25-steering-group-minutes.md b/docs/blog/posts/2023-05-25-steering-group-minutes.md index 1729ab4d..6e14a970 100644 --- a/docs/blog/posts/2023-05-25-steering-group-minutes.md +++ b/docs/blog/posts/2023-05-25-steering-group-minutes.md @@ -135,8 +135,7 @@ Add a list of BIDS ignore files: Should we reach out to the new **Imaging Neuroscience** journal while they are still developing their platform? -Potentially reach out to someone on their [[editorial -board]](https://janeway.imaging-neuroscience.org/editorialteam/) +Potentially reach out to someone on their [editorial board](https://direct.mit.edu/imag/pages/editorial-info) - possible Thomas Yeo, Damian Fair diff --git a/docs/blog/posts/bids-news-september-2024.md b/docs/blog/posts/bids-news-september-2024.md index a4281ade..6c22394a 100644 --- a/docs/blog/posts/bids-news-september-2024.md +++ b/docs/blog/posts/bids-news-september-2024.md @@ -47,7 +47,7 @@ You can find more [about BIDS governance](https://bids-website.readthedocs.io/en ## Recent venues BIDS presented -BIDS continues to be featured in different venues. Our very own maintainer extraordinaire, Rémi Gau, was recently featured in a yet-to-be-released podcast. The BIDS Town Hall was featured at OHBM again this year in June. For a full recount refer to [this blog post](https://bids-website.readthedocs.io/en/latest/blog/2024/07/01/BIDS%20Town%20Hall%202024%3A%20summary.html). +BIDS continues to be featured in different venues. Our very own maintainer extraordinaire, Rémi Gau, was recently featured in a yet-to-be-released podcast. The BIDS Town Hall was featured at OHBM again this year in June. For a full recount refer to [this blog post](./town-hall-2024-debrief.md). ## BIDS Extension Proposals (BEPs) diff --git a/docs/getting_started/resources/talks.md b/docs/getting_started/resources/talks.md index fc617a11..a3840332 100644 --- a/docs/getting_started/resources/talks.md +++ b/docs/getting_started/resources/talks.md @@ -20,20 +20,20 @@ Two great resources for curated lists of talks and slides are: ## Other Slideshows and talk -| Title | Speaker | Year | Occasion | Location | Video | Slides | -| -------------------------------------------------------------------------------- | ----------------------------------- | ---- | ----------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------ | -------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------- | -| BIDS: underlying data management principles | Remi Gau | 2022 | [Open Research at the Wellcome Centre for Integrative Neuroimaging (WIN)](https://open.win.ox.ac.uk/pages/open-science/community/Open-WIN-Community/) | Online | [link](https://vimeo.com/showcase/7645853/video/668642973) | [link](https://osf.io/h6gsr/) | -| BIDS: a recipe for success | Patricia Clement | 2021 | [GlimR](https://glimr.eu/) BIDS workshop | | [link](https://www.youtube.com/watch?v=ukgiAP2Hn3E) | [link](https://osf.io/nu24a) | -| BIDS conversion | Remi Gau & Guiomar Niso | 2021 | ACCS & OHBM Webinar and Workshop Series | online | [link](https://www.youtube.com/watch?v=m7vEHGpqQIw) | [link](https://remi-gau.github.io/bids_cookbook/) | -| The BIDS Ecosystem | Chris Markiewicz | 2020 | Neuro Data Science School | Online | n/a | [link](https://effigies.github.io/bids-ecosystem/) | -| BIDS Applications and Derivatives | Chris Markiewicz | 2019 | BIDS Computational Models Workshop | Princeton USA | n/a | [link](https://effigies.github.io/bids-derivatives/) | -| BIDS Apps Metadata | Chris Markiewicz | 2019 | Making Open Neuroscience Infrastructure Interoperable (MONII 2.0) | Montreal, Canada | n/a | [link](https://effigies.github.io/bids-metadata/) | -| BIDS - Open Science Working Group | A Shephard | 2018 | n/a | Aston University, Birmingham England | n/a | [link](https://github.com/bids-standard/bids-starter-kit/files/2068336/Brain.Imaging.Data.Structure.-.OSWG.pptx) | -| FAIR Data - BIDS datasets | Maryann Martone & Jeffrey Grethe | 2018 | OHBM | Singapore | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12542/video_presentations/115883#) | n/a | -| ReproIn: automatic, shareable, version-controlled BIDS datasets from MR scanners | Matteo Visconti di Oleggio Castello | 2018 | OHBM | Singapore | n/a | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12541/video_presentations/115999#) | -| OpenNeuro presentation | Krzysztof Gorgolewski | 2017 | OHBM | Vancouver, Canada | [link](https://www.pathlms.com/ohbm/courses/5158/sections/7806/video_presentations/76062#) | [link](https://www.slideshare.net/chrisfilo1/openneuro-a-free-online-platform-for-sharing-and-analysis-of-neuroimaging-data) | -| fMRIprep | Krzysztof Gorgolewski | 2017 | n/a | Stanford University, Stanford USA | n/a | [link](https://www.slideshare.net/chrisfilo1/fmriprep-robust-and-easy-to-use-fmri-preprocessing-pipeline) | -| BIDS | Krzysztof Gorgolewski | 2016 | OHBM | Geneva, Switzerland | n/a | [link](https://www.slideshare.net/chrisfilo1/the-brain-imaging-data-structure-ohbm-2016) | +| Title | Speaker | Year | Occasion | Location | Video | Slides | +| -------------------------------------------------------------------------------- | ----------------------------------- | ---- | ------------------------------------------------------------------------| ------------------------------------ | -------------------------------------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------------------------- | +| BIDS: underlying data management principles | Remi Gau | 2022 | Open Research at the Wellcome Centre for Integrative Neuroimaging (WIN) | Online | [link](https://vimeo.com/showcase/7645853/video/668642973) | [link](https://osf.io/h6gsr/) | +| BIDS: a recipe for success | Patricia Clement | 2021 | [GlimR](https://glimr.eu/) BIDS workshop | | [link](https://www.youtube.com/watch?v=ukgiAP2Hn3E) | [link](https://osf.io/nu24a) | +| BIDS conversion | Remi Gau & Guiomar Niso | 2021 | ACCS & OHBM Webinar and Workshop Series | online | [link](https://www.youtube.com/watch?v=m7vEHGpqQIw) | [link](https://remi-gau.github.io/bids_cookbook/) | +| The BIDS Ecosystem | Chris Markiewicz | 2020 | Neuro Data Science School | Online | n/a | [link](https://effigies.github.io/bids-ecosystem/) | +| BIDS Applications and Derivatives | Chris Markiewicz | 2019 | BIDS Computational Models Workshop | Princeton USA | n/a | [link](https://effigies.github.io/bids-derivatives/) | +| BIDS Apps Metadata | Chris Markiewicz | 2019 | Making Open Neuroscience Infrastructure Interoperable (MONII 2.0) | Montreal, Canada | n/a | [link](https://effigies.github.io/bids-metadata/) | +| BIDS - Open Science Working Group | A Shephard | 2018 | n/a | Aston University, Birmingham England | n/a | [link](https://github.com/bids-standard/bids-starter-kit/files/2068336/Brain.Imaging.Data.Structure.-.OSWG.pptx) | +| FAIR Data - BIDS datasets | Maryann Martone & Jeffrey Grethe | 2018 | OHBM | Singapore | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12542/video_presentations/115883#) | n/a | +| ReproIn: automatic, shareable, version-controlled BIDS datasets from MR scanners | Matteo Visconti di Oleggio Castello | 2018 | OHBM | Singapore | n/a | [link](https://www.pathlms.com/ohbm/courses/8246/sections/12541/video_presentations/115999#) | +| OpenNeuro presentation | Krzysztof Gorgolewski | 2017 | OHBM | Vancouver, Canada | [link](https://www.pathlms.com/ohbm/courses/5158/sections/7806/video_presentations/76062#) | [link](https://www.slideshare.net/chrisfilo1/openneuro-a-free-online-platform-for-sharing-and-analysis-of-neuroimaging-data) | +| fMRIprep | Krzysztof Gorgolewski | 2017 | n/a | Stanford University, Stanford USA | n/a | [link](https://www.slideshare.net/chrisfilo1/fmriprep-robust-and-easy-to-use-fmri-preprocessing-pipeline) | +| BIDS | Krzysztof Gorgolewski | 2016 | OHBM | Geneva, Switzerland | n/a | [link](https://www.slideshare.net/chrisfilo1/the-brain-imaging-data-structure-ohbm-2016) | diff --git a/docs/getting_started/tutorials/annotation.md b/docs/getting_started/tutorials/annotation.md index 57b90a40..720a9bc0 100644 --- a/docs/getting_started/tutorials/annotation.md +++ b/docs/getting_started/tutorials/annotation.md @@ -26,13 +26,13 @@ Annotations in BIDS can be done at several levels, including the dataset, subjec funding, and citation information. This file does not provide any actual description of the data. -> You can fill in this blank [dataset description template](https://raw.githubusercontent.com/bids-standard/bids-starter-kit/main/templates/dataset_description.json) or use it as a guide. +> You can fill in this blank [dataset description template](../templates/index.md#dataset_descriptionjson) or use it as a guide. ### Dataset description (`README`) `README` file is a top-level text file that gives the actual overview of the dataset. A comprehensive `README` is essential for users of your data. -> You can edit the [README template](https://raw.githubusercontent.com/bids-standard/bids-starter-kit/main/templates/README.MD) with the vital information needed for others to analyze your dataset. +> You can edit the [README template](../templates/index.md#readmemd) with the vital information needed for others to analyze your dataset. ## Subject annotations Annotations at the subject level can be done in the `participants.tsv` file, diff --git a/md_link_check_config.json b/md_link_check_config.json index 187cf690..c41ec222 100644 --- a/md_link_check_config.json +++ b/md_link_check_config.json @@ -14,8 +14,10 @@ }, { "pattern": "^https://www.instagram.com/bidsstandard.*" + }, + { + "pattern": "^https://direct.mit.edu/imag/pages/editorial-info" } - ], "timeout": "20s", "retryOn429": true