diff --git a/docs/blog/posts/meet-the-bids-steering-group.md b/docs/blog/posts/meet-the-bids-steering-group.md index 68da306b..ae753f35 100644 --- a/docs/blog/posts/meet-the-bids-steering-group.md +++ b/docs/blog/posts/meet-the-bids-steering-group.md @@ -126,7 +126,7 @@ Furthermore, I hope that we can extend BIDS with more raw data types, like eye-t I am a professor of psychology at Stanford. My main basic research interests are focused on the brain systems involved in decision making and executive function, primarily using fMRI. -In the last decade I've become increasingly interested in meta-scientific topics focused on reproducibility and transparency, including involvement in a number of data sharing initiatives including [OpenNeuro](https://openneuro.org/), [NeuroVault](https://neurovault.org/), and [NeuroSynth](https://neurosynth.org/). +In the last decade I've become increasingly interested in meta-scientific topics focused on reproducibility and transparency, including involvement in a number of data sharing initiatives including [OpenNeuro][openneuro], [NeuroVault](https://neurovault.org/), and [NeuroSynth](https://neurosynth.org/). #### How did you get involved in BIDS? diff --git a/docs/collaboration/governance.md b/docs/collaboration/governance.md index e2c91fad..c2c26259 100644 --- a/docs/collaboration/governance.md +++ b/docs/collaboration/governance.md @@ -62,7 +62,7 @@ Python and [bids-matlab](https://github.com/bids-standard/bids-matlab) libraries allow querying and manipulating BIDS-compliant datasets, [BIDS-Apps](https://bids-website.readthedocs.io/en/latest/tools/bids-apps.html) for running portable pipelines on validated BIDS datasets, and platforms like -[OpenNeuro](https://openneuro.org/) store and serve BIDS datasets. Note +[OpenNeuro][openneuro] store and serve BIDS datasets. Note that the associated software does not fall under the same governance structure as BIDS, although the contributor and user base may largely overlap. diff --git a/docs/datasets/index.md b/docs/datasets/index.md index cd16473e..42b3aa54 100644 --- a/docs/datasets/index.md +++ b/docs/datasets/index.md @@ -9,7 +9,7 @@ Many public repositories for neuroimaging data are accepting (and in some cases data submitted in BIDS format. Below is a small sample of some main resources for finding BIDS datasets that may be used in your analyses. -[OpenNeuro](https://openneuro.org/): +[OpenNeuro][openneuro]: If you're looking for full data files to run the validator on or simply compare to your own _bidsified_ data try searching here. Datasets here are (by and large) publicly available and conform to BIDS. diff --git a/docs/faq/general.md b/docs/faq/general.md index 52582134..a162e013 100644 --- a/docs/faq/general.md +++ b/docs/faq/general.md @@ -180,5 +180,5 @@ If you want to know more about what license to choose for your dataset, see the [turing way](https://the-turing-way.netlify.app/reproducible-research/licensing/licensing-data.html#data-licenses) page dedicated to this topic. -If you plan to put your dataset on [openneuro](https://openneuro.org/), +If you plan to put your dataset on [openneuro][openneuro], you should use a CC0 or a PDDL license as explained in their [FAQ](https://openneuro.org/faq). diff --git a/docs/impact/measuring.md b/docs/impact/measuring.md index 52b34539..30e4f798 100644 --- a/docs/impact/measuring.md +++ b/docs/impact/measuring.md @@ -6,7 +6,7 @@ Over the years, the number of shared datasets available to the public has greatly increased. At its heart, adoption of the BIDS standard across datasets aids in the sharing of data and collaboration of research through the standardization of descriptive files names and the organization of data. BIDS organized datasets are -available through public repositories such as [Openneuro.org](https://openneuro.org/) +available through public repositories such as [Openneuro.org][openneuro] and the number of publicly available BIDS datasets continues to grow every year. the [BIDS validator](https://github.com/bids-standard/bids-validator) to automatically check datasets for adherence to the specification, [BIDS Apps](https://doi.org/10.1371/journal.pcbi.1005209), a collection of portable neuroimaging pipelines that understand BIDS datasets, -and [OpenNeuro](https://openneuro.org/) as a database for BIDS formatted datasets. +and [OpenNeuro][openneuro] as a database for BIDS formatted datasets. A non-exhaustive list of further tools can be found in the [tools](./tools/index.md) section.