diff --git a/src/03-modality-agnostic-files.md b/src/03-modality-agnostic-files.md index c7bac03654..31efc67c0d 100644 --- a/src/03-modality-agnostic-files.md +++ b/src/03-modality-agnostic-files.md @@ -179,40 +179,21 @@ For backwards compatibility, if `species` is absent, the participant is assumed `homo sapiens`. Commonly used *optional* columns in `participants.tsv` files are `age`, `sex`, -`handedness`, `strain` and `strain_rrid`. We RECOMMEND to make use +`handedness`, `strain`, and `strain_rrid`. We RECOMMEND to make use of these columns, and in case that you do use them, we RECOMMEND to use the following values for them: -- `age`: numeric value in years (float or integer value) - -- `sex`: string value indicating phenotypical sex, one of "male", "female", - "other" - - - for "male", use one of these values: `male`, `m`, `M`, `MALE`, `Male` - - - for "female", use one of these values: `female`, `f`, `F`, `FEMALE`, - `Female` - - - for "other", use one of these values: `other`, `o`, `O`, `OTHER`, - `Other` - -- `handedness`: string value indicating one of "left", "right", - "ambidextrous" - - - for "left", use one of these values: `left`, `l`, `L`, `LEFT`, `Left` - - - for "right", use one of these values: `right`, `r`, `R`, `RIGHT`, - `Right` - - - for "ambidextrous", use one of these values: `ambidextrous`, `a`, `A`, - `AMBIDEXTROUS`, `Ambidextrous` - -- `strain`: for species different from `homo sapiens`, string value indicating - the strain of the species, for example: `C57BL/6J`. - -- `strain_rrid`: for species different from `homo sapiens`, research resource identifier - ([RRID](https://scicrunch.org/resources/Organisms/search)) of the strain of the species, - for example: `RRID:IMSR_JAX:000664`. +{{ MACROS___make_columns_table( + { + "participant_id": ("REQUIRED", "There MUST be exactly one row for each participant."), + "species": "RECOMMENDED", + "age": "RECOMMENDED", + "sex": "RECOMMENDED", + "handedness": "RECOMMENDED", + "strain": "RECOMMENDED", + "strain_rrid": "RECOMMENDED", + } +) }} Throughout BIDS you can indicate missing values with `n/a` (for "not available"). @@ -279,32 +260,17 @@ samples.json The purpose of this file is to describe properties of samples, indicated by the `sample` entity. This file is REQUIRED if `sample-