diff --git a/src/appendices/file-collections.md b/src/appendices/file-collections.md index 4228e5cebe..07e5b5fdf6 100644 --- a/src/appendices/file-collections.md +++ b/src/appendices/file-collections.md @@ -25,7 +25,7 @@ included in this appendix: @@ -60,7 +60,7 @@ and a guide for using macros can be found at diff --git a/src/appendices/qmri.md b/src/appendices/qmri.md index 6e80dc4f4d..2e0bb7ef8b 100644 --- a/src/appendices/qmri.md +++ b/src/appendices/qmri.md @@ -196,7 +196,7 @@ Explanation of the table: diff --git a/src/modality-specific-files/behavioral-experiments.md b/src/modality-specific-files/behavioral-experiments.md index 532db66e17..181edf9dcc 100644 --- a/src/modality-specific-files/behavioral-experiments.md +++ b/src/modality-specific-files/behavioral-experiments.md @@ -3,7 +3,7 @@ diff --git a/src/modality-specific-files/electroencephalography.md b/src/modality-specific-files/electroencephalography.md index bf859c1c8b..f2ede709b3 100644 --- a/src/modality-specific-files/electroencephalography.md +++ b/src/modality-specific-files/electroencephalography.md @@ -15,7 +15,7 @@ and can be used for practical guidance when curating a new dataset. @@ -184,7 +184,7 @@ Date time information MUST be expressed as indicated in [Units](../common-princi @@ -263,7 +263,7 @@ UADC001 MISC n/a envelope of audio signal n/a good n/a @@ -310,7 +310,7 @@ the recording. @@ -428,7 +428,7 @@ Photos of the anatomical landmarks and/or fiducials. diff --git a/src/modality-specific-files/intracranial-electroencephalography.md b/src/modality-specific-files/intracranial-electroencephalography.md index 245965eb8e..41a05aea15 100644 --- a/src/modality-specific-files/intracranial-electroencephalography.md +++ b/src/modality-specific-files/intracranial-electroencephalography.md @@ -15,7 +15,7 @@ and can be used for practical guidance when curating a new dataset. @@ -204,7 +204,7 @@ Date time information MUST be expressed as indicated in [Units](../common-princi @@ -281,7 +281,7 @@ TR1 TRIG n/a n/a n/a good n/a @@ -355,7 +355,7 @@ H01 27 -42 -21 5 AdTech @@ -435,7 +435,7 @@ data. diff --git a/src/modality-specific-files/magnetic-resonance-imaging-data.md b/src/modality-specific-files/magnetic-resonance-imaging-data.md index b323822e97..41cacd7e8f 100644 --- a/src/modality-specific-files/magnetic-resonance-imaging-data.md +++ b/src/modality-specific-files/magnetic-resonance-imaging-data.md @@ -168,7 +168,7 @@ whenever possible. See also @@ -179,7 +179,7 @@ Currently supported non-parametric structural MR images include: @@ -284,7 +284,7 @@ constitute parametric maps. Currently supported parametric maps include: @@ -336,7 +336,7 @@ datasets (created after version 1.5.0.): @@ -356,7 +356,7 @@ Currently supported image contrasts include: @@ -372,7 +372,7 @@ and a guide for using macros can be found at @@ -565,7 +565,7 @@ Currently supported image types include: @@ -580,7 +580,7 @@ and a guide for using macros can be found at @@ -790,7 +790,7 @@ and can be used for practical guidance when curating a new dataset. @@ -947,7 +947,7 @@ using the following image types: @@ -1022,7 +1022,7 @@ containing that type of fieldmap can be found here: @@ -1068,7 +1068,7 @@ second echos are available. @@ -1104,7 +1104,7 @@ In some cases (for example GE), the scanner software will directly reconstruct a @@ -1153,7 +1153,7 @@ AFNI `3dqwarp`. diff --git a/src/modality-specific-files/magnetoencephalography.md b/src/modality-specific-files/magnetoencephalography.md index d8b3cd10aa..9548f84ee3 100644 --- a/src/modality-specific-files/magnetoencephalography.md +++ b/src/modality-specific-files/magnetoencephalography.md @@ -19,7 +19,7 @@ the [BIDS examples repository](https://github.com/bids-standard/bids-examples). @@ -204,7 +204,7 @@ Date time information MUST be expressed as indicated in [Units](../common-princi @@ -286,7 +286,7 @@ UADC001 AUDIO V envelope of audio signal presented to participant @@ -399,7 +399,7 @@ Photos of the anatomical landmarks and/or head localization coils @@ -428,7 +428,7 @@ actual anatomical nasion: `sub-0001_ses-001_acq-NAS_photo.jpg` diff --git a/src/modality-specific-files/microscopy.md b/src/modality-specific-files/microscopy.md index de5bf08096..80804c884c 100644 --- a/src/modality-specific-files/microscopy.md +++ b/src/modality-specific-files/microscopy.md @@ -21,7 +21,7 @@ Further Microscopy datasets are available: @@ -66,7 +66,7 @@ Microscopy data currently support the following imaging modalities: @@ -434,7 +434,7 @@ in a sample. diff --git a/src/modality-specific-files/positron-emission-tomography.md b/src/modality-specific-files/positron-emission-tomography.md index 2e704b6cb1..d26ba71df6 100644 --- a/src/modality-specific-files/positron-emission-tomography.md +++ b/src/modality-specific-files/positron-emission-tomography.md @@ -63,7 +63,7 @@ In this example, tracer injection coincides with scan start. @@ -297,7 +297,7 @@ ses-02 59 diff --git a/src/schema/objects/datatypes.yaml b/src/schema/objects/datatypes.yaml index af82185bf0..bbb1197a7b 100644 --- a/src/schema/objects/datatypes.yaml +++ b/src/schema/objects/datatypes.yaml @@ -1,6 +1,6 @@ --- # This file defines valid BIDS datatypes, along with their full names and descriptions. -# For rules regarding how suffixes relate to datatypes, see files in `rules/datatypes/`. +# For rules regarding how suffixes relate to datatypes, see files in `rules/files/raw/`. anat: value: anat display_name: Anatomical Magnetic Resonance Imaging diff --git a/src/schema/objects/suffixes.yaml b/src/schema/objects/suffixes.yaml index 9e5a41b966..fa40af5778 100644 --- a/src/schema/objects/suffixes.yaml +++ b/src/schema/objects/suffixes.yaml @@ -1,6 +1,6 @@ --- # This file defines valid BIDS file suffixes. -# For rules regarding how suffixes relate to datatypes, see files in `rules/datatypes/`. +# For rules regarding how suffixes relate to datatypes, see files in `rules/files/raw/`. TwoPE: value: 2PE display_name: 2-photon excitation microscopy