From cf157f6731e9698f50340ed7840f89831731b504 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Tue, 8 Aug 2023 09:15:54 +0200 Subject: [PATCH 01/81] [pre-commit.ci] pre-commit autoupdate (#1577) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/mirrors-prettier: v3.0.0 β†’ v3.0.1](https://github.com/pre-commit/mirrors-prettier/compare/v3.0.0...v3.0.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index a2ef4cf862..c601adf20c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -38,7 +38,7 @@ repos: - id: flake8 args: [--config=tools/schemacode/setup.cfg] - repo: https://github.com/pre-commit/mirrors-prettier - rev: v3.0.0 + rev: v3.0.1 hooks: - id: prettier files: src/schema/.*/.*\.yaml From b49cf5855ff4816f1fc646bf0e1ac65de8cc100d Mon Sep 17 00:00:00 2001 From: melanieganz Date: Thu, 10 Aug 2023 10:48:41 +0200 Subject: [PATCH 02/81] Update entities.yaml Removed the atlas entity and added a seg (segmentation) entity instead. --- src/schema/objects/entities.yaml | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/src/schema/objects/entities.yaml b/src/schema/objects/entities.yaml index 3260b4a3d4..b2ea4647df 100644 --- a/src/schema/objects/entities.yaml +++ b/src/schema/objects/entities.yaml @@ -25,16 +25,6 @@ acquisition: remains at the discretion of the researcher. type: string format: label -atlas: - name: atlas - display_name: Atlas - description: | - The `atlas-