diff --git a/src/modality-specific-files/electroencephalography.md b/src/modality-specific-files/electroencephalography.md index 8a584bb7a0..782012f3ea 100644 --- a/src/modality-specific-files/electroencephalography.md +++ b/src/modality-specific-files/electroencephalography.md @@ -390,7 +390,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("eeg.EEGCoordsystemGeneral") }} +{{ MACROS___make_json_table("json.eeg.EEGCoordsystemGeneral") }} Fields relating to the EEG electrode positions: @@ -402,7 +402,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("eeg.EEGCoordsystemPositions") }} +{{ MACROS___make_json_table("json.eeg.EEGCoordsystemPositions") }} Fields relating to the position of fiducials measured during an EEG session/run: @@ -414,7 +414,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("eeg.EEGCoordsystemFiducials") }} +{{ MACROS___make_json_table("json.eeg.EEGCoordsystemFiducials") }} Fields relating to the position of anatomical landmark measured during an EEG session/run: @@ -426,7 +426,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table(["eeg.EEGCoordsystemLandmark", "eeg.EEGCoordsystemLandmarkDescriptionRec"]) }} +{{ MACROS___make_json_table(["json.eeg.EEGCoordsystemLandmark", "json.eeg.EEGCoordsystemLandmarkDescriptionRec"]) }} If the position of anatomical landmarks is measured using the same system or device used to measure electrode positions, and if thereby the anatomical diff --git a/src/modality-specific-files/intracranial-electroencephalography.md b/src/modality-specific-files/intracranial-electroencephalography.md index 096b96f97d..dc15d9f92d 100644 --- a/src/modality-specific-files/intracranial-electroencephalography.md +++ b/src/modality-specific-files/intracranial-electroencephalography.md @@ -389,7 +389,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("ieeg.iEEGCoordsystemGeneral") }} +{{ MACROS___make_json_table("json.ieeg.iEEGCoordsystemGeneral") }} Fields relating to the iEEG electrode positions: @@ -401,7 +401,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("ieeg.iEEGCoordsystemPositions") }} +{{ MACROS___make_json_table("json.ieeg.iEEGCoordsystemPositions") }} ### Recommended 3D coordinate systems diff --git a/src/modality-specific-files/magnetoencephalography.md b/src/modality-specific-files/magnetoencephalography.md index c3896a908e..babc92be7c 100644 --- a/src/modality-specific-files/magnetoencephalography.md +++ b/src/modality-specific-files/magnetoencephalography.md @@ -343,7 +343,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("meg.MEGCoordsystemWithEEG") }} +{{ MACROS___make_json_table("json.meg.MEGCoordsystemWithEEG") }} Head localization coils: @@ -355,7 +355,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("meg.MEGCoordsystemHeadLocalizationCoils") }} +{{ MACROS___make_json_table("json.meg.MEGCoordsystemHeadLocalizationCoils") }} Digitized head points: @@ -367,7 +367,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("meg.MEGCoordsystemDigitizedHeadPoints") }} +{{ MACROS___make_json_table("json.meg.MEGCoordsystemDigitizedHeadPoints") }} Anatomical MRI: @@ -379,7 +379,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("meg.MEGCoordsystemAnatomicalMRI") }} +{{ MACROS___make_json_table("json.meg.MEGCoordsystemAnatomicalMRI") }} Anatomical landmarks: @@ -391,7 +391,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("meg.MEGCoordsystemAnatomicalLandmarks") }} +{{ MACROS___make_json_table("json.meg.MEGCoordsystemAnatomicalLandmarks") }} It is also RECOMMENDED that the MRI voxel coordinates of the actual anatomical landmarks for co-registration of MEG with structural MRI are stored in the @@ -419,7 +419,7 @@ The definitions of the fields specified in these tables may be found in A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("meg.MEGCoordsystemFiducialsInformation") }} +{{ MACROS___make_json_table("json.meg.MEGCoordsystemFiducialsInformation") }} For more information on the definition of anatomical landmarks, please visit: [How are the Left and Right Pre-Auricular (LPA and RPA) points defined? - FieldTrip Toolbox](https://www.fieldtriptoolbox.org/faq/how_are_the_lpa_and_rpa_points_defined/) diff --git a/src/modality-specific-files/near-infrared-spectroscopy.md b/src/modality-specific-files/near-infrared-spectroscopy.md index 7382560a43..c68cfcf5db 100644 --- a/src/modality-specific-files/near-infrared-spectroscopy.md +++ b/src/modality-specific-files/near-infrared-spectroscopy.md @@ -386,7 +386,7 @@ A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table("nirs.CoordsystemGeneral") }} +{{ MACROS___make_json_table("json.nirs.CoordsystemGeneral") }} Fields relating to the NIRS optode positions: @@ -399,7 +399,7 @@ A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table(["nirs.CoordinateSystem", "nirs.CoordinateSystemDescriptionRec"]) }} +{{ MACROS___make_json_table(["json.nirs.CoordinateSystem", "json.nirs.CoordinateSystemDescriptionRec"]) }} Fields relating to the position of fiducials measured during an NIRS session/run: @@ -412,7 +412,7 @@ A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table(["nirs.Fiducials", "nirs.FiducialsCoordinateSystemDescriptionRec"]) }} +{{ MACROS___make_json_table(["json.nirs.Fiducials", "json.nirs.FiducialsCoordinateSystemDescriptionRec"]) }} Fields relating to the position of anatomical landmarks measured during an NIRS session/run: @@ -425,7 +425,7 @@ A guide for using macros can be found at https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md --> -{{ MACROS___make_sidecar_table(["nirs.AnatomicalLandmark", "nirs.AnatomicalLandmarkCoordinateSystemDescriptionRec"]) }} +{{ MACROS___make_json_table(["json.nirs.AnatomicalLandmark", "nirs.AnatomicalLandmarkCoordinateSystemDescriptionRec"]) }} ### Example `*_coordsystem.json`