From 9d7c1eda618bf4b7978e23a05a6a44c6e59b8e95 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Thu, 13 Jun 2024 18:55:22 -0400 Subject: [PATCH] [FIX] Update links to moved RRID site (#1857) sed -i'' -e 's#https://scicrunch.org/resources#https://rrid.site#' src/**/*.{md,yaml} --- src/introduction.md | 2 +- src/modality-specific-files/microscopy.md | 2 +- src/schema/objects/columns.yaml | 2 +- src/schema/objects/formats.yaml | 2 +- src/schema/objects/metadata.yaml | 10 +++++----- 5 files changed, 9 insertions(+), 9 deletions(-) diff --git a/src/introduction.md b/src/introduction.md index e56f6ddef7..4315720e3a 100644 --- a/src/introduction.md +++ b/src/introduction.md @@ -190,4 +190,4 @@ BIDS has also a [Research Resource Identifier (RRID)](https://force11.org/group/resource-identification-initiative), which you can also include in your citations in addition to relevant publications (see above): -- [`RRID:SCR_016124`](https://scicrunch.org/resources/data/record/nlx_144509-1/SCR_016124/resolver?q=SCR_016124) +- [`RRID:SCR_016124`](https://rrid.site/data/record/nlx_144509-1/SCR_016124/resolver?q=SCR_016124) diff --git a/src/modality-specific-files/microscopy.md b/src/modality-specific-files/microscopy.md index 1b813f9eb2..998e463886 100644 --- a/src/modality-specific-files/microscopy.md +++ b/src/modality-specific-files/microscopy.md @@ -434,7 +434,7 @@ sub-02 mus musculus C57BL/6J RRID:IMSR_JAX:000664 "Description": "name of the strain of the species" }, "strain_rrid": { - "Description": "research resource identifier (RRID) of the strain (https://scicrunch.org/resources/data/source/nlx_154697-1/search)" + "Description": "research resource identifier (RRID) of the strain (https://rrid.site/data/source/nlx_154697-1/search)" } } ``` diff --git a/src/schema/objects/columns.yaml b/src/schema/objects/columns.yaml index 5ca387a007..9128a235ba 100644 --- a/src/schema/objects/columns.yaml +++ b/src/schema/objects/columns.yaml @@ -615,7 +615,7 @@ strain_rrid: display_name: Strain RRID description: | For species different from `homo sapiens`, research resource identifier - ([RRID](https://scicrunch.org/resources/data/source/nlx_154697-1/search)) + ([RRID](https://rrid.site/data/source/nlx_154697-1/search)) of the strain of the species, for example: `RRID:IMSR_JAX:000664`. type: string format: rrid diff --git a/src/schema/objects/formats.yaml b/src/schema/objects/formats.yaml index 804dfda885..7de4345b2d 100644 --- a/src/schema/objects/formats.yaml +++ b/src/schema/objects/formats.yaml @@ -95,7 +95,7 @@ participant_relative: rrid: display_name: Research resource identifier description: | - A [research resource identifier](https://scicrunch.org/resources). + A [research resource identifier](https://rrid.site). pattern: 'RRID:.+_.+' stimuli_relative: display_name: Path relative to the stimuli directory diff --git a/src/schema/objects/metadata.yaml b/src/schema/objects/metadata.yaml index 1b13a6a614..051a990470 100644 --- a/src/schema/objects/metadata.yaml +++ b/src/schema/objects/metadata.yaml @@ -2850,9 +2850,9 @@ SamplePrimaryAntibody: display_name: Sample Primary Antibody description: | Description(s) of the primary antibody used for immunostaining. - Either an [RRID](https://scicrunch.org/resources) or the name, supplier and catalog + Either an [RRID](https://rrid.site) or the name, supplier and catalog number of a commercial antibody. - For non-commercial antibodies either an [RRID](https://scicrunch.org/resources) or the + For non-commercial antibodies either an [RRID](https://rrid.site) or the host-animal and immunogen used (for examples: `"RRID:AB_2122563"` or `"Rabbit anti-Human HTR5A Polyclonal Antibody, Invitrogen, Catalog # PA1-2453"`). MAY be an array of strings if different antibodies are used in each channel of the file. @@ -2866,9 +2866,9 @@ SampleSecondaryAntibody: display_name: Sample Secondary Antibody description: | Description(s) of the secondary antibody used for immunostaining. - Either an [RRID](https://scicrunch.org/resources) or the name, supplier and catalog + Either an [RRID](https://rrid.site) or the name, supplier and catalog number of a commercial antibody. - For non-commercial antibodies either an [RRID](https://scicrunch.org/resources) or the + For non-commercial antibodies either an [RRID](https://rrid.site) or the host-animal and immunogen used (for examples: `"RRID:AB_228322"` or `"Goat anti-Mouse IgM Secondary Antibody, Invitrogen, Catalog # 31172"`). MAY be an array of strings if different antibodies are used in each channel of the file. @@ -3148,7 +3148,7 @@ SoftwareRRID: name: SoftwareRRID display_name: SoftwareRRID description: | - [Research Resource Identifier](https://scicrunch.org/resources) of the + [Research Resource Identifier](https://rrid.site) of the software that was used to present the stimuli. Examples: The RRID for Psychtoolbox is 'SCR_002881', and that of PsychoPy is 'SCR_006571'.