diff --git a/bids_prov/afni/afni_parser.py b/bids_prov/afni/afni_parser.py
index 6e1415216..0980f05e1 100644
--- a/bids_prov/afni/afni_parser.py
+++ b/bids_prov/afni/afni_parser.py
@@ -219,6 +219,9 @@ def build_records(commands_bloc: list, agent_id: str, verbose: bool = False):
             else:
                 activity["Used"].append(existing_input["@id"])
 
+        # Order does not matter and then makes sense to include only unique values
+        activity["Used"] = sorted(set(activity["Used"]))
+
         for output_path in outputs:
             records["Entities"].append(
                 {
diff --git a/bids_prov/fsl/fsl_parser.py b/bids_prov/fsl/fsl_parser.py
index d9ddaa454..0da509751 100644
--- a/bids_prov/fsl/fsl_parser.py
+++ b/bids_prov/fsl/fsl_parser.py
@@ -502,6 +502,9 @@ def build_records(groups: Mapping[str, List[str]], agent_id: str):
                 else:
                     a["Used"].append(existing_input["@id"])
 
+            # Order does not matter and then makes sense to include only unique values
+            a["Used"] = sorted(set(a["Used"]))
+
             for output_path in outputs:
                 # output_name = output_path.replace("/", "_") # TODO
                 records["Entities"].append(
diff --git a/bids_prov/spm/spm_parser.py b/bids_prov/spm/spm_parser.py
index d6580f493..7306192cb 100644
--- a/bids_prov/spm/spm_parser.py
+++ b/bids_prov/spm/spm_parser.py
@@ -381,6 +381,9 @@ def get_records(task_groups: dict, agent_id: str, verbose=False) -> dict:
                 param_value = right_ if not right_.startswith("[") else right_.replace(" ", ", ")
                 params[param_name] = param_value  # example : [4 2] becomes [4, 2]
 
+        # Order does not matter and then makes sense to include only unique values
+        activity["Used"] = sorted(set(activity["Used"]))
+
         if params:
             activity["Parameters"] = params
 
diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc.jsonld b/examples/from_parsers/afni/afni_alt_onesided_proc.jsonld
index e86cd6e41..6dd965aca 100644
--- a/examples/from_parsers/afni/afni_alt_onesided_proc.jsonld
+++ b/examples/from_parsers/afni/afni_alt_onesided_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "@id": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:3f372617-f0ba-4f3a-86f0-ce2ea6ec39c1",
+        "@id": "urn:b3ac12f5-d164-4144-89f6-67daadcf23ac",
         "Label": "Make directory",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:732242fd-a890-4e32-9297-9bfcbbeb508f",
+        "@id": "urn:9eca7ae7-6ffe-446a-8603-7137fd4e4ee9",
         "Label": "Make directory",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:e8af30f7-c70b-43bf-a4d0-b50f658c6762",
+        "@id": "urn:df0f3c2c-5569-4f68-b81d-0a334275b3d2",
         "Label": "cp",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "cp ./afni_one_sided_t_test/tone_counting_onset_times.txt ./afni_one_sided_t_test/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:deeda8b2-3927-47d6-8375-d0341e4f6f2a",
-          "urn:cecf4f4e-5ba8-4780-90ce-f798e6c648e7"
+          "urn:680f5096-e37f-4ec7-b010-2dae5b5a44fd",
+          "urn:8596c632-de2b-47b7-b261-0bcc1b11efb4"
         ]
       },
       {
-        "@id": "urn:293a9acc-2652-48ff-842a-2f9da1b4ba07",
+        "@id": "urn:d17f25f0-c1e6-432f-9d55-370e965b4514",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:467c0714-a9fb-4797-aa59-c1698d242349"
+          "urn:16bf4939-3694-4686-af30-f2acf3976d7b"
         ]
       },
       {
-        "@id": "urn:071d1481-5649-48e9-9846-6a921f7ea79c",
+        "@id": "urn:137dfd65-b714-4d68-91d7-4b5c61d6653e",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:daa4ed3c-3454-4ae4-8628-7225154d1eb0"
+          "urn:12d262d4-d471-4599-a49d-b4cc3e0afab2"
         ]
       },
       {
-        "@id": "urn:e57b37e7-704b-4d09-af2e-ab42fd8cfe33",
+        "@id": "urn:426ecd4c-c844-4216-95ee-fdea203c4ac7",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:a40f9ca3-df62-492c-982a-3add9b872a76"
+          "urn:af357576-8640-45a8-b66f-ea5b863776aa"
         ]
       },
       {
-        "@id": "urn:5d3ffd11-a23c-4698-a32d-c48296ce3859",
+        "@id": "urn:4c94d596-d066-4fae-b4ac-31bd8a4eb431",
         "Label": "cat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:bf3ba33a-183c-44e2-9d66-a3582e62fe86"
+          "urn:35ff0a25-7087-4dde-92e3-84a2069160fa"
         ]
       },
       {
-        "@id": "urn:9fc62455-73dd-4732-8555-2a83319f69e3",
+        "@id": "urn:994296a3-49bb-4c51-a3b9-96095c772750",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:a40f9ca3-df62-492c-982a-3add9b872a76"
+          "urn:af357576-8640-45a8-b66f-ea5b863776aa"
         ]
       },
       {
-        "@id": "urn:4754665a-16eb-480f-bfcd-88b9d170d65a",
+        "@id": "urn:dbf6e423-b7f4-467c-99e7-f781accfb665",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:29663157-072a-468b-9e47-921f47d9e875",
-          "urn:afaaa713-1d26-4313-a970-3feebd8700eb"
+          "urn:66c6f4a5-e5db-46b2-b07c-e741461d17cd",
+          "urn:a6816927-efa4-41b8-9288-3137c8b366a0"
         ]
       },
       {
-        "@id": "urn:2b1a7ae1-af74-4c55-b949-3d417afdf260",
+        "@id": "urn:f76d19e5-b0b5-45bc-a574-b35b52c5604a",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:4f3d0144-7485-4165-a2fe-005b88ebf5e6",
-          "urn:6aedf88b-6fe2-45d4-b5b7-28bf7c208071"
+          "urn:47364376-8009-46b5-9c2c-50f39f9aa7b7",
+          "urn:656ab567-c679-4a66-9a7e-b12940a77924"
         ]
       },
       {
-        "@id": "urn:41a204e9-1848-4df7-93a1-c30b986f3042",
+        "@id": "urn:2b13402b-a51c-4043-8706-ad2728b1668d",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:73011544-3c7b-40fc-a4e2-4875797a05ab"
+          "urn:1bccfb06-3514-411e-bc4d-7d5021d773b8"
         ]
       },
       {
-        "@id": "urn:7d32a82f-24af-4bee-91b0-02ee1102c9f5",
+        "@id": "urn:70b358c7-8ce7-49a4-b5f1-2256b0311124",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:70ffec24-924a-4cd7-844c-044fb416aad9"
+          "urn:816045b3-2730-4afa-9cce-255578e9966f"
         ]
       },
       {
-        "@id": "urn:0552d4c0-6c50-45cc-bcbb-d0fff1a58c2e",
+        "@id": "urn:65e5b8ec-8793-4d1a-9626-73a770621fea",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:70ffec24-924a-4cd7-844c-044fb416aad9"
+          "urn:816045b3-2730-4afa-9cce-255578e9966f"
         ]
       },
       {
-        "@id": "urn:0af4a5a4-304f-4649-87b3-1dc04d628fed",
+        "@id": "urn:1584680b-a5c4-45be-94be-7b696c8e2397",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:73011544-3c7b-40fc-a4e2-4875797a05ab"
+          "urn:1bccfb06-3514-411e-bc4d-7d5021d773b8"
         ]
       },
       {
-        "@id": "urn:06728249-4ffc-4603-b140-7caa08e743c2",
+        "@id": "urn:e4dbc681-d344-4eb1-ac0c-12733bcdbb55",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:81b4feac-9606-47d8-8017-e256fb9fb699",
-          "urn:70ffec24-924a-4cd7-844c-044fb416aad9",
-          "urn:190b6895-634d-4cd9-9869-84a4418e0b03"
+          "urn:42d9c5ac-c680-4d9a-ad99-b824a3b0f394",
+          "urn:816045b3-2730-4afa-9cce-255578e9966f",
+          "urn:db266899-a1e3-4ced-ac54-5e9fc8e925ff"
         ]
       },
       {
-        "@id": "urn:4012b491-3ae3-4848-8074-bfa332f439e7",
+        "@id": "urn:9c79005b-4a9a-49e5-9b9e-e8bfd5752c8e",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:81b4feac-9606-47d8-8017-e256fb9fb699",
-          "urn:ae1ca939-9a9a-4d62-b535-cafd3fa44a68",
-          "urn:190b6895-634d-4cd9-9869-84a4418e0b03"
+          "urn:42d9c5ac-c680-4d9a-ad99-b824a3b0f394",
+          "urn:867c3f3e-61a4-4e15-868f-d6f881110e8b",
+          "urn:db266899-a1e3-4ced-ac54-5e9fc8e925ff"
         ]
       },
       {
-        "@id": "urn:bdc3428f-9888-480f-abf0-64468fa52057",
+        "@id": "urn:fe6d6a5a-eb3e-4181-805e-a2e2fe4fec50",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:2882c8ed-c1db-4ef4-8981-d39df13b5080"
+          "urn:3e1fcf67-d0c6-41ce-b2d4-494232f1d5fe"
         ]
       },
       {
-        "@id": "urn:3eafcf21-6255-4ba7-bd80-78455dd0f901",
+        "@id": "urn:da70a0c2-17ec-4c1c-9942-adf20b85a387",
         "Label": "cat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:8dbbbca1-8bc2-4b0e-a357-1e05f5c0fc1f"
+          "urn:b5cd528a-7c8f-4f15-ab9f-0bd7bca967ca"
         ]
       },
       {
-        "@id": "urn:0813e30b-9cdc-415d-b3cd-0645ea508097",
+        "@id": "urn:abf58822-094d-478e-8a84-f7519450b542",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:6deda758-ef02-498f-a4a6-535b3f4fb043"
+          "urn:209a7ec7-d866-4295-a415-a6b5798cc3de"
         ]
       },
       {
-        "@id": "urn:21411b96-1a6e-4640-8ea1-69e64343c162",
+        "@id": "urn:52844cb7-c62b-41ef-bc17-de747ef73c6c",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:edb1bdc5-b136-41ad-8df7-ac98335d54b7",
-          "urn:7caddf4f-423b-4db3-b628-cbac240104b3"
+          "urn:23e29248-772c-45f4-8176-869d5bb08030",
+          "urn:b7e9d248-a3aa-4de7-bd2a-0c2db25f4d01"
         ]
       },
       {
-        "@id": "urn:1b3ad86b-c8fb-4714-8d00-bafd6168d6ca",
+        "@id": "urn:4dd0b74d-0f56-46f4-a431-38c65782ceb7",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:81b4feac-9606-47d8-8017-e256fb9fb699"
+          "urn:db266899-a1e3-4ced-ac54-5e9fc8e925ff"
         ]
       },
       {
-        "@id": "urn:cefc4a69-2580-432a-9712-462d38e98ed3",
+        "@id": "urn:e8a448c0-04d3-4137-bc5d-41cee7d54402",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:7d32da7c-f063-4104-9d88-ae97dd8e5608"
+          "urn:43dca89a-d0f3-4707-b491-9bf44284d9a6"
         ]
       },
       {
-        "@id": "urn:d1ea45e7-a812-4de4-9c30-1ec9a59e9d41",
+        "@id": "urn:707144f1-53d3-42ec-ba6f-542f54333737",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:986f8c11-eedf-404b-bea2-fad45a7d6986",
-          "urn:b405b370-8eaa-48b0-92c3-fcbba8236113"
+          "urn:3949d23a-4ffc-49cf-90b3-b9af6d0ecad5",
+          "urn:f8fccd8c-a469-43b6-a102-7923558cdb83"
         ]
       },
       {
-        "@id": "urn:77e850b5-6812-461e-93f0-580c0bd99f98",
+        "@id": "urn:3d2b1791-0c11-4d49-a9c6-abd1f5374040",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:529e73e1-7848-46e1-b58f-24e6441cdb1e"
+          "urn:8b407455-a555-4fa6-bcda-746acc712cf2"
         ]
       },
       {
-        "@id": "urn:a443387d-ae1c-47b0-be9f-f85b0fd90438",
+        "@id": "urn:8552e2e6-e17e-4c59-a484-215e804f9bc9",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:118fb4ec-dde5-416b-aba9-4dad18c4c6ed",
+        "@id": "urn:c2144b4f-8b0f-4584-863a-cb9f06b98711",
         "Label": "3dresample",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:81b4feac-9606-47d8-8017-e256fb9fb699",
-          "urn:a5389e7d-d431-43bb-8d2c-c68cdfdd10fe"
+          "urn:3c0180cc-d6d3-4ccc-8f38-fe8174ca9257",
+          "urn:db266899-a1e3-4ced-ac54-5e9fc8e925ff"
         ]
       },
       {
-        "@id": "urn:0b7c6124-4e20-4583-ad3f-b7cacb34ed43",
+        "@id": "urn:9c267539-9f5e-4c6a-820b-652610506db1",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:e2e35562-610f-4238-bbea-f339229b4f33"
+          "urn:fe43eb18-b0fc-4dfc-9d79-e154b0bf1b40"
         ]
       },
       {
-        "@id": "urn:dd4cd79c-c8c5-4f25-b7fd-0fe1731c5694",
+        "@id": "urn:8d8b1a81-efd4-4ec8-9f8c-f8bd29768886",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:0519e719-8734-4119-b7e1-c2ae7ecb72ab",
-          "urn:457d391d-f8af-4766-94cd-9b534bda02f2"
+          "urn:1d0b4ab1-9c00-460b-a339-d7f4602a8644",
+          "urn:f96391da-8ad6-4968-90fc-e3e5e9d1f810"
         ]
       },
       {
-        "@id": "urn:97e65b94-ae5f-4f1f-8829-877b3f883ff4",
+        "@id": "urn:5b079aab-bbe2-4c2c-bf2a-b67914b572b1",
         "Label": "3ddot",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:0519e719-8734-4119-b7e1-c2ae7ecb72ab",
-          "urn:457d391d-f8af-4766-94cd-9b534bda02f2"
+          "urn:1d0b4ab1-9c00-460b-a339-d7f4602a8644",
+          "urn:f96391da-8ad6-4968-90fc-e3e5e9d1f810"
         ]
       },
       {
-        "@id": "urn:5bb8508a-eda5-4365-81fb-999ffd24853e",
+        "@id": "urn:f82eb87b-862d-408e-b96c-a142427057ff",
         "Label": "3dresample",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:1f98c4b0-daf2-4e68-9c91-1148e6a5e140",
-          "urn:a5389e7d-d431-43bb-8d2c-c68cdfdd10fe"
+          "urn:3c0180cc-d6d3-4ccc-8f38-fe8174ca9257",
+          "urn:4a586b50-9b84-4d1c-ae6a-04112b3056b3"
         ]
       },
       {
-        "@id": "urn:4830f327-2309-4954-8099-23d6077d7c00",
+        "@id": "urn:f5ff2181-2e0f-41da-93d1-7d37e905c7d1",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:c4c118f0-ce74-41f3-910b-79f9f4d747eb"
+          "urn:99a72a05-324e-47a9-a72f-17d952a1b355"
         ]
       },
       {
-        "@id": "urn:e61bbb8d-d5d3-4835-958e-c7de860c6474",
+        "@id": "urn:cbd8f7a7-e0a6-4c73-84e3-22dd6e13c348",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:529e73e1-7848-46e1-b58f-24e6441cdb1e"
+          "urn:8b407455-a555-4fa6-bcda-746acc712cf2"
         ]
       },
       {
-        "@id": "urn:99fdddd9-cb59-44fc-a275-ee3393b74160",
+        "@id": "urn:820e1ce0-2ab6-4f10-b95c-96faec0c975a",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:529e73e1-7848-46e1-b58f-24e6441cdb1e",
-          "urn:f8b35d61-6b39-4d1e-b9e8-e8a0f7c1bf73",
-          "urn:7caddf4f-423b-4db3-b628-cbac240104b3"
+          "urn:73dc9b49-8e2c-44bc-a868-f4864e9d45bd",
+          "urn:8b407455-a555-4fa6-bcda-746acc712cf2",
+          "urn:b7e9d248-a3aa-4de7-bd2a-0c2db25f4d01"
         ]
       },
       {
-        "@id": "urn:f95a770c-8509-4d92-9064-08ba635398ef",
+        "@id": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:7ceb1b7b-507f-432b-a8ee-af9cc600339d"
+          "urn:521a1422-bf72-4868-a196-36ea32e32333"
         ]
       },
       {
-        "@id": "urn:ca967613-3f22-4861-9331-8475dc0dffaa",
+        "@id": "urn:1fdbba0a-7cc5-4a61-a176-47060d3ec405",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:7ceb1b7b-507f-432b-a8ee-af9cc600339d"
+          "urn:521a1422-bf72-4868-a196-36ea32e32333"
         ]
       },
       {
-        "@id": "urn:9a9266f3-afad-4b3d-8fe4-000dacd8c70e",
+        "@id": "urn:b6f3d426-8b9e-4890-bdfe-fd4ff7add62d",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:7ceb1b7b-507f-432b-a8ee-af9cc600339d"
+          "urn:521a1422-bf72-4868-a196-36ea32e32333"
         ]
       },
       {
-        "@id": "urn:e63e06d1-3992-44fd-b5a6-fd0d6c86aeaf",
+        "@id": "urn:5f30236b-7177-4396-8dc1-f5273c7647d9",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:130b200a-a004-4ac6-917b-fae4be88252d"
+          "urn:7f7e32bd-8c96-4db8-a1c2-6dce6a2dd739"
         ]
       },
       {
-        "@id": "urn:33d94269-b0ee-4b88-b5fc-dd8b5f68ea2d",
+        "@id": "urn:22577639-ce6b-4c30-91e9-2c95f8eab904",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:b7d21574-2f03-409f-b7d5-363bb4297b36"
+          "urn:9e33b686-c0c9-443c-b09a-e260a466da80"
         ]
       },
       {
-        "@id": "urn:ae7558b3-c12b-4858-b7d2-b1fd79149b23",
+        "@id": "urn:ca3ac5a5-7b11-4707-8113-dddff04409ce",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:130b200a-a004-4ac6-917b-fae4be88252d"
+          "urn:7f7e32bd-8c96-4db8-a1c2-6dce6a2dd739"
         ]
       },
       {
-        "@id": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
+        "@id": "urn:036f2b82-0e8d-46c3-bc57-1f2f0456e364",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:d1e1cda7-db65-4013-a6e5-eff822140f17"
+          "urn:517a16eb-aa7f-4d32-8cd0-19db3ce2d355"
         ]
       },
       {
-        "@id": "urn:0e3d9bab-2776-4009-8c33-f64c88a586c0",
+        "@id": "urn:18bd9c7d-706e-46b0-9ef8-d845970d2f31",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:4e86443f-aeb9-467a-87cd-921d8561e79d"
+          "urn:a00d33e9-976c-4da2-bfd5-c323f5de4e6d"
         ]
       },
       {
-        "@id": "urn:bd40b1fe-f58d-4f57-abba-63275e76d0c1",
+        "@id": "urn:58eb8130-38d3-46cc-8a21-e4b5ff740ae4",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:ffbf1f1d-cc38-47b8-a1a2-c0242ca8e8f8",
-          "urn:c512daa6-81d5-4f4b-b599-ad2406137f3c",
-          "urn:a5389e7d-d431-43bb-8d2c-c68cdfdd10fe"
+          "urn:1050fa11-dffe-4880-bdee-9ad82afbd4dc",
+          "urn:3c0180cc-d6d3-4ccc-8f38-fe8174ca9257",
+          "urn:9a8c6a5d-e331-49ee-9cbf-7aae85f6c449"
         ]
       },
       {
-        "@id": "urn:9749c11a-671c-4c79-9951-10d84f2c77a6",
+        "@id": "urn:5174fcd8-825d-46ed-a9f2-6b364163d866",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:cff0d752-9ae5-4404-92c9-6fff79dcd286"
+          "urn:b0783160-cc25-4f90-87b0-62ea91dd364e"
         ]
       },
       {
-        "@id": "urn:a28a1432-8e3d-4d39-9cf9-e6acda7ca2fc",
+        "@id": "urn:6918cf06-5b73-4345-8163-3633a24242b4",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:1c42556b-6ea5-40c5-ba7f-d049ffbfac3c",
+        "@id": "urn:a4a72b44-266e-4cf8-843b-40c5956df505",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:deec3fb9-4e28-4d7c-8a47-599403e4edcd"
+          "urn:2eace7c1-48d7-42d0-8a53-9cd10b219f30"
         ]
       },
       {
-        "@id": "urn:331280a9-cad6-443e-8ec0-0bd032dec1f7",
+        "@id": "urn:5b26ef30-7cf9-4d67-9818-95e38cea6091",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:bd25383b-d975-4195-831d-bb521d441d8b",
-          "urn:859bef03-d16d-49d0-95d7-526e5a3b3e9d"
+          "urn:96b92e44-3256-4d88-85cd-4eed25cd88cd",
+          "urn:9f20d7ff-f5a0-46d0-8829-cf585dd6a6ba"
         ]
       },
       {
-        "@id": "urn:fd23797b-703e-44e6-9ce0-93a6c6659007",
+        "@id": "urn:1aa7103f-ebf2-4568-be03-f2d1e223af21",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:cf72bf6d-c398-4e69-9a8d-dbd8c530a31e"
+          "urn:9c84233e-4c3f-40e2-8828-b10d5fc0b1ef"
         ]
       },
       {
-        "@id": "urn:0f2a2124-3de2-4554-af3f-3833d2222dae",
+        "@id": "urn:1459fb22-3e8e-4f90-898a-d1defbf3be77",
         "Label": "1dcat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:8adb28e5-349d-4f53-8b18-4ed3975fae39"
+          "urn:d14b7740-d4ad-41e7-8204-c7cb9f0d331a"
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+        "@id": "urn:b390c087-192d-44fe-8042-1bcca38ab6ae",
         "Label": "1dcat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b"
+          "urn:c17bb85f-17c1-41eb-9367-0ee3a76060b5"
         ]
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-        "@id": "urn:f3a1b8eb-becf-4260-8526-cd7f14a93549",
+        "@id": "urn:71135527-0811-46d0-887d-1b56a42edc2e",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
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         "Parameters": {},
         "Used": [
-          "urn:94f1e1b4-8e76-41fb-9f3b-d60517272174"
+          "urn:1ebe5cf2-e3de-4260-b209-df16e3768d62"
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-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
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         "Parameters": {},
         "Used": [
-          "urn:94f1e1b4-8e76-41fb-9f3b-d60517272174"
+          "urn:1ebe5cf2-e3de-4260-b209-df16e3768d62"
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-        "@id": "urn:1f3ccb95-5c68-4eda-a0e2-23aef8d5c592",
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         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:a5389e7d-d431-43bb-8d2c-c68cdfdd10fe"
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         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:a5389e7d-d431-43bb-8d2c-c68cdfdd10fe"
+          "urn:3c0180cc-d6d3-4ccc-8f38-fe8174ca9257"
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         "Label": "3dClustSim",
-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:a5389e7d-d431-43bb-8d2c-c68cdfdd10fe"
+          "urn:3c0180cc-d6d3-4ccc-8f38-fe8174ca9257"
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-        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:c09831f3-2daa-4d46-8cc2-8d3a6d13e061"
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         "Label": "gen_ss_review_scripts.py",
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+        "AssociatedWith": "urn:a045e7a9-d02f-4c07-9480-ef691c027817",
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         "Parameters": {
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@@ -586,22 +586,22 @@
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+        "@id": "urn:ac6fc9f2-1d1f-4612-ad97-fb964bfe01e8",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:3f372617-f0ba-4f3a-86f0-ce2ea6ec39c1",
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         "AtLocation": "$output_dir/stimuli",
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         "Label": "tone_counting_onset_times.txt",
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@@ -609,7 +609,7 @@
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+        "@id": "urn:8596c632-de2b-47b7-b261-0bcc1b11efb4",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_one_sided_t_test/tone_counting_probe_duration.txt",
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@@ -617,13 +617,13 @@
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+        "@id": "urn:9e80f43e-0a65-4409-8521-93ce44d2a2f8",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:e8af30f7-c70b-43bf-a4d0-b50f658c6762"
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@@ -631,13 +631,13 @@
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+        "@id": "urn:77134def-200f-4e91-bf5b-5beae8522368",
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         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:293a9acc-2652-48ff-842a-2f9da1b4ba07"
+        "GeneratedBy": "urn:d17f25f0-c1e6-432f-9d55-370e965b4514"
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         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -645,13 +645,13 @@
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+        "@id": "urn:b723daf9-7d1e-4070-a15b-11cbabd9f404",
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         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:071d1481-5649-48e9-9846-6a921f7ea79c"
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         "digest": {
@@ -659,16 +659,16 @@
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+        "@id": "urn:d9e0442e-5d73-4c85-8e4d-66f08337e10b",
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         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:e57b37e7-704b-4d09-af2e-ab42fd8cfe33",
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+        "@id": "urn:35ff0a25-7087-4dde-92e3-84a2069160fa",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -676,25 +676,25 @@
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-        "@id": "urn:ac189004-8387-4e75-bc93-a36cdff27e9f",
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         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:5d3ffd11-a23c-4698-a32d-c48296ce3859",
+        "GeneratedBy": "urn:4c94d596-d066-4fae-b4ac-31bd8a4eb431",
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         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:9fc62455-73dd-4732-8555-2a83319f69e3",
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         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -702,7 +702,7 @@
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+        "@id": "urn:66c6f4a5-e5db-46b2-b07c-e741461d17cd",
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@@ -710,16 +710,16 @@
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-        "@id": "urn:6cd92a40-17cd-479a-9600-66c386988190",
+        "@id": "urn:e292cc0c-ded7-4fa3-ab9e-51890896d4dc",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:4754665a-16eb-480f-bfcd-88b9d170d65a",
+        "GeneratedBy": "urn:dbf6e423-b7f4-467c-99e7-f781accfb665",
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-        "@id": "urn:4f3d0144-7485-4165-a2fe-005b88ebf5e6",
+        "@id": "urn:47364376-8009-46b5-9c2c-50f39f9aa7b7",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -727,7 +727,7 @@
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       {
-        "@id": "urn:6aedf88b-6fe2-45d4-b5b7-28bf7c208071",
+        "@id": "urn:656ab567-c679-4a66-9a7e-b12940a77924",
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@@ -735,7 +735,7 @@
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       {
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@@ -743,16 +743,16 @@
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+        "@id": "urn:43dca89a-d0f3-4707-b491-9bf44284d9a6",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:41a204e9-1848-4df7-93a1-c30b986f3042",
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@@ -760,34 +760,34 @@
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-        "GeneratedBy": "urn:7d32a82f-24af-4bee-91b0-02ee1102c9f5",
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-        "GeneratedBy": "urn:0552d4c0-6c50-45cc-bcbb-d0fff1a58c2e",
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@@ -795,16 +795,16 @@
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-        "GeneratedBy": "urn:06728249-4ffc-4603-b140-7caa08e743c2",
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@@ -812,16 +812,16 @@
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@@ -829,16 +829,16 @@
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           "sha256": "a35a66cce2e2d487762823c197ca1edc450a9887f46f125826b69c5021662f95"
         }
       },
       {
-        "@id": "urn:deec3fb9-4e28-4d7c-8a47-599403e4edcd",
+        "@id": "urn:2eace7c1-48d7-42d0-8a53-9cd10b219f30",
         "Label": "out.gcor.1D",
         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
       },
       {
-        "@id": "urn:4cef8fb6-2bfe-4c0e-85b8-4020e5ea01e3",
+        "@id": "urn:3318f2f4-021e-4945-ac68-a79194eece86",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:1c42556b-6ea5-40c5-ba7f-d049ffbfac3c",
+        "GeneratedBy": "urn:a4a72b44-266e-4cf8-843b-40c5956df505",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
         }
       },
       {
-        "@id": "urn:bd25383b-d975-4195-831d-bb521d441d8b",
+        "@id": "urn:96b92e44-3256-4d88-85cd-4eed25cd88cd",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit+tlrc",
         "digest": {
@@ -1221,16 +1221,16 @@
         }
       },
       {
-        "@id": "urn:62cef0cc-1cb3-4d9b-b110-a01298294d4b",
+        "@id": "urn:0cc3f639-004a-4d2d-af86-b5c8d36f74bf",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:331280a9-cad6-443e-8ec0-0bd032dec1f7",
+        "GeneratedBy": "urn:5b26ef30-7cf9-4d67-9818-95e38cea6091",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:cf72bf6d-c398-4e69-9a8d-dbd8c530a31e",
+        "@id": "urn:9c84233e-4c3f-40e2-8828-b10d5fc0b1ef",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1238,16 +1238,16 @@
         }
       },
       {
-        "@id": "urn:8b99d805-d291-4e91-b46b-a85013a83cfb",
+        "@id": "urn:cd671150-53fa-415a-ad4f-d28f69a46244",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:fd23797b-703e-44e6-9ce0-93a6c6659007",
+        "GeneratedBy": "urn:1aa7103f-ebf2-4568-be03-f2d1e223af21",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:8adb28e5-349d-4f53-8b18-4ed3975fae39",
+        "@id": "urn:d14b7740-d4ad-41e7-8204-c7cb9f0d331a",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[3]'",
         "digest": {
@@ -1255,16 +1255,16 @@
         }
       },
       {
-        "@id": "urn:9686bceb-c078-427b-bb3f-d03889dc3a4d",
+        "@id": "urn:4dde7fde-d83c-4871-9581-a2f80c237204",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:0f2a2124-3de2-4554-af3f-3833d2222dae",
+        "GeneratedBy": "urn:1459fb22-3e8e-4f90-898a-d1defbf3be77",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
         }
       },
       {
-        "@id": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
+        "@id": "urn:c17bb85f-17c1-41eb-9367-0ee3a76060b5",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
         "digest": {
@@ -1272,16 +1272,16 @@
         }
       },
       {
-        "@id": "urn:1e71f56b-d494-46ce-ba1b-e6e6a05abd1f",
+        "@id": "urn:66c4a64b-24fb-4355-b6f0-745d29806e79",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:14a31446-8871-49fa-b1e0-e00260791d2c",
+        "GeneratedBy": "urn:b390c087-192d-44fe-8042-1bcca38ab6ae",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:94f1e1b4-8e76-41fb-9f3b-d60517272174",
+        "@id": "urn:1ebe5cf2-e3de-4260-b209-df16e3768d62",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:f331cbfd-e6cb-4474-b9d2-f5093b12b4b7",
+        "@id": "urn:f9294378-917d-4969-b1ea-e82eef53f208",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:f3a1b8eb-becf-4260-8526-cd7f14a93549",
+        "GeneratedBy": "urn:71135527-0811-46d0-887d-1b56a42edc2e",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:e350024b-aa85-47b7-a4a4-239310870a5f",
+        "@id": "urn:60f84ff1-e701-4e52-8dbe-dca9e99a1c2f",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:8e28756c-7915-4747-a230-d16d1b31fd66",
+        "GeneratedBy": "urn:2159c5ee-3437-45f6-ba8e-e352b535e409",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:7be1cf76-746a-42a3-aa4f-a4ae45ef4735",
+        "@id": "urn:e502668a-42ab-4093-9bf5-a7a57645e2ad",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:1f3ccb95-5c68-4eda-a0e2-23aef8d5c592",
+        "GeneratedBy": "urn:b8e6f38b-bdf3-4d81-9788-8890b5877ee1",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:c04a985a-03ce-4123-916b-52f1738c5371",
+        "@id": "urn:a4807546-b85f-4467-b4e1-5302e8f0d87c",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:194a0e78-c788-4530-b7c0-0155f909d523",
+        "GeneratedBy": "urn:63a6fef4-fa62-4df6-8328-87f0bddf63b2",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:ef22e358-c84a-4ca8-b3e2-005482fd2886",
+        "@id": "urn:53043b2a-cb9b-43cc-8521-29127997d9dc",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:33ed9bcb-6059-4783-88f7-1aa00fe0a5c0",
+        "GeneratedBy": "urn:640db747-51b4-4c85-a15e-94117c886ae4",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:c09831f3-2daa-4d46-8cc2-8d3a6d13e061",
+        "@id": "urn:2eb30742-cf34-4fe0-8ac9-40a44a229224",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:307ab064-d2fc-4591-bb45-46dd57cf2d2d",
+        "@id": "urn:907b32a8-d868-44e1-9252-fa126deb550f",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:a0828193-6c5d-4073-910f-4d6ef6b19f1a",
+        "GeneratedBy": "urn:ecd29557-0d0a-4e07-b160-323fcdaf374d",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_alt_onesided_proc_bloc.jsonld b/examples/from_parsers/afni/afni_alt_onesided_proc_bloc.jsonld
index edddb4a50..9e92d84cb 100644
--- a/examples/from_parsers/afni/afni_alt_onesided_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_alt_onesided_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "@id": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:0f6e1769-0854-4759-a3da-2c830f0e3125",
+        "@id": "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_one_sided_t_test/tone_counting_onset_times.txt ./afni_one_sided_t_test/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:4125e09e-1e8f-485f-a75a-200cf5ed26c0",
-          "urn:0f4d54c0-a22d-4e21-8302-30a73e21a790",
-          "urn:ac5590b1-bd70-4147-b25f-7328029e7372"
+          "urn:11a44ba1-105e-4ecd-ad59-a75e07367e7d",
+          "urn:d0dbc87f-48a6-4316-8b9e-dee1b99104a4",
+          "urn:d1982c0f-816a-4e2d-8d0d-c5a1c170463f"
         ]
       },
       {
-        "@id": "urn:8c453e99-08d2-4dc0-be26-4e3d7142869f",
+        "@id": "urn:eff31da6-2401-4b0b-9b66-ce85299c71b1",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:228beb26-f70c-48f3-9558-0bd838529fbe"
+          "urn:3fd2d4d5-677d-469b-bae5-9d764bd9e696"
         ]
       },
       {
-        "@id": "urn:937bd6fc-0ed1-424a-bbc8-828824a18e79",
+        "@id": "urn:e7c87b95-68d4-46a7-9868-7002c48bfb56",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:a2819925-6bb1-4437-91bb-8750d8d911eb",
-          "urn:26ab105c-e2ae-422f-bea8-19180cabf617"
+          "urn:75b7b742-134c-4743-b2c6-7783513975e0",
+          "urn:cacb4e68-b84c-40a7-8f92-26fd5ff055a9"
         ]
       },
       {
-        "@id": "urn:259ba45e-774a-49f8-857b-82f0fe731dd6",
+        "@id": "urn:e12e8133-9cfa-4aed-a7ab-09d79b1e2745",
         "Label": "tshift",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:a2819925-6bb1-4437-91bb-8750d8d911eb"
+          "urn:75b7b742-134c-4743-b2c6-7783513975e0"
         ]
       },
       {
-        "@id": "urn:abf735c9-2667-495b-9fa1-321a42d9e42b",
+        "@id": "urn:8b3e58d2-01fa-49f8-a673-9431aaccfc47",
         "Label": "align",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:7a5e09c8-074d-47d7-a7e6-7757a3b0002c",
-          "urn:fce53e58-532c-4750-882a-d04ef8ea1b35"
+          "urn:c3c6543b-54bc-42b7-9412-951ebc52f6b4",
+          "urn:f0039bc0-40e7-4b50-bf95-40e5d7fa3bb4"
         ]
       },
       {
-        "@id": "urn:52ac7507-1b78-451b-8d71-a8134799b096",
+        "@id": "urn:c3e90ffd-834c-472b-87c2-028326d08e1a",
         "Label": "tlrc",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:fc85c9c4-03af-41d2-a7d3-5665cd1240cc",
-          "urn:294250c1-3f20-4e89-9043-505157d79e92",
-          "urn:b5e0225f-eff0-4e8c-beb9-09e171bbf0a1"
+          "urn:7b0e85df-6682-4dd4-b97d-04aadce54c0d",
+          "urn:c3d81b35-0bb9-41de-9ab5-8b111d19f41a",
+          "urn:8647e6ec-4a8a-426b-a5fa-679949689216"
         ]
       },
       {
-        "@id": "urn:4ba9541e-ec77-485c-bc03-5344cbfa840c",
+        "@id": "urn:2a9293d2-9451-4c8c-a229-36b221093ba4",
         "Label": "volreg",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:17f65b7b-4973-4314-93d1-559ab4356cc9",
-          "urn:17f65b7b-4973-4314-93d1-559ab4356cc9",
-          "urn:b5e0225f-eff0-4e8c-beb9-09e171bbf0a1",
-          "urn:fbeeaff6-baec-49f5-a079-172e049a9402",
-          "urn:17f65b7b-4973-4314-93d1-559ab4356cc9",
-          "urn:fbeeaff6-baec-49f5-a079-172e049a9402",
-          "urn:2cb625e4-d86b-4d08-8244-67e8ecce7a1a",
-          "urn:106667e2-534d-4083-93fd-ff640a2eb33f",
-          "urn:c570a9cb-ff5a-493a-8eb2-a0ef15df96d5",
-          "urn:9b6dc0b4-91fd-4b34-9598-11ed55ece512",
-          "urn:e6d2ef28-055a-4391-baea-97dd8a9d185e",
-          "urn:f6b197d3-067e-40ee-8d6a-f03cda41761e",
-          "urn:fbeeaff6-baec-49f5-a079-172e049a9402",
-          "urn:00e42115-626f-4d62-82d8-d85d631329e5"
+          "urn:1e0b2ec0-5b80-47ba-ad3c-5b8cd6caa41c",
+          "urn:1e0b2ec0-5b80-47ba-ad3c-5b8cd6caa41c",
+          "urn:8647e6ec-4a8a-426b-a5fa-679949689216",
+          "urn:0d2391fb-541e-4ca4-9322-d7ead2a3faba",
+          "urn:1e0b2ec0-5b80-47ba-ad3c-5b8cd6caa41c",
+          "urn:0d2391fb-541e-4ca4-9322-d7ead2a3faba",
+          "urn:1f7d23d2-5467-4a69-9915-466cc446167b",
+          "urn:2272d4b8-d106-48ff-a984-c7533e17d0ab",
+          "urn:dc43357b-0d1e-4e30-a9ee-8be5fcb5feb2",
+          "urn:2c85290f-b3f2-431b-91c4-402a54caa3b8",
+          "urn:24ef9e82-b791-4254-9443-63afae794945",
+          "urn:c6df2258-37b7-44c3-93a9-668c7ca69446",
+          "urn:0d2391fb-541e-4ca4-9322-d7ead2a3faba",
+          "urn:b4433074-6ca1-4071-9831-979ee1865166"
         ]
       },
       {
-        "@id": "urn:28ba5f12-1365-4bbb-ab4a-159bd0b33b34",
+        "@id": "urn:bfdf23b1-84f5-493b-af60-ac30b7f045e3",
         "Label": "blur",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:7c75b9d4-e136-4ed6-b193-472e6a391505",
-          "urn:37420101-c925-4820-bf6d-1042ad709005"
+          "urn:33a88f78-2a21-48c5-86a8-4ae6601a7bd4",
+          "urn:f5a56707-32a3-4cd0-9a54-dd077cd0af99"
         ]
       },
       {
-        "@id": "urn:c6a0afd0-daa5-4243-aa57-e91e9b546865",
+        "@id": "urn:a7bc49b5-4076-4c12-a8e1-918c5151c889",
         "Label": "mask",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:fc554388-45db-473b-bbeb-5bf07fa85ca2",
-          "urn:fbeeaff6-baec-49f5-a079-172e049a9402",
-          "urn:57ffb538-8bfb-451f-86b0-b0206ccfa026",
-          "urn:8c2d444b-075c-4191-bf34-335cfe698345",
-          "urn:55e6156b-c2e4-4d1d-a9a8-a7a9fcf74833",
-          "urn:bc3512b9-619b-476c-bc4a-880a9ae12666",
-          "urn:55e6156b-c2e4-4d1d-a9a8-a7a9fcf74833",
-          "urn:bc3512b9-619b-476c-bc4a-880a9ae12666",
-          "urn:e76b0898-df47-4906-9f8a-87374cd4bc62",
-          "urn:57ffb538-8bfb-451f-86b0-b0206ccfa026",
-          "urn:72363f1e-f5ea-4349-8948-478f8f0659f9"
+          "urn:5b3dfb16-6266-481a-8853-05f9d3d63907",
+          "urn:0d2391fb-541e-4ca4-9322-d7ead2a3faba",
+          "urn:e2038ef4-ff24-4366-bfc1-1a9a292de9a3",
+          "urn:edf7efc4-5506-41fe-a639-b0288c6f9929",
+          "urn:a876f85d-2556-4f1c-bc99-507e89425058",
+          "urn:f8678cd3-2fbe-4b0a-b6ce-7a5607cf6e49",
+          "urn:a876f85d-2556-4f1c-bc99-507e89425058",
+          "urn:f8678cd3-2fbe-4b0a-b6ce-7a5607cf6e49",
+          "urn:09a35bda-f038-4046-a2ba-bdf2ec4a47d8",
+          "urn:e2038ef4-ff24-4366-bfc1-1a9a292de9a3",
+          "urn:5212afa6-9451-4b1b-96ff-74703db15b8e"
         ]
       },
       {
-        "@id": "urn:7403f17c-c790-471e-8b6d-55d5650cb385",
+        "@id": "urn:499c0245-c268-46f5-93fb-bd3f82942b3e",
         "Label": "scale",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:fc554388-45db-473b-bbeb-5bf07fa85ca2",
-          "urn:fc554388-45db-473b-bbeb-5bf07fa85ca2",
-          "urn:d50db812-375c-4601-92d1-9324de903322",
-          "urn:f6b197d3-067e-40ee-8d6a-f03cda41761e"
+          "urn:5b3dfb16-6266-481a-8853-05f9d3d63907",
+          "urn:24ef9e82-b791-4254-9443-63afae794945",
+          "urn:5b3dfb16-6266-481a-8853-05f9d3d63907",
+          "urn:60b6e59b-e67c-40ea-a6c5-00fa313e67c7"
         ]
       },
       {
-        "@id": "urn:e276d06e-84be-4349-8afb-33c503367cc2",
+        "@id": "urn:9daf71b2-6838-42b4-a3e4-bd1d76fe79f9",
         "Label": "regress",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:8fa0af1f-38fc-4157-81f5-a87d031deb90",
-          "urn:8fa0af1f-38fc-4157-81f5-a87d031deb90",
-          "urn:8fa0af1f-38fc-4157-81f5-a87d031deb90",
-          "urn:15e916d5-27d4-444d-a43d-e713ae6026bc",
-          "urn:15e916d5-27d4-444d-a43d-e713ae6026bc",
-          "urn:5207d313-7a90-44e0-8017-473f8c0516b2",
-          "urn:bbed6eaf-912f-44a5-ad69-bcdd07b5611c",
-          "urn:9bf6596d-5bb9-4781-8357-feaaccd82518",
-          "urn:6e005855-789f-4ce9-8fe7-417db70629cc",
-          "urn:57ffb538-8bfb-451f-86b0-b0206ccfa026",
-          "urn:743b2c7e-35e5-4c6b-84e1-4c69ba55c9d8",
-          "urn:8172d375-1bc3-425a-b82f-2e1c215b9f7c",
-          "urn:ec4e23f3-d608-4e76-b1d0-afb393f4f5af",
-          "urn:2b061de6-9339-4873-b556-40feb2d7bb4f",
-          "urn:cefdfa11-917c-4d55-870b-b181f657575f",
-          "urn:998920fc-bc8a-4ead-aac5-a44e39b2a4c0",
-          "urn:439259c5-7d95-4c8d-83ab-ab595ec441a1",
-          "urn:439259c5-7d95-4c8d-83ab-ab595ec441a1"
+          "urn:3854bb96-45ee-42d9-bdf9-bbdbef7bd919",
+          "urn:3854bb96-45ee-42d9-bdf9-bbdbef7bd919",
+          "urn:3854bb96-45ee-42d9-bdf9-bbdbef7bd919",
+          "urn:e73688be-08fe-432e-be79-af3c6e4d3fcb",
+          "urn:e73688be-08fe-432e-be79-af3c6e4d3fcb",
+          "urn:76f34313-4036-4758-aeb7-417bdfa5b93a",
+          "urn:088f075e-c210-425a-a867-c66589f1c2c4",
+          "urn:015e9618-f2b6-44d9-8ebf-d24749832865",
+          "urn:e2038ef4-ff24-4366-bfc1-1a9a292de9a3",
+          "urn:ee5ecfe3-26a7-4aa0-a378-d17e1408c66d",
+          "urn:3a654753-b045-43d9-91af-47a534e1ddf0",
+          "urn:45ad5d74-508c-4c18-bae0-c2b973d3c784",
+          "urn:1d5fc7c1-5967-451b-9074-9ecff2ec0f09",
+          "urn:22644854-5b21-46b9-8f42-4e730f48909b",
+          "urn:5599d82d-e9dc-49b9-ba3d-62d2fef3c704",
+          "urn:7a540544-90c6-42f9-9ca4-3ccb8a141ace",
+          "urn:045c8348-5186-4209-9572-bd0dcd050d80",
+          "urn:045c8348-5186-4209-9572-bd0dcd050d80"
         ]
       },
       {
-        "@id": "urn:a8be1d24-6de4-45b2-92ad-dc44be445319",
+        "@id": "urn:27235296-0b45-4174-9cf8-5dba5dbb6656",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:57ffb538-8bfb-451f-86b0-b0206ccfa026",
-          "urn:57ffb538-8bfb-451f-86b0-b0206ccfa026",
-          "urn:57ffb538-8bfb-451f-86b0-b0206ccfa026"
+          "urn:e2038ef4-ff24-4366-bfc1-1a9a292de9a3",
+          "urn:e2038ef4-ff24-4366-bfc1-1a9a292de9a3",
+          "urn:e2038ef4-ff24-4366-bfc1-1a9a292de9a3"
         ]
       },
       {
-        "@id": "urn:8c4107d0-f88c-4a4c-9357-6e1e19ad1201",
+        "@id": "urn:4c89ad48-ba0f-45e9-b026-e813b7816d32",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
+        "AssociatedWith": "urn:6418fb3a-4697-42cb-844f-98221898c9a4",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:97a56b57-4ac3-43c8-a6e1-bf20b58206dd"
+          "urn:0c2f6818-7e94-4d28-8d58-046bef4826bd"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:4125e09e-1e8f-485f-a75a-200cf5ed26c0",
+        "@id": "urn:11a44ba1-105e-4ecd-ad59-a75e07367e7d",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_one_sided_t_test/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:0f4d54c0-a22d-4e21-8302-30a73e21a790",
+        "@id": "urn:d0dbc87f-48a6-4316-8b9e-dee1b99104a4",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_one_sided_t_test/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:ac5590b1-bd70-4147-b25f-7328029e7372",
+        "@id": "urn:d1982c0f-816a-4e2d-8d0d-c5a1c170463f",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:8eebfcaf-f179-4ce4-83df-6d852735775d",
+        "@id": "urn:8c844809-356a-415e-bce7-a1036132d1eb",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:0f6e1769-0854-4759-a3da-2c830f0e3125",
+        "GeneratedBy": "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:ce469927-3e7f-4362-b6fc-0cca4d0aa043",
+        "@id": "urn:cd14b883-d42f-4539-a28d-9c0afc94d394",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:0f6e1769-0854-4759-a3da-2c830f0e3125"
+        "GeneratedBy": "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f"
       },
       {
-        "@id": "urn:64845e67-36b3-45b7-a4bb-2e3a3460a920",
+        "@id": "urn:128c7da5-ae5e-4ea1-85ff-004497f4cfd6",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:0f6e1769-0854-4759-a3da-2c830f0e3125"
+        "GeneratedBy": "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f"
       },
       {
-        "@id": "urn:08d57a05-4f66-4823-85e2-c934a8c15fa0",
+        "@id": "urn:9a8178c0-e37c-46d4-97cf-dcb710a6c585",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:0f6e1769-0854-4759-a3da-2c830f0e3125"
+        "GeneratedBy": "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f"
       },
       {
-        "@id": "urn:228beb26-f70c-48f3-9558-0bd838529fbe",
+        "@id": "urn:3fd2d4d5-677d-469b-bae5-9d764bd9e696",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:468ccc66-cf3f-46b5-8d4b-e7e23acd6202",
+        "@id": "urn:44507117-d812-483e-8273-42bee72dae49",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:8c453e99-08d2-4dc0-be26-4e3d7142869f"
+        "GeneratedBy": "urn:eff31da6-2401-4b0b-9b66-ce85299c71b1"
       },
       {
-        "@id": "urn:a2819925-6bb1-4437-91bb-8750d8d911eb",
+        "@id": "urn:75b7b742-134c-4743-b2c6-7783513975e0",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:26ab105c-e2ae-422f-bea8-19180cabf617",
+        "@id": "urn:cacb4e68-b84c-40a7-8f92-26fd5ff055a9",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:7ce0ef63-f223-435e-8607-3e688090e616",
+        "@id": "urn:41107f04-1af4-41a4-81c7-4e597cd0c7d7",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:937bd6fc-0ed1-424a-bbc8-828824a18e79",
+        "GeneratedBy": "urn:e7c87b95-68d4-46a7-9868-7002c48bfb56",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:bb0d45ca-b60f-4985-b5c1-879a7474c556",
+        "@id": "urn:772e9d5e-658c-470c-864a-5c2ca5163b82",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:937bd6fc-0ed1-424a-bbc8-828824a18e79",
+        "GeneratedBy": "urn:e7c87b95-68d4-46a7-9868-7002c48bfb56",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:a2819925-6bb1-4437-91bb-8750d8d911eb",
+        "@id": "urn:75b7b742-134c-4743-b2c6-7783513975e0",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:a7f23811-e909-45a2-9551-846e81269793",
+        "@id": "urn:2651517a-d223-43a6-8156-df647cf71859",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:259ba45e-774a-49f8-857b-82f0fe731dd6",
+        "GeneratedBy": "urn:e12e8133-9cfa-4aed-a7ab-09d79b1e2745",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:7a5e09c8-074d-47d7-a7e6-7757a3b0002c",
+        "@id": "urn:c3c6543b-54bc-42b7-9412-951ebc52f6b4",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:fce53e58-532c-4750-882a-d04ef8ea1b35",
+        "@id": "urn:f0039bc0-40e7-4b50-bf95-40e5d7fa3bb4",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:8a892058-4a73-4e1e-91a1-50996c954677",
+        "@id": "urn:731707e8-ab6e-4f05-ad4b-e7145f2957bb",
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@@ -671,7 +671,7 @@
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@@ -794,7 +794,7 @@
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@@ -802,7 +802,7 @@
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@@ -810,7 +810,7 @@
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@@ -818,133 +818,133 @@
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@@ -952,34 +952,34 @@
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@@ -987,10 +987,10 @@
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diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc.jsonld b/examples/from_parsers/afni/afni_bi_sided_t_test_proc.jsonld
index 0b1a613de..199793c34 100644
--- a/examples/from_parsers/afni/afni_bi_sided_t_test_proc.jsonld
+++ b/examples/from_parsers/afni/afni_bi_sided_t_test_proc.jsonld
@@ -4,7 +4,7 @@
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+        "@id": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
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       },
       {
-        "@id": "urn:17b70280-d407-407f-820c-85dbabbdcd62",
+        "@id": "urn:f9655809-f177-40cc-84aa-562f4ab32877",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:d2fe0cae-b7d0-4df9-9cb1-c6858fbada4a"
+          "urn:52020508-61e6-4dfe-a196-64f7e40dc726"
         ]
       },
       {
-        "@id": "urn:1170b37b-767e-4327-8f76-f61b204c411c",
+        "@id": "urn:077324da-6b60-44f7-925b-9c45937d10db",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:374840d1-759f-4a7e-babe-e91ec845f206"
+          "urn:cb896b82-c1f6-4b6e-8517-e6b9b39074f0"
         ]
       },
       {
-        "@id": "urn:8a7d6591-f208-4564-b14f-dbda25796f47",
+        "@id": "urn:2956e891-bc2d-4540-acbf-aa3927057795",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:7f284a13-dda9-4a1a-9fb1-c574b309533a"
+          "urn:1cbd5316-e669-4ad5-8a60-7933b80ed67c"
         ]
       },
       {
-        "@id": "urn:d3666d78-32c0-424a-b170-f25ad8f10722",
+        "@id": "urn:48807715-825b-46b4-b198-c4820efdf562",
         "Label": "cat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:2fcd8594-4286-4cdf-9100-4477f5bdce8f"
+          "urn:6efa21e0-6d91-4904-86e8-79b259347c7f"
         ]
       },
       {
-        "@id": "urn:259c8664-6867-4a47-aaaf-625dc3d74aba",
+        "@id": "urn:9af51269-2e27-4c5d-959d-c8ffae1ee4d9",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:7f284a13-dda9-4a1a-9fb1-c574b309533a"
+          "urn:1cbd5316-e669-4ad5-8a60-7933b80ed67c"
         ]
       },
       {
-        "@id": "urn:e3b85ea8-9b53-480c-9b9b-5a44880d791e",
+        "@id": "urn:1cb0b710-db77-4b58-aaa5-ad2f0c1455fb",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:514599eb-752f-4c6f-8b38-8115befe690d",
-          "urn:f880fb5b-b64a-469c-8f5e-b7f51e0f3448"
+          "urn:333734aa-0214-4c5f-b7e9-f648101328da",
+          "urn:d8cbec8d-e8ab-497a-8905-72c41e247e8a"
         ]
       },
       {
-        "@id": "urn:1a77145c-9382-44e6-a248-643dc21229ae",
+        "@id": "urn:bd0e45d1-072d-4eb7-bf69-3fda63ddfba9",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:04aa7780-bc6e-4a8d-aa54-7cd932ad6f2b",
-          "urn:7b12e10c-168c-431b-8858-04df3b97fead"
+          "urn:242c05a1-10e3-45a9-aa34-8e4799bf79d6",
+          "urn:ef481cba-a841-48ab-91a2-700b3b045a3e"
         ]
       },
       {
-        "@id": "urn:6e7ad16e-eb28-4d13-8225-23c0fcee917f",
+        "@id": "urn:f2905fa3-7c8d-4629-bc94-3108b1af34f2",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:b1c9bd79-dd7f-49ee-ba68-d2adaec2898a"
+          "urn:5deae2c5-d728-4f5b-9d1e-3ac865f0e162"
         ]
       },
       {
-        "@id": "urn:088af78f-6282-40f8-a566-d2d4391419f2",
+        "@id": "urn:a02c3dfa-efee-4642-a8db-093fed35d380",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:519f480a-ebb7-4fdc-a9fc-54ebeeccfaf5"
+          "urn:b281ae59-f7ca-40e4-a206-7c9fc41d6a24"
         ]
       },
       {
-        "@id": "urn:b333ad25-d2ab-405d-b5c8-daad5d8d6fb9",
+        "@id": "urn:643c3f61-e81e-440d-9d0a-da03147eb483",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:519f480a-ebb7-4fdc-a9fc-54ebeeccfaf5"
+          "urn:b281ae59-f7ca-40e4-a206-7c9fc41d6a24"
         ]
       },
       {
-        "@id": "urn:b11b4f41-0f70-4201-a5f1-0660cffdd667",
+        "@id": "urn:71b7fd66-39e5-4104-bec8-598dafdea9cc",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:b1c9bd79-dd7f-49ee-ba68-d2adaec2898a"
+          "urn:5deae2c5-d728-4f5b-9d1e-3ac865f0e162"
         ]
       },
       {
-        "@id": "urn:bd73c660-aba1-4f2c-9734-58d416895f83",
+        "@id": "urn:c9c41032-a75b-4535-84cd-acb432b3d541",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:905a59ca-ff49-4ab5-bb91-c5d11710b0e3",
-          "urn:519f480a-ebb7-4fdc-a9fc-54ebeeccfaf5",
-          "urn:dd8e493d-1bd7-4016-a9e2-7ed48c6e8e2e"
+          "urn:327b460c-e751-42b0-855a-b65d10971e57",
+          "urn:b281ae59-f7ca-40e4-a206-7c9fc41d6a24",
+          "urn:e3486423-f966-4ef5-be39-ed9946ed911d"
         ]
       },
       {
-        "@id": "urn:3938fd72-243c-41ae-bf51-1884da78d24f",
+        "@id": "urn:9b751396-350f-4f01-be6a-50dbe5855303",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:905a59ca-ff49-4ab5-bb91-c5d11710b0e3",
-          "urn:e5e12d31-550d-40e0-9a89-2ddf0ad30061",
-          "urn:dd8e493d-1bd7-4016-a9e2-7ed48c6e8e2e"
+          "urn:327b460c-e751-42b0-855a-b65d10971e57",
+          "urn:74530b45-b9c8-451d-91d2-bbcc251aa486",
+          "urn:e3486423-f966-4ef5-be39-ed9946ed911d"
         ]
       },
       {
-        "@id": "urn:08838f8b-3cc2-49dc-9b36-efacbcdf397a",
+        "@id": "urn:0d62c78f-ee0a-41df-9d73-80d13c64722b",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:25344009-31f5-4ae5-8074-e29adc47d948"
+          "urn:6fb270cb-246a-489a-9655-358899756167"
         ]
       },
       {
-        "@id": "urn:fd8a936e-12e6-4ebe-977d-d5b97619dbed",
+        "@id": "urn:b13a8837-4e83-4ffe-8583-44ad77c778bf",
         "Label": "cat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:da0c59ff-c977-4424-b811-72240abb18aa"
+          "urn:c2a01973-43c7-40c2-9965-0854e22d0f72"
         ]
       },
       {
-        "@id": "urn:fbdc3b88-09e6-47d8-ae76-2ec64c338c8e",
+        "@id": "urn:d8969622-62e2-4899-b5bc-b94a3a671e93",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:0e2cb7ba-383b-47de-a90f-98f7dd0e981d"
+          "urn:1a4cacfc-6c2f-4960-8b86-7bcda40db9b3"
         ]
       },
       {
-        "@id": "urn:ca299055-a662-4998-b793-5b0a8ffc6237",
+        "@id": "urn:330d4fc2-a9cb-4bec-a07d-d6330eba562c",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:1fe0af2e-2c86-496a-82fe-b05267d653a0",
-          "urn:228f2206-5248-49de-9298-3e4562c227d9"
+          "urn:7c985012-41b6-48aa-8ae4-c809eb06bb31",
+          "urn:86081194-0636-47f1-9e3b-b68114def1d2"
         ]
       },
       {
-        "@id": "urn:7805b51e-d4d1-4701-9394-a93419312766",
+        "@id": "urn:f71aba7e-cfbf-475d-a938-f89e03affa34",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:905a59ca-ff49-4ab5-bb91-c5d11710b0e3"
+          "urn:327b460c-e751-42b0-855a-b65d10971e57"
         ]
       },
       {
-        "@id": "urn:ec1b1898-9979-437d-8086-12211a8246ee",
+        "@id": "urn:6bb2f2da-6e50-4376-958c-d807ba9130f4",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:2f7bcf43-f434-49be-8f47-e1b2424331f9"
+          "urn:42c4bd6e-e9ad-4e7d-a0c2-4e7992d3bc12"
         ]
       },
       {
-        "@id": "urn:95324e29-58ad-4796-a13f-2e51595196ce",
+        "@id": "urn:d351d30f-a4e9-40b2-9de0-e697ad8f4e22",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:80b85a97-9a44-4363-bf4d-4571c48de600",
-          "urn:1b369684-7345-49ad-beaa-51b801c6b8ca"
+          "urn:8273d1cf-36af-4d5a-b308-a5d717a67b33",
+          "urn:eb232e1e-58ae-4077-b3ad-87d1feb35b6c"
         ]
       },
       {
-        "@id": "urn:3c154151-508f-495a-880b-f27d12a12b9c",
+        "@id": "urn:968c32d6-2eb2-4c77-9682-582fcb20b7b3",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:0c7a2191-32e9-426b-8217-610f6a30b173"
+          "urn:df9d2191-8a3a-45c5-9650-403521b23e4d"
         ]
       },
       {
-        "@id": "urn:882d78ff-a57f-4922-b1b6-f92337927d99",
+        "@id": "urn:556ef24d-95ef-4bd6-9ece-befd90da3730",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:1629593c-f922-4212-9212-60de4c271db5",
+        "@id": "urn:cab660e8-ac9e-485b-9138-7d11f33d718e",
         "Label": "3dresample",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:905a59ca-ff49-4ab5-bb91-c5d11710b0e3",
-          "urn:53169fdb-f990-4ee6-a17d-f6a53e7f67d9"
+          "urn:327b460c-e751-42b0-855a-b65d10971e57",
+          "urn:cf470468-8935-47d3-9691-08ad68075642"
         ]
       },
       {
-        "@id": "urn:7a87bf8b-70b8-48ec-8085-804c62300433",
+        "@id": "urn:64d8d399-2f2a-45b7-b2f1-35d4a6bd86d0",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:baa47e1c-4dc8-4f43-a3e0-8197e323d309"
+          "urn:e0ebcb86-cf35-4440-ac64-822e3534baa4"
         ]
       },
       {
-        "@id": "urn:ec5c8b09-20b5-49bc-bedf-50e101ed332f",
+        "@id": "urn:5fb6a9ff-927f-44f5-bf62-36f29f8bc963",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:a0ec00b1-b359-4e9e-b8db-0bdafe8871ab",
-          "urn:fb88b08f-d332-441d-a8a3-021f387930fb"
+          "urn:861e89e6-1845-4582-a116-5e03e9fcc252",
+          "urn:f3d3c8eb-359a-40e9-8d1b-d12c2819bbfe"
         ]
       },
       {
-        "@id": "urn:9c29ef12-a4eb-487a-b06c-8e85de3822a7",
+        "@id": "urn:cefd6c7b-e87e-4af7-b301-5f5251f4cf59",
         "Label": "3ddot",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:a0ec00b1-b359-4e9e-b8db-0bdafe8871ab",
-          "urn:fb88b08f-d332-441d-a8a3-021f387930fb"
+          "urn:861e89e6-1845-4582-a116-5e03e9fcc252",
+          "urn:f3d3c8eb-359a-40e9-8d1b-d12c2819bbfe"
         ]
       },
       {
-        "@id": "urn:e88da71c-ca92-450d-b036-3f57bec6a16a",
+        "@id": "urn:5ef09dd0-e649-4deb-b02f-8328d272ded4",
         "Label": "3dresample",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:2662f46d-c87c-436f-8db5-59f78d0cf41c",
-          "urn:53169fdb-f990-4ee6-a17d-f6a53e7f67d9"
+          "urn:85c3ce0a-f7b8-45ed-91e7-a7a671050994",
+          "urn:cf470468-8935-47d3-9691-08ad68075642"
         ]
       },
       {
-        "@id": "urn:5d86a607-3005-48b0-bdf1-f80f1ffd0e59",
+        "@id": "urn:02936a64-481f-4382-8b6b-948a05e2ee63",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:6ad2c26d-6aab-4e86-bdf9-c83ad1cfe41b"
+          "urn:f5e4ae76-a5a0-4b3d-876d-4183e80d5a95"
         ]
       },
       {
-        "@id": "urn:0338e284-7f9c-4721-a7e4-40da815e05e6",
+        "@id": "urn:2486fe67-6767-4b41-ad86-0d8b7dd40624",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:0c7a2191-32e9-426b-8217-610f6a30b173"
+          "urn:df9d2191-8a3a-45c5-9650-403521b23e4d"
         ]
       },
       {
-        "@id": "urn:d0d06396-4c42-49c0-bd65-e7dc7f3e58e0",
+        "@id": "urn:26c558ba-8b6d-4b5c-bf5b-936db5ea9a5f",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:0c7a2191-32e9-426b-8217-610f6a30b173",
-          "urn:caf2279a-3820-496f-be73-ce7f46be7671",
-          "urn:228f2206-5248-49de-9298-3e4562c227d9"
+          "urn:7c985012-41b6-48aa-8ae4-c809eb06bb31",
+          "urn:b7b77d81-1384-436c-80a5-7f0f62115948",
+          "urn:df9d2191-8a3a-45c5-9650-403521b23e4d"
         ]
       },
       {
-        "@id": "urn:b1782bbc-0ad8-4cf5-a5ce-d586bc629dfa",
+        "@id": "urn:52b5a16d-e063-4b0b-828e-c4143d18e14d",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:bb16365e-1838-49ff-ad23-11b940e8bb26"
+          "urn:cc379f28-99f7-4692-87e4-3b93193bcb89"
         ]
       },
       {
-        "@id": "urn:a34697f5-7ad9-481b-bbfe-69d17ec623ff",
+        "@id": "urn:7891b04d-79c7-490c-b5ae-53a2d9225899",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:bb16365e-1838-49ff-ad23-11b940e8bb26"
+          "urn:cc379f28-99f7-4692-87e4-3b93193bcb89"
         ]
       },
       {
-        "@id": "urn:8e3b9744-4f69-484a-a671-33550a2b83bf",
+        "@id": "urn:f825b81b-a359-4837-9ddd-1c429b57df18",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:bb16365e-1838-49ff-ad23-11b940e8bb26"
+          "urn:cc379f28-99f7-4692-87e4-3b93193bcb89"
         ]
       },
       {
-        "@id": "urn:6fcd130b-13c0-4d8b-aa65-350265c93856",
+        "@id": "urn:53bc14bc-0fc7-4b7d-9de3-3ec77f7da912",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:cbfd75e0-0ece-4d05-8015-6b354b9673b4"
+          "urn:ec3fde1b-e382-4f29-a2ba-e04bbd8c559b"
         ]
       },
       {
-        "@id": "urn:8fc9963c-f12b-442b-a8fa-3fc8d36e22a1",
+        "@id": "urn:ada01202-ea7b-4b88-b337-d7350ee0a693",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:04f1479d-9fbc-4cb7-95d8-e59980f58461"
+          "urn:3fad8090-cbbc-4f6f-a231-9b8a6bbe5b50"
         ]
       },
       {
-        "@id": "urn:ca8682cd-a436-44c3-9c3f-dce9182257e8",
+        "@id": "urn:b346cab9-5b54-40ea-9de7-c8b74a75c790",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:cbfd75e0-0ece-4d05-8015-6b354b9673b4"
+          "urn:ec3fde1b-e382-4f29-a2ba-e04bbd8c559b"
         ]
       },
       {
-        "@id": "urn:93ba5941-eb9b-4d62-8502-5f902957b70d",
+        "@id": "urn:ee9fc801-0cec-47c2-b99d-60a01df64f52",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:c8dc470f-18f9-448e-a409-340bd4578f04"
+          "urn:59855331-85db-49d2-b637-e7f573189444"
         ]
       },
       {
-        "@id": "urn:19661992-cf39-4c57-8889-9f750299ca19",
+        "@id": "urn:a85a4a11-bd99-4e4a-b3dc-e021689042d4",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:9b25a4c9-acc3-486d-b147-bfc7fcb1c086"
+          "urn:d8335e2a-2948-4271-a9f9-e4b5155b8a41"
         ]
       },
       {
-        "@id": "urn:a501b619-9b7f-4a9e-b7dd-99a28cff7cd5",
+        "@id": "urn:0d27f1fd-4f17-4470-bcec-00f31d32585c",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:e14e4ef7-15c9-407d-88f4-a7b841746cb0",
-          "urn:7c351dec-b47c-4488-a1be-ca1a55fdeb1e",
-          "urn:53169fdb-f990-4ee6-a17d-f6a53e7f67d9"
+          "urn:c0e2232b-3121-49e4-9765-abca3e931e90",
+          "urn:cf470468-8935-47d3-9691-08ad68075642",
+          "urn:e3fa7976-f584-405e-adc8-f130bfa9a62d"
         ]
       },
       {
-        "@id": "urn:5b455206-6b26-48a8-87d5-36e77858fb21",
+        "@id": "urn:9256a39d-9dd7-4cc1-9cf9-d82a3e799545",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:4b37db3b-55f0-48c6-8364-f27cf3a480ee"
+          "urn:7caef081-9c3e-4cb6-b7db-69e7470b5478"
         ]
       },
       {
-        "@id": "urn:88ec6d95-8360-4138-8165-6d28f9b84980",
+        "@id": "urn:cd69bdd6-87b9-4324-8e15-9dfa7d9948bc",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:8774d01a-a6dd-4c0b-8182-170c0948c565",
+        "@id": "urn:1163e644-4c67-4a4a-8632-fef54fc43897",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:2b668af4-fe26-4fa7-b147-7a6123214e69"
+          "urn:98813b04-86b8-43e8-b7c1-7b79dc16b682"
         ]
       },
       {
-        "@id": "urn:f3a7b92f-d4e3-4600-92d4-7ffd78ecf0ab",
+        "@id": "urn:32da1042-3bfe-4549-b418-b69a601dbad5",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:66740f57-693a-4773-a79c-248ab7a34d24",
-          "urn:7f7c9933-2af8-4d36-bd84-1774cfe99bb6"
+          "urn:64ce8c11-0547-45c6-9800-a2a392488900",
+          "urn:88b6394b-ab36-4212-ada9-3823354cec18"
         ]
       },
       {
-        "@id": "urn:ee4d2236-e8f8-40a9-87da-519574228dc2",
+        "@id": "urn:332fb2ea-36f4-43c9-baea-0b38ef2a2179",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:4d974f57-b70e-4d4d-a845-906dc7319c45"
+          "urn:fcac9d40-80b9-4b4b-83e3-a11d7f74a441"
         ]
       },
       {
-        "@id": "urn:c6e21f69-c865-4c72-8480-f4f6ada95937",
+        "@id": "urn:02fb5596-8669-4c2a-9df6-600488e892b5",
         "Label": "1dcat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:5be34fc9-0f88-433e-9067-9ec682b8f6d1"
+          "urn:c8b07e4a-29df-4360-bb6b-0d4b76d035a2"
         ]
       },
       {
-        "@id": "urn:f2032de7-5c23-4bfa-beed-57f247f9085c",
+        "@id": "urn:1320e946-ac94-4740-9e0c-b6f97ad0d99b",
         "Label": "1dcat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:7936f9c4-88e8-41ee-bcf2-58b62401fc96"
+          "urn:8db107d7-034d-4963-a81d-edf6a4c19ab2"
         ]
       },
       {
-        "@id": "urn:83be6f1d-ca5b-46a5-910c-502c7c9c7f4b",
+        "@id": "urn:3ffb5f05-4a19-4865-b981-909b041426bb",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:ab7f17cd-0d77-4d6b-b16f-d47bd5087083"
+          "urn:d867fd7f-631d-420b-900e-78f8937f4436"
         ]
       },
       {
-        "@id": "urn:1a57c0d5-e75d-45e3-a73b-740bdc8bc395",
+        "@id": "urn:10f8b075-1fca-472e-b140-189ba027fbad",
         "Label": "1dcat",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:ab7f17cd-0d77-4d6b-b16f-d47bd5087083"
+          "urn:d867fd7f-631d-420b-900e-78f8937f4436"
         ]
       },
       {
-        "@id": "urn:161a3857-962d-4563-a6d7-35d5f15a4fef",
+        "@id": "urn:d3ee1eb9-ba34-4c1b-be52-8fb9737bcae5",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:53169fdb-f990-4ee6-a17d-f6a53e7f67d9"
+          "urn:cf470468-8935-47d3-9691-08ad68075642"
         ]
       },
       {
-        "@id": "urn:a8472bb9-2ead-43f6-8616-18f9aae4d8e0",
+        "@id": "urn:29e1c19f-538c-4342-9e76-a6866ccd580f",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:53169fdb-f990-4ee6-a17d-f6a53e7f67d9"
+          "urn:cf470468-8935-47d3-9691-08ad68075642"
         ]
       },
       {
-        "@id": "urn:aa4b058c-938f-4994-becf-af0bcf8c7fae",
+        "@id": "urn:717e6e9d-b97e-467c-aab3-ae4f15459b31",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:b286b508-ccb9-409b-aa7d-5629f06e613e",
+        "AssociatedWith": "urn:dbfafcd8-f88e-479d-94c2-8cfba84e19a9",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
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@@ -743,16 +743,16 @@
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+        "@id": "urn:59ad2686-bf03-4c54-ab58-52d3e36e159d",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:f2032de7-5c23-4bfa-beed-57f247f9085c",
+        "GeneratedBy": "urn:1320e946-ac94-4740-9e0c-b6f97ad0d99b",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:ab7f17cd-0d77-4d6b-b16f-d47bd5087083",
+        "@id": "urn:d867fd7f-631d-420b-900e-78f8937f4436",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:8df94599-756d-4d89-a734-7c5ba65cf55d",
+        "@id": "urn:065fd0da-dec5-43b9-89bd-2e28490b2920",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:83be6f1d-ca5b-46a5-910c-502c7c9c7f4b",
+        "GeneratedBy": "urn:3ffb5f05-4a19-4865-b981-909b041426bb",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:04439b69-3f57-4c9b-afde-5c0c0fed4476",
+        "@id": "urn:4f8e64ff-f2e7-4b80-b21d-aab197e3b643",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:1a57c0d5-e75d-45e3-a73b-740bdc8bc395",
+        "GeneratedBy": "urn:10f8b075-1fca-472e-b140-189ba027fbad",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:03a5008d-7e31-4c29-aaf3-9f09303722a0",
+        "@id": "urn:f6388f61-a430-4ddb-8dc8-558e2ef8b0ac",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:161a3857-962d-4563-a6d7-35d5f15a4fef",
+        "GeneratedBy": "urn:d3ee1eb9-ba34-4c1b-be52-8fb9737bcae5",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:7334b08d-2196-4c73-9508-798db305ec24",
+        "@id": "urn:b30a0c58-4263-4d7f-be30-876f71d4d2d0",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:a8472bb9-2ead-43f6-8616-18f9aae4d8e0",
+        "GeneratedBy": "urn:29e1c19f-538c-4342-9e76-a6866ccd580f",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:d593231d-fe98-4ccc-91ca-b9c788b6ef1f",
+        "@id": "urn:e255be3b-54f2-4438-a0c3-73a0866a113e",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:aa4b058c-938f-4994-becf-af0bcf8c7fae",
+        "GeneratedBy": "urn:717e6e9d-b97e-467c-aab3-ae4f15459b31",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:7f1ffc33-b986-4e8d-82ac-ca0910a48c07",
+        "@id": "urn:51597196-e9da-4265-8d9f-85e8e2c7d6cb",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:67bce90a-96fc-4630-af47-a3d3b1d601c6",
+        "@id": "urn:e1e59516-0eed-4c3c-84d8-68271d7d9ac8",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:2034611a-b421-4b03-95c2-2bc31bf78150",
+        "GeneratedBy": "urn:92706503-83a5-42fd-b68e-7dba8a30c693",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_bi_sided_t_test_proc_bloc.jsonld b/examples/from_parsers/afni/afni_bi_sided_t_test_proc_bloc.jsonld
index b82b3c0d1..543a0ca70 100644
--- a/examples/from_parsers/afni/afni_bi_sided_t_test_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_bi_sided_t_test_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "@id": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:dee38932-e432-45ac-9034-ec463c0c71d4",
+        "@id": "urn:1d965db1-c424-4236-9d86-cd4a7939aad7",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_bi_sided_t_test/tone_counting_onset_times.txt ./afni_bi_sided_t_test/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:afb058d8-a0d9-4a8d-b48d-43355fd27409",
-          "urn:a7871818-b367-42d5-bd3f-09f84ad1a865",
-          "urn:1e2964dc-2c07-4f9d-9101-885636e34941"
+          "urn:9b7413de-84c5-4192-89bf-80266e1ab5ee",
+          "urn:e9ee1116-9225-47b0-8405-d050722eeb4e",
+          "urn:b10473eb-5f57-4126-b12a-75a8302c7d6c"
         ]
       },
       {
-        "@id": "urn:6c7c5ceb-8f8a-4126-931f-3e45b2fc80f0",
+        "@id": "urn:e4b557f4-93fa-4d8c-8650-78fd658a67b5",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:474c0746-c8da-4cd7-a3c0-eee7a2302b9b"
+          "urn:48b63383-ce45-404f-bda1-96168e337b80"
         ]
       },
       {
-        "@id": "urn:f653dfb6-d7f8-4895-8e06-573f04121f8c",
+        "@id": "urn:2ed3ab6c-8c7d-421f-b06f-a8f6fc205cab",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:d1bcc4df-5ecd-4121-ac75-7a0a03bbdb6b",
-          "urn:5efcc7da-6ea6-4ad7-865b-000b7cafae19"
+          "urn:70f2b950-1da8-47bd-9a74-7baa69660fbe",
+          "urn:5cef23cf-7cd9-4210-990e-6e91f48dbd73"
         ]
       },
       {
-        "@id": "urn:50551edf-7b41-4868-96c8-6f50ef1afcc5",
+        "@id": "urn:9f4bb0cf-d032-467e-ba07-b8a64af8e023",
         "Label": "tshift",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:d1bcc4df-5ecd-4121-ac75-7a0a03bbdb6b"
+          "urn:70f2b950-1da8-47bd-9a74-7baa69660fbe"
         ]
       },
       {
-        "@id": "urn:bc4ed7c6-6801-4fc5-8242-4cca359734a6",
+        "@id": "urn:ccc86f3b-621d-42b8-9fa0-b8df15f2fc1f",
         "Label": "align",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:6bb66fa0-b3ba-478f-9b36-be86363bfe1c",
-          "urn:391cd034-fd83-462d-bba5-f6c952efe934"
+          "urn:ab106e53-c496-4951-ad6d-145f6d4d938a",
+          "urn:b87ce270-a7b7-4db0-b9ea-1be043aad9f5"
         ]
       },
       {
-        "@id": "urn:abaf539c-8c53-4d5b-81dd-c5c8dd66cef5",
+        "@id": "urn:d01f6cb7-895c-4263-9c4f-66641a6521d4",
         "Label": "tlrc",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:66f27953-4be4-4fc2-9e73-7c52bce16dba",
-          "urn:0a8ced20-51bf-4c17-9698-3877f708ece6",
-          "urn:8101dccd-721c-473d-bce4-f9d73ef4f7c2"
+          "urn:7acc757f-48c5-4675-a39b-3733beca8099",
+          "urn:d6a584e7-0498-400e-8978-13fa03639d6d",
+          "urn:52c1a8e5-c14b-48df-8a80-29367b081e4e"
         ]
       },
       {
-        "@id": "urn:ca4ee33e-ec88-4ec0-9662-9065d7cc4734",
+        "@id": "urn:6bf1c686-4bf2-4b26-8333-472d5735d202",
         "Label": "volreg",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:cfef7577-e215-4909-9add-3d091919ebc5",
-          "urn:cfef7577-e215-4909-9add-3d091919ebc5",
-          "urn:8101dccd-721c-473d-bce4-f9d73ef4f7c2",
-          "urn:94043e97-e422-407b-ac11-e740fdb6bf72",
-          "urn:cfef7577-e215-4909-9add-3d091919ebc5",
-          "urn:94043e97-e422-407b-ac11-e740fdb6bf72",
-          "urn:31e7bca8-5b2c-48d3-bb73-49fad30c957b",
-          "urn:94daf206-c9e2-45d9-95d0-6be1bbff9cc5",
-          "urn:d2ff1ab8-8bdb-47f4-bbb9-d8ddb4db7594",
-          "urn:40e504b7-9af3-4669-80fe-a386c5dd1bca",
-          "urn:0f38703c-db4b-40a0-aec6-8c82cfea4b58",
-          "urn:725ce964-546e-4bc3-b142-d8c544ff20fb",
-          "urn:94043e97-e422-407b-ac11-e740fdb6bf72",
-          "urn:7e3371bd-9b56-435d-b2af-b036ba2d16ea"
+          "urn:aab7e482-df3a-4613-8609-1527e33b0cfa",
+          "urn:aab7e482-df3a-4613-8609-1527e33b0cfa",
+          "urn:52c1a8e5-c14b-48df-8a80-29367b081e4e",
+          "urn:aab7e482-df3a-4613-8609-1527e33b0cfa",
+          "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9",
+          "urn:806d8de7-23c7-46e1-b393-3d7fa8d97c2e",
+          "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9",
+          "urn:400dfff1-82aa-4fc8-9730-33f12fb8c935",
+          "urn:aab53304-9b12-437b-806d-49e31efb24d7",
+          "urn:bca7fdff-cf83-4ed5-86ca-ce6de993d731",
+          "urn:9f28f0a1-da7e-4f27-9c55-3e2ac9572dc0",
+          "urn:f6e52004-da13-4dda-b778-6622f666c503",
+          "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9",
+          "urn:3b4e7ef1-b31c-4fb3-ae81-90f628678f4b"
         ]
       },
       {
-        "@id": "urn:af09e210-3d42-4ab8-881e-63b8a79ac26f",
+        "@id": "urn:33370220-43b1-4281-b4eb-e06e198ee679",
         "Label": "blur",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:582ba438-47f5-434f-a321-cfe55992160a",
-          "urn:9236d668-8f3d-447a-998e-8640df11727d"
+          "urn:2753b48f-12fa-40fc-a095-c4707b8dd571",
+          "urn:881e6701-d5f6-4e1d-8b08-b0f422bfc7f7"
         ]
       },
       {
-        "@id": "urn:f6360992-6c3c-4790-874c-7469907d535a",
+        "@id": "urn:a1ae76b6-98c6-405b-aadb-5898c973ad78",
         "Label": "mask",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:d26db05c-46bd-486f-ac18-7657421e4fc8",
-          "urn:94043e97-e422-407b-ac11-e740fdb6bf72",
-          "urn:460f0b95-3f6c-4c96-81a3-ddc96e1ec5d5",
-          "urn:45ccc0d7-d6a4-4e62-9efe-15b59b96354c",
-          "urn:e41da089-c6ef-43e2-aad8-f66b342a8d5b",
-          "urn:1565ab85-75cd-4a8f-8e85-fab31c94aaf1",
-          "urn:e41da089-c6ef-43e2-aad8-f66b342a8d5b",
-          "urn:1565ab85-75cd-4a8f-8e85-fab31c94aaf1",
-          "urn:3fbe504a-202b-4491-8efe-002357a202be",
-          "urn:460f0b95-3f6c-4c96-81a3-ddc96e1ec5d5",
-          "urn:b04e3534-b117-43c7-8bf5-b03ee2753090"
+          "urn:d751aff5-d3ee-485c-be17-647730723212",
+          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
+          "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9",
+          "urn:5c7cbc9b-48c8-44b8-8f20-4487d457e76b",
+          "urn:6aaedc63-f21c-4f7b-81ae-55afae124789",
+          "urn:ffee68b2-1ae4-4e18-b7c4-8b3ea7e3669d",
+          "urn:6aaedc63-f21c-4f7b-81ae-55afae124789",
+          "urn:ffee68b2-1ae4-4e18-b7c4-8b3ea7e3669d",
+          "urn:0a875af3-87ed-447a-b565-fb7896612717",
+          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
+          "urn:5fc905ed-edca-44b6-ae43-65c143fb6ce5"
         ]
       },
       {
-        "@id": "urn:fff5c382-53bd-4b97-a58a-1fe3dbded5df",
+        "@id": "urn:7ec5b7a4-7374-4686-b27c-81a58c3b3e98",
         "Label": "scale",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:d26db05c-46bd-486f-ac18-7657421e4fc8",
-          "urn:d26db05c-46bd-486f-ac18-7657421e4fc8",
-          "urn:9298f076-ad34-43e2-aa3b-7864511f07e8",
-          "urn:725ce964-546e-4bc3-b142-d8c544ff20fb"
+          "urn:d751aff5-d3ee-485c-be17-647730723212",
+          "urn:d751aff5-d3ee-485c-be17-647730723212",
+          "urn:e4fff7da-26ea-4221-bc58-8c8d6b7ca84f",
+          "urn:f6e52004-da13-4dda-b778-6622f666c503"
         ]
       },
       {
-        "@id": "urn:11801d7e-8459-47fd-bfb3-024e9bf5501d",
+        "@id": "urn:8f10d30f-de71-4768-a788-1ab96c863c20",
         "Label": "regress",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:4e66afad-85bf-424d-aedf-ebb495b51d76",
-          "urn:4e66afad-85bf-424d-aedf-ebb495b51d76",
-          "urn:4e66afad-85bf-424d-aedf-ebb495b51d76",
-          "urn:e8810ee0-cdb1-4e99-b6da-3277ccc23dd2",
-          "urn:e8810ee0-cdb1-4e99-b6da-3277ccc23dd2",
-          "urn:f9a25879-924c-40ca-beed-fd6bdae25812",
-          "urn:9a46fc84-5d80-45d6-beb8-5860b5ed50c5",
-          "urn:435a68ac-72e9-4d77-8ee2-9eb12b1468c4",
-          "urn:551995e2-978b-482d-afd6-fe48b36f14c7",
-          "urn:460f0b95-3f6c-4c96-81a3-ddc96e1ec5d5",
-          "urn:1610add2-fdc2-479b-a927-1c15cee8cf73",
-          "urn:d4ce1155-8e92-41de-ad87-a61a257d6e3f",
-          "urn:0d0dc84d-f553-4433-a38d-2c1056077f45",
-          "urn:a5a99aec-f69e-4cea-b407-27243deea155",
-          "urn:eb840ac1-a07c-458f-bc27-72a72f9c3be1",
-          "urn:96707788-783b-4a32-88cc-425b7e5cc0a2",
-          "urn:af85eb98-f60a-48ca-85fc-72ebed7a0c95",
-          "urn:af85eb98-f60a-48ca-85fc-72ebed7a0c95"
+          "urn:9eed3a2e-d164-447c-b3bc-d21d5bef7b7e",
+          "urn:9eed3a2e-d164-447c-b3bc-d21d5bef7b7e",
+          "urn:9eed3a2e-d164-447c-b3bc-d21d5bef7b7e",
+          "urn:c00db8db-eb32-474f-9295-5d4577ab7c7d",
+          "urn:c00db8db-eb32-474f-9295-5d4577ab7c7d",
+          "urn:e87352cf-8f22-4cbb-8087-9676bac3f385",
+          "urn:2eab2af1-766c-40ab-bc73-07fe63cd5afa",
+          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
+          "urn:91fa6de6-3f29-454c-844f-7ac0acea8093",
+          "urn:eea4fd33-05eb-45c5-b022-11c629c9ab6f",
+          "urn:7bcd13f8-15cf-4d96-ad31-3adc7d5d4ac5",
+          "urn:42fd9295-622f-45a3-989a-5d0236370afe",
+          "urn:0ff95592-e05d-4465-84d2-4755ce6e3121",
+          "urn:1b733724-c865-41c8-a4b3-89ec4e7bf1b6",
+          "urn:223988f1-fdfc-4dfa-b192-f52e6e3df12f",
+          "urn:2b0afdd2-8abd-4f81-8748-cecd12c9987f",
+          "urn:b3fa8179-1978-4507-901d-c57dcd4f10d4",
+          "urn:b3fa8179-1978-4507-901d-c57dcd4f10d4"
         ]
       },
       {
-        "@id": "urn:544d0fc1-89f3-4a63-b15c-b845ef1a2a66",
+        "@id": "urn:696bea66-9b1b-47a7-9d50-4fc276f012d7",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:460f0b95-3f6c-4c96-81a3-ddc96e1ec5d5",
-          "urn:460f0b95-3f6c-4c96-81a3-ddc96e1ec5d5",
-          "urn:460f0b95-3f6c-4c96-81a3-ddc96e1ec5d5"
+          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
+          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
+          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024"
         ]
       },
       {
-        "@id": "urn:c99ec4d0-f9ca-4425-b9f4-c87db03772be",
+        "@id": "urn:38c05196-6be2-4e4e-a4f1-0ec7328be2dd",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:7c904fe8-31f3-4167-81af-55c5598a361f",
+        "AssociatedWith": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:854a0da7-0140-4007-b23a-63c8036c2338"
+          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:afb058d8-a0d9-4a8d-b48d-43355fd27409",
+        "@id": "urn:e9ee1116-9225-47b0-8405-d050722eeb4e",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_bi_sided_t_test/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:a7871818-b367-42d5-bd3f-09f84ad1a865",
+        "@id": "urn:9b7413de-84c5-4192-89bf-80266e1ab5ee",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_bi_sided_t_test/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:1e2964dc-2c07-4f9d-9101-885636e34941",
+        "@id": "urn:b10473eb-5f57-4126-b12a-75a8302c7d6c",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:e6b2a50a-4dcf-45b7-846e-7c217cb5732e",
+        "@id": "urn:eefd5f21-3c8d-40a0-bac6-7edd58d696ea",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:dee38932-e432-45ac-9034-ec463c0c71d4",
+        "GeneratedBy": "urn:1d965db1-c424-4236-9d86-cd4a7939aad7",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:91b05bcc-7a2e-48cf-953c-a366b3419200",
+        "@id": "urn:73ab640b-ef65-4907-abc4-6d68bf3b2bf8",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:dee38932-e432-45ac-9034-ec463c0c71d4"
+        "GeneratedBy": "urn:1d965db1-c424-4236-9d86-cd4a7939aad7"
       },
       {
-        "@id": "urn:bdcd7490-2898-4e26-bee3-83ff2fbc28ca",
+        "@id": "urn:839c0971-255e-4c75-9e1a-542046cca671",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:dee38932-e432-45ac-9034-ec463c0c71d4"
+        "GeneratedBy": "urn:1d965db1-c424-4236-9d86-cd4a7939aad7"
       },
       {
-        "@id": "urn:642b00c2-5f79-420a-a212-45cdd7dcba33",
+        "@id": "urn:6cdc1962-95fb-4726-8f99-e6a217f57a15",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:dee38932-e432-45ac-9034-ec463c0c71d4"
+        "GeneratedBy": "urn:1d965db1-c424-4236-9d86-cd4a7939aad7"
       },
       {
-        "@id": "urn:474c0746-c8da-4cd7-a3c0-eee7a2302b9b",
+        "@id": "urn:48b63383-ce45-404f-bda1-96168e337b80",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:b32e0ecb-8082-4086-9d2a-384403f51379",
+        "@id": "urn:0af45bce-46c7-418d-90aa-c60de084ad56",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:6c7c5ceb-8f8a-4126-931f-3e45b2fc80f0"
+        "GeneratedBy": "urn:e4b557f4-93fa-4d8c-8650-78fd658a67b5"
       },
       {
-        "@id": "urn:d1bcc4df-5ecd-4121-ac75-7a0a03bbdb6b",
+        "@id": "urn:70f2b950-1da8-47bd-9a74-7baa69660fbe",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:5efcc7da-6ea6-4ad7-865b-000b7cafae19",
+        "@id": "urn:5cef23cf-7cd9-4210-990e-6e91f48dbd73",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:9e0c1369-436f-4b6c-8dce-13e7c886d3be",
+        "@id": "urn:23a1709c-98bd-4406-a568-7599a5950947",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:f653dfb6-d7f8-4895-8e06-573f04121f8c",
+        "GeneratedBy": "urn:2ed3ab6c-8c7d-421f-b06f-a8f6fc205cab",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:d01b0a86-c597-4ff2-902e-b02ef0af2f5e",
+        "@id": "urn:34578183-176c-415f-b749-50fa24842adb",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:f653dfb6-d7f8-4895-8e06-573f04121f8c",
+        "GeneratedBy": "urn:2ed3ab6c-8c7d-421f-b06f-a8f6fc205cab",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:d1bcc4df-5ecd-4121-ac75-7a0a03bbdb6b",
+        "@id": "urn:70f2b950-1da8-47bd-9a74-7baa69660fbe",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:0514ce80-6ce1-44f3-9482-53f6381f5b61",
+        "@id": "urn:98e35494-b413-4218-b09a-4736ca2f5580",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:50551edf-7b41-4868-96c8-6f50ef1afcc5",
+        "GeneratedBy": "urn:9f4bb0cf-d032-467e-ba07-b8a64af8e023",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:6bb66fa0-b3ba-478f-9b36-be86363bfe1c",
+        "@id": "urn:ab106e53-c496-4951-ad6d-145f6d4d938a",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:391cd034-fd83-462d-bba5-f6c952efe934",
+        "@id": "urn:b87ce270-a7b7-4db0-b9ea-1be043aad9f5",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:a565191b-1db3-4743-bd31-6b8b2cbf88c2",
+        "@id": "urn:aca5ea51-558c-4d26-b3e4-687a77410260",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:bc4ed7c6-6801-4fc5-8242-4cca359734a6",
+        "GeneratedBy": "urn:ccc86f3b-621d-42b8-9fa0-b8df15f2fc1f",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
       },
       {
-        "@id": "urn:66f27953-4be4-4fc2-9e73-7c52bce16dba",
+        "@id": "urn:7acc757f-48c5-4675-a39b-3733beca8099",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -333,7 +333,7 @@
         }
       },
       {
-        "@id": "urn:0a8ced20-51bf-4c17-9698-3877f708ece6",
+        "@id": "urn:d6a584e7-0498-400e-8978-13fa03639d6d",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -341,7 +341,7 @@
         }
       },
       {
-        "@id": "urn:8101dccd-721c-473d-bce4-f9d73ef4f7c2",
+        "@id": "urn:52c1a8e5-c14b-48df-8a80-29367b081e4e",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -349,16 +349,16 @@
         }
       },
       {
-        "@id": "urn:7e3371bd-9b56-435d-b2af-b036ba2d16ea",
+        "@id": "urn:3b4e7ef1-b31c-4fb3-ae81-90f628678f4b",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:abaf539c-8c53-4d5b-81dd-c5c8dd66cef5",
+        "GeneratedBy": "urn:d01f6cb7-895c-4263-9c4f-66641a6521d4",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:8101dccd-721c-473d-bce4-f9d73ef4f7c2",
+        "@id": "urn:52c1a8e5-c14b-48df-8a80-29367b081e4e",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -366,16 +366,16 @@
         }
       },
       {
-        "@id": "urn:7e3371bd-9b56-435d-b2af-b036ba2d16ea",
+        "@id": "urn:3b4e7ef1-b31c-4fb3-ae81-90f628678f4b",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:abaf539c-8c53-4d5b-81dd-c5c8dd66cef5",
+        "GeneratedBy": "urn:d01f6cb7-895c-4263-9c4f-66641a6521d4",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:cfef7577-e215-4909-9add-3d091919ebc5",
+        "@id": "urn:aab7e482-df3a-4613-8609-1527e33b0cfa",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -383,7 +383,7 @@
         }
       },
       {
-        "@id": "urn:94043e97-e422-407b-ac11-e740fdb6bf72",
+        "@id": "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -391,7 +391,7 @@
         }
       },
       {
-        "@id": "urn:31e7bca8-5b2c-48d3-bb73-49fad30c957b",
+        "@id": "urn:806d8de7-23c7-46e1-b393-3d7fa8d97c2e",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -399,7 +399,7 @@
         }
       },
       {
-        "@id": "urn:94daf206-c9e2-45d9-95d0-6be1bbff9cc5",
+        "@id": "urn:400dfff1-82aa-4fc8-9730-33f12fb8c935",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run+tlrc",
         "digest": {
@@ -407,7 +407,7 @@
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@@ -794,7 +794,7 @@
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@@ -802,7 +802,7 @@
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@@ -810,7 +810,7 @@
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@@ -818,133 +818,133 @@
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@@ -952,34 +952,34 @@
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@@ -987,10 +987,10 @@
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diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc.jsonld b/examples/from_parsers/afni/afni_clustconn_18_proc.jsonld
index cdd9b3fae..2225617eb 100644
--- a/examples/from_parsers/afni/afni_clustconn_18_proc.jsonld
+++ b/examples/from_parsers/afni/afni_clustconn_18_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
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       {
-        "@id": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "@id": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "RRID": "RRID:SCR_007037",
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@@ -13,569 +13,569 @@
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-        "@id": "urn:4e8380f4-779e-4fb0-8055-3853d04e3c3e",
+        "@id": "urn:c3fef51d-5762-42e0-b208-60c41cb88f9e",
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-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
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         "Used": []
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       {
-        "@id": "urn:68d316be-cf42-4d78-9f7d-d2c54c8c323a",
+        "@id": "urn:8b592887-7f42-4141-995d-d6d0ce67d10a",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:477c3f5e-630b-4bfb-a468-dfd83634e24e",
-          "urn:7a1258f4-3dc6-40f8-b541-8464d09441f4"
+          "urn:559ab88d-a226-41c0-aee7-6b3c5cfbe790",
+          "urn:8e023450-0935-49bf-8dd0-7bb4196fbdf4"
         ]
       },
       {
-        "@id": "urn:9c90f726-f9f1-4ca9-95d3-e45d9bacb1a6",
+        "@id": "urn:6cfef149-6cf9-489a-b7d2-fb11d514c35a",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:5220bf84-809b-43c7-a990-4420937d440c"
+          "urn:5ba2fd1c-e80f-42b6-8553-5bb99fd8c06a"
         ]
       },
       {
-        "@id": "urn:01e79021-0f0d-4aba-a1f4-369ffb7cc201",
+        "@id": "urn:00125f77-6342-48bb-963c-4dae68613589",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:66eaa3e1-c9e6-4028-b12e-20f937aeb6ce"
+          "urn:323dfd98-0e23-4cd6-bca7-da37bd766307"
         ]
       },
       {
-        "@id": "urn:5fcebb2a-561a-4a82-9ba8-c34a70dca3de",
+        "@id": "urn:37a9d9ad-1722-4d7b-a9fd-2cd6c084801b",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:66eaa3e1-c9e6-4028-b12e-20f937aeb6ce"
+          "urn:323dfd98-0e23-4cd6-bca7-da37bd766307"
         ]
       },
       {
-        "@id": "urn:a98b230c-9f2c-4f77-b0ef-6c23ce4b84a1",
+        "@id": "urn:b3d8f618-85a4-422f-8deb-58d93c99b3c6",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:5220bf84-809b-43c7-a990-4420937d440c"
+          "urn:5ba2fd1c-e80f-42b6-8553-5bb99fd8c06a"
         ]
       },
       {
-        "@id": "urn:e5ba4dd7-5b17-4194-a1c9-264e76957414",
+        "@id": "urn:e5200db4-26eb-4575-bc6d-d3297eadb4f1",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:41a4842c-bbcd-45d1-a868-abf5bf26f803",
-          "urn:66eaa3e1-c9e6-4028-b12e-20f937aeb6ce",
-          "urn:21147da6-e390-48d1-8321-2479da448fd0"
+          "urn:323dfd98-0e23-4cd6-bca7-da37bd766307",
+          "urn:5bb841a2-ccbb-4a7a-8b72-a203131c444e",
+          "urn:5e9bf653-542a-4ed6-96a4-f8edeb95cda8"
         ]
       },
       {
-        "@id": "urn:7e7a0226-40f9-4b01-9559-85588b3e1637",
+        "@id": "urn:940a024f-3e2f-4682-85f1-a12ff1028ab6",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:41a4842c-bbcd-45d1-a868-abf5bf26f803",
-          "urn:b4484d59-8f63-48ca-b656-1e0d043752b2",
-          "urn:21147da6-e390-48d1-8321-2479da448fd0"
+          "urn:57bd0bcd-f9d4-4f7e-98b1-b2439a0d7c98",
+          "urn:5bb841a2-ccbb-4a7a-8b72-a203131c444e",
+          "urn:5e9bf653-542a-4ed6-96a4-f8edeb95cda8"
         ]
       },
       {
-        "@id": "urn:c503a0a4-664f-4750-a901-73b7820becbe",
+        "@id": "urn:189beb08-e9a2-4516-9240-a715584e0031",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:6e74cc21-a8a0-4cfd-8d1a-dc6800a91871"
+          "urn:bfc775c7-b23c-4f34-a471-608d47d69d7e"
         ]
       },
       {
-        "@id": "urn:23b47ba8-6c77-47fa-8455-53b53de084b8",
+        "@id": "urn:91c12036-fc30-427f-aa13-e71430011001",
         "Label": "cat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:64015bb5-9e07-47b4-bcb5-be435bae2dfe"
+          "urn:ff2a2443-83b2-4529-a30f-d2d858c75ea9"
         ]
       },
       {
-        "@id": "urn:a527cfca-63f6-4674-b6e7-c63704924e3e",
+        "@id": "urn:e4185d45-0bcd-48f6-91a2-839587f71001",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:6ff9de7c-6cda-4e3a-b954-3f47e4155ef0"
+          "urn:e750f6bc-d97a-4a51-ac11-ae1720f99d12"
         ]
       },
       {
-        "@id": "urn:79450e3a-2794-4024-9b76-79a103d2b7d3",
+        "@id": "urn:5023c995-0b5c-4c5d-8e82-318ef6c185f8",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:9f53cc03-f2b2-4da6-a513-ed9fcea5e192",
-          "urn:bbfa134b-682f-48e7-b299-9bec9bb3e53d"
+          "urn:2bd63b48-4475-4f80-9b48-bceab9a6454c",
+          "urn:cd671cbd-c42d-4719-81c8-0a9e3e044d7b"
         ]
       },
       {
-        "@id": "urn:4e78aec3-0449-4957-9b2e-e2670d3c8eac",
+        "@id": "urn:4a8f29c1-4ba1-4ea3-a128-eccc5bc20519",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:41a4842c-bbcd-45d1-a868-abf5bf26f803"
+          "urn:5e9bf653-542a-4ed6-96a4-f8edeb95cda8"
         ]
       },
       {
-        "@id": "urn:aedc8b00-31dc-4c2f-abe2-83b372cc9ea1",
+        "@id": "urn:7446de50-5f1d-49d2-bbe6-26e5cecd4100",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:d1d46083-8e1b-4799-9e60-000ed0d76566"
+          "urn:b979651c-e069-41c3-9435-6a7efa49c0f1"
         ]
       },
       {
-        "@id": "urn:6c861a68-7277-43c4-9682-d741d63b9902",
+        "@id": "urn:fd337a81-c20c-4ebe-85a4-29f828dcba40",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:0427e75d-9b77-49c7-9115-8a027e268d8b",
-          "urn:ee0df403-8091-493a-b120-c6fa437af003"
+          "urn:85df3309-7274-417c-818b-db0e65a74b46",
+          "urn:a3127220-c9fb-4c52-99d6-9a7bfb95a855"
         ]
       },
       {
-        "@id": "urn:8326db28-1de0-4a26-9653-452d37245fe9",
+        "@id": "urn:11aca076-ca97-4e8f-8c73-205ea9d1bd0a",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:6a705153-a8ec-4f05-afbe-482a9a6572f0"
+          "urn:bd3cda7f-ebb1-4668-8946-9c8ecc7be163"
         ]
       },
       {
-        "@id": "urn:b40d89a3-83ce-4681-8b2a-1ede9a222290",
+        "@id": "urn:7ae1bda0-f7e4-4f14-a7f4-a922b1efd5eb",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:201bde68-fae3-411d-99f2-ab42384c8338",
+        "@id": "urn:301eb051-62cc-44d8-a38f-abdeb3a57511",
         "Label": "3dresample",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:41a4842c-bbcd-45d1-a868-abf5bf26f803",
-          "urn:28c9680c-6c45-4391-9154-52d690f684a3"
+          "urn:5e9bf653-542a-4ed6-96a4-f8edeb95cda8",
+          "urn:83d9775b-d095-4fa1-9c97-3eb1ccbcc82c"
         ]
       },
       {
-        "@id": "urn:36e42222-a6e3-40af-a6c3-5f2f86e5a72e",
+        "@id": "urn:5b04f058-84b0-4900-86d8-ba5bda1ed793",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:4730663e-8b30-4c67-a4ee-83156b001a52"
+          "urn:9dcd837c-b805-482e-ada6-bc351c6279b5"
         ]
       },
       {
-        "@id": "urn:d12b9151-bf9f-4490-bfb4-7f6435411e7b",
+        "@id": "urn:d235363a-c2f2-4f62-9687-c7df80999bb0",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:7c1d55a1-c2e9-4c65-bd52-5ac594954a52",
-          "urn:939d985b-3327-45e2-9337-26885d6173ca"
+          "urn:693a8ebf-4876-42b8-b3e6-39bc58fb9175",
+          "urn:db08eb96-49ca-4fa9-bfb8-b3dc3e4c4f79"
         ]
       },
       {
-        "@id": "urn:e0dac46e-eafd-476d-8b91-3f6b636fe7a0",
+        "@id": "urn:0fd3b96b-ed78-45b9-aaf3-91d34f33e91b",
         "Label": "3ddot",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:7c1d55a1-c2e9-4c65-bd52-5ac594954a52",
-          "urn:939d985b-3327-45e2-9337-26885d6173ca"
+          "urn:693a8ebf-4876-42b8-b3e6-39bc58fb9175",
+          "urn:db08eb96-49ca-4fa9-bfb8-b3dc3e4c4f79"
         ]
       },
       {
-        "@id": "urn:4771e140-336c-4b07-a440-c46f2046a8af",
+        "@id": "urn:72d6dd2f-3315-4dc9-90e9-175008e98179",
         "Label": "3dresample",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:56b09b0f-cdba-4b84-b085-0267c989a38e",
-          "urn:28c9680c-6c45-4391-9154-52d690f684a3"
+          "urn:83d9775b-d095-4fa1-9c97-3eb1ccbcc82c",
+          "urn:929a3f98-4314-480f-b888-01bdcf215560"
         ]
       },
       {
-        "@id": "urn:63a271a5-57e5-417a-b04b-29e1ad28a9e9",
+        "@id": "urn:f2e84dd6-35d9-45be-bd69-95e73d210f05",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:e3c6af3f-6b0b-45c1-b107-31bb8e547a31"
+          "urn:b377a62c-0136-42c9-bc3b-33bf283478b4"
         ]
       },
       {
-        "@id": "urn:83dc265e-1d33-4f20-835a-26123ffcdb41",
+        "@id": "urn:a31aaad2-d520-4981-96e1-11371b1fc426",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:6a705153-a8ec-4f05-afbe-482a9a6572f0"
+          "urn:bd3cda7f-ebb1-4668-8946-9c8ecc7be163"
         ]
       },
       {
-        "@id": "urn:1b86e07e-4d2d-47f8-8412-c0ada2666eac",
+        "@id": "urn:4fd31fdf-5476-4077-ba9e-36bbeef52970",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:6a705153-a8ec-4f05-afbe-482a9a6572f0",
-          "urn:4c2392bd-7cc9-43cf-8dd1-802e0e2ad902",
-          "urn:bbfa134b-682f-48e7-b299-9bec9bb3e53d"
+          "urn:bd3cda7f-ebb1-4668-8946-9c8ecc7be163",
+          "urn:bfdaeecc-9a20-4732-acf7-ebc9e8c2d4c1",
+          "urn:cd671cbd-c42d-4719-81c8-0a9e3e044d7b"
         ]
       },
       {
-        "@id": "urn:e294213a-d7da-4e5a-9dd7-95e1c68790a6",
+        "@id": "urn:b4dbacf5-4b0e-469b-90b1-49e7d3a155cd",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:439bbc5f-eb5d-4f49-a9e8-c699f6978b17"
+          "urn:f083169d-392f-4543-a4f8-a09c7293f427"
         ]
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       {
-        "@id": "urn:57953d81-a7b2-4224-bb0e-cac27937eb14",
+        "@id": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:439bbc5f-eb5d-4f49-a9e8-c699f6978b17"
+          "urn:f083169d-392f-4543-a4f8-a09c7293f427"
         ]
       },
       {
-        "@id": "urn:661c86b2-88d7-426e-9aa9-376244954f95",
+        "@id": "urn:965a2ebc-918d-4d0d-b318-6856a499fe16",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:439bbc5f-eb5d-4f49-a9e8-c699f6978b17"
+          "urn:f083169d-392f-4543-a4f8-a09c7293f427"
         ]
       },
       {
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+        "@id": "urn:196eab7a-3e2b-410e-a4c3-89f706ae8db3",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:904e7ac6-c1d8-4ec1-91fa-7b5929e586ec"
+          "urn:93adf029-3670-4112-a2a2-66bb7b20a01a"
         ]
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       {
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+        "@id": "urn:0c860fc3-fbed-464c-a458-8e2221e88652",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:841794c3-0ff8-48c8-8f7b-7edfc2855a6a"
+          "urn:bc1d54d7-90b4-444e-8ad4-93948efd48fd"
         ]
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       {
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         "Label": "3dTcat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
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+          "urn:93adf029-3670-4112-a2a2-66bb7b20a01a"
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       {
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+        "@id": "urn:b5ef5827-8b9c-420a-ba5d-ff074a4816e4",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:c73f2b10-f168-462e-96b1-be4642f13a2b"
+          "urn:2c2a2a5f-12d9-443d-8307-038476e05738"
         ]
       },
       {
-        "@id": "urn:76fa35f3-995e-4dfe-afff-9eabac5446d1",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:515d31a9-a71f-4314-a388-3019210c45b3"
+          "urn:c32b3dea-3bb5-460f-836b-f0d37c0c92f4"
         ]
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       {
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+        "@id": "urn:bcca5728-ee7a-4910-b04e-4afe1f0100d4",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
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-          "urn:6df90f99-98f9-4193-9958-e48e3af720e1",
-          "urn:28c9680c-6c45-4391-9154-52d690f684a3"
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         ]
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       {
-        "@id": "urn:3107161d-fd2d-44e4-b50f-11fde8e7fd46",
+        "@id": "urn:dd59d2c2-9e43-4dac-b1d2-71a3db038952",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:a5c3032a-5e00-4f6c-8ab2-ebf4dfe8c790"
+          "urn:df8b62e7-fee0-43de-bb45-e25ae1a262f2"
         ]
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       {
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         "Label": "3dmaskave",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:ba418f67-f5db-4dc1-b1e2-91b336931fdf",
+        "@id": "urn:b000ce49-ee34-4b4a-a104-841943e9bc11",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:248db2f9-8d20-4233-bfdf-d8d9b29551bb"
+          "urn:c49d5a06-0a28-4dff-8d3f-b322c4f36291"
         ]
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       {
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+        "@id": "urn:fac26c4d-38f9-49b0-9faf-062fe892a8ff",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
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-          "urn:d1910e3d-571c-4a0a-8b04-922051d2f700"
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:f731f008-2aec-4366-8549-b78118c71d5c"
+          "urn:c153fb7f-09ea-4050-a6df-7fb63bcfa826"
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         "Label": "1dcat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
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+          "urn:69ce85f3-e1c3-45a4-9eea-f36fac8b7522"
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         "Label": "1dcat",
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+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:d479a642-5dc1-4d5b-8652-51477e4994d5"
+          "urn:9f51d912-394a-4bb7-8858-1674aed5be7c"
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+        "@id": "urn:0255aa2c-31b4-488c-97f8-7e4e7a35295e",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:05da50da-4c38-490d-939e-2529d5338e2b"
+          "urn:5c3a9cf4-7f25-47ac-a792-27f8c421ff6d"
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         "Label": "1dcat",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:05da50da-4c38-490d-939e-2529d5338e2b"
+          "urn:5c3a9cf4-7f25-47ac-a792-27f8c421ff6d"
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+        "@id": "urn:48c32de6-d8cc-4932-9033-005392de7601",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:28c9680c-6c45-4391-9154-52d690f684a3"
+          "urn:83d9775b-d095-4fa1-9c97-3eb1ccbcc82c"
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-        "@id": "urn:6ec748e7-4e38-471c-a82a-e38f5e25f410",
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         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:28c9680c-6c45-4391-9154-52d690f684a3"
+          "urn:83d9775b-d095-4fa1-9c97-3eb1ccbcc82c"
         ]
       },
       {
-        "@id": "urn:3d560307-6ffe-4317-af03-e94130359c0d",
+        "@id": "urn:a0e4adbb-6344-4a60-991e-336d5f663b71",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:28c9680c-6c45-4391-9154-52d690f684a3"
+          "urn:83d9775b-d095-4fa1-9c97-3eb1ccbcc82c"
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       {
-        "@id": "urn:5352d93c-8554-4dd8-b154-4c8a7732ed7b",
+        "@id": "urn:2d9ff369-4529-4847-81b1-9444562e5d64",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:b722df9c-540e-49b2-bf8a-2581b3fcdb28"
+          "urn:e6787718-533c-4ee0-9c8b-804f603f9942"
         ]
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       {
-        "@id": "urn:a7b6f5de-c2b2-49ed-b1f2-85cc15ba656d",
+        "@id": "urn:33c75be3-aa4e-406c-baeb-c6b0c73dd6e4",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
+        "AssociatedWith": "urn:053445f1-731c-4b12-ad78-83c800e44f52",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
           "-mot_limit": "0.3",
@@ -586,22 +586,22 @@
     ],
     "Entities": [
       {
-        "@id": "urn:ae363fa1-5463-438c-952a-f4e2a0dfef11",
+        "@id": "urn:e263f16e-cedc-4489-bc9a-a3b69f9a926e",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:4e8380f4-779e-4fb0-8055-3853d04e3c3e",
+        "GeneratedBy": "urn:c3fef51d-5762-42e0-b208-60c41cb88f9e",
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-        "@id": "urn:6a86f7e6-4e1a-444d-8f14-4617146d3d26",
+        "@id": "urn:7ec370f6-7fa0-4fe6-b172-78531415e913",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:b59e9cce-8a28-4ecc-b68a-079d48cca2b7"
+        "GeneratedBy": "urn:acda275a-b3d5-4117-b8e2-02e26364ba33"
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-        "@id": "urn:5c80367c-60c3-4da6-9dbc-a232cb748064",
+        "@id": "urn:8730a528-9da2-4da2-86d6-74a3e33e67aa",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_cluster_nn2/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
         }
       },
       {
-        "@id": "urn:9b530164-fd75-491c-bbec-69376446ae24",
+        "@id": "urn:ddec23dd-7280-4054-9869-d0c3d53b0adf",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_cluster_nn2/tone_counting_probe_duration.txt",
         "digest": {
@@ -617,13 +617,13 @@
         }
       },
       {
-        "@id": "urn:08d14d34-64e4-4de6-93bf-2be4a4840fca",
+        "@id": "urn:c7b8d196-180d-4429-99a9-be28c989cfc1",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:22d5d091-3520-4934-84b2-b3c4408924f3"
+        "GeneratedBy": "urn:0b2b92bb-d5a0-481b-b286-f5524c5174c7"
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-        "@id": "urn:33b59642-b965-43a4-aca6-470c7a099750",
+        "@id": "urn:da476eb4-c8f5-4aba-b5cd-3b7836110dcc",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -631,13 +631,13 @@
         }
       },
       {
-        "@id": "urn:4c4b965b-fede-4d18-bc71-3e9f05e713ac",
+        "@id": "urn:18029782-11f3-474d-a4b0-03ab12abe0b6",
         "Label": "sub-01_T1w",
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@@ -645,13 +645,13 @@
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@@ -659,16 +659,16 @@
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@@ -676,25 +676,25 @@
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@@ -702,7 +702,7 @@
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@@ -710,16 +710,16 @@
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@@ -727,7 +727,7 @@
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@@ -735,7 +735,7 @@
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@@ -743,16 +743,16 @@
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@@ -760,34 +760,34 @@
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@@ -795,16 +795,16 @@
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@@ -812,16 +812,16 @@
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@@ -829,16 +829,16 @@
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@@ -846,16 +846,16 @@
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@@ -863,16 +863,16 @@
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@@ -880,7 +880,7 @@
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@@ -888,34 +888,34 @@
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@@ -923,7 +923,7 @@
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@@ -931,7 +931,7 @@
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@@ -939,25 +939,25 @@
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@@ -965,16 +965,16 @@
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@@ -982,16 +982,16 @@
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@@ -1342,10 +1342,10 @@
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       },
       {
-        "@id": "urn:c5b5bfe0-8a5e-42a0-a26c-0ca6a1f11bf8",
+        "@id": "urn:7e90b8aa-1787-46fb-88cf-ae5ddc1b0750",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:a7b6f5de-c2b2-49ed-b1f2-85cc15ba656d",
+        "GeneratedBy": "urn:33c75be3-aa4e-406c-baeb-c6b0c73dd6e4",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_clustconn_18_proc_bloc.jsonld b/examples/from_parsers/afni/afni_clustconn_18_proc_bloc.jsonld
index 91bfe52b0..7ca6adb8a 100644
--- a/examples/from_parsers/afni/afni_clustconn_18_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_clustconn_18_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "@id": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:f0df4582-6ede-4262-af8a-21feda9b538b",
+        "@id": "urn:0d4c627b-47f0-41e5-b910-3deee2f35763",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_cluster_nn2/tone_counting_onset_times.txt ./afni_cluster_nn2/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:c9d8e8ff-1d2f-4924-bdfb-7d9994d48c73",
-          "urn:aa80a37f-3f74-4a58-9430-b8cc5642dd3b",
-          "urn:15a47728-78c9-4ccc-8db9-c928c7fc4ae5"
+          "urn:7b77f6cf-4ed2-464a-90d4-623dd12ada75",
+          "urn:f018e574-c168-4881-888c-9219e4b677b5",
+          "urn:57568e78-c209-4703-8379-c145283e032f"
         ]
       },
       {
-        "@id": "urn:bda7c9ed-226a-4b59-a89c-f3d9c8bba4f7",
+        "@id": "urn:989551bd-89f0-41fd-b83d-ff7f03e47600",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:ff50cde1-de86-4145-82b6-32390e1d36da"
+          "urn:e9e3d0aa-9658-40a4-bf47-6c55ada3b932"
         ]
       },
       {
-        "@id": "urn:a08509a8-7e5c-425e-b284-91fba26756e9",
+        "@id": "urn:d58429c6-9e63-4f00-8a81-abaf77c48ec4",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:391b6139-ccc6-4820-83d1-803d176f56c5",
-          "urn:5d7bff8e-3649-4279-b652-65208d3038d8"
+          "urn:0bbb1294-8273-4059-89d9-af92f4a71b99",
+          "urn:6d71a816-eb5c-40c8-abd0-ba55ee51be5c"
         ]
       },
       {
-        "@id": "urn:c96b85ef-9bad-41dc-a413-025a5563094d",
+        "@id": "urn:fffc11f4-7b98-4d70-b7a4-666db1428765",
         "Label": "tshift",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:391b6139-ccc6-4820-83d1-803d176f56c5"
+          "urn:0bbb1294-8273-4059-89d9-af92f4a71b99"
         ]
       },
       {
-        "@id": "urn:ce0d6a11-9e19-480d-b9bc-04a7d6ccce36",
+        "@id": "urn:091391a5-1062-44cc-b7b6-4e2e5f2e005a",
         "Label": "align",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:706293e7-948d-45eb-98f1-39e4e201f4eb",
-          "urn:c6371710-d2ff-4ab7-a394-f9917321103e"
+          "urn:f4d3c9da-afba-4300-bdb6-8b2eddc90883",
+          "urn:fc13645c-7312-4383-ae53-acf45451ee3b"
         ]
       },
       {
-        "@id": "urn:f266cd82-e270-492d-8a34-0fd70149eda3",
+        "@id": "urn:2656f2fc-32a0-4db6-82a3-1bee8c7c1262",
         "Label": "tlrc",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:7c6a5a4a-63e5-4786-b73c-f906e5120d91",
-          "urn:b2f24b4e-a723-44a7-bfeb-7434a9229cee",
-          "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb"
+          "urn:25b260b1-6825-40d3-b423-c05cca0747fb",
+          "urn:c71c3c10-c978-44ab-9ef6-ddf0ccebe5cf",
+          "urn:fb7367d2-16c2-4df8-b59a-428cf588b529"
         ]
       },
       {
-        "@id": "urn:21662e29-fc09-4b5e-8c02-31ca30ee9d23",
+        "@id": "urn:f7097c96-3c16-4787-89da-87315bb9ca69",
         "Label": "volreg",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:0924054c-0c39-4d36-b059-e742e85e493d",
-          "urn:0924054c-0c39-4d36-b059-e742e85e493d",
-          "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
-          "urn:3e26d898-d64e-4301-8def-9765c710bcdf",
-          "urn:0924054c-0c39-4d36-b059-e742e85e493d",
-          "urn:3e26d898-d64e-4301-8def-9765c710bcdf",
-          "urn:e9aec74c-9fea-437a-8d93-0ae9789f2d8a",
-          "urn:5f05c7a5-2284-4cdf-b443-eaacdd73c3dc",
-          "urn:c48fddaa-6cf5-4453-b931-ef29776dbaad",
-          "urn:dcb7674a-1e3c-411c-95d8-0e4fc5aab43e",
-          "urn:2714f869-ac76-4842-8998-8d005cbe8b00",
-          "urn:c6b77905-a877-4bf7-bb02-8b2c581b45a6",
-          "urn:3e26d898-d64e-4301-8def-9765c710bcdf",
-          "urn:8b7ebf9b-55a0-4a1d-b503-719151eebc50"
+          "urn:43044f87-e488-43eb-8305-0ff802654d36",
+          "urn:43044f87-e488-43eb-8305-0ff802654d36",
+          "urn:fb7367d2-16c2-4df8-b59a-428cf588b529",
+          "urn:09963577-4d12-4c45-b9d1-d37b89b1772f",
+          "urn:43044f87-e488-43eb-8305-0ff802654d36",
+          "urn:09963577-4d12-4c45-b9d1-d37b89b1772f",
+          "urn:9efbf360-3367-48bb-84f5-b1c6d36200fc",
+          "urn:1fb8b55b-7e5a-4562-a76a-8de3078be908",
+          "urn:8cfe4c47-39a7-4a5f-b536-c73da420a8c7",
+          "urn:33a215f5-9350-45b5-a102-e4271fdf8a02",
+          "urn:7bd74fec-fc5a-41bb-8129-3c537670646c",
+          "urn:90825931-1e37-4c79-845e-6ce2e98b2146",
+          "urn:09963577-4d12-4c45-b9d1-d37b89b1772f",
+          "urn:f58b2410-1003-4339-820b-f8d53e229a17"
         ]
       },
       {
-        "@id": "urn:133cc17d-bdb0-4a73-a87d-102c3a843276",
+        "@id": "urn:da5aa1af-62a9-4d38-b211-b84e477282bf",
         "Label": "blur",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:8ebafb08-97b1-4df0-bcd0-c9dbac423ea5",
-          "urn:fcbb6d50-3a39-441e-8ef0-33ce03204491"
+          "urn:6c86b3b9-616a-44e3-b672-aa3119a86cb6",
+          "urn:cf23cf03-802b-4a40-ae8e-e166ab01ad57"
         ]
       },
       {
-        "@id": "urn:8f5d1740-44de-48d3-8770-2d0f32d89de9",
+        "@id": "urn:b4572bdc-7d32-497b-95a3-6bfac197ab0d",
         "Label": "mask",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:87df8dbe-2e41-469e-8d14-659937a28e3b",
-          "urn:3e26d898-d64e-4301-8def-9765c710bcdf",
-          "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4",
-          "urn:a68d5032-c2be-4a84-ab5d-fbde9e657d5f",
-          "urn:65393bc8-f970-412f-9ce9-6614d4d6200a",
-          "urn:c65ad0ab-2625-4563-8b53-45bd217dfa41",
-          "urn:65393bc8-f970-412f-9ce9-6614d4d6200a",
-          "urn:c65ad0ab-2625-4563-8b53-45bd217dfa41",
-          "urn:9f3489e8-3177-45d1-a55e-0af7bb8c0eab",
-          "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4",
-          "urn:a50e4d44-5998-469b-bdd7-e58dc42e9c39"
+          "urn:e72745d0-8643-4d35-ba85-e602bf262c70",
+          "urn:09963577-4d12-4c45-b9d1-d37b89b1772f",
+          "urn:616c57ac-c682-45d4-a485-283ce083a8b0",
+          "urn:e91c878a-3a1c-4e2e-afb2-cea694f8cfab",
+          "urn:18ce82e3-98b1-4bc1-8d21-6baecf8def51",
+          "urn:7bba9bc4-f141-4036-bfe9-719e2f2f674d",
+          "urn:18ce82e3-98b1-4bc1-8d21-6baecf8def51",
+          "urn:7bba9bc4-f141-4036-bfe9-719e2f2f674d",
+          "urn:616c57ac-c682-45d4-a485-283ce083a8b0",
+          "urn:73e1291d-b339-436f-b8c7-f9c93ceb0c63",
+          "urn:aee6ccfc-49bc-4c7f-b671-bca972835626"
         ]
       },
       {
-        "@id": "urn:839d773c-d1ea-428c-980b-5c45cbd39a55",
+        "@id": "urn:1110b4f6-de75-4004-9645-7a86c1244c67",
         "Label": "scale",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:87df8dbe-2e41-469e-8d14-659937a28e3b",
-          "urn:87df8dbe-2e41-469e-8d14-659937a28e3b",
-          "urn:e0d079fd-d9b3-4dbd-92b4-21710d49451a",
-          "urn:c6b77905-a877-4bf7-bb02-8b2c581b45a6"
+          "urn:e72745d0-8643-4d35-ba85-e602bf262c70",
+          "urn:61c7bd3a-5bdf-448f-9deb-d13ead4dd708",
+          "urn:90825931-1e37-4c79-845e-6ce2e98b2146",
+          "urn:e72745d0-8643-4d35-ba85-e602bf262c70"
         ]
       },
       {
-        "@id": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "@id": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "Label": "regress",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:a9c4648d-41a0-4fe4-90e6-41b5f0a72d3e",
-          "urn:a9c4648d-41a0-4fe4-90e6-41b5f0a72d3e",
-          "urn:a9c4648d-41a0-4fe4-90e6-41b5f0a72d3e",
-          "urn:84e80130-5c98-46ec-ad2f-28ae98a0c8f4",
-          "urn:84e80130-5c98-46ec-ad2f-28ae98a0c8f4",
-          "urn:c00ec312-9c80-4217-b67b-1cf38581bceb",
-          "urn:5dc549f4-647c-486e-8759-782021b9509f",
-          "urn:1de485b9-a047-4a69-b2bf-8d71b7de8903",
-          "urn:5a7b2004-f5c6-4f5b-ace8-adb7207782e0",
-          "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4",
-          "urn:cbfc8ec2-5355-4a4f-aaf8-dc161b588f7d",
-          "urn:ee3d8f5f-b513-4b0c-b42b-3ab7434d558f",
-          "urn:0f469813-3e5f-475c-a372-f4c2eccfb6a5",
-          "urn:93dba0ab-ccea-44d9-8dc3-a8e853cd4d31",
-          "urn:68476387-e9e1-4562-bd05-044521173b60",
-          "urn:7eef4a4b-730b-4fea-b783-9403cf46b7fa",
-          "urn:4e2824a4-208e-4109-98cd-d2aa9a90ede2",
-          "urn:4e2824a4-208e-4109-98cd-d2aa9a90ede2"
+          "urn:0e860a16-9036-4a12-a42f-715b6e2503ea",
+          "urn:0e860a16-9036-4a12-a42f-715b6e2503ea",
+          "urn:0e860a16-9036-4a12-a42f-715b6e2503ea",
+          "urn:a22a0a26-9679-4208-a173-4e8e87fa031c",
+          "urn:a22a0a26-9679-4208-a173-4e8e87fa031c",
+          "urn:8d09e527-652f-4076-80ce-0cf83cc38ddc",
+          "urn:d93acab0-193e-49b6-a16f-d6b155678698",
+          "urn:616c57ac-c682-45d4-a485-283ce083a8b0",
+          "urn:67e45d40-4521-44a7-9a69-4a557fce1120",
+          "urn:6d0e42e6-fee1-4138-92a2-dc17b126e960",
+          "urn:023a2890-483b-47d2-b7f8-7df9cdbe3d0a",
+          "urn:a3534236-e1a6-40b2-8f8f-b033d89a9d0d",
+          "urn:bbc46cf1-2945-44ae-a29d-9453d9dc7d90",
+          "urn:a8cb53b6-104c-4d2f-be09-f14150ec2a23",
+          "urn:fda80bd6-96ea-4376-bd3f-195279a3d29a",
+          "urn:1e43c0bd-9af8-46ce-8a5e-b016598773e4",
+          "urn:4f27d341-e215-49f8-a605-583e638b76ac",
+          "urn:4f27d341-e215-49f8-a605-583e638b76ac"
         ]
       },
       {
-        "@id": "urn:2821d248-72d4-4ecf-b631-7d7348247d46",
+        "@id": "urn:875ab4a4-5a87-49db-9e85-dd972fb37cd5",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4",
-          "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4",
-          "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4"
+          "urn:616c57ac-c682-45d4-a485-283ce083a8b0",
+          "urn:616c57ac-c682-45d4-a485-283ce083a8b0",
+          "urn:616c57ac-c682-45d4-a485-283ce083a8b0"
         ]
       },
       {
-        "@id": "urn:01e67382-f8f7-4229-91ba-20b303bf197e",
+        "@id": "urn:0b7078ea-8347-47e3-943c-d5b2a5b008b7",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:61be7326-69b5-415e-a503-f694bba167a7",
+        "AssociatedWith": "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:a63366cb-4305-471f-9c59-3eb80e99629e"
+          "urn:63f29e1b-4b6c-4457-80a6-3d1fbd4cce36"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:c9d8e8ff-1d2f-4924-bdfb-7d9994d48c73",
+        "@id": "urn:f018e574-c168-4881-888c-9219e4b677b5",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_cluster_nn2/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:aa80a37f-3f74-4a58-9430-b8cc5642dd3b",
+        "@id": "urn:7b77f6cf-4ed2-464a-90d4-623dd12ada75",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_cluster_nn2/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:15a47728-78c9-4ccc-8db9-c928c7fc4ae5",
+        "@id": "urn:57568e78-c209-4703-8379-c145283e032f",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:8eadaf47-04dd-49a3-8554-1cc827514124",
+        "@id": "urn:6bfc100c-c4f0-447a-9e02-461e126840ac",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:f0df4582-6ede-4262-af8a-21feda9b538b",
+        "GeneratedBy": "urn:0d4c627b-47f0-41e5-b910-3deee2f35763",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:1e1bc1b5-71fc-4694-8a0f-04858b7489a6",
+        "@id": "urn:9723d944-903b-4c04-8a8f-b4d78556e8b4",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:f0df4582-6ede-4262-af8a-21feda9b538b"
+        "GeneratedBy": "urn:0d4c627b-47f0-41e5-b910-3deee2f35763"
       },
       {
-        "@id": "urn:5c99db67-dab4-4a16-8864-f735f817656f",
+        "@id": "urn:7970c870-e51d-4fa9-9ea9-b98844305997",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:f0df4582-6ede-4262-af8a-21feda9b538b"
+        "GeneratedBy": "urn:0d4c627b-47f0-41e5-b910-3deee2f35763"
       },
       {
-        "@id": "urn:f715da09-7169-4935-8a19-0e64acad6228",
+        "@id": "urn:d371b84e-3f72-47e0-815d-60bda0e0ea20",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:f0df4582-6ede-4262-af8a-21feda9b538b"
+        "GeneratedBy": "urn:0d4c627b-47f0-41e5-b910-3deee2f35763"
       },
       {
-        "@id": "urn:ff50cde1-de86-4145-82b6-32390e1d36da",
+        "@id": "urn:e9e3d0aa-9658-40a4-bf47-6c55ada3b932",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:841327f1-5e7e-4483-acb6-fe061e15ab16",
+        "@id": "urn:834348f8-d41c-407b-a7dd-0209297427d4",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:bda7c9ed-226a-4b59-a89c-f3d9c8bba4f7"
+        "GeneratedBy": "urn:989551bd-89f0-41fd-b83d-ff7f03e47600"
       },
       {
-        "@id": "urn:391b6139-ccc6-4820-83d1-803d176f56c5",
+        "@id": "urn:0bbb1294-8273-4059-89d9-af92f4a71b99",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:5d7bff8e-3649-4279-b652-65208d3038d8",
+        "@id": "urn:6d71a816-eb5c-40c8-abd0-ba55ee51be5c",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:008cf7fd-fd73-41c0-87f8-bb91d64c90ea",
+        "@id": "urn:cb843ce6-4f3d-488c-8ca2-98c312821d59",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:a08509a8-7e5c-425e-b284-91fba26756e9",
+        "GeneratedBy": "urn:d58429c6-9e63-4f00-8a81-abaf77c48ec4",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:ce0367ad-797e-4e33-bcbf-d139eff4002d",
+        "@id": "urn:17e338e3-78a3-420f-ab4b-f48e30cbd207",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:a08509a8-7e5c-425e-b284-91fba26756e9",
+        "GeneratedBy": "urn:d58429c6-9e63-4f00-8a81-abaf77c48ec4",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:391b6139-ccc6-4820-83d1-803d176f56c5",
+        "@id": "urn:0bbb1294-8273-4059-89d9-af92f4a71b99",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:de7ace33-d17f-4db4-985a-577e046b402c",
+        "@id": "urn:24d65676-5458-4491-b14d-afc59bdc3e7c",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:c96b85ef-9bad-41dc-a413-025a5563094d",
+        "GeneratedBy": "urn:fffc11f4-7b98-4d70-b7a4-666db1428765",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:706293e7-948d-45eb-98f1-39e4e201f4eb",
+        "@id": "urn:fc13645c-7312-4383-ae53-acf45451ee3b",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:c6371710-d2ff-4ab7-a394-f9917321103e",
+        "@id": "urn:f4d3c9da-afba-4300-bdb6-8b2eddc90883",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:e438808b-da32-4b02-b7ad-36446653b4ae",
+        "@id": "urn:02ad2de3-ed26-4828-86dd-5090741065b4",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:ce0d6a11-9e19-480d-b9bc-04a7d6ccce36",
+        "GeneratedBy": "urn:091391a5-1062-44cc-b7b6-4e2e5f2e005a",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
       },
       {
-        "@id": "urn:7c6a5a4a-63e5-4786-b73c-f906e5120d91",
+        "@id": "urn:c71c3c10-c978-44ab-9ef6-ddf0ccebe5cf",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -333,7 +333,7 @@
         }
       },
       {
-        "@id": "urn:b2f24b4e-a723-44a7-bfeb-7434a9229cee",
+        "@id": "urn:25b260b1-6825-40d3-b423-c05cca0747fb",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -341,7 +341,7 @@
         }
       },
       {
-        "@id": "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
+        "@id": "urn:fb7367d2-16c2-4df8-b59a-428cf588b529",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -349,16 +349,16 @@
         }
       },
       {
-        "@id": "urn:8b7ebf9b-55a0-4a1d-b503-719151eebc50",
+        "@id": "urn:f58b2410-1003-4339-820b-f8d53e229a17",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:f266cd82-e270-492d-8a34-0fd70149eda3",
+        "GeneratedBy": "urn:2656f2fc-32a0-4db6-82a3-1bee8c7c1262",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
+        "@id": "urn:fb7367d2-16c2-4df8-b59a-428cf588b529",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -366,16 +366,16 @@
         }
       },
       {
-        "@id": "urn:8b7ebf9b-55a0-4a1d-b503-719151eebc50",
+        "@id": "urn:f58b2410-1003-4339-820b-f8d53e229a17",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:f266cd82-e270-492d-8a34-0fd70149eda3",
+        "GeneratedBy": "urn:2656f2fc-32a0-4db6-82a3-1bee8c7c1262",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:0924054c-0c39-4d36-b059-e742e85e493d",
+        "@id": "urn:43044f87-e488-43eb-8305-0ff802654d36",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -383,7 +383,7 @@
         }
       },
       {
-        "@id": "urn:3e26d898-d64e-4301-8def-9765c710bcdf",
+        "@id": "urn:09963577-4d12-4c45-b9d1-d37b89b1772f",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -391,7 +391,7 @@
         }
       },
       {
-        "@id": "urn:e9aec74c-9fea-437a-8d93-0ae9789f2d8a",
+        "@id": "urn:9efbf360-3367-48bb-84f5-b1c6d36200fc",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -399,7 +399,7 @@
         }
       },
       {
-        "@id": "urn:5f05c7a5-2284-4cdf-b443-eaacdd73c3dc",
+        "@id": "urn:1fb8b55b-7e5a-4562-a76a-8de3078be908",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run+tlrc",
         "digest": {
@@ -407,7 +407,7 @@
         }
       },
       {
-        "@id": "urn:c48fddaa-6cf5-4453-b931-ef29776dbaad",
+        "@id": "urn:8cfe4c47-39a7-4a5f-b536-c73da420a8c7",
         "Label": "dfile.r*.1D",
         "AtLocation": "dfile.r*.1D",
         "digest": {
@@ -415,7 +415,7 @@
         }
       },
       {
-        "@id": "urn:dcb7674a-1e3c-411c-95d8-0e4fc5aab43e",
+        "@id": "urn:33a215f5-9350-45b5-a102-e4271fdf8a02",
         "Label": "rm.epi.min.r01",
         "AtLocation": "rm.epi.min.r01+tlrc",
         "digest": {
@@ -423,7 +423,7 @@
         }
       },
       {
-        "@id": "urn:2714f869-ac76-4842-8998-8d005cbe8b00",
+        "@id": "urn:7bd74fec-fc5a-41bb-8129-3c537670646c",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run+tlrc",
         "digest": {
@@ -431,7 +431,7 @@
         }
       },
       {
-        "@id": "urn:c6b77905-a877-4bf7-bb02-8b2c581b45a6",
+        "@id": "urn:90825931-1e37-4c79-845e-6ce2e98b2146",
         "Label": "mask_epi_extents",
         "AtLocation": "mask_epi_extents+tlrc",
         "digest": {
@@ -439,97 +439,97 @@
         }
       },
       {
-        "@id": "urn:74cebf5a-7236-4402-8dc4-8d5936bcc43c",
+        "@id": "urn:61060efc-571a-4d70-8b50-c0d29a64aa93",
         "Label": "mat.r$run.vr.aff12.1D",
         "AtLocation": "mat.r$run.vr.aff12.1D",
-        "GeneratedBy": "urn:21662e29-fc09-4b5e-8c02-31ca30ee9d23",
+        "GeneratedBy": "urn:f7097c96-3c16-4787-89da-87315bb9ca69",
         "digest": {
           "sha256": "2e6e6c2ce8089cfa3c6e11dc72fca0cc8497f7a55faae2ced402de4867466c91"
         }
       },
       {
-        "@id": "urn:e9a73030-0006-4ef8-95e3-5834de3078f3",
+        "@id": "urn:0b111a92-c24b-463f-b287-d4090823ed0c",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1",
-        "GeneratedBy": "urn:21662e29-fc09-4b5e-8c02-31ca30ee9d23",
+        "GeneratedBy": "urn:f7097c96-3c16-4787-89da-87315bb9ca69",
         "digest": {
           "sha256": "1023e3c16cecdbdc73ea456bcf33c2e5bb4f1e07094b73d29022d651e5fa3f85"
         }
       },
       {
-        "@id": "urn:b7a38a99-015b-4da7-abb8-e6579ba35172",
+        "@id": "urn:e4ffa6c2-3aaa-4e9c-86ef-f100b66c8858",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run",
-        "GeneratedBy": "urn:21662e29-fc09-4b5e-8c02-31ca30ee9d23",
+        "GeneratedBy": "urn:f7097c96-3c16-4787-89da-87315bb9ca69",
         "digest": {
           "sha256": "03d6cba0426c5545e350e6b63a19b0e46f8dfa2223fd08691753e8914a479e36"
         }
       },
       {
-        "@id": "urn:42bc175e-636a-4d3f-8a84-ab0cec178f89",
+        "@id": "urn:973d08db-2757-4255-a5df-d8705d9b523e",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run",
-        "GeneratedBy": "urn:21662e29-fc09-4b5e-8c02-31ca30ee9d23",
+        "GeneratedBy": "urn:f7097c96-3c16-4787-89da-87315bb9ca69",
         "digest": {
           "sha256": "b1b9128c103ea246625db1a35e6f474a221ca6c1105a30df38aefdc4d5421e84"
         }
       },
       {
-        "@id": "urn:6b7b084a-b2b2-475f-920a-c985e82cda62",
+        "@id": "urn:4d096062-937a-423a-b156-281a3a0a9777",
         "Label": "rm.epi.min.r$run",
         "AtLocation": "rm.epi.min.r$run",
-        "GeneratedBy": "urn:21662e29-fc09-4b5e-8c02-31ca30ee9d23",
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         "AtLocation": "rm.noise.all",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
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           "sha256": "431314eb75d086ce08373b3a374427969e89414c4a2d607e449c1f6485c547af"
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       {
-        "@id": "urn:5d2b1b83-5fd8-4230-8e74-13743ba69bb6",
+        "@id": "urn:20e019c2-47db-4582-bbbf-757165739cfb",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
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-        "@id": "urn:7251771c-da51-422f-a159-b58a8d2cb612",
+        "@id": "urn:5bd09178-6596-403f-afa9-3c62d7e3b3aa",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
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           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
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       },
       {
-        "@id": "urn:765995cc-ff2c-4b3d-ab06-620255e297ff",
+        "@id": "urn:4582228c-5c9e-4362-af4f-037553005fcb",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
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       },
       {
-        "@id": "urn:44bcc79e-e67b-41c1-bdea-e8108a4a9530",
+        "@id": "urn:67ddf102-3107-48cc-8e31-7c0c68f9e8f7",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:9e51b700-c8bb-4dc4-8c98-dd654c73d9c0",
+        "@id": "urn:92eb5d77-cf54-4cc9-bc54-d83c7d463e05",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:2f293ea8-ac23-4731-99a3-f243de258b39",
+        "@id": "urn:fa2200bb-fb7c-4e93-af75-14a37b278ed7",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
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       },
       {
-        "@id": "urn:91245685-6840-4d58-8b62-1ffe58f4fb9b",
+        "@id": "urn:309094d0-38c7-4b73-b683-aebd81f546ff",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
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       },
       {
-        "@id": "urn:0c4d4783-701f-4c37-8ea8-410b00bee391",
+        "@id": "urn:3c62785c-8c8b-41d2-8681-a25cfc8feab1",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:f3407fbb-3243-4640-99f3-1f4c16240f36",
+        "@id": "urn:98b8d939-2139-43fe-9809-aff688aedb64",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:96acc8d3-b1fb-411a-8a5e-0cd058d715e7",
+        "GeneratedBy": "urn:b9f762ec-b84c-448f-8d10-a7ce9720420d",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:4e8eb6a1-96ac-4d65-8d34-d2db225432c4",
+        "@id": "urn:616c57ac-c682-45d4-a485-283ce083a8b0",
         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
         }
       },
       {
-        "@id": "urn:c165d2c7-8568-430c-9d4d-bac199957b9c",
+        "@id": "urn:5ab6aa9e-0882-49b0-8c88-f1d550948dd0",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:2821d248-72d4-4ecf-b631-7d7348247d46",
+        "GeneratedBy": "urn:875ab4a4-5a87-49db-9e85-dd972fb37cd5",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:9bfa1c28-4a98-4831-a854-82969c939da3",
+        "@id": "urn:ed65201d-3e77-467d-849e-678c12d4b06f",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:2821d248-72d4-4ecf-b631-7d7348247d46",
+        "GeneratedBy": "urn:875ab4a4-5a87-49db-9e85-dd972fb37cd5",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:1c25d679-0112-44a8-99bc-1a697bedf04c",
+        "@id": "urn:4c293e1b-55b8-482c-a455-c0a603fbb1e8",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:2821d248-72d4-4ecf-b631-7d7348247d46",
+        "GeneratedBy": "urn:875ab4a4-5a87-49db-9e85-dd972fb37cd5",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:a63366cb-4305-471f-9c59-3eb80e99629e",
+        "@id": "urn:63f29e1b-4b6c-4457-80a6-3d1fbd4cce36",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:4994ee96-8a5f-4514-9409-283aac70c4aa",
+        "@id": "urn:226d6375-1bcb-497b-bbc5-2839fa204101",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:01e67382-f8f7-4229-91ba-20b303bf197e",
+        "GeneratedBy": "urn:0b7078ea-8347-47e3-943c-d5b2a5b008b7",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc.jsonld b/examples/from_parsers/afni/afni_clustconn_26_proc.jsonld
index 5bef02d36..420b0e25d 100644
--- a/examples/from_parsers/afni/afni_clustconn_26_proc.jsonld
+++ b/examples/from_parsers/afni/afni_clustconn_26_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "@id": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:d35acdb2-65ca-430b-977c-ec6062fccd3f",
+        "@id": "urn:f4e177a7-c607-494d-a39c-faacc2b24ddd",
         "Label": "Make directory",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:34ae4e39-b2ff-4522-936a-cc2b8c3a6e41",
+        "@id": "urn:a1fccbf8-9cdb-4933-9e66-288648dedef9",
         "Label": "Make directory",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:7bc01b6f-d058-4302-b0df-12b5722c8f9a",
+        "@id": "urn:5e833f79-5816-4ba7-aba6-6aa5c0860121",
         "Label": "cp",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "cp ./afni_cluster_nn3/tone_counting_onset_times.txt ./afni_cluster_nn3/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:95f75c97-0fac-44dd-a66b-ad1a188906a5",
-          "urn:65519446-a0d5-4e2f-99ae-44bf766cc3df"
+          "urn:442c7bb5-4110-445a-becc-73c99a9b4c58",
+          "urn:5d425601-5d7e-4ed9-9377-d968237a7bc4"
         ]
       },
       {
-        "@id": "urn:757e1873-4676-46d2-a92f-5b67fb687b7c",
+        "@id": "urn:19fbe20a-d53a-4526-a882-a3fe0e9e8bea",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:1cbc6101-33d2-4015-8b31-5647416620dd"
+          "urn:0e2a0df4-d48d-4631-9dc0-35ad90c8c744"
         ]
       },
       {
-        "@id": "urn:92acfa7c-8df3-461e-8e54-89c8affe431a",
+        "@id": "urn:f542fa6c-2d9f-427c-86d8-d9a9a2ba5436",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:2fa4fb99-2391-410c-a805-a4f4476069d3"
+          "urn:7fad1b91-dae2-4ff9-88e7-e8e798043820"
         ]
       },
       {
-        "@id": "urn:ab218459-a4c9-43cd-944e-ac16838e74b7",
+        "@id": "urn:ec1e16aa-96dd-498e-b63c-edbe048ab155",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:8a14f7e7-6a33-44dc-a13b-7e287c052b95"
+          "urn:c05383d4-1b77-4993-8d08-0684a1484222"
         ]
       },
       {
-        "@id": "urn:19c3f309-3463-46a0-9a6b-485c9a142a27",
+        "@id": "urn:e7b2e4af-beef-4f6a-8237-0d0680e02e9a",
         "Label": "cat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:fe62e495-44fa-47c6-8369-ac8419b22fab"
+          "urn:6f328faa-8b2a-4820-83bc-b21ef00175a5"
         ]
       },
       {
-        "@id": "urn:bef376eb-1166-4a5b-afa4-fe584c67bb18",
+        "@id": "urn:434be8cd-9929-453f-8644-d42a0ecab635",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:8a14f7e7-6a33-44dc-a13b-7e287c052b95"
+          "urn:c05383d4-1b77-4993-8d08-0684a1484222"
         ]
       },
       {
-        "@id": "urn:e2c6602c-92d2-4b70-b934-693f7eb32861",
+        "@id": "urn:e77ccb11-2453-4a71-8c6a-7aa8acf1a8ad",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:17768148-44d0-425b-84d0-501f2fcfeed7",
-          "urn:079c273c-30dc-4f6a-86c9-5a6bd6ad3607"
+          "urn:505b3ba1-3f18-4073-b8cf-0761605c222b",
+          "urn:b09f1df1-7eef-43ab-b856-44362156042d"
         ]
       },
       {
-        "@id": "urn:5e9e3681-6b47-46c2-ae37-07ec5d9e01c1",
+        "@id": "urn:bad1b199-f926-4892-9e5d-b40f8fbd3997",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:c2e05bfa-95fe-4158-86df-ac105d6aa838",
-          "urn:a12f67fa-445a-4453-bfea-0530ee29ab2d"
+          "urn:8111caba-eb40-4a7e-bdba-a17cdf324f75",
+          "urn:94e688ae-2361-4473-8e64-a7c826738680"
         ]
       },
       {
-        "@id": "urn:394709cb-79e2-416f-bb26-838d0473f728",
+        "@id": "urn:ee130f6b-a062-46b2-b51d-4a1e42d71915",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:83c18660-6b2b-43ef-9001-34ec53eb6663"
+          "urn:b2670328-db1e-4674-90cb-13fcc914f630"
         ]
       },
       {
-        "@id": "urn:c7199008-6f75-4762-a1e8-cf1323e12c40",
+        "@id": "urn:4448454e-d15c-4499-8c25-12bb3e6fe805",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:2070ae2f-3560-47c0-ac79-34a688f24a9a"
+          "urn:82256fe2-87d2-4e98-ab6a-4c27b73a2e44"
         ]
       },
       {
-        "@id": "urn:6fb154ac-656d-4ec4-b52c-ba5f3a2cb810",
+        "@id": "urn:3d32c7eb-ba23-4b67-a36c-c499e9d77732",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:2070ae2f-3560-47c0-ac79-34a688f24a9a"
+          "urn:82256fe2-87d2-4e98-ab6a-4c27b73a2e44"
         ]
       },
       {
-        "@id": "urn:1c51ee27-d1e8-4e43-a40f-6ccd1b31dc4d",
+        "@id": "urn:09b2ca30-3c1a-4e49-9157-1698e71f13b0",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:83c18660-6b2b-43ef-9001-34ec53eb6663"
+          "urn:b2670328-db1e-4674-90cb-13fcc914f630"
         ]
       },
       {
-        "@id": "urn:78ed0f4d-6f99-449e-a8c8-4eefb0449abd",
+        "@id": "urn:d8cb9afd-8dc9-4f9a-8770-c49d73892b8b",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:19cc0426-833f-4cbe-9023-b74048c34ee1",
-          "urn:2070ae2f-3560-47c0-ac79-34a688f24a9a",
-          "urn:85f436f2-dd24-4403-b49f-32da2110e7be"
+          "urn:23a692d8-75aa-4033-a468-aa0e65da9c36",
+          "urn:82256fe2-87d2-4e98-ab6a-4c27b73a2e44",
+          "urn:aece4d2b-0460-4251-8c7f-126fce456814"
         ]
       },
       {
-        "@id": "urn:27891055-5aed-4c5b-97cc-85ba345b94d4",
+        "@id": "urn:754ec45e-6b37-49ed-8902-ae1b5b9610bd",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:19cc0426-833f-4cbe-9023-b74048c34ee1",
-          "urn:699957e1-c0b1-455a-ac1e-4d72da9755be",
-          "urn:85f436f2-dd24-4403-b49f-32da2110e7be"
+          "urn:23a692d8-75aa-4033-a468-aa0e65da9c36",
+          "urn:7e3a9ab1-40eb-4692-b0a6-da89e21fe018",
+          "urn:aece4d2b-0460-4251-8c7f-126fce456814"
         ]
       },
       {
-        "@id": "urn:ffde1def-43d5-40db-ac0a-42b7ca760287",
+        "@id": "urn:a3198397-f5bd-445e-9b58-1981dd0a6dba",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:08ce5ea2-6664-46f5-ae28-cb7521a7776d"
+          "urn:bab2ae80-8942-4f06-84a4-3a82ba65b210"
         ]
       },
       {
-        "@id": "urn:72715ec1-d45e-4385-a39a-2e81fe95c12b",
+        "@id": "urn:a0665740-7578-4953-a5d8-2febc139b4c8",
         "Label": "cat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:1fceabbb-ac33-4f3a-9b8f-4e3ee355c460"
+          "urn:a9b86e5d-509c-4128-917c-3441d311007a"
         ]
       },
       {
-        "@id": "urn:5f3b06ec-bc29-436d-b9b9-286e16290002",
+        "@id": "urn:cb9ad31a-ff52-4fc0-9e45-c50f04ad7dd1",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:7ad3059d-8206-4ed1-a834-9bb3cfcb85e0"
+          "urn:4a27a7a8-d862-4a7d-9875-6f60deecb583"
         ]
       },
       {
-        "@id": "urn:dcd723bd-d6ae-4392-95d7-d8de7cf0552a",
+        "@id": "urn:7d205378-c584-45cd-a840-ce5eb3edceba",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:7638c2af-8a37-4b27-9b47-40735fced5d7",
-          "urn:61ad5e58-0713-429a-9ed7-a5bbfa9bea59"
+          "urn:03330031-ed4b-4c42-9765-1ce0737c19e1",
+          "urn:2d8c3fda-3c56-479a-9328-deb5fc80e1e9"
         ]
       },
       {
-        "@id": "urn:ca5ab9bf-eb66-4b0a-90e7-eec0cc934c5e",
+        "@id": "urn:136d77c7-32b6-4e25-8112-3cb9c4cbdb46",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:19cc0426-833f-4cbe-9023-b74048c34ee1"
+          "urn:aece4d2b-0460-4251-8c7f-126fce456814"
         ]
       },
       {
-        "@id": "urn:cd9a5684-f24c-48d7-9be2-e01e71cabb42",
+        "@id": "urn:dec7cd8d-b963-4546-b3e6-5a63b61ef300",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:89a9ca4a-2619-4d72-840c-405f8bc2474f"
+          "urn:afb4482f-41f7-48c4-8884-81f04334d619"
         ]
       },
       {
-        "@id": "urn:a5087b67-20a8-403c-a111-bdeb5a331f4b",
+        "@id": "urn:61891cc9-48c2-4693-8cb8-8cbc53fabbf6",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:e46c42c1-f6d7-4c6d-8965-c5f7011cae42",
-          "urn:9d49b392-18a6-4089-a524-a4d2ea45b105"
+          "urn:6beedc47-df31-4025-9be0-977a2f2980fe",
+          "urn:d2fd03b5-32f2-4d3f-9a7e-91a684205c9b"
         ]
       },
       {
-        "@id": "urn:42c7cfa6-3436-47fc-9b0e-0efd39381912",
+        "@id": "urn:b7a893d5-a985-4693-b6c6-2f732211170d",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:a152686d-7cc6-42b9-9157-dc6099e600ce"
+          "urn:d0c0bd35-a9bc-471a-90c8-51581635290c"
         ]
       },
       {
-        "@id": "urn:1077cd25-b4bf-47ce-b006-37f8dec7d4ac",
+        "@id": "urn:df4f0286-cff5-4533-8b9d-da7083d40de2",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:9b462dc8-9807-4841-b48f-e9b74eed7a81",
+        "@id": "urn:6a7a3359-9111-448c-8d33-d9e86321c801",
         "Label": "3dresample",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:19cc0426-833f-4cbe-9023-b74048c34ee1",
-          "urn:d43dafc3-339c-4c4d-818a-dfa1b4c67e05"
+          "urn:8151d2f2-5ad5-434d-863a-7e01c98263b7",
+          "urn:aece4d2b-0460-4251-8c7f-126fce456814"
         ]
       },
       {
-        "@id": "urn:41da3ae7-d09c-401e-8d9f-c440dcdfc993",
+        "@id": "urn:c8e777cc-a609-4c27-a92d-c46856ae9e17",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:5e886210-d28e-41de-9740-05d572c5593e"
+          "urn:7424fdd6-0e84-4e65-8552-14c9c1e6a56b"
         ]
       },
       {
-        "@id": "urn:059c5470-f710-433e-b7f0-16be8f4d6632",
+        "@id": "urn:32ca3d5b-761b-4903-b0a1-49daa50ee44d",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:926a47a6-ea55-4ad2-9e72-15447c30aeae",
-          "urn:2ca333a5-9e0a-45be-b763-0a5270454e92"
+          "urn:3f6ebb09-33c2-450f-a017-1aba59644f2e",
+          "urn:f7f2f055-f692-42dd-b871-eb23b1fa7842"
         ]
       },
       {
-        "@id": "urn:b44ee1b6-ca32-4efe-b5b2-2295397c29f9",
+        "@id": "urn:2e5c9e5f-35b0-41e0-832d-b95799f3925a",
         "Label": "3ddot",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:926a47a6-ea55-4ad2-9e72-15447c30aeae",
-          "urn:2ca333a5-9e0a-45be-b763-0a5270454e92"
+          "urn:3f6ebb09-33c2-450f-a017-1aba59644f2e",
+          "urn:f7f2f055-f692-42dd-b871-eb23b1fa7842"
         ]
       },
       {
-        "@id": "urn:57bd302c-cbfd-4a43-a6e6-1604de3d3428",
+        "@id": "urn:40f457bf-fbab-4594-8373-c6a3665036e7",
         "Label": "3dresample",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:d38ceba6-3dd6-445f-8989-59b9378fdb02",
-          "urn:d43dafc3-339c-4c4d-818a-dfa1b4c67e05"
+          "urn:19ca205d-a4a5-46a2-8920-bfedeae3ad91",
+          "urn:8151d2f2-5ad5-434d-863a-7e01c98263b7"
         ]
       },
       {
-        "@id": "urn:6c0a31ef-4f45-4001-a08d-138d9a603d2d",
+        "@id": "urn:be636df1-e671-4fc0-b305-d3a0366578bf",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:993b368d-e7e0-4da5-b496-75d6c1c7cc60"
+          "urn:153fa781-92e7-4922-ad3d-98ee7ca75991"
         ]
       },
       {
-        "@id": "urn:b1207d77-5b40-4bd8-b6a6-55ac3138df83",
+        "@id": "urn:0d259108-198a-403f-b1d3-bba09529827d",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:a152686d-7cc6-42b9-9157-dc6099e600ce"
+          "urn:d0c0bd35-a9bc-471a-90c8-51581635290c"
         ]
       },
       {
-        "@id": "urn:150bb5a4-2723-4470-8249-b8a11cf37033",
+        "@id": "urn:2f679b50-65f1-46d1-9294-aba74a8d3c0c",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:a152686d-7cc6-42b9-9157-dc6099e600ce",
-          "urn:cccc4f59-e637-443d-afc8-653b7d3c359d",
-          "urn:61ad5e58-0713-429a-9ed7-a5bbfa9bea59"
+          "urn:2d8c3fda-3c56-479a-9328-deb5fc80e1e9",
+          "urn:3cb3b1c6-e903-4569-a9fb-c6c5b3e5c4c5",
+          "urn:d0c0bd35-a9bc-471a-90c8-51581635290c"
         ]
       },
       {
-        "@id": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
+        "@id": "urn:7821235c-3bfa-4236-abb0-1b9543708a70",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:0d2d17a2-b566-4927-927c-9f4a9d8d2883"
+          "urn:bec94431-e6e6-49b1-9844-70ed437c5011"
         ]
       },
       {
-        "@id": "urn:a1fccbf8-9cdb-4933-9e66-288648dedef9",
+        "@id": "urn:10441440-f68c-4a5f-b183-f563d2e794c3",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:0d2d17a2-b566-4927-927c-9f4a9d8d2883"
+          "urn:bec94431-e6e6-49b1-9844-70ed437c5011"
         ]
       },
       {
-        "@id": "urn:5d425601-5d7e-4ed9-9377-d968237a7bc4",
+        "@id": "urn:2c547239-06b0-4d02-bc5c-fb786699f884",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:0d2d17a2-b566-4927-927c-9f4a9d8d2883"
+          "urn:bec94431-e6e6-49b1-9844-70ed437c5011"
         ]
       },
       {
-        "@id": "urn:7ee58b52-0d8d-455d-bd78-b48d8d308cb5",
+        "@id": "urn:223a4067-5f9c-4c22-88f3-a4a2c47ed665",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:19fbe20a-d53a-4526-a882-a3fe0e9e8bea"
+          "urn:3f4994fb-b29d-46be-80da-ba384b45215f"
         ]
       },
       {
-        "@id": "urn:d59db81f-1eaf-446c-be91-a7e7e07425c4",
+        "@id": "urn:5d191212-57cc-456b-85cd-85783c7fe6b9",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:0e2a0df4-d48d-4631-9dc0-35ad90c8c744"
+          "urn:31b4e687-2c8a-4111-864c-e9c49ea12643"
         ]
       },
       {
-        "@id": "urn:7fad1b91-dae2-4ff9-88e7-e8e798043820",
+        "@id": "urn:056d59d8-964b-4d0f-bb91-9a8707d359dc",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:19fbe20a-d53a-4526-a882-a3fe0e9e8bea"
+          "urn:3f4994fb-b29d-46be-80da-ba384b45215f"
         ]
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       {
-        "@id": "urn:c05383d4-1b77-4993-8d08-0684a1484222",
+        "@id": "urn:045b5f7d-291b-4fa3-9c79-73625dc7cf0c",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:cc93b360-37bb-4882-b87b-548637050754"
+          "urn:33d046bd-be2f-4413-a576-ac8b265651df"
         ]
       },
       {
-        "@id": "urn:6f328faa-8b2a-4820-83bc-b21ef00175a5",
+        "@id": "urn:f1f79801-0474-444d-9932-f7e5d0d51daf",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:b4e74ec0-6df9-4818-9112-7c33cd97bd51"
+          "urn:89482764-88d8-4c62-a56d-1411b5ccfdee"
         ]
       },
       {
-        "@id": "urn:5fec2cf3-fa6a-4cd0-9306-fa3ba9543c53",
+        "@id": "urn:3a9caa74-65f8-4212-8dfb-9f6105f65c2c",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:daed513b-1d35-403b-a28f-b4555092af97",
-          "urn:e77ccb11-2453-4a71-8c6a-7aa8acf1a8ad",
-          "urn:d43dafc3-339c-4c4d-818a-dfa1b4c67e05"
+          "urn:65b903a1-5eeb-488d-b160-9bbf997f6387",
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       },
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-        "@id": "urn:cb13387a-25d8-4625-bb43-2b9446e74e45",
+        "@id": "urn:827ed196-545b-4a41-ba1b-fbb5e32fad7d",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:bad1b199-f926-4892-9e5d-b40f8fbd3997"
+          "urn:f6e491b8-c07b-4a3f-87c8-7454d74ed5f7"
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         "Label": "3dmaskave",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
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-        "@id": "urn:b2670328-db1e-4674-90cb-13fcc914f630",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:afb4482f-41f7-48c4-8884-81f04334d619"
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-        "@id": "urn:82256fe2-87d2-4e98-ab6a-4c27b73a2e44",
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         "Label": "3dcalc",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
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-          "urn:ee130f6b-a062-46b2-b51d-4a1e42d71915"
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+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:09b2ca30-3c1a-4e49-9157-1698e71f13b0"
+          "urn:555f05f3-dbaf-4f5f-ba7e-7c35d5f9ee07"
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         "Label": "1dcat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:d8cb9afd-8dc9-4f9a-8770-c49d73892b8b"
+          "urn:26e3d878-ff09-4d57-83a2-45bf6fe593cc"
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-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
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         "Parameters": {},
         "Used": [
-          "urn:ccb973ca-2141-47aa-a525-6ea2a3e49c50"
+          "urn:045b52c8-7cb0-4b15-98eb-a7a12321b4c6"
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-        "@id": "urn:754ec45e-6b37-49ed-8902-ae1b5b9610bd",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:5b84a168-7b3e-4a42-939c-6ddace47728b"
+          "urn:1fd80f42-e522-4b86-bb22-5df3ece23840"
         ]
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-        "@id": "urn:cc96af70-469a-46be-bda8-7dd0836370b8",
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         "Label": "1dcat",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:5b84a168-7b3e-4a42-939c-6ddace47728b"
+          "urn:1fd80f42-e522-4b86-bb22-5df3ece23840"
         ]
       },
       {
-        "@id": "urn:bab2ae80-8942-4f06-84a4-3a82ba65b210",
+        "@id": "urn:910fd52b-fc9e-4525-99f8-715d9edf7896",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:d43dafc3-339c-4c4d-818a-dfa1b4c67e05"
+          "urn:8151d2f2-5ad5-434d-863a-7e01c98263b7"
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-        "@id": "urn:a9b86e5d-509c-4128-917c-3441d311007a",
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         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:d43dafc3-339c-4c4d-818a-dfa1b4c67e05"
+          "urn:8151d2f2-5ad5-434d-863a-7e01c98263b7"
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-        "@id": "urn:4a27a7a8-d862-4a7d-9875-6f60deecb583",
+        "@id": "urn:3591baa3-31c7-47f7-978d-4a5246174400",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
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         "Parameters": {},
         "Used": [
-          "urn:d43dafc3-339c-4c4d-818a-dfa1b4c67e05"
+          "urn:8151d2f2-5ad5-434d-863a-7e01c98263b7"
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-        "@id": "urn:03330031-ed4b-4c42-9765-1ce0737c19e1",
+        "@id": "urn:9b34c8c7-5d6f-44a8-b84f-cda8e8f97f40",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:2d8c3fda-3c56-479a-9328-deb5fc80e1e9"
+          "urn:734caeea-8af0-4599-9908-c08308cc9452"
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+        "@id": "urn:32d0c5a2-4cd2-4aff-a9e0-4a0bd2f7e626",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:1560e13a-4274-41ec-adcf-6349a0bd9ad8",
+        "AssociatedWith": "urn:6035c3dd-8696-43dc-971f-e8ef69b32e66",
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         "Parameters": {
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@@ -586,22 +586,22 @@
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+        "@id": "urn:4b562a15-6bf7-4e4d-aa40-ce2850c3ad1e",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:d35acdb2-65ca-430b-977c-ec6062fccd3f",
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         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:34ae4e39-b2ff-4522-936a-cc2b8c3a6e41"
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+        "@id": "urn:5d425601-5d7e-4ed9-9377-d968237a7bc4",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_cluster_nn3/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
         }
       },
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-        "@id": "urn:65519446-a0d5-4e2f-99ae-44bf766cc3df",
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         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_cluster_nn3/tone_counting_probe_duration.txt",
         "digest": {
@@ -617,13 +617,13 @@
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-        "@id": "urn:589b66e0-ab84-4130-8846-006b115bfb26",
+        "@id": "urn:7ee58b52-0d8d-455d-bd78-b48d8d308cb5",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:7bc01b6f-d058-4302-b0df-12b5722c8f9a"
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@@ -631,13 +631,13 @@
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+        "@id": "urn:d59db81f-1eaf-446c-be91-a7e7e07425c4",
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         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:757e1873-4676-46d2-a92f-5b67fb687b7c"
+        "GeneratedBy": "urn:19fbe20a-d53a-4526-a882-a3fe0e9e8bea"
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+        "@id": "urn:7fad1b91-dae2-4ff9-88e7-e8e798043820",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
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@@ -645,13 +645,13 @@
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+        "@id": "urn:a3c9a40b-6244-4a75-a576-433e5217bf0a",
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         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:92acfa7c-8df3-461e-8e54-89c8affe431a"
+        "GeneratedBy": "urn:f542fa6c-2d9f-427c-86d8-d9a9a2ba5436"
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@@ -659,16 +659,16 @@
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+        "@id": "urn:cc93b360-37bb-4882-b87b-548637050754",
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-        "GeneratedBy": "urn:ab218459-a4c9-43cd-944e-ac16838e74b7",
+        "GeneratedBy": "urn:ec1e16aa-96dd-498e-b63c-edbe048ab155",
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+        "@id": "urn:6f328faa-8b2a-4820-83bc-b21ef00175a5",
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@@ -676,25 +676,25 @@
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-        "@id": "urn:bb4d707f-12b6-400a-bc05-53f990272f5b",
+        "@id": "urn:b4e74ec0-6df9-4818-9112-7c33cd97bd51",
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-        "GeneratedBy": "urn:19c3f309-3463-46a0-9a6b-485c9a142a27",
+        "GeneratedBy": "urn:e7b2e4af-beef-4f6a-8237-0d0680e02e9a",
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+        "@id": "urn:daed513b-1d35-403b-a28f-b4555092af97",
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+        "@id": "urn:b09f1df1-7eef-43ab-b856-44362156042d",
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@@ -702,7 +702,7 @@
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@@ -710,16 +710,16 @@
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@@ -1093,25 +1093,25 @@
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@@ -1119,16 +1119,16 @@
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-        "GeneratedBy": "urn:c05383d4-1b77-4993-8d08-0684a1484222",
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@@ -1136,16 +1136,16 @@
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@@ -1153,7 +1153,7 @@
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@@ -1161,16 +1161,16 @@
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-        "@id": "urn:505b3ba1-3f18-4073-b8cf-0761605c222b",
+        "@id": "urn:03dd0219-7bd8-48db-a3c8-226e556c956e",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:5fec2cf3-fa6a-4cd0-9306-fa3ba9543c53",
+        "GeneratedBy": "urn:3a9caa74-65f8-4212-8dfb-9f6105f65c2c",
         "digest": {
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-        "@id": "urn:bad1b199-f926-4892-9e5d-b40f8fbd3997",
+        "@id": "urn:f6e491b8-c07b-4a3f-87c8-7454d74ed5f7",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc",
         "digest": {
@@ -1178,25 +1178,25 @@
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       {
-        "@id": "urn:8111caba-eb40-4a7e-bdba-a17cdf324f75",
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         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:cb13387a-25d8-4625-bb43-2b9446e74e45",
+        "GeneratedBy": "urn:827ed196-545b-4a41-ba1b-fbb5e32fad7d",
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           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
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       {
-        "@id": "urn:ee130f6b-a062-46b2-b51d-4a1e42d71915",
+        "@id": "urn:16569afa-e9a2-4485-bc9f-6d2049cda352",
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         "AtLocation": "gmean.errts.unit.1D",
-        "GeneratedBy": "urn:94e688ae-2361-4473-8e64-a7c826738680",
+        "GeneratedBy": "urn:f6a7d888-b32e-41fd-986d-4a7ced3524ee",
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-        "@id": "urn:afb4482f-41f7-48c4-8884-81f04334d619",
+        "@id": "urn:15b1634e-9051-43c0-a06f-29a9d5f199c1",
         "Label": "out.gcor.1D",
         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
       },
       {
-        "@id": "urn:4448454e-d15c-4499-8c25-12bb3e6fe805",
+        "@id": "urn:cb42c009-a1c9-464f-b79d-ad36d17f1da6",
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         "AtLocation": "-",
-        "GeneratedBy": "urn:b2670328-db1e-4674-90cb-13fcc914f630",
+        "GeneratedBy": "urn:0cd1409b-fa23-4fa9-b126-4875a72d4205",
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       {
-        "@id": "urn:f53199d2-d78d-4610-ba41-c25c2fed43d4",
+        "@id": "urn:777b0433-6ebc-4e4d-8c6b-040c2b716fee",
         "Label": "rm.errts.unit",
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@@ -1221,16 +1221,16 @@
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       {
-        "@id": "urn:cfe72aec-bd1a-4ee1-a000-f14251902181",
+        "@id": "urn:1174c647-6787-4ce9-8047-d006125b1459",
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         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:82256fe2-87d2-4e98-ab6a-4c27b73a2e44",
+        "GeneratedBy": "urn:35a1ea29-a6a9-4480-935b-60a9ed7fb806",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
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       {
-        "@id": "urn:09b2ca30-3c1a-4e49-9157-1698e71f13b0",
+        "@id": "urn:555f05f3-dbaf-4f5f-ba7e-7c35d5f9ee07",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1238,16 +1238,16 @@
         }
       },
       {
-        "@id": "urn:7bcf3122-e120-44d2-8fb2-8e67537b56b3",
+        "@id": "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:bd6c8246-39c9-4521-a578-2fbd75723ccf",
+        "GeneratedBy": "urn:ec6ed868-0e75-4970-907a-8803c2f75303",
         "digest": {
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       {
-        "@id": "urn:d8cb9afd-8dc9-4f9a-8770-c49d73892b8b",
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@@ -1255,16 +1255,16 @@
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-        "@id": "urn:aece4d2b-0460-4251-8c7f-126fce456814",
+        "@id": "urn:124643ff-622e-404b-84b0-7cad78f62a3b",
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         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:23a692d8-75aa-4033-a468-aa0e65da9c36",
+        "GeneratedBy": "urn:0f534eba-dacb-4931-bba9-6c47154c0249",
         "digest": {
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       {
-        "@id": "urn:ccb973ca-2141-47aa-a525-6ea2a3e49c50",
+        "@id": "urn:045b52c8-7cb0-4b15-98eb-a7a12321b4c6",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
         "digest": {
@@ -1272,16 +1272,16 @@
         }
       },
       {
-        "@id": "urn:4b9261b5-0c66-406d-b2ae-216ddb667897",
+        "@id": "urn:c9a2a664-d761-4a85-b582-3d8cf5cf2c6b",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:a5e6e3c8-5a2d-4230-b3ae-7d5cc1e7afb8",
+        "GeneratedBy": "urn:57d24b1c-57b6-4a34-b8ed-55ac1bfcf2b1",
         "digest": {
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       {
-        "@id": "urn:5b84a168-7b3e-4a42-939c-6ddace47728b",
+        "@id": "urn:1fd80f42-e522-4b86-bb22-5df3ece23840",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
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       {
-        "@id": "urn:7e3a9ab1-40eb-4692-b0a6-da89e21fe018",
+        "@id": "urn:c4d49793-4cbe-4e0c-8d7d-23da9348dd19",
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         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:754ec45e-6b37-49ed-8902-ae1b5b9610bd",
+        "GeneratedBy": "urn:03fee530-1ea7-404f-a470-3f22a2e8998c",
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       {
-        "@id": "urn:a3198397-f5bd-445e-9b58-1981dd0a6dba",
+        "@id": "urn:731b5cbe-375b-4df1-a95e-9b3980f7cda6",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:cc96af70-469a-46be-bda8-7dd0836370b8",
+        "GeneratedBy": "urn:fe9b261f-86e1-42ae-8c4e-90a11247319a",
         "digest": {
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       {
-        "@id": "urn:a0665740-7578-4953-a5d8-2febc139b4c8",
+        "@id": "urn:8b84cd2b-4950-4f08-abf4-e14c724e2ce1",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:bab2ae80-8942-4f06-84a4-3a82ba65b210",
+        "GeneratedBy": "urn:910fd52b-fc9e-4525-99f8-715d9edf7896",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
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       },
       {
-        "@id": "urn:cb9ad31a-ff52-4fc0-9e45-c50f04ad7dd1",
+        "@id": "urn:0d1cb971-95db-4b51-b754-8ce32ce31cfd",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:a9b86e5d-509c-4128-917c-3441d311007a",
+        "GeneratedBy": "urn:67468386-08fe-4518-8aff-be434d2e335d",
         "digest": {
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       },
       {
-        "@id": "urn:7d205378-c584-45cd-a840-ce5eb3edceba",
+        "@id": "urn:dabe673f-26fb-4148-95d5-1a8c7138db3e",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:4a27a7a8-d862-4a7d-9875-6f60deecb583",
+        "GeneratedBy": "urn:3591baa3-31c7-47f7-978d-4a5246174400",
         "digest": {
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       {
-        "@id": "urn:2d8c3fda-3c56-479a-9328-deb5fc80e1e9",
+        "@id": "urn:734caeea-8af0-4599-9908-c08308cc9452",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:136d77c7-32b6-4e25-8112-3cb9c4cbdb46",
+        "@id": "urn:ff0506f1-f772-4894-8ec1-48c8ecb4aa6f",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:55e6b3e5-a805-4eab-b31f-f66baccf0633",
+        "GeneratedBy": "urn:32d0c5a2-4cd2-4aff-a9e0-4a0bd2f7e626",
         "digest": {
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diff --git a/examples/from_parsers/afni/afni_clustconn_26_proc_bloc.jsonld b/examples/from_parsers/afni/afni_clustconn_26_proc_bloc.jsonld
index 818dad220..1ec0dba77 100644
--- a/examples/from_parsers/afni/afni_clustconn_26_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_clustconn_26_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "@id": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
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-        "@id": "urn:b60656a1-c732-49cd-8d5b-91fcbe73fe6c",
+        "@id": "urn:189b1f16-0e39-43a0-a97d-ed70d61f5d4e",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_cluster_nn3/tone_counting_onset_times.txt ./afni_cluster_nn3/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:d2fd03b5-32f2-4d3f-9a7e-91a684205c9b",
-          "urn:6beedc47-df31-4025-9be0-977a2f2980fe",
-          "urn:6b976ef1-34cd-4beb-b4df-4d827eb6e8c9"
+          "urn:8897f7fd-b01a-4c54-a01b-8c4dafd7560a",
+          "urn:8b776a89-917e-4216-94da-cadb9a07b265",
+          "urn:21ce6ea2-0d8f-4eaa-be21-880b62c9ab38"
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       {
-        "@id": "urn:6d8411e9-78ea-4f0f-8e71-3fd580eb1c9b",
+        "@id": "urn:a3394f0c-7149-484c-9165-8f15361835c5",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:6a7a3359-9111-448c-8d33-d9e86321c801"
+          "urn:c97ff4a4-ddf7-4077-9c60-e2181964bcf3"
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       {
-        "@id": "urn:7a9b565b-7038-4a86-b762-6b83937ae1b1",
+        "@id": "urn:783b074d-fd7b-4e3f-bc14-df2af149aa0b",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:aee873fe-d817-466b-8d31-98fcb45222d3",
-          "urn:9dbd4acf-480e-4f44-9312-2ba368f1eefb"
+          "urn:0f0dceeb-3d8d-42f8-9caa-67b19b5fe73c",
+          "urn:c7ffaf1c-4c4d-41df-aa43-720bb66c6025"
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       {
-        "@id": "urn:aca19fbd-0414-496a-8e00-ef764f356192",
+        "@id": "urn:251e120d-e2c9-4d1e-8bc2-2e76c724c515",
         "Label": "tshift",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:aee873fe-d817-466b-8d31-98fcb45222d3"
+          "urn:0f0dceeb-3d8d-42f8-9caa-67b19b5fe73c"
         ]
       },
       {
-        "@id": "urn:aa4e8ceb-d7b5-4d6e-b947-dff0bd0fc1a6",
+        "@id": "urn:060115b8-449f-4a4a-8cb5-b5ed45d61f56",
         "Label": "align",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:48605004-13de-4ff6-9ce3-a22c66dbfeef",
-          "urn:40f457bf-fbab-4594-8373-c6a3665036e7"
+          "urn:2100f2d2-fa6a-4e97-9fa9-c324da777313",
+          "urn:684f7ba6-b516-4db0-93e6-b786d6415f9d"
         ]
       },
       {
-        "@id": "urn:4d965562-f225-49a8-990f-91a5c4fe8110",
+        "@id": "urn:f0e1ca2a-5db1-405d-88fd-954cf41a91bf",
         "Label": "tlrc",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:b68a04ce-2150-411b-bc22-d4623ca669ae",
-          "urn:be636df1-e671-4fc0-b305-d3a0366578bf",
-          "urn:02b3cea2-0b28-44c1-844a-f3f9f6b33325"
+          "urn:2e99e19b-0df5-4881-8876-e1601e0de973",
+          "urn:7bface6b-069d-4a87-aa81-28122ab739d9",
+          "urn:888ed4e5-a5a7-4f6d-922a-548574869718"
         ]
       },
       {
-        "@id": "urn:354e747f-12b7-48c2-a27f-7d8d56e137e0",
+        "@id": "urn:1baa48ee-1e56-49ad-96f5-71720a81df53",
         "Label": "volreg",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:97d913aa-b73f-4d76-9c34-a50085ef0573",
-          "urn:97d913aa-b73f-4d76-9c34-a50085ef0573",
-          "urn:02b3cea2-0b28-44c1-844a-f3f9f6b33325",
-          "urn:10441440-f68c-4a5f-b183-f563d2e794c3",
-          "urn:97d913aa-b73f-4d76-9c34-a50085ef0573",
-          "urn:10441440-f68c-4a5f-b183-f563d2e794c3",
-          "urn:3f4994fb-b29d-46be-80da-ba384b45215f",
-          "urn:056d59d8-964b-4d0f-bb91-9a8707d359dc",
-          "urn:045b5f7d-291b-4fa3-9c79-73625dc7cf0c",
-          "urn:f1f79801-0474-444d-9932-f7e5d0d51daf",
-          "urn:3a9caa74-65f8-4212-8dfb-9f6105f65c2c",
-          "urn:6c62078a-2203-4119-9ef8-6f736b6b4888",
-          "urn:10441440-f68c-4a5f-b183-f563d2e794c3",
-          "urn:0d259108-198a-403f-b1d3-bba09529827d"
+          "urn:430aa6bb-c922-45b6-b4c0-41c23d4ae499",
+          "urn:430aa6bb-c922-45b6-b4c0-41c23d4ae499",
+          "urn:888ed4e5-a5a7-4f6d-922a-548574869718",
+          "urn:430aa6bb-c922-45b6-b4c0-41c23d4ae499",
+          "urn:493a1ce5-093b-4e18-9438-ddcd75cb57c4",
+          "urn:493a1ce5-093b-4e18-9438-ddcd75cb57c4",
+          "urn:d0a9229a-d145-4388-8b89-496b9a9266d8",
+          "urn:18db897e-9ced-4b4e-85f6-d3108a8bcbbf",
+          "urn:f269a3d8-4740-47ae-a43d-bbac404ea0a9",
+          "urn:926975f6-7027-49ca-9ee7-dddc5a6ae44f",
+          "urn:58153dd9-1796-4d62-8438-89bb2ba3464b",
+          "urn:d066b14b-96f0-4d46-80c0-11d5d99d23f4",
+          "urn:493a1ce5-093b-4e18-9438-ddcd75cb57c4",
+          "urn:dad513cf-56e3-4d1d-91f9-660d26fd114e"
         ]
       },
       {
-        "@id": "urn:f6c58562-64eb-4875-b481-83d9e0a584b8",
+        "@id": "urn:1c2384c0-5ef1-443d-a5ac-d36f29454823",
         "Label": "blur",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:0cd1409b-fa23-4fa9-b126-4875a72d4205",
-          "urn:15b1634e-9051-43c0-a06f-29a9d5f199c1"
+          "urn:354e747f-12b7-48c2-a27f-7d8d56e137e0",
+          "urn:f6c58562-64eb-4875-b481-83d9e0a584b8"
         ]
       },
       {
-        "@id": "urn:d5decc76-b6af-4d2f-94a6-73be5dbf04a2",
+        "@id": "urn:b00d4ecd-cbf3-4779-a8bf-ad46c28ae579",
         "Label": "mask",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:35a1ea29-a6a9-4480-935b-60a9ed7fb806",
-          "urn:10441440-f68c-4a5f-b183-f563d2e794c3",
-          "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
-          "urn:124643ff-622e-404b-84b0-7cad78f62a3b",
-          "urn:c9a2a664-d761-4a85-b582-3d8cf5cf2c6b",
-          "urn:03fee530-1ea7-404f-a470-3f22a2e8998c",
-          "urn:c9a2a664-d761-4a85-b582-3d8cf5cf2c6b",
-          "urn:03fee530-1ea7-404f-a470-3f22a2e8998c",
-          "urn:731b5cbe-375b-4df1-a95e-9b3980f7cda6",
-          "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
-          "urn:67468386-08fe-4518-8aff-be434d2e335d"
+          "urn:ab849afd-a79f-4ad0-87a2-d2655ba48ea4",
+          "urn:493a1ce5-093b-4e18-9438-ddcd75cb57c4",
+          "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c",
+          "urn:0ec8145c-2d55-45e6-860b-202f2b594933",
+          "urn:151c4564-2b06-42e4-805f-a53e7471f4a6",
+          "urn:efba00c8-2a39-48f4-940b-565cc201efb5",
+          "urn:151c4564-2b06-42e4-805f-a53e7471f4a6",
+          "urn:efba00c8-2a39-48f4-940b-565cc201efb5",
+          "urn:0b206421-73e5-4bf5-8789-644ea60eaf35",
+          "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c",
+          "urn:13b1ec0e-170e-4925-98f7-d951ed4266fa"
         ]
       },
       {
-        "@id": "urn:ab849afd-a79f-4ad0-87a2-d2655ba48ea4",
+        "@id": "urn:3452a9ca-42b6-4997-bcca-cfb7b55db048",
         "Label": "scale",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:35a1ea29-a6a9-4480-935b-60a9ed7fb806",
-          "urn:35a1ea29-a6a9-4480-935b-60a9ed7fb806",
-          "urn:734caeea-8af0-4599-9908-c08308cc9452",
-          "urn:6c62078a-2203-4119-9ef8-6f736b6b4888"
+          "urn:ab849afd-a79f-4ad0-87a2-d2655ba48ea4",
+          "urn:798246d9-8c8f-4fcc-8e7b-ae1753dd7cbd",
+          "urn:ab849afd-a79f-4ad0-87a2-d2655ba48ea4",
+          "urn:d066b14b-96f0-4d46-80c0-11d5d99d23f4"
         ]
       },
       {
-        "@id": "urn:48fe3b0d-bdc4-4e54-b3fd-f7776047617b",
+        "@id": "urn:8e066908-75d0-41b0-a0cf-9685bf3a5785",
         "Label": "regress",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:33d046bd-be2f-4413-a576-ac8b265651df",
-          "urn:33d046bd-be2f-4413-a576-ac8b265651df",
-          "urn:33d046bd-be2f-4413-a576-ac8b265651df",
-          "urn:6e742e55-e63b-4e6d-bc13-35f9f0006065",
-          "urn:6e742e55-e63b-4e6d-bc13-35f9f0006065",
-          "urn:f1f9de70-1d2c-44c4-8ef9-59d0c9a7f575",
-          "urn:f89527ff-6fb9-4848-b83b-87187c2e9d94",
-          "urn:31341309-06dc-46cd-9c02-fa385ae1eec9",
-          "urn:b86e41c0-61e4-4d07-93a0-f9e89005b630",
-          "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
-          "urn:25b87dfc-baa6-4412-be96-835e2fe3ac8c",
-          "urn:dad513cf-56e3-4d1d-91f9-660d26fd114e",
-          "urn:3d9d28f5-4925-4c64-a838-39238a9b91d1",
-          "urn:5582b83e-b803-4011-9d05-9221fe1af3cc",
-          "urn:abbbef99-660a-46ab-b917-207de09017a4",
-          "urn:2cfcc313-2bea-437e-bf9d-6527d3f0031b",
-          "urn:e754d79a-e6e3-4c4f-bbfb-a62a217b6c42",
-          "urn:e754d79a-e6e3-4c4f-bbfb-a62a217b6c42"
+          "urn:420cce07-47c9-4a9c-9f13-ad09c8b3f79d",
+          "urn:420cce07-47c9-4a9c-9f13-ad09c8b3f79d",
+          "urn:420cce07-47c9-4a9c-9f13-ad09c8b3f79d",
+          "urn:ad8c2146-4bbe-408a-a107-9d9ba36aa1ec",
+          "urn:ad8c2146-4bbe-408a-a107-9d9ba36aa1ec",
+          "urn:eff460af-b89a-4118-964b-439f86162e8e",
+          "urn:38bbfab4-7b95-45e4-9ba4-525c395261f2",
+          "urn:02815627-f827-4fe8-9b0e-ca4d9125d0fc",
+          "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c",
+          "urn:c4e51ee7-9fbf-400b-bc74-7153286c3cf4",
+          "urn:4ae6b32f-e8fd-4b05-aec2-42ede6e29f8d",
+          "urn:10fcf5d7-a537-4730-bc72-bf8ef9f51d4c",
+          "urn:14750bd8-418c-4693-a721-60f2611ced60",
+          "urn:1b510de5-8e3c-4462-a2c8-c842c3d06bea",
+          "urn:4fceab9a-bf44-40b9-87c0-a24eaa4d9c83",
+          "urn:b0786995-aa20-4cc1-ba11-56821df58c7e",
+          "urn:ef629af8-b933-4616-a6b8-dde38842024d",
+          "urn:ef629af8-b933-4616-a6b8-dde38842024d"
         ]
       },
       {
-        "@id": "urn:fccae257-53a0-4e24-bc35-37622949ef61",
+        "@id": "urn:a97cc948-6aa2-425a-b953-f1d83ceed350",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
-          "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
-          "urn:11818376-0d68-4f56-9f44-084b77b5f1be"
+          "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c",
+          "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c",
+          "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c"
         ]
       },
       {
-        "@id": "urn:0b85a8dd-c5fa-4f84-bd05-454b4d43f12c",
+        "@id": "urn:d3916b57-f365-4bfd-a882-bb87dce372b4",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:fc3626b4-6d2f-4cba-a554-f53bee1bd2f4",
+        "AssociatedWith": "urn:648cefd6-0ec4-4ae8-b3e5-133f38968b4a",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:d066b14b-96f0-4d46-80c0-11d5d99d23f4"
+          "urn:9d4ba426-e4ef-4863-8c94-1a122c95de90"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:d2fd03b5-32f2-4d3f-9a7e-91a684205c9b",
+        "@id": "urn:8b776a89-917e-4216-94da-cadb9a07b265",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_cluster_nn3/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
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@@ -200,7 +200,7 @@
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@@ -208,34 +208,34 @@
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@@ -243,13 +243,13 @@
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@@ -257,7 +257,7 @@
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@@ -265,25 +265,25 @@
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@@ -291,16 +291,16 @@
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@@ -308,7 +308,7 @@
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@@ -316,16 +316,16 @@
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@@ -333,7 +333,7 @@
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@@ -341,7 +341,7 @@
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@@ -349,16 +349,16 @@
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@@ -366,16 +366,16 @@
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@@ -383,7 +383,7 @@
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@@ -391,7 +391,7 @@
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@@ -399,7 +399,7 @@
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@@ -407,7 +407,7 @@
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@@ -415,7 +415,7 @@
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@@ -423,7 +423,7 @@
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@@ -431,7 +431,7 @@
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@@ -439,97 +439,97 @@
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@@ -537,7 +537,7 @@
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@@ -545,7 +545,7 @@
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-        "@id": "urn:a8049a91-fa7a-4d0e-a79a-facc8c4e7198",
+        "@id": "urn:00ec197b-7caa-4219-af88-50e9f7890b32",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:48fe3b0d-bdc4-4e54-b3fd-f7776047617b",
+        "GeneratedBy": "urn:8e066908-75d0-41b0-a0cf-9685bf3a5785",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:d0a9229a-d145-4388-8b89-496b9a9266d8",
+        "@id": "urn:4385eb5c-9057-44f4-9f34-5bec6fdc03b8",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:48fe3b0d-bdc4-4e54-b3fd-f7776047617b",
+        "GeneratedBy": "urn:8e066908-75d0-41b0-a0cf-9685bf3a5785",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:593d2f6e-3a98-4a39-8179-1c750f45d323",
+        "@id": "urn:fdd87107-f84e-447f-a70c-14e0e7f133dc",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:48fe3b0d-bdc4-4e54-b3fd-f7776047617b",
+        "GeneratedBy": "urn:8e066908-75d0-41b0-a0cf-9685bf3a5785",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:11818376-0d68-4f56-9f44-084b77b5f1be",
+        "@id": "urn:70a9316a-82f0-40ab-b07e-8a3ca3c1177c",
         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
         }
       },
       {
-        "@id": "urn:9139e268-2ca6-40c6-bdc6-28c03a5a7c0f",
+        "@id": "urn:8d921296-88f2-4560-add1-7c6b386a739a",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:fccae257-53a0-4e24-bc35-37622949ef61",
+        "GeneratedBy": "urn:a97cc948-6aa2-425a-b953-f1d83ceed350",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:3e03a31f-e295-40ad-9c53-71fed611ad13",
+        "@id": "urn:9edd7dc8-198e-47f2-97a0-a0c502f60628",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:fccae257-53a0-4e24-bc35-37622949ef61",
+        "GeneratedBy": "urn:a97cc948-6aa2-425a-b953-f1d83ceed350",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:9633cc43-0482-4373-88ab-252f9f6b321d",
+        "@id": "urn:6552ba36-0e4e-49ce-9503-1172a5ba4ac6",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:fccae257-53a0-4e24-bc35-37622949ef61",
+        "GeneratedBy": "urn:a97cc948-6aa2-425a-b953-f1d83ceed350",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:d066b14b-96f0-4d46-80c0-11d5d99d23f4",
+        "@id": "urn:9d4ba426-e4ef-4863-8c94-1a122c95de90",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:be77a2fd-963b-45e9-9362-fcd94388a8d8",
+        "@id": "urn:6f522c1e-c787-422d-9842-4ad8f23ec517",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:0b85a8dd-c5fa-4f84-bd05-454b4d43f12c",
+        "GeneratedBy": "urn:d3916b57-f365-4bfd-a882-bb87dce372b4",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_con_f_proc.jsonld b/examples/from_parsers/afni/afni_con_f_proc.jsonld
index 7f8b935d7..e661007e2 100644
--- a/examples/from_parsers/afni/afni_con_f_proc.jsonld
+++ b/examples/from_parsers/afni/afni_con_f_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "@id": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:c3acf82f-0adc-4874-bd69-b28b507542c7",
+        "@id": "urn:82fea590-f798-46fe-a78f-7601887e0245",
         "Label": "Make directory",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:b5c075e3-f245-4bc9-8cc4-d55eec21091e",
+        "@id": "urn:116e0cb2-5547-433d-9b0a-cd59c277c6b8",
         "Label": "Make directory",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:7cd59bc5-33fb-4897-b2bb-5cfee20798ee",
+        "@id": "urn:0ce32f62-4fc0-42c0-893b-b03f2e4ae488",
         "Label": "cp",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "cp ./afni_f_test/tone_counting_onset_times.txt ./afni_f_test/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:d254e790-3eb0-457a-a728-94483f898737",
-          "urn:1a0a3bff-cc42-4522-8a1b-0ec281a16e51"
+          "urn:732a3588-6036-4290-9585-5aac582dd89e",
+          "urn:fee3ecea-2b2c-433e-bb26-e3e78eea72fd"
         ]
       },
       {
-        "@id": "urn:12748a32-4f2a-4755-966a-c3bf5f628803",
+        "@id": "urn:42f5e934-e5d2-4707-ad09-4dd6a6b280fc",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:7437f41a-5203-4d70-ac17-53d387d4947b"
+          "urn:0f0d8d27-624e-4177-a4ce-0e4655ee2e68"
         ]
       },
       {
-        "@id": "urn:aca48b64-0f58-44c1-bf54-eb7e9089f5b9",
+        "@id": "urn:c405fbed-a681-458f-863a-a4a803fc0543",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:31571f6d-d8ca-4c66-a64a-c2a2a88753d4"
+          "urn:1926242a-0d21-447f-99e9-e5dc8941f48c"
         ]
       },
       {
-        "@id": "urn:7d6a5166-4869-456a-a070-411d9eaf76b3",
+        "@id": "urn:fcf8088f-b2b9-4a81-a7e0-09c6db3b4aed",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:924f0baf-a156-4e39-835b-4b9974948de2"
+          "urn:00aeec77-58fc-409c-a902-c1a79d93c8a9"
         ]
       },
       {
-        "@id": "urn:7a6d6abf-77ee-4c02-a123-ba97020ff74c",
+        "@id": "urn:ebb97d70-b892-4949-9449-97c5864b16ae",
         "Label": "cat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:71f1ade3-2b62-4c18-a187-26d24d3a7f1a"
+          "urn:d5506b4c-ab38-46d9-b17a-0e03a202eac8"
         ]
       },
       {
-        "@id": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
+        "@id": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:924f0baf-a156-4e39-835b-4b9974948de2"
+          "urn:00aeec77-58fc-409c-a902-c1a79d93c8a9"
         ]
       },
       {
-        "@id": "urn:f268d524-4ea7-4ace-aa2e-80e6941b108d",
+        "@id": "urn:bf16fd27-cf3d-4155-9416-ad1c8cbe4fe2",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:a6e50cb0-3790-46cd-97c4-6108afc39afe",
-          "urn:8abe0474-66d5-4e8d-b799-4ca935562832"
+          "urn:49752f72-6a50-440e-abdf-bae073c6dd40",
+          "urn:a899046d-1abd-4476-b24f-bb78675772cd"
         ]
       },
       {
-        "@id": "urn:a05bcc8c-767e-4ef9-ad52-82fdcf352918",
+        "@id": "urn:11ebe6d2-2926-485f-90ea-56154c85bab1",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:9c9633d5-e312-4218-beaf-ee48cdb1b684",
-          "urn:2f2e9df1-ab83-49ff-bf11-f4b440a61b43"
+          "urn:0930ef3d-25ea-478e-a1e5-c90f4ce8d278",
+          "urn:b76ddcb4-bac5-49f8-bccb-e7c55c21b716"
         ]
       },
       {
-        "@id": "urn:e6777837-2f7c-4cb1-ab0f-9ad45c985501",
+        "@id": "urn:1e4a1da0-955c-4597-81e4-87a8bf71b55f",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:8a4b04a5-355c-436b-a9cd-d1ba1623a3de"
+          "urn:da7d2044-3bd8-4f27-88cd-f87a8407fdb0"
         ]
       },
       {
-        "@id": "urn:32ee6bc3-7996-47c5-ba5d-ad3dae831538",
+        "@id": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:0b11c98b-cb04-4ad6-943f-b7e64be5838a"
+          "urn:4206f70c-3207-4464-a93b-1094b5e556ce"
         ]
       },
       {
-        "@id": "urn:a85d6e1c-9519-48a0-9494-5592eb2b8506",
+        "@id": "urn:4d67debf-04bf-4d39-80b4-3bfaafb9bf08",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:0b11c98b-cb04-4ad6-943f-b7e64be5838a"
+          "urn:4206f70c-3207-4464-a93b-1094b5e556ce"
         ]
       },
       {
-        "@id": "urn:8f862f58-0135-443a-84b8-7d315d0751e5",
+        "@id": "urn:e4fd13bd-1c92-4e3b-9674-25ec45487409",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:8a4b04a5-355c-436b-a9cd-d1ba1623a3de"
+          "urn:da7d2044-3bd8-4f27-88cd-f87a8407fdb0"
         ]
       },
       {
-        "@id": "urn:ebb912a3-bf02-4ba8-9363-a5e83909e65a",
+        "@id": "urn:9e9057eb-e197-4c3e-b411-5cc092df19e5",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:7cf453df-7e7b-4f99-8439-7859bdc17e52",
-          "urn:0b11c98b-cb04-4ad6-943f-b7e64be5838a",
-          "urn:dbb688bc-e370-4644-9913-9ae6f2e86ecb"
+          "urn:22a28170-7c0e-4430-b02f-0800d1ecf2a4",
+          "urn:4206f70c-3207-4464-a93b-1094b5e556ce",
+          "urn:57519ad5-a5ee-4b54-95a1-995405cbc897"
         ]
       },
       {
-        "@id": "urn:2aafb6ce-d198-41d6-ab3e-16b28401a64a",
+        "@id": "urn:0807935a-9ab8-477e-8608-b44b647607cf",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:7cf453df-7e7b-4f99-8439-7859bdc17e52",
-          "urn:678f852c-890c-4abc-bf0a-1e737c5189bc",
-          "urn:dbb688bc-e370-4644-9913-9ae6f2e86ecb"
+          "urn:22a28170-7c0e-4430-b02f-0800d1ecf2a4",
+          "urn:57519ad5-a5ee-4b54-95a1-995405cbc897",
+          "urn:6a7c684d-98df-4535-be47-fcf9e2eda67d"
         ]
       },
       {
-        "@id": "urn:8cb47f6b-5181-4500-9572-0906eac7e750",
+        "@id": "urn:6b71e692-ec8f-498f-89dc-fb089f42bacc",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:8c858fbe-04ee-48dc-bab5-c1ae2ef9159c"
+          "urn:8774df07-e4e7-4f9e-b856-8d0b9dadadba"
         ]
       },
       {
-        "@id": "urn:249dda2c-c59c-44e3-9a54-ec97b2d2c422",
+        "@id": "urn:47c2ec0e-da50-49f4-81fc-36c6e5a8251d",
         "Label": "cat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:4eec28c2-77b1-4e2a-b5ad-a4bf544143f9"
+          "urn:07b4df38-c764-4ea2-90d2-4ec7525e4376"
         ]
       },
       {
-        "@id": "urn:1d06d47e-8469-4b81-9404-fbc57017ad23",
+        "@id": "urn:f75b7820-b35b-43ac-9529-7847898e65b0",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:ef4d92a2-528c-4884-9e55-9b6f0f020e18"
+          "urn:01695c88-880b-4165-a6c4-0832f9174f62"
         ]
       },
       {
-        "@id": "urn:906a7e97-4954-4db4-90a8-66b1d76cd022",
+        "@id": "urn:ecd84b96-96f0-4bc4-8120-3aa6ff2454cc",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:5fee107f-6a26-4850-849e-b57806b77df2",
-          "urn:03b235ce-bedb-404b-8ea4-83225a07fb37"
+          "urn:8e1d5762-8fbd-4ff1-a41a-903dfe42bdbd",
+          "urn:e2378519-04e3-4715-84b2-6bc7ea8690bf"
         ]
       },
       {
-        "@id": "urn:46e28345-fd6e-4493-8d14-61325dd2787f",
+        "@id": "urn:fcc1f2b7-e347-48be-9bfa-66d805405da8",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:7cf453df-7e7b-4f99-8439-7859bdc17e52"
+          "urn:22a28170-7c0e-4430-b02f-0800d1ecf2a4"
         ]
       },
       {
-        "@id": "urn:9138c461-25d9-4077-b2c2-acf0e0cef1fd",
+        "@id": "urn:16dfbd17-9e1a-4db2-b261-ed07c3f0dc28",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:63c66930-7e3d-4eee-a6b2-45f96119bb14"
+          "urn:fcd0434b-5af5-4ca3-a091-42d2f7a8f886"
         ]
       },
       {
-        "@id": "urn:9f27626b-b95b-4840-a3d2-3c61d7d614f9",
+        "@id": "urn:2f9bb8f0-6d78-4390-a502-3fcf6741b82c",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:3f99163c-feeb-4ddf-b9a3-98fbe5c4c030",
-          "urn:54de5eb3-f9ac-4833-886e-bf68285dca2b"
+          "urn:4132e44b-e44d-4b8f-b979-894d284c60f2",
+          "urn:ba668017-e912-4946-b252-0bf10dffbfea"
         ]
       },
       {
-        "@id": "urn:8ef8df32-6435-4171-a299-d223d76c6c6e",
+        "@id": "urn:11a19e58-b18a-4068-9317-2e48372cc90a",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:af4526e8-a45d-47d0-9556-d2eccbaa0079"
+          "urn:5d17d672-2c7c-4a90-aa51-7047bdba2a44"
         ]
       },
       {
-        "@id": "urn:5418c0a4-9327-411b-9e4c-8e07ad6b9045",
+        "@id": "urn:afd5f1ae-2faf-4017-bf1b-0e6bf599fdf2",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:5420810d-a31a-49fd-acd7-8b299036cc1f",
+        "@id": "urn:949dab22-814b-4d66-942b-91c6f150c770",
         "Label": "3dresample",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:7cf453df-7e7b-4f99-8439-7859bdc17e52",
-          "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e"
+          "urn:22a28170-7c0e-4430-b02f-0800d1ecf2a4",
+          "urn:fdd6e038-1a52-480c-a86b-a07d58f356ee"
         ]
       },
       {
-        "@id": "urn:b552aaae-f3a6-43f9-a28e-2adaa38edc2c",
+        "@id": "urn:90224fd2-1deb-4b86-8b71-b94bd3664cc2",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:ab91b3fd-d259-4e35-917b-15e7f7eb5390"
+          "urn:422bb061-d84a-4c7c-b975-081f8102361d"
         ]
       },
       {
-        "@id": "urn:98af3652-a864-476a-b2d5-059404150cbd",
+        "@id": "urn:abce3868-1f35-4d6d-ac4e-069f2712654a",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:f4ad58dc-3808-48a2-ab28-b91512eceeb8",
-          "urn:411fd916-e79c-4f17-9215-fa9527d6d1d0"
+          "urn:930ba2ac-0533-40e1-bcdd-f539a8bb6381",
+          "urn:f9c4ecd6-9447-4417-88be-9ee9c8e00364"
         ]
       },
       {
-        "@id": "urn:bdbf17fa-bfef-4bd5-90d8-f02ac4320a78",
+        "@id": "urn:36c7c714-a31d-412a-84ab-3af060136b00",
         "Label": "3ddot",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:f4ad58dc-3808-48a2-ab28-b91512eceeb8",
-          "urn:411fd916-e79c-4f17-9215-fa9527d6d1d0"
+          "urn:930ba2ac-0533-40e1-bcdd-f539a8bb6381",
+          "urn:f9c4ecd6-9447-4417-88be-9ee9c8e00364"
         ]
       },
       {
-        "@id": "urn:99e36abe-ae11-4401-99aa-a5ddc3092b09",
+        "@id": "urn:9fb6f014-2e57-409d-a3c9-c4fca6e17362",
         "Label": "3dresample",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:a2736bdd-b58b-4fd5-b985-64805c68ad20",
-          "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e"
+          "urn:59c7d43f-8ff4-4168-b238-59b4a76e8be2",
+          "urn:fdd6e038-1a52-480c-a86b-a07d58f356ee"
         ]
       },
       {
-        "@id": "urn:8339701c-d6f7-49d6-8d0e-657dc2e062cc",
+        "@id": "urn:ff8f77a8-822e-474e-a600-d65d5ec87e8b",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:92a9d09b-f1f1-45e6-8d0a-7b0bc87efa44"
+          "urn:f8bb27f6-9d25-4ab6-b221-05761b3e5145"
         ]
       },
       {
-        "@id": "urn:ab6737f0-65b9-4811-934c-b7085bad7b9a",
+        "@id": "urn:ebfb1e00-7e6d-44ea-ac4d-9960f3dd8f56",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:af4526e8-a45d-47d0-9556-d2eccbaa0079"
+          "urn:5d17d672-2c7c-4a90-aa51-7047bdba2a44"
         ]
       },
       {
-        "@id": "urn:afd8c04e-b017-4045-92f4-1e118227526f",
+        "@id": "urn:85f41e69-6cd2-4fa0-9487-12aea9824cd2",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:af4526e8-a45d-47d0-9556-d2eccbaa0079",
-          "urn:ad6afb1f-16c3-42d2-b5c1-ed7709d5baf8",
-          "urn:03b235ce-bedb-404b-8ea4-83225a07fb37"
+          "urn:5d17d672-2c7c-4a90-aa51-7047bdba2a44",
+          "urn:63005485-a633-492b-aab2-46783a515b0a",
+          "urn:e2378519-04e3-4715-84b2-6bc7ea8690bf"
         ]
       },
       {
-        "@id": "urn:9df834a4-e7db-4a93-b135-78a21e8af4cf",
+        "@id": "urn:bd1b26cc-9601-4a1a-ae55-1e4eb56f2235",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:df27cd3b-d715-4b02-b53b-a3b58ad15509"
+          "urn:324e098a-3bca-4dee-a253-bc65ca24c92a"
         ]
       },
       {
-        "@id": "urn:a03334c1-a3eb-4f6e-8950-27ed8c34fe59",
+        "@id": "urn:e2af053a-bac8-4264-9fc8-cffdb3b03757",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:df27cd3b-d715-4b02-b53b-a3b58ad15509"
+          "urn:324e098a-3bca-4dee-a253-bc65ca24c92a"
         ]
       },
       {
-        "@id": "urn:03f18f63-6da0-4cef-bc7c-af56235662fa",
+        "@id": "urn:91a2005b-e8a3-446b-8124-414264c29ba2",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:df27cd3b-d715-4b02-b53b-a3b58ad15509"
+          "urn:324e098a-3bca-4dee-a253-bc65ca24c92a"
         ]
       },
       {
-        "@id": "urn:570b107d-2aad-41e1-b0c0-03f7a7ee2734",
+        "@id": "urn:5d581780-9fea-4d4d-a765-d8d540dff86b",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:22967322-3dec-480a-a8aa-40245b9baa07"
+          "urn:0d04acc3-8cda-49f9-abe0-aeafcfd63461"
         ]
       },
       {
-        "@id": "urn:e7f88111-476b-45b1-8905-39d0075e680a",
+        "@id": "urn:65f05a58-c7ca-4108-bde7-cec5e3952521",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:21490073-5880-42a1-a555-78fc1684a71b"
+          "urn:8d47a160-4848-4b69-9041-d15d202a8069"
         ]
       },
       {
-        "@id": "urn:163b9af8-5e45-4b14-a848-3e51cf156e55",
+        "@id": "urn:13031df9-3189-40e2-9cc2-4a682da74984",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:22967322-3dec-480a-a8aa-40245b9baa07"
+          "urn:0d04acc3-8cda-49f9-abe0-aeafcfd63461"
         ]
       },
       {
-        "@id": "urn:8ad2f8c8-b192-4c41-9949-ae52df0c39f4",
+        "@id": "urn:41578a4c-7519-46df-9ddf-eda14e20a647",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:ab283958-f080-464f-ae38-49bb0a5105e6"
+          "urn:0d39f685-e244-438e-97a9-db23ff3af802"
         ]
       },
       {
-        "@id": "urn:8bde6cef-d597-4805-a798-f881ef0ce6da",
+        "@id": "urn:6b4ae610-f0ab-4c5c-95cb-7dae61918885",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:b8ebf28b-6cc9-4040-851b-6784925385f7"
+          "urn:2a408795-ebd3-4029-a8b9-3405eba4bdca"
         ]
       },
       {
-        "@id": "urn:e1e7caef-17a4-4cc0-9292-7012723265a8",
+        "@id": "urn:3a5ec85b-4649-4e66-ae61-3226ead3490b",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:ac846955-fde3-40f9-b985-4b30238f1f1f",
-          "urn:ac56e858-82f0-4ace-90b6-4ac45f773e93",
-          "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e"
+          "urn:22a3f6b3-48f6-4e6b-9396-de9d36478fb9",
+          "urn:3cc19a04-79cd-4981-913b-a18b88d06449",
+          "urn:fdd6e038-1a52-480c-a86b-a07d58f356ee"
         ]
       },
       {
-        "@id": "urn:b4b9ae0b-4c3c-4412-acd1-762a876097d8",
+        "@id": "urn:08f6f5f3-bd9b-44be-9d64-7caad9f19d62",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:b869493c-9952-4578-8ce7-e15a2f6e1c23"
+          "urn:26040560-8893-4c08-835e-2ae7ae40e431"
         ]
       },
       {
-        "@id": "urn:d83ee1fb-1d02-4962-8e9f-a92ff6acfbce",
+        "@id": "urn:cf948276-59de-4443-883a-77d3fc5747a0",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:1f8cef70-8e9f-4bb3-8c27-3bd187ade4d8",
+        "@id": "urn:33552b33-dc97-4793-8385-2a87de22c0a4",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:3f9dfd23-a816-4462-acac-8ed10abe6952"
+          "urn:92adf46f-3cd0-4de7-8939-f18c8392f523"
         ]
       },
       {
-        "@id": "urn:f4557830-1d1e-469c-81b2-ddb6a082d104",
+        "@id": "urn:4f45a00b-727c-40b2-a2c5-5cae947a56a8",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:9c48e073-f43b-4b4e-97d5-2fa117a6f722",
-          "urn:a85ccd3b-21d1-4d8c-b1d7-f8a029ba1691"
+          "urn:5a177f0b-f843-4725-9475-1b1e4ddf5e18",
+          "urn:8a911323-f909-40de-950d-d0cd49e1e599"
         ]
       },
       {
-        "@id": "urn:ade82730-d3ed-45a1-afae-e11011fe74f0",
+        "@id": "urn:b4680683-ecd5-4088-8bc2-63c2d6c6a59b",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:3fa05d1c-5c80-467d-9cae-e31f03718eeb"
+          "urn:035c3970-5a13-491b-a04b-584ca86e8397"
         ]
       },
       {
-        "@id": "urn:2d9cacf2-0c11-4580-8104-b75009019253",
+        "@id": "urn:0935d3f6-d3b7-44a9-877c-9e3cc384b111",
         "Label": "1dcat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:423b51c1-468f-4ff0-bc27-b2433543427f"
+          "urn:5aa6443e-a002-4c17-8478-d18de21fc8b8"
         ]
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       {
-        "@id": "urn:8fe5f818-4814-4ba8-8043-e569fdbc5abc",
+        "@id": "urn:a9fca6d2-d86c-450d-97a9-50415da048a5",
         "Label": "1dcat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:bd0e92e9-9fa3-4e67-a0b9-08f61205ffb0"
+          "urn:d0b03493-daf8-4372-bd90-a7d591ad03a9"
         ]
       },
       {
-        "@id": "urn:abf3d860-d14b-4a7c-932d-87e0d89d9e18",
+        "@id": "urn:ddb15529-6e64-418a-a74b-7a3d384dc0ab",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:a9fb84eb-c0b2-4867-be8d-2b7d8cf6024e"
+          "urn:045781d1-9e75-4834-9b30-4978b76070da"
         ]
       },
       {
-        "@id": "urn:15a17ec9-afcd-4aa6-822c-563cf725d34d",
+        "@id": "urn:3de44cfa-745b-4bfe-8115-0095c9f923ea",
         "Label": "1dcat",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:a9fb84eb-c0b2-4867-be8d-2b7d8cf6024e"
+          "urn:045781d1-9e75-4834-9b30-4978b76070da"
         ]
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       {
-        "@id": "urn:534ae9e5-a369-405d-9cec-98b2f507db07",
+        "@id": "urn:dd40f1be-ca12-46a1-a52d-5d1f764d8b19",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e"
+          "urn:fdd6e038-1a52-480c-a86b-a07d58f356ee"
         ]
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       {
-        "@id": "urn:4850cca1-5789-48af-9d8b-1388f2a13215",
+        "@id": "urn:815e4ca6-6373-4dd2-9391-c5ceca637440",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e"
+          "urn:fdd6e038-1a52-480c-a86b-a07d58f356ee"
         ]
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       {
-        "@id": "urn:eeaa7e7a-8cc7-4bd3-9632-8c53f23db6ea",
+        "@id": "urn:1f0c4c33-4ba6-430e-a3db-3bf7f03cdf13",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e"
+          "urn:fdd6e038-1a52-480c-a86b-a07d58f356ee"
         ]
       },
       {
-        "@id": "urn:ba7d0551-bbd3-4b75-9717-70b3d9d90fb6",
+        "@id": "urn:6ebcc108-fd65-49bb-8a39-6353b906a79c",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:62463505-c485-4705-85f3-47da349c549c"
+          "urn:fe6ace26-ff04-4f79-91bd-71b9d2b0cdea"
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+        "@id": "urn:0fe907b9-525c-451d-b98b-6e4696857b52",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
+        "AssociatedWith": "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
           "-mot_limit": "0.3",
@@ -586,22 +586,22 @@
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-        "@id": "urn:19cea046-4b73-4065-8d07-f2ab4cd05577",
+        "@id": "urn:bef9ed4d-8750-42d6-bf36-1a2484eca02d",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:c3acf82f-0adc-4874-bd69-b28b507542c7",
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+        "@id": "urn:6d1d8579-6a61-4011-b989-95c24e68e879",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:b5c075e3-f245-4bc9-8cc4-d55eec21091e"
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+        "@id": "urn:fee3ecea-2b2c-433e-bb26-e3e78eea72fd",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_f_test/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
         }
       },
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-        "@id": "urn:1a0a3bff-cc42-4522-8a1b-0ec281a16e51",
+        "@id": "urn:732a3588-6036-4290-9585-5aac582dd89e",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_f_test/tone_counting_probe_duration.txt",
         "digest": {
@@ -617,13 +617,13 @@
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-        "@id": "urn:920dddce-28c6-421c-882c-9a68550b6b34",
+        "@id": "urn:5c92426e-803d-4eb0-81de-03f890ca7386",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:7cd59bc5-33fb-4897-b2bb-5cfee20798ee"
+        "GeneratedBy": "urn:0ce32f62-4fc0-42c0-893b-b03f2e4ae488"
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+        "@id": "urn:0f0d8d27-624e-4177-a4ce-0e4655ee2e68",
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@@ -631,13 +631,13 @@
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-        "@id": "urn:a4f12a49-cdd0-4f79-8ec4-1e30561765ee",
+        "@id": "urn:2a3417b9-7227-46c9-a91d-42c5f271dc5f",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:12748a32-4f2a-4755-966a-c3bf5f628803"
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+        "@id": "urn:1926242a-0d21-447f-99e9-e5dc8941f48c",
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         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -645,13 +645,13 @@
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-        "@id": "urn:3f64e75a-698c-4349-9f6a-7bd538d135df",
+        "@id": "urn:f6b2ac4c-0311-49b6-abf0-b0ea89ecab4c",
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         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:aca48b64-0f58-44c1-bf54-eb7e9089f5b9"
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+        "@id": "urn:00aeec77-58fc-409c-a902-c1a79d93c8a9",
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         "digest": {
@@ -659,16 +659,16 @@
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+        "@id": "urn:28047038-52b6-4198-9ecc-50df0c6ad0da",
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         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:7d6a5166-4869-456a-a070-411d9eaf76b3",
+        "GeneratedBy": "urn:fcf8088f-b2b9-4a81-a7e0-09c6db3b4aed",
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+        "@id": "urn:d5506b4c-ab38-46d9-b17a-0e03a202eac8",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
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@@ -676,25 +676,25 @@
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       {
-        "@id": "urn:9d7031f9-b790-4f40-b4db-a36f7f1cdd18",
+        "@id": "urn:ca08e7e4-ce9d-43ff-994b-c2be02f6a9f7",
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         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:7a6d6abf-77ee-4c02-a123-ba97020ff74c",
+        "GeneratedBy": "urn:ebb97d70-b892-4949-9449-97c5864b16ae",
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-        "@id": "urn:d816bf62-f91e-4d89-af7d-9078d2f8bc45",
+        "@id": "urn:3f6420f5-5f28-44a5-a547-f4a55c2d74a1",
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         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
+        "GeneratedBy": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f",
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+        "@id": "urn:a899046d-1abd-4476-b24f-bb78675772cd",
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@@ -702,7 +702,7 @@
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-        "@id": "urn:8abe0474-66d5-4e8d-b799-4ca935562832",
+        "@id": "urn:49752f72-6a50-440e-abdf-bae073c6dd40",
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         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -710,16 +710,16 @@
         }
       },
       {
-        "@id": "urn:247e6f18-0048-4538-afb0-c248e2ba36cf",
+        "@id": "urn:1a0347c5-1103-4187-9fe3-2e53100f089c",
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         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:f268d524-4ea7-4ace-aa2e-80e6941b108d",
+        "GeneratedBy": "urn:bf16fd27-cf3d-4155-9416-ad1c8cbe4fe2",
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+        "@id": "urn:0930ef3d-25ea-478e-a1e5-c90f4ce8d278",
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         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -727,7 +727,7 @@
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-        "@id": "urn:2f2e9df1-ab83-49ff-bf11-f4b440a61b43",
+        "@id": "urn:b76ddcb4-bac5-49f8-bccb-e7c55c21b716",
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@@ -735,7 +735,7 @@
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-        "@id": "urn:8a4b04a5-355c-436b-a9cd-d1ba1623a3de",
+        "@id": "urn:da7d2044-3bd8-4f27-88cd-f87a8407fdb0",
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@@ -743,16 +743,16 @@
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+        "@id": "urn:fcd0434b-5af5-4ca3-a091-42d2f7a8f886",
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         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:e6777837-2f7c-4cb1-ab0f-9ad45c985501",
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@@ -760,34 +760,34 @@
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+        "@id": "urn:592fd391-a562-4f9b-b0be-432c3de0f0a1",
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         "AtLocation": "all_runs.$subj+tlrc\"[$ktrs]\"",
         "digest": {
@@ -1119,16 +1119,16 @@
         }
       },
       {
-        "@id": "urn:7138ee41-a1a7-4e90-8634-1fbd9e69bec4",
+        "@id": "urn:5ae22539-5ee8-41d6-ac9b-8fc06f93b886",
         "Label": "rm.signal.all",
         "AtLocation": "rm.signal.all",
-        "GeneratedBy": "urn:8ad2f8c8-b192-4c41-9949-ae52df0c39f4",
+        "GeneratedBy": "urn:41578a4c-7519-46df-9ddf-eda14e20a647",
         "digest": {
           "sha256": "bda68a16c0afd5e55d4d7415c8c959e61a9aad7898dd456b0f3bb597363dde31"
         }
       },
       {
-        "@id": "urn:b8ebf28b-6cc9-4040-851b-6784925385f7",
+        "@id": "urn:2a408795-ebd3-4029-a8b9-3405eba4bdca",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc\"[$ktrs]\"",
         "digest": {
@@ -1136,16 +1136,16 @@
         }
       },
       {
-        "@id": "urn:302ebdbf-d0d6-4b88-ab41-87f4f06e3912",
+        "@id": "urn:574d3e7d-e246-4b11-965f-aa666574b423",
         "Label": "rm.noise.all",
         "AtLocation": "rm.noise.all",
-        "GeneratedBy": "urn:8bde6cef-d597-4805-a798-f881ef0ce6da",
+        "GeneratedBy": "urn:6b4ae610-f0ab-4c5c-95cb-7dae61918885",
         "digest": {
           "sha256": "431314eb75d086ce08373b3a374427969e89414c4a2d607e449c1f6485c547af"
         }
       },
       {
-        "@id": "urn:ac846955-fde3-40f9-b985-4b30238f1f1f",
+        "@id": "urn:3cc19a04-79cd-4981-913b-a18b88d06449",
         "Label": "rm.signal.all",
         "AtLocation": "rm.signal.all+tlrc",
         "digest": {
@@ -1153,7 +1153,7 @@
         }
       },
       {
-        "@id": "urn:ac56e858-82f0-4ace-90b6-4ac45f773e93",
+        "@id": "urn:22a3f6b3-48f6-4e6b-9396-de9d36478fb9",
         "Label": "rm.noise.all",
         "AtLocation": "rm.noise.all+tlrc",
         "digest": {
@@ -1161,16 +1161,16 @@
         }
       },
       {
-        "@id": "urn:192c4bff-3ba4-420d-b993-ae441786ddcb",
+        "@id": "urn:12a4011c-5111-4324-a57c-19de78c71969",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:e1e7caef-17a4-4cc0-9292-7012723265a8",
+        "GeneratedBy": "urn:3a5ec85b-4649-4e66-ae61-3226ead3490b",
         "digest": {
           "sha256": "303f183145a1e295686c08335d3b70753777cf0fa0b3f9628cf8de5471359a00"
         }
       },
       {
-        "@id": "urn:b869493c-9952-4578-8ce7-e15a2f6e1c23",
+        "@id": "urn:26040560-8893-4c08-835e-2ae7ae40e431",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc",
         "digest": {
@@ -1178,25 +1178,25 @@
         }
       },
       {
-        "@id": "urn:8ddf91f7-79c9-47c1-b563-2ab053ba3d6f",
+        "@id": "urn:60e316e3-5de9-4cf0-a078-e0e086a169c5",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:b4b9ae0b-4c3c-4412-acd1-762a876097d8",
+        "GeneratedBy": "urn:08f6f5f3-bd9b-44be-9d64-7caad9f19d62",
         "digest": {
           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
         }
       },
       {
-        "@id": "urn:a85ccd3b-21d1-4d8c-b1d7-f8a029ba1691",
+        "@id": "urn:8a911323-f909-40de-950d-d0cd49e1e599",
         "Label": "gmean.errts.unit.1D",
         "AtLocation": "gmean.errts.unit.1D",
-        "GeneratedBy": "urn:d83ee1fb-1d02-4962-8e9f-a92ff6acfbce",
+        "GeneratedBy": "urn:cf948276-59de-4443-883a-77d3fc5747a0",
         "digest": {
           "sha256": "a35a66cce2e2d487762823c197ca1edc450a9887f46f125826b69c5021662f95"
         }
       },
       {
-        "@id": "urn:3f9dfd23-a816-4462-acac-8ed10abe6952",
+        "@id": "urn:92adf46f-3cd0-4de7-8939-f18c8392f523",
         "Label": "out.gcor.1D",
         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
       },
       {
-        "@id": "urn:7f7ade72-b18b-4642-b2e1-2a37cf524512",
+        "@id": "urn:88d6bd28-7a69-4044-b46a-836e2f61ccd3",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:1f8cef70-8e9f-4bb3-8c27-3bd187ade4d8",
+        "GeneratedBy": "urn:33552b33-dc97-4793-8385-2a87de22c0a4",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
         }
       },
       {
-        "@id": "urn:9c48e073-f43b-4b4e-97d5-2fa117a6f722",
+        "@id": "urn:5a177f0b-f843-4725-9475-1b1e4ddf5e18",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit+tlrc",
         "digest": {
@@ -1221,16 +1221,16 @@
         }
       },
       {
-        "@id": "urn:cd1fe235-2bbf-4ab7-a1e5-7ac45289c0f8",
+        "@id": "urn:1be6efab-9929-4b1e-8bbc-c165cd38270f",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:f4557830-1d1e-469c-81b2-ddb6a082d104",
+        "GeneratedBy": "urn:4f45a00b-727c-40b2-a2c5-5cae947a56a8",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:3fa05d1c-5c80-467d-9cae-e31f03718eeb",
+        "@id": "urn:035c3970-5a13-491b-a04b-584ca86e8397",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1238,16 +1238,16 @@
         }
       },
       {
-        "@id": "urn:a50be786-02a1-4d07-98a7-c4b1b5d571c2",
+        "@id": "urn:b1ed202d-bf85-425f-adac-b68fb17b5af0",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:ade82730-d3ed-45a1-afae-e11011fe74f0",
+        "GeneratedBy": "urn:b4680683-ecd5-4088-8bc2-63c2d6c6a59b",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:423b51c1-468f-4ff0-bc27-b2433543427f",
+        "@id": "urn:5aa6443e-a002-4c17-8478-d18de21fc8b8",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[3]'",
         "digest": {
@@ -1255,16 +1255,16 @@
         }
       },
       {
-        "@id": "urn:6c66cf06-25fd-4f30-8618-576317a7fc39",
+        "@id": "urn:153b277a-635d-42c0-a884-4bbfa0c6dd1b",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:2d9cacf2-0c11-4580-8104-b75009019253",
+        "GeneratedBy": "urn:0935d3f6-d3b7-44a9-877c-9e3cc384b111",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
         }
       },
       {
-        "@id": "urn:bd0e92e9-9fa3-4e67-a0b9-08f61205ffb0",
+        "@id": "urn:d0b03493-daf8-4372-bd90-a7d591ad03a9",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
         "digest": {
@@ -1272,16 +1272,16 @@
         }
       },
       {
-        "@id": "urn:1fd2f792-3092-4930-93a3-4fc8820a4eae",
+        "@id": "urn:b86ebb2d-75c1-4ea3-a50c-aab763d3bc41",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:8fe5f818-4814-4ba8-8043-e569fdbc5abc",
+        "GeneratedBy": "urn:a9fca6d2-d86c-450d-97a9-50415da048a5",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:a9fb84eb-c0b2-4867-be8d-2b7d8cf6024e",
+        "@id": "urn:045781d1-9e75-4834-9b30-4978b76070da",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:35cbf827-0ceb-4890-ad4e-0f288573fa4b",
+        "@id": "urn:a4c09a62-cb31-4c2b-ba17-d95d8005b33d",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:abf3d860-d14b-4a7c-932d-87e0d89d9e18",
+        "GeneratedBy": "urn:ddb15529-6e64-418a-a74b-7a3d384dc0ab",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:f181808e-4dbc-4126-aea6-621a6c99575d",
+        "@id": "urn:91ed2886-1c20-431d-9c0f-8f3720ffea22",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:15a17ec9-afcd-4aa6-822c-563cf725d34d",
+        "GeneratedBy": "urn:3de44cfa-745b-4bfe-8115-0095c9f923ea",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:d9fdde3f-514e-4357-a7f3-b4be87251abc",
+        "@id": "urn:3f07d54e-e55d-4e7e-bc51-9c2e441a58b3",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:534ae9e5-a369-405d-9cec-98b2f507db07",
+        "GeneratedBy": "urn:dd40f1be-ca12-46a1-a52d-5d1f764d8b19",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:e7244890-3561-4eaa-a5b7-bab4753e00ba",
+        "@id": "urn:50736079-de9a-432b-a2db-79a26b418d57",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:4850cca1-5789-48af-9d8b-1388f2a13215",
+        "GeneratedBy": "urn:815e4ca6-6373-4dd2-9391-c5ceca637440",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:1e958106-7c75-4c73-bb51-14d1b1ea95e1",
+        "@id": "urn:969531e6-8e1f-4881-b5cb-ce83fe7ff1ac",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:eeaa7e7a-8cc7-4bd3-9632-8c53f23db6ea",
+        "GeneratedBy": "urn:1f0c4c33-4ba6-430e-a3db-3bf7f03cdf13",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:62463505-c485-4705-85f3-47da349c549c",
+        "@id": "urn:fe6ace26-ff04-4f79-91bd-71b9d2b0cdea",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:5b19421f-2e2e-4657-9808-10860ffe9d5e",
+        "@id": "urn:689be361-2322-444c-81b5-551d7b16ab70",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:3a451857-6958-4da3-a66e-1f7d914aa9d4",
+        "GeneratedBy": "urn:0fe907b9-525c-451d-b98b-6e4696857b52",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_con_f_proc_bloc.jsonld b/examples/from_parsers/afni/afni_con_f_proc_bloc.jsonld
index 26e303b4a..0aa714c24 100644
--- a/examples/from_parsers/afni/afni_con_f_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_con_f_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "@id": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:eeb424ca-31ff-4ca3-b854-306184f22561",
+        "@id": "urn:3d7bb933-5087-4ff2-b9a2-ce2f598e4bd6",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_f_test/tone_counting_onset_times.txt ./afni_f_test/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:a32b44cb-e1b8-40d6-9c78-3aef16006ef5",
-          "urn:62a6be87-3a93-4a9b-9d61-b7e2d2227a93",
-          "urn:8168ad2f-138b-4b62-99c7-756dbb9cc014"
+          "urn:08e4f79d-ea4f-4d46-ab8d-c778d5bb066c",
+          "urn:49d22c69-9349-492e-b053-62a1b6afa901",
+          "urn:c40149f1-9ffe-4002-923e-896181a14e31"
         ]
       },
       {
-        "@id": "urn:132f3df2-fdac-4638-b3f8-9cd0419c22c1",
+        "@id": "urn:b06f7897-a1fb-4d07-a1da-28a0cb8c1f45",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:4f97bf82-b77c-4170-b662-5007fe79ff6b"
+          "urn:f0a285b6-e50c-4693-a082-9633c0e895d2"
         ]
       },
       {
-        "@id": "urn:b43412a0-0f56-4d67-8a7e-634c25544801",
+        "@id": "urn:8e96504b-4dbe-4a58-95ca-d30dcc106298",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:1a7bf0ee-20cf-41e0-9479-2831210c5957",
-          "urn:9c9b4cb0-4148-4ac9-abec-285cd3234228"
+          "urn:33178c77-5b3e-41fc-aa26-ed92811f912b",
+          "urn:033018b3-4611-4020-a838-513bb1247ebf"
         ]
       },
       {
-        "@id": "urn:1fb66b81-602b-4a6f-8d21-c58996c3dc91",
+        "@id": "urn:fe517862-d1b9-4e3a-b76e-efc0786d0bc7",
         "Label": "tshift",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:1a7bf0ee-20cf-41e0-9479-2831210c5957"
+          "urn:33178c77-5b3e-41fc-aa26-ed92811f912b"
         ]
       },
       {
-        "@id": "urn:9c045eed-e0d8-4752-9f38-b03c8961ba54",
+        "@id": "urn:c8ffc0c2-534a-4b93-b1ca-2e5ab6cc695c",
         "Label": "align",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:3639999c-eed2-4529-b8da-8e2e9ae92a0b",
-          "urn:ea89480e-c072-4df9-a9d5-d7ef51adb5ce"
+          "urn:934935be-608a-4b14-a085-3555a49502b6",
+          "urn:e1b2a3cf-5e2c-46cc-b65d-e2af1525ae24"
         ]
       },
       {
-        "@id": "urn:10c6cdeb-975a-41c9-9aaf-33d0116e2f1a",
+        "@id": "urn:93db0be2-3d8f-4f51-8b91-357d2785f7cd",
         "Label": "tlrc",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:79cdd853-fa0c-45bb-b58a-4fa937a6c46c",
-          "urn:4eedac58-1578-4f7f-a158-576db499125e",
-          "urn:b30575e5-b909-41d7-81b2-1c3b1f00624d"
+          "urn:f2c161b4-1387-4be1-9ce3-ada9ff68a987",
+          "urn:ffe63744-e200-4a3d-ab0a-e0de9bce6565",
+          "urn:5716b79a-8e82-4d72-99ca-9f76d32cd29c"
         ]
       },
       {
-        "@id": "urn:7d9c5fc6-bbe9-46f4-aa91-a071f2605908",
+        "@id": "urn:085cb3e0-27a6-4dc3-bfd1-d70faa299d05",
         "Label": "volreg",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:e6e2b2a3-2877-473a-ac88-37bc4f7b79e6",
-          "urn:e6e2b2a3-2877-473a-ac88-37bc4f7b79e6",
-          "urn:b30575e5-b909-41d7-81b2-1c3b1f00624d",
-          "urn:de3b0abf-5f0c-4836-84f6-bc9644c12c1f",
-          "urn:e6e2b2a3-2877-473a-ac88-37bc4f7b79e6",
-          "urn:de3b0abf-5f0c-4836-84f6-bc9644c12c1f",
-          "urn:3bb92e5b-81c0-493e-8fbe-ba84c36c346d",
-          "urn:bdc69aa0-c3f4-4504-b159-0a00c9e69b56",
-          "urn:3178b117-e8ae-48cc-9e0e-81471311e1f0",
-          "urn:73b145b0-3563-4e20-917c-75277a5481bc",
-          "urn:8b37acbd-590d-4b87-bb5a-0681c734a3d3",
-          "urn:c5f17139-6169-4990-9acd-b6673209beba",
-          "urn:de3b0abf-5f0c-4836-84f6-bc9644c12c1f",
-          "urn:9e5668f5-2b7b-477c-883e-08a7cf7064c7"
+          "urn:f92146da-059f-436e-9761-19148ff8a713",
+          "urn:f92146da-059f-436e-9761-19148ff8a713",
+          "urn:5716b79a-8e82-4d72-99ca-9f76d32cd29c",
+          "urn:e335b461-197f-4383-ba34-1c6e9bde42fe",
+          "urn:f92146da-059f-436e-9761-19148ff8a713",
+          "urn:23b99033-a46e-43f2-a3ab-1c5e95297e0d",
+          "urn:e335b461-197f-4383-ba34-1c6e9bde42fe",
+          "urn:1efd8246-be85-4097-9127-d0bfbd75fdc2",
+          "urn:6f841891-72f5-4d4e-a131-253f4ac569a8",
+          "urn:b8c70f53-b7ac-4987-9c8c-344acef7b7f5",
+          "urn:65b0ba1e-2605-4c33-a061-bbe12d0a744d",
+          "urn:f962b32f-0ab9-4c2b-861a-20ef51f06bed",
+          "urn:e335b461-197f-4383-ba34-1c6e9bde42fe",
+          "urn:9fc0d954-4735-442b-ae00-bdb679132ef0"
         ]
       },
       {
-        "@id": "urn:8c1d797a-e34c-4dd4-824a-c86c07724873",
+        "@id": "urn:168438fa-0542-4538-ad21-d12412acbd5e",
         "Label": "blur",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:6fd64536-641a-413b-8d77-390f0514fea8",
-          "urn:598ab807-45ed-4acf-a417-d0bcb23a4959"
+          "urn:4a70628a-6a31-428b-900c-5b0adc7fd6d2",
+          "urn:e2f7dab3-3815-40a2-80a3-31469ef2bd0b"
         ]
       },
       {
-        "@id": "urn:b41be70e-3eba-42fd-92e5-4df0444a18d4",
+        "@id": "urn:4164d714-de46-441d-9547-155ad3215532",
         "Label": "mask",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:b60f8029-dace-4def-b134-96c533ed2469",
-          "urn:de3b0abf-5f0c-4836-84f6-bc9644c12c1f",
-          "urn:9381c42a-f942-49f3-bcf2-577fbb62b05c",
-          "urn:fc4f2b90-f6c6-410a-a8ff-78d8206b5df0",
-          "urn:5d73a76e-4df1-4fd3-a040-769dac5ac08d",
-          "urn:cf41eab2-9285-40e8-ac6d-f47cd151abb4",
-          "urn:5d73a76e-4df1-4fd3-a040-769dac5ac08d",
-          "urn:cf41eab2-9285-40e8-ac6d-f47cd151abb4",
-          "urn:1513ce1b-68ad-4e5e-bc6f-67d41158cf03",
-          "urn:9381c42a-f942-49f3-bcf2-577fbb62b05c",
-          "urn:cbb044da-cc8b-4ef7-977c-2c3794c9027a"
+          "urn:7fb86442-2d63-437f-8793-4c6a0429e57b",
+          "urn:47031f64-a274-4a73-811a-f6b843981956",
+          "urn:e335b461-197f-4383-ba34-1c6e9bde42fe",
+          "urn:338b803b-badc-4a28-a1fe-96893345cd2b",
+          "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+          "urn:34583576-5b25-413c-887e-259f2c281441",
+          "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+          "urn:34583576-5b25-413c-887e-259f2c281441",
+          "urn:2c613c87-e382-4a3e-931f-f58e2f93f0db",
+          "urn:47031f64-a274-4a73-811a-f6b843981956",
+          "urn:fd8651b8-73db-4e11-9007-4c85639d8cde"
         ]
       },
       {
-        "@id": "urn:7a4a12d7-5a06-4bdf-8fd7-293ac5d81594",
+        "@id": "urn:4b99f7af-3b64-4174-ac3f-cccc60966174",
         "Label": "scale",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:b60f8029-dace-4def-b134-96c533ed2469",
-          "urn:b60f8029-dace-4def-b134-96c533ed2469",
-          "urn:5c5397d3-55c6-4311-aa95-59d746473bec",
-          "urn:c5f17139-6169-4990-9acd-b6673209beba"
+          "urn:7fb86442-2d63-437f-8793-4c6a0429e57b",
+          "urn:7fb86442-2d63-437f-8793-4c6a0429e57b",
+          "urn:cea9a42a-f937-414b-8456-cbaafbf7e172",
+          "urn:f962b32f-0ab9-4c2b-861a-20ef51f06bed"
         ]
       },
       {
-        "@id": "urn:ac3714cf-12be-4dc0-9fcb-85e5d0bbd814",
+        "@id": "urn:2469313f-e73c-4430-b921-9e236467ff0b",
         "Label": "regress",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:ecd7913d-2d7a-454b-a4e9-4c3500333405",
-          "urn:ecd7913d-2d7a-454b-a4e9-4c3500333405",
-          "urn:ecd7913d-2d7a-454b-a4e9-4c3500333405",
-          "urn:6f086e2c-b943-4856-a4e4-b79e5ce78fb0",
-          "urn:6f086e2c-b943-4856-a4e4-b79e5ce78fb0",
-          "urn:23be68f7-c7f8-4eb2-b641-133be843e323",
-          "urn:11f7d34b-6364-461b-af8e-ce7c7f9de369",
-          "urn:66375eb5-3649-457d-a56b-f5e53f3e3cf7",
-          "urn:18b0a656-3c03-498e-b5c1-fa41f1592e42",
-          "urn:9381c42a-f942-49f3-bcf2-577fbb62b05c",
-          "urn:6dd32c60-529c-4e5e-b6d5-67ab04a4796f",
-          "urn:cc69fc0d-25e0-46fe-8712-4370967c20e5",
-          "urn:89d72914-4200-41f9-a756-1f0024506f14",
-          "urn:4abe4996-f2c8-41cc-8561-e4ae6c3e9474",
-          "urn:fd12a58d-0911-428a-9049-3519c84b23d6",
-          "urn:55b47535-6244-4008-b24c-b417f36f1a07",
-          "urn:da9be219-1e1c-469d-9def-a0f6c1cd679f",
-          "urn:da9be219-1e1c-469d-9def-a0f6c1cd679f"
+          "urn:94aaf97a-23d3-4684-b9e1-40299faf81ee",
+          "urn:94aaf97a-23d3-4684-b9e1-40299faf81ee",
+          "urn:94aaf97a-23d3-4684-b9e1-40299faf81ee",
+          "urn:0f745c76-0f78-49c5-8ff9-bccd8ba53898",
+          "urn:0f745c76-0f78-49c5-8ff9-bccd8ba53898",
+          "urn:3ac68a81-17d1-4bb2-aabc-08c6e5f5247c",
+          "urn:196062b9-4d14-4f30-9fc2-44a5b79b8ce4",
+          "urn:47031f64-a274-4a73-811a-f6b843981956",
+          "urn:822d23a6-e31f-4857-94e7-1096567473c5",
+          "urn:9db9310b-c431-471f-885f-4d92835f3e88",
+          "urn:d20e29c0-ba83-4cab-882c-d2f2795b702c",
+          "urn:6b970f51-83db-4286-9ac6-f0639095e34d",
+          "urn:d7059659-eda4-459d-a116-80bc35f12d1f",
+          "urn:8e5ab35a-7669-4e51-adee-3f7e416010f6",
+          "urn:eff9d632-d6e4-4d8e-a8e9-a9ae05f988c6",
+          "urn:65939ac7-7a7a-472d-9da3-5f4823ee8d5b",
+          "urn:1f03bef8-16e4-416d-a833-11890da768d2",
+          "urn:1f03bef8-16e4-416d-a833-11890da768d2"
         ]
       },
       {
-        "@id": "urn:a5544002-4cbd-4868-b71c-6e0c24c19d43",
+        "@id": "urn:96b36d9b-c550-4dcc-a426-16925826d22d",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:9381c42a-f942-49f3-bcf2-577fbb62b05c",
-          "urn:9381c42a-f942-49f3-bcf2-577fbb62b05c",
-          "urn:9381c42a-f942-49f3-bcf2-577fbb62b05c"
+          "urn:47031f64-a274-4a73-811a-f6b843981956",
+          "urn:47031f64-a274-4a73-811a-f6b843981956",
+          "urn:47031f64-a274-4a73-811a-f6b843981956"
         ]
       },
       {
-        "@id": "urn:998766df-e6b7-4f78-9b68-f4ee34f913b1",
+        "@id": "urn:c533bcb1-7df7-4882-b3f7-025f83a992c9",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
+        "AssociatedWith": "urn:93043d20-67f9-40c3-8a9b-e016f761f4fb",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:829059e7-40d3-402e-acd7-52ce046b7263"
+          "urn:3eb5da97-d971-4bbb-9201-355ab81379c0"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:a32b44cb-e1b8-40d6-9c78-3aef16006ef5",
+        "@id": "urn:49d22c69-9349-492e-b053-62a1b6afa901",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_f_test/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:62a6be87-3a93-4a9b-9d61-b7e2d2227a93",
+        "@id": "urn:08e4f79d-ea4f-4d46-ab8d-c778d5bb066c",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_f_test/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:8168ad2f-138b-4b62-99c7-756dbb9cc014",
+        "@id": "urn:c40149f1-9ffe-4002-923e-896181a14e31",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:beea476d-58dd-45cc-a764-e9783a02c98e",
+        "@id": "urn:c77d7191-0804-496c-b902-abaed4fcf96c",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:eeb424ca-31ff-4ca3-b854-306184f22561",
+        "GeneratedBy": "urn:3d7bb933-5087-4ff2-b9a2-ce2f598e4bd6",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:e1ce9fe6-0fdc-4973-bdb9-eb0e5bcbea6e",
+        "@id": "urn:7ac1a591-3185-4ce8-9d34-f3bf695c0fa7",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:eeb424ca-31ff-4ca3-b854-306184f22561"
+        "GeneratedBy": "urn:3d7bb933-5087-4ff2-b9a2-ce2f598e4bd6"
       },
       {
-        "@id": "urn:2e269bf3-ecc6-4bfd-b04c-ddb690e70fdb",
+        "@id": "urn:7dcd3f5a-55fd-4255-b6b0-28e323804813",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:eeb424ca-31ff-4ca3-b854-306184f22561"
+        "GeneratedBy": "urn:3d7bb933-5087-4ff2-b9a2-ce2f598e4bd6"
       },
       {
-        "@id": "urn:72a0b816-a755-4ffc-907d-3aa43568e48f",
+        "@id": "urn:3629b3b4-6e9a-417f-9924-ee2d75ed4331",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:eeb424ca-31ff-4ca3-b854-306184f22561"
+        "GeneratedBy": "urn:3d7bb933-5087-4ff2-b9a2-ce2f598e4bd6"
       },
       {
-        "@id": "urn:4f97bf82-b77c-4170-b662-5007fe79ff6b",
+        "@id": "urn:f0a285b6-e50c-4693-a082-9633c0e895d2",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
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@@ -257,7 +257,7 @@
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@@ -265,25 +265,25 @@
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@@ -291,16 +291,16 @@
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@@ -308,7 +308,7 @@
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@@ -316,16 +316,16 @@
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@@ -333,7 +333,7 @@
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@@ -341,7 +341,7 @@
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@@ -349,16 +349,16 @@
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@@ -366,16 +366,16 @@
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@@ -383,7 +383,7 @@
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@@ -391,7 +391,7 @@
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@@ -399,7 +399,7 @@
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@@ -407,7 +407,7 @@
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@@ -415,7 +415,7 @@
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@@ -423,7 +423,7 @@
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@@ -431,7 +431,7 @@
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@@ -439,97 +439,97 @@
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@@ -537,7 +537,7 @@
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@@ -545,7 +545,7 @@
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@@ -553,7 +553,7 @@
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@@ -561,7 +561,7 @@
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@@ -569,7 +569,7 @@
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@@ -577,7 +577,7 @@
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@@ -585,7 +585,7 @@
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@@ -593,7 +593,7 @@
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@@ -601,7 +601,7 @@
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@@ -609,61 +609,61 @@
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+        "@id": "urn:cb2d5117-8e60-42fb-b3fa-2c5ac0a124b9",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:a5544002-4cbd-4868-b71c-6e0c24c19d43",
+        "GeneratedBy": "urn:96b36d9b-c550-4dcc-a426-16925826d22d",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:829059e7-40d3-402e-acd7-52ce046b7263",
+        "@id": "urn:3eb5da97-d971-4bbb-9201-355ab81379c0",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:81bdbe32-8fd2-4c86-ad90-d75314e52071",
+        "@id": "urn:871357d3-daa5-41ea-8e66-ab66204d439e",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:998766df-e6b7-4f78-9b68-f4ee34f913b1",
+        "GeneratedBy": "urn:c533bcb1-7df7-4882-b3f7-025f83a992c9",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_default_proc.jsonld b/examples/from_parsers/afni/afni_default_proc.jsonld
index bb7bc97d1..82d161c53 100644
--- a/examples/from_parsers/afni/afni_default_proc.jsonld
+++ b/examples/from_parsers/afni/afni_default_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "@id": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:768bdff7-fc79-48ed-b4be-76ffa67c22a7",
+        "@id": "urn:d458c54d-3dc8-4d05-8d6f-66f9f1a1f8ec",
         "Label": "Make directory",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:03dc0426-616f-474d-baa7-d076a27da8f9",
+        "@id": "urn:8c858fbe-04ee-48dc-bab5-c1ae2ef9159c",
         "Label": "Make directory",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:682174ce-71d8-497c-a179-f0b800788bb7",
+        "@id": "urn:249dda2c-c59c-44e3-9a54-ec97b2d2c422",
         "Label": "cp",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "cp ./afni_voxelwise_p0001/tone_counting_onset_times.txt ./afni_voxelwise_p0001/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:efedbec8-04bc-46cb-b396-0ba5ad3d910a",
-          "urn:0a6fbff3-07bf-42fa-a99d-6fafd73ac089"
+          "urn:4eec28c2-77b1-4e2a-b5ad-a4bf544143f9",
+          "urn:df27cd3b-d715-4b02-b53b-a3b58ad15509"
         ]
       },
       {
-        "@id": "urn:fb106cb1-fa61-4956-bd0a-3929d8b94354",
+        "@id": "urn:ef4d92a2-528c-4884-9e55-9b6f0f020e18",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcopy ./afni_voxelwise_p0001/sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:ca497e60-981f-473b-acd0-38e3b7c2067a"
+          "urn:cb1c0160-0e2f-4a93-b70f-8f61530cdb27"
         ]
       },
       {
-        "@id": "urn:38ea2ea2-f085-4e72-9a11-8b81a426d4da",
+        "@id": "urn:5fee107f-6a26-4850-849e-b57806b77df2",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_voxelwise_p0001/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:b7b049f4-fa84-443d-bd23-cd4cbc67b736"
+          "urn:03b235ce-bedb-404b-8ea4-83225a07fb37"
         ]
       },
       {
-        "@id": "urn:e4fff7da-26ea-4221-bc58-8c8d6b7ca84f",
+        "@id": "urn:46e28345-fd6e-4493-8d14-61325dd2787f",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:1dbc03de-284a-4cbb-834e-9ec6a25791a0"
+          "urn:0bb5d0b3-84fd-4dd6-86ca-6e39ee7c9ca2"
         ]
       },
       {
-        "@id": "urn:88774907-0d85-47ff-a700-e37b59c8ffcb",
+        "@id": "urn:9138c461-25d9-4077-b2c2-acf0e0cef1fd",
         "Label": "cat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:835ac5af-9eea-4ef7-9bdc-ea0fa543a819"
+          "urn:30a127a0-5da6-41e9-b18f-b0d0213d8bad"
         ]
       },
       {
-        "@id": "urn:9c3526b4-b784-4300-968c-fc5b10e380a8",
+        "@id": "urn:9f27626b-b95b-4840-a3d2-3c61d7d614f9",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:1dbc03de-284a-4cbb-834e-9ec6a25791a0"
+          "urn:0bb5d0b3-84fd-4dd6-86ca-6e39ee7c9ca2"
         ]
       },
       {
-        "@id": "urn:3171bb22-275c-48a9-b96d-e7300d4c194a",
+        "@id": "urn:8ef8df32-6435-4171-a299-d223d76c6c6e",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:d130b0aa-0565-4af9-9055-3f6733ece33d",
-          "urn:9365d298-c58e-4d85-89eb-b035a0a2db37"
+          "urn:a3f63c7e-f657-4071-82d5-23c6f12857a3",
+          "urn:af4526e8-a45d-47d0-9556-d2eccbaa0079"
         ]
       },
       {
-        "@id": "urn:2be6debc-12a1-4190-9b50-9aa4d972bc30",
+        "@id": "urn:0a6241b6-2152-4e5b-8113-cc6c69d9197b",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:b1993396-80d7-421e-9034-9c4e853fc3af",
-          "urn:e3c78c58-4927-4458-b6a5-a0f7b70e3051"
+          "urn:3a301cd9-25da-471b-8223-bad090c7347d",
+          "urn:5420810d-a31a-49fd-acd7-8b299036cc1f"
         ]
       },
       {
-        "@id": "urn:64aaaf3b-4f76-4f27-a079-b66006c759b1",
+        "@id": "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:73c58698-91b1-4c9c-acbe-4e8dfa0baf93"
+          "urn:701df0dc-45e0-40bd-9782-a2e4d6b55efa"
         ]
       },
       {
-        "@id": "urn:9c0f6952-8770-4a4e-b180-052debb7b271",
+        "@id": "urn:ab91b3fd-d259-4e35-917b-15e7f7eb5390",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:e87352cf-8f22-4cbb-8087-9676bac3f385"
+          "urn:652558c1-a31d-4c8a-a9c3-822ea694f3d3"
         ]
       },
       {
-        "@id": "urn:c3352e3a-ea37-483e-b2b1-280dca36a952",
+        "@id": "urn:f4ad58dc-3808-48a2-ab28-b91512eceeb8",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:e87352cf-8f22-4cbb-8087-9676bac3f385"
+          "urn:652558c1-a31d-4c8a-a9c3-822ea694f3d3"
         ]
       },
       {
-        "@id": "urn:4c2f5457-5e29-4350-a2e1-dac8ecfa35c9",
+        "@id": "urn:b1cc91c7-f921-41c1-8be7-392416eeeb13",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:73c58698-91b1-4c9c-acbe-4e8dfa0baf93"
+          "urn:701df0dc-45e0-40bd-9782-a2e4d6b55efa"
         ]
       },
       {
-        "@id": "urn:01ea16dd-67a3-468a-a252-b8a86d38be4a",
+        "@id": "urn:a2736bdd-b58b-4fd5-b985-64805c68ad20",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:3dea5b32-a6d3-4561-93c2-9c2bd9440596",
-          "urn:e87352cf-8f22-4cbb-8087-9676bac3f385",
-          "urn:eea4fd33-05eb-45c5-b022-11c629c9ab6f"
+          "urn:652558c1-a31d-4c8a-a9c3-822ea694f3d3",
+          "urn:99e36abe-ae11-4401-99aa-a5ddc3092b09",
+          "urn:fa33f60b-37bd-4d5b-b7a2-d803058269e0"
         ]
       },
       {
-        "@id": "urn:c1ce2e28-1499-4c87-8b18-6aa1b859c620",
+        "@id": "urn:3b503358-3e90-4650-ba12-fa5787079082",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:3dea5b32-a6d3-4561-93c2-9c2bd9440596",
-          "urn:46953106-4e01-4407-a4a6-3f757a89965b",
-          "urn:eea4fd33-05eb-45c5-b022-11c629c9ab6f"
+          "urn:99e36abe-ae11-4401-99aa-a5ddc3092b09",
+          "urn:9fb1321c-e5fc-4d51-bbaf-b8c047d3ac80",
+          "urn:fa33f60b-37bd-4d5b-b7a2-d803058269e0"
         ]
       },
       {
-        "@id": "urn:a7f4c949-e33a-47c0-936e-17a33bbe797b",
+        "@id": "urn:fec2d381-36fb-4e79-af50-fb87c41fb116",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:0ff95592-e05d-4465-84d2-4755ce6e3121"
+          "urn:ad6afb1f-16c3-42d2-b5c1-ed7709d5baf8"
         ]
       },
       {
-        "@id": "urn:3db3351e-810d-4ab8-beca-d7de5a696f13",
+        "@id": "urn:2d6bc1b8-06a4-44f4-a749-6e56f1afb928",
         "Label": "cat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:8c8d4609-f20f-49da-ac41-b1fdfab6067c"
+          "urn:9df834a4-e7db-4a93-b135-78a21e8af4cf"
         ]
       },
       {
-        "@id": "urn:af9b0233-5698-428b-ae17-9346c8c597a3",
+        "@id": "urn:9f0418c9-37e3-442e-9c7e-546a9ca91950",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:5bed2526-c418-4531-8f5c-210a4c2044b2"
+          "urn:a03334c1-a3eb-4f6e-8950-27ed8c34fe59"
         ]
       },
       {
-        "@id": "urn:59a04790-c3a4-41d1-b2eb-268899fbfc53",
+        "@id": "urn:bb9d4908-d26a-4fc3-a20b-7397089067ff",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:b7d85a37-7161-4b8b-8d00-a9248190fda3",
-          "urn:2b0afdd2-8abd-4f81-8748-cecd12c9987f"
+          "urn:03f18f63-6da0-4cef-bc7c-af56235662fa",
+          "urn:f22d3031-ad76-4284-a165-40cc1f7e75b2"
         ]
       },
       {
-        "@id": "urn:c122b76b-49dd-4080-9464-c17425a84159",
+        "@id": "urn:22967322-3dec-480a-a8aa-40245b9baa07",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:3dea5b32-a6d3-4561-93c2-9c2bd9440596"
+          "urn:fa33f60b-37bd-4d5b-b7a2-d803058269e0"
         ]
       },
       {
-        "@id": "urn:a53f3efb-78d9-4ff0-b2c3-4ac3e36ff6ef",
+        "@id": "urn:e8e9e392-b899-461a-8588-64440b803a57",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:deaf5c0e-1599-499f-bb03-f61d26803be5"
+          "urn:b552aaae-f3a6-43f9-a28e-2adaa38edc2c"
         ]
       },
       {
-        "@id": "urn:ab6f0993-5b04-419b-b373-e7d235e9e740",
+        "@id": "urn:f3da51a8-5835-48b7-b300-aa60d22b491a",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:2a627ccb-2b5e-4427-8fef-388a1db6a555",
-          "urn:487c72a9-6acb-41f0-b6c3-b7ab2043a5b4"
+          "urn:8ad2f8c8-b192-4c41-9949-ae52df0c39f4",
+          "urn:ab283958-f080-464f-ae38-49bb0a5105e6"
         ]
       },
       {
-        "@id": "urn:f0832953-3f73-48a7-8fe2-1b48270b2cd4",
+        "@id": "urn:7138ee41-a1a7-4e90-8634-1fbd9e69bec4",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:7a17faa4-3ab2-4c80-9222-973582ab9023"
+          "urn:8bde6cef-d597-4805-a798-f881ef0ce6da"
         ]
       },
       {
-        "@id": "urn:d7d53e37-2e1e-421a-bf26-c23e78eac0fe",
+        "@id": "urn:302ebdbf-d0d6-4b88-ab41-87f4f06e3912",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:c096c03f-c432-46db-905d-5012d624a850",
+        "@id": "urn:ac846955-fde3-40f9-b985-4b30238f1f1f",
         "Label": "3dresample",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:3dea5b32-a6d3-4561-93c2-9c2bd9440596",
-          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
+          "urn:0251ee81-099a-4ebc-98ce-451c65834a94",
+          "urn:fa33f60b-37bd-4d5b-b7a2-d803058269e0"
         ]
       },
       {
-        "@id": "urn:ee1865c2-68cc-4fd3-8767-5b9488363617",
+        "@id": "urn:b4b9ae0b-4c3c-4412-acd1-762a876097d8",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:1d965db1-c424-4236-9d86-cd4a7939aad7"
+          "urn:b869493c-9952-4578-8ce7-e15a2f6e1c23"
         ]
       },
       {
-        "@id": "urn:2ed3ab6c-8c7d-421f-b06f-a8f6fc205cab",
+        "@id": "urn:d83ee1fb-1d02-4962-8e9f-a92ff6acfbce",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:9f4bb0cf-d032-467e-ba07-b8a64af8e023",
-          "urn:ccc86f3b-621d-42b8-9fa0-b8df15f2fc1f"
+          "urn:1f8cef70-8e9f-4bb3-8c27-3bd187ade4d8",
+          "urn:a85ccd3b-21d1-4d8c-b1d7-f8a029ba1691"
         ]
       },
       {
-        "@id": "urn:d01f6cb7-895c-4263-9c4f-66641a6521d4",
+        "@id": "urn:3f9dfd23-a816-4462-acac-8ed10abe6952",
         "Label": "3ddot",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:9f4bb0cf-d032-467e-ba07-b8a64af8e023",
-          "urn:ccc86f3b-621d-42b8-9fa0-b8df15f2fc1f"
+          "urn:1f8cef70-8e9f-4bb3-8c27-3bd187ade4d8",
+          "urn:a85ccd3b-21d1-4d8c-b1d7-f8a029ba1691"
         ]
       },
       {
-        "@id": "urn:a1ae76b6-98c6-405b-aadb-5898c973ad78",
+        "@id": "urn:9c48e073-f43b-4b4e-97d5-2fa117a6f722",
         "Label": "3dresample",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:7ec5b7a4-7374-4686-b27c-81a58c3b3e98",
-          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
+          "urn:0251ee81-099a-4ebc-98ce-451c65834a94",
+          "urn:5248fb52-7e25-4dcf-90d6-feb14056d454"
         ]
       },
       {
-        "@id": "urn:38c05196-6be2-4e4e-a4f1-0ec7328be2dd",
+        "@id": "urn:3fa05d1c-5c80-467d-9cae-e31f03718eeb",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:b889cc5f-d33a-4375-9707-5241f6701604"
+          "urn:a50be786-02a1-4d07-98a7-c4b1b5d571c2"
         ]
       },
       {
-        "@id": "urn:e4549dc8-e7dc-4d2d-a4fc-5aef29e6af69",
+        "@id": "urn:423b51c1-468f-4ff0-bc27-b2433543427f",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:7a17faa4-3ab2-4c80-9222-973582ab9023"
+          "urn:8bde6cef-d597-4805-a798-f881ef0ce6da"
         ]
       },
       {
-        "@id": "urn:94c531f1-e0a2-45a2-955c-3c5e0fc00c59",
+        "@id": "urn:bd0e92e9-9fa3-4e67-a0b9-08f61205ffb0",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:7a17faa4-3ab2-4c80-9222-973582ab9023",
-          "urn:70bfd749-6110-4cc8-8de4-e88be8987dd8",
-          "urn:2b0afdd2-8abd-4f81-8748-cecd12c9987f"
+          "urn:8bde6cef-d597-4805-a798-f881ef0ce6da",
+          "urn:abf3d860-d14b-4a7c-932d-87e0d89d9e18",
+          "urn:f22d3031-ad76-4284-a165-40cc1f7e75b2"
         ]
       },
       {
-        "@id": "urn:f7465d5c-46f7-490e-a5a2-08d59b567b0d",
+        "@id": "urn:15a17ec9-afcd-4aa6-822c-563cf725d34d",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:1b733724-c865-41c8-a4b3-89ec4e7bf1b6"
+          "urn:8e51b296-a8ad-4c3e-bfc3-297ae5ebdc88"
         ]
       },
       {
-        "@id": "urn:1f446a54-dba5-425b-95ef-552dba8677b7",
+        "@id": "urn:534ae9e5-a369-405d-9cec-98b2f507db07",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:1b733724-c865-41c8-a4b3-89ec4e7bf1b6"
+          "urn:8e51b296-a8ad-4c3e-bfc3-297ae5ebdc88"
         ]
       },
       {
-        "@id": "urn:b8d7c546-8d76-4977-902e-54a5f98165f9",
+        "@id": "urn:4850cca1-5789-48af-9d8b-1388f2a13215",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:1b733724-c865-41c8-a4b3-89ec4e7bf1b6"
+          "urn:8e51b296-a8ad-4c3e-bfc3-297ae5ebdc88"
         ]
       },
       {
-        "@id": "urn:0e24554b-322d-4be9-87cd-9dd642325442",
+        "@id": "urn:e7244890-3561-4eaa-a5b7-bab4753e00ba",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:f4f108d9-ad44-4f62-bef2-0214e3e76d69"
+          "urn:eeaa7e7a-8cc7-4bd3-9632-8c53f23db6ea"
         ]
       },
       {
-        "@id": "urn:5b10beae-c90a-4bd3-801e-3bba870ee006",
+        "@id": "urn:1e958106-7c75-4c73-bb51-14d1b1ea95e1",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:ed8e6d73-f02f-417f-86a2-619df64156ac"
+          "urn:7092bcca-8a5c-4618-bc2f-d5ece8e076b5"
         ]
       },
       {
-        "@id": "urn:d2b88a58-b171-48dd-9b24-909c0df5133d",
+        "@id": "urn:62463505-c485-4705-85f3-47da349c549c",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:f4f108d9-ad44-4f62-bef2-0214e3e76d69"
+          "urn:eeaa7e7a-8cc7-4bd3-9632-8c53f23db6ea"
         ]
       },
       {
-        "@id": "urn:cda76e9d-1eab-41a7-bee3-e5b36b858062",
+        "@id": "urn:70850153-4e6b-43fd-99b1-318d93e70b80",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:640954dc-d4ca-4c56-90d3-79b557b615c6"
+          "urn:45fea0a2-13f6-4b49-bc0d-e67393412164"
         ]
       },
       {
-        "@id": "urn:1a741297-35d4-4b05-886b-1d1e8c91bf2e",
+        "@id": "urn:6d1cd561-140c-46bc-b4f0-91480b25aad3",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:b5ed0dcb-6f8b-4f0b-972e-0d08e249d112"
+          "urn:e1ce9fe6-0fdc-4973-bdb9-eb0e5bcbea6e"
         ]
       },
       {
-        "@id": "urn:bf004824-b637-4840-942f-369d36e3837e",
+        "@id": "urn:a32b44cb-e1b8-40d6-9c78-3aef16006ef5",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:2e0e52f8-04a3-4102-b205-304afb4b5f2e",
-          "urn:39022742-83e8-4de3-85de-35824e023294",
-          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
+          "urn:0251ee81-099a-4ebc-98ce-451c65834a94",
+          "urn:2e269bf3-ecc6-4bfd-b04c-ddb690e70fdb",
+          "urn:62a6be87-3a93-4a9b-9d61-b7e2d2227a93"
         ]
       },
       {
-        "@id": "urn:b2fe76ce-e994-4c27-95fb-efa9e1b13e2a",
+        "@id": "urn:72a0b816-a755-4ffc-907d-3aa43568e48f",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:403c944c-e137-48ae-a96a-5bee552c4e45"
+          "urn:2e7bdac9-e43c-43cc-86e4-37ee58774229"
         ]
       },
       {
-        "@id": "urn:53c1cf75-c2b5-4387-8517-de84410720a8",
+        "@id": "urn:aa7cc227-1492-4b80-a441-76db5060599b",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:6c0d5299-32be-4a6d-8e1f-465d2b2aa15b",
+        "@id": "urn:1a7bf0ee-20cf-41e0-9479-2831210c5957",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:bbcb84ec-a02f-4564-9cb9-372890d1db97"
+          "urn:6a60a386-74a3-475a-a222-594448a74486"
         ]
       },
       {
-        "@id": "urn:08f0a212-4e7f-4c0f-972e-7e64312cdf16",
+        "@id": "urn:9c9b4cb0-4148-4ac9-abec-285cd3234228",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:fdec7cf7-b051-44d5-a381-e3b0ebab89f3",
-          "urn:35a508ce-4afe-4a32-ae36-7424fc154d95"
+          "urn:3a074d65-3870-4836-8b82-142937eadec0",
+          "urn:cd005f13-432d-442b-97fb-05f487b8d394"
         ]
       },
       {
-        "@id": "urn:0fe8ebe4-db43-4829-83ac-469fc72abfdc",
+        "@id": "urn:757f4edc-d6f0-4c10-b93f-a62dbdff6c54",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:ca9d036e-8e6c-430a-9cdb-c8333b595eeb"
+          "urn:20adc457-4cb5-47e7-b992-ee701f634086"
         ]
       },
       {
-        "@id": "urn:127a38fe-34a4-4248-9396-9b5106b4bca0",
+        "@id": "urn:ea89480e-c072-4df9-a9d5-d7ef51adb5ce",
         "Label": "1dcat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:b361905e-407f-4981-8e58-3208f23a069a"
+          "urn:73216f9b-6c6c-4495-898c-b6e33ab2a9f4"
         ]
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       {
-        "@id": "urn:f466d8dd-a512-444e-87cd-fbea05a30301",
+        "@id": "urn:79cdd853-fa0c-45bb-b58a-4fa937a6c46c",
         "Label": "1dcat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:fdfa03a0-afb7-4faf-ac92-c3820dcd9366"
+          "urn:4eedac58-1578-4f7f-a158-576db499125e"
         ]
       },
       {
-        "@id": "urn:8ddecffb-ef11-4fc1-87c4-ab560a8c9f96",
+        "@id": "urn:b30575e5-b909-41d7-81b2-1c3b1f00624d",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:b396ec48-bd2b-4ab4-9f0b-81683e0d3dbb"
+          "urn:9e5668f5-2b7b-477c-883e-08a7cf7064c7"
         ]
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       {
-        "@id": "urn:ff0e65a4-0e54-4c77-b24e-cf8ce0421e85",
+        "@id": "urn:e6e2b2a3-2877-473a-ac88-37bc4f7b79e6",
         "Label": "1dcat",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:b396ec48-bd2b-4ab4-9f0b-81683e0d3dbb"
+          "urn:9e5668f5-2b7b-477c-883e-08a7cf7064c7"
         ]
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-        "@id": "urn:776184ac-3435-4832-bef8-2c899faf87b9",
+        "@id": "urn:cc3c31ab-c304-46e8-a45d-d21331ec0eba",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
+          "urn:0251ee81-099a-4ebc-98ce-451c65834a94"
         ]
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-        "@id": "urn:3aa37749-2a5c-4b29-9c96-95f12460c619",
+        "@id": "urn:8da457f6-6aae-4cbb-8ed8-dd30f4cf4c30",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
+          "urn:0251ee81-099a-4ebc-98ce-451c65834a94"
         ]
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-        "@id": "urn:02fc8327-ca8d-4b6a-9e0c-339117d4da61",
+        "@id": "urn:de3b0abf-5f0c-4836-84f6-bc9644c12c1f",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:f92855c4-a077-4204-9bfc-18f441b7ad0d"
+          "urn:0251ee81-099a-4ebc-98ce-451c65834a94"
         ]
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-        "@id": "urn:1f3d8475-5233-41cd-acd5-a8123bd9a61c",
+        "@id": "urn:c62ca834-1e3b-484c-a623-8c68dedbd2ee",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:b6460b46-78d0-4ffb-881c-50ab145c4342"
+          "urn:de1871d8-045a-467f-9dc9-e90f0985bb89"
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-        "@id": "urn:b11d414b-9380-422f-bf6e-86d8eabb6e1d",
+        "@id": "urn:03064a8a-0e28-467d-bbe9-8e9cdba8bc5d",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:3ebb9f9c-0f46-4208-9d6b-8e296d89ad87",
+        "AssociatedWith": "urn:203b180e-1762-40ec-80d2-0e9ec0447898",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
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@@ -586,22 +586,22 @@
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     "Entities": [
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-        "@id": "urn:bfcf713f-14cd-4468-8f5c-7cf48df3c5b4",
+        "@id": "urn:8cb47f6b-5181-4500-9572-0906eac7e750",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:768bdff7-fc79-48ed-b4be-76ffa67c22a7",
+        "GeneratedBy": "urn:d458c54d-3dc8-4d05-8d6f-66f9f1a1f8ec",
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+        "@id": "urn:2fd43732-f606-4c9b-a9f0-74885d47be97",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:03dc0426-616f-474d-baa7-d076a27da8f9"
+        "GeneratedBy": "urn:8c858fbe-04ee-48dc-bab5-c1ae2ef9159c"
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+        "@id": "urn:4eec28c2-77b1-4e2a-b5ad-a4bf544143f9",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_voxelwise_p0001/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
         }
       },
       {
-        "@id": "urn:0a6fbff3-07bf-42fa-a99d-6fafd73ac089",
+        "@id": "urn:df27cd3b-d715-4b02-b53b-a3b58ad15509",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_voxelwise_p0001/tone_counting_probe_duration.txt",
         "digest": {
@@ -617,13 +617,13 @@
         }
       },
       {
-        "@id": "urn:5fc905ed-edca-44b6-ae43-65c143fb6ce5",
+        "@id": "urn:1d06d47e-8469-4b81-9404-fbc57017ad23",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:682174ce-71d8-497c-a179-f0b800788bb7"
+        "GeneratedBy": "urn:249dda2c-c59c-44e3-9a54-ec97b2d2c422"
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-        "@id": "urn:ca497e60-981f-473b-acd0-38e3b7c2067a",
+        "@id": "urn:cb1c0160-0e2f-4a93-b70f-8f61530cdb27",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "./afni_voxelwise_p0001/sub-01_T1w.nii.gz",
         "digest": {
@@ -631,13 +631,13 @@
         }
       },
       {
-        "@id": "urn:77da241f-f67f-473f-b2ba-3e092fcb2693",
+        "@id": "urn:906a7e97-4954-4db4-90a8-66b1d76cd022",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:fb106cb1-fa61-4956-bd0a-3929d8b94354"
+        "GeneratedBy": "urn:ef4d92a2-528c-4884-9e55-9b6f0f020e18"
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-        "@id": "urn:b7b049f4-fa84-443d-bd23-cd4cbc67b736",
+        "@id": "urn:03b235ce-bedb-404b-8ea4-83225a07fb37",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "./afni_voxelwise_p0001/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -645,13 +645,13 @@
         }
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-        "@id": "urn:69ff2bf5-eb0b-4ec3-b409-c7915a8763fd",
+        "@id": "urn:f92c7377-ad99-4aab-bed1-84cd8c46c153",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:38ea2ea2-f085-4e72-9a11-8b81a426d4da"
+        "GeneratedBy": "urn:5fee107f-6a26-4850-849e-b57806b77df2"
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-        "@id": "urn:1dbc03de-284a-4cbb-834e-9ec6a25791a0",
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         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -659,16 +659,16 @@
         }
       },
       {
-        "@id": "urn:57727fd5-7503-4003-9938-26f02c545627",
+        "@id": "urn:3fb4cf23-5710-42ec-8e97-28eb4dd28fa3",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:e4fff7da-26ea-4221-bc58-8c8d6b7ca84f",
+        "GeneratedBy": "urn:46e28345-fd6e-4493-8d14-61325dd2787f",
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-        "@id": "urn:835ac5af-9eea-4ef7-9bdc-ea0fa543a819",
+        "@id": "urn:30a127a0-5da6-41e9-b18f-b0d0213d8bad",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -676,25 +676,25 @@
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       },
       {
-        "@id": "urn:ea284690-ee72-45dd-9e8d-4c28ba50d808",
+        "@id": "urn:e73ff039-8349-4916-94b3-209aa86d7a3f",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:88774907-0d85-47ff-a700-e37b59c8ffcb",
+        "GeneratedBy": "urn:9138c461-25d9-4077-b2c2-acf0e0cef1fd",
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-        "@id": "urn:d5916783-9b2c-4299-b00f-0c402f2b5de0",
+        "@id": "urn:54de5eb3-f9ac-4833-886e-bf68285dca2b",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:9c3526b4-b784-4300-968c-fc5b10e380a8",
+        "GeneratedBy": "urn:9f27626b-b95b-4840-a3d2-3c61d7d614f9",
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+        "@id": "urn:af4526e8-a45d-47d0-9556-d2eccbaa0079",
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         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -702,7 +702,7 @@
         }
       },
       {
-        "@id": "urn:9365d298-c58e-4d85-89eb-b035a0a2db37",
+        "@id": "urn:a3f63c7e-f657-4071-82d5-23c6f12857a3",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -710,16 +710,16 @@
         }
       },
       {
-        "@id": "urn:c00db8db-eb32-474f-9295-5d4577ab7c7d",
+        "@id": "urn:5418c0a4-9327-411b-9e4c-8e07ad6b9045",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:3171bb22-275c-48a9-b96d-e7300d4c194a",
+        "GeneratedBy": "urn:8ef8df32-6435-4171-a299-d223d76c6c6e",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
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       },
       {
-        "@id": "urn:b1993396-80d7-421e-9034-9c4e853fc3af",
+        "@id": "urn:5420810d-a31a-49fd-acd7-8b299036cc1f",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -727,7 +727,7 @@
         }
       },
       {
-        "@id": "urn:e3c78c58-4927-4458-b6a5-a0f7b70e3051",
+        "@id": "urn:3a301cd9-25da-471b-8223-bad090c7347d",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -735,7 +735,7 @@
         }
       },
       {
-        "@id": "urn:73c58698-91b1-4c9c-acbe-4e8dfa0baf93",
+        "@id": "urn:701df0dc-45e0-40bd-9782-a2e4d6b55efa",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -743,16 +743,16 @@
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       },
       {
-        "@id": "urn:deaf5c0e-1599-499f-bb03-f61d26803be5",
+        "@id": "urn:b552aaae-f3a6-43f9-a28e-2adaa38edc2c",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:64aaaf3b-4f76-4f27-a079-b66006c759b1",
+        "GeneratedBy": "urn:fa5adf0f-a40a-43dc-b563-398664d6a64e",
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+        "@id": "urn:652558c1-a31d-4c8a-a9c3-822ea694f3d3",
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         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -760,34 +760,34 @@
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       {
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+        "@id": "urn:98af3652-a864-476a-b2d5-059404150cbd",
         "Label": "mat.r$run.vr.aff12.1D",
         "AtLocation": "mat.r$run.vr.aff12.1D",
-        "GeneratedBy": "urn:9c0f6952-8770-4a4e-b180-052debb7b271",
+        "GeneratedBy": "urn:ab91b3fd-d259-4e35-917b-15e7f7eb5390",
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+        "@id": "urn:bdbf17fa-bfef-4bd5-90d8-f02ac4320a78",
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         "AtLocation": "rm.epi.all1",
-        "GeneratedBy": "urn:c3352e3a-ea37-483e-b2b1-280dca36a952",
+        "GeneratedBy": "urn:f4ad58dc-3808-48a2-ab28-b91512eceeb8",
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+        "@id": "urn:99e36abe-ae11-4401-99aa-a5ddc3092b09",
         "Label": "mat.r$run.warp.aff12.1D",
         "AtLocation": "mat.r$run.warp.aff12.1D",
-        "GeneratedBy": "urn:4c2f5457-5e29-4350-a2e1-dac8ecfa35c9",
+        "GeneratedBy": "urn:b1cc91c7-f921-41c1-8be7-392416eeeb13",
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+        "@id": "urn:fa33f60b-37bd-4d5b-b7a2-d803058269e0",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -795,16 +795,16 @@
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       },
       {
-        "@id": "urn:c942e5a2-3cba-4471-9a8d-83cfb7806b93",
+        "@id": "urn:92a9d09b-f1f1-45e6-8d0a-7b0bc87efa44",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run",
-        "GeneratedBy": "urn:01ea16dd-67a3-468a-a252-b8a86d38be4a",
+        "GeneratedBy": "urn:a2736bdd-b58b-4fd5-b985-64805c68ad20",
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+        "@id": "urn:9fb1321c-e5fc-4d51-bbaf-b8c047d3ac80",
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         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -812,16 +812,16 @@
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       {
-        "@id": "urn:fb54cd87-4126-4543-872f-309d9543ac84",
+        "@id": "urn:afd8c04e-b017-4045-92f4-1e118227526f",
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         "AtLocation": "rm.epi.1.r$run",
-        "GeneratedBy": "urn:c1ce2e28-1499-4c87-8b18-6aa1b859c620",
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@@ -829,16 +829,16 @@
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-        "@id": "urn:35a508ce-4afe-4a32-ae36-7424fc154d95",
+        "@id": "urn:cd005f13-432d-442b-97fb-05f487b8d394",
         "Label": "gmean.errts.unit.1D",
         "AtLocation": "gmean.errts.unit.1D",
-        "GeneratedBy": "urn:53c1cf75-c2b5-4387-8517-de84410720a8",
+        "GeneratedBy": "urn:aa7cc227-1492-4b80-a441-76db5060599b",
         "digest": {
           "sha256": "a35a66cce2e2d487762823c197ca1edc450a9887f46f125826b69c5021662f95"
         }
       },
       {
-        "@id": "urn:bbcb84ec-a02f-4564-9cb9-372890d1db97",
+        "@id": "urn:6a60a386-74a3-475a-a222-594448a74486",
         "Label": "out.gcor.1D",
         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
       },
       {
-        "@id": "urn:795e07b1-1d9b-4dab-a710-0d6826630aca",
+        "@id": "urn:a5e9a442-6e07-4e62-aead-07f42bd0f50c",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:6c0d5299-32be-4a6d-8e1f-465d2b2aa15b",
+        "GeneratedBy": "urn:1a7bf0ee-20cf-41e0-9479-2831210c5957",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
         }
       },
       {
-        "@id": "urn:fdec7cf7-b051-44d5-a381-e3b0ebab89f3",
+        "@id": "urn:3a074d65-3870-4836-8b82-142937eadec0",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit+tlrc",
         "digest": {
@@ -1221,16 +1221,16 @@
         }
       },
       {
-        "@id": "urn:83cb5338-7333-4019-a2bf-e413de151931",
+        "@id": "urn:bfce5176-4c49-4689-a492-b874f6fb9187",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:08f0a212-4e7f-4c0f-972e-7e64312cdf16",
+        "GeneratedBy": "urn:9c9b4cb0-4148-4ac9-abec-285cd3234228",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:ca9d036e-8e6c-430a-9cdb-c8333b595eeb",
+        "@id": "urn:20adc457-4cb5-47e7-b992-ee701f634086",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1238,16 +1238,16 @@
         }
       },
       {
-        "@id": "urn:3f4c9f31-a464-4c8c-8391-72d97a89b53c",
+        "@id": "urn:3639999c-eed2-4529-b8da-8e2e9ae92a0b",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:0fe8ebe4-db43-4829-83ac-469fc72abfdc",
+        "GeneratedBy": "urn:757f4edc-d6f0-4c10-b93f-a62dbdff6c54",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:b361905e-407f-4981-8e58-3208f23a069a",
+        "@id": "urn:73216f9b-6c6c-4495-898c-b6e33ab2a9f4",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[3]'",
         "digest": {
@@ -1255,16 +1255,16 @@
         }
       },
       {
-        "@id": "urn:9ae838f4-3473-4c09-af74-fad420e11482",
+        "@id": "urn:ba9ecd0d-21dc-47fa-b7af-24e896b6acbd",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:127a38fe-34a4-4248-9396-9b5106b4bca0",
+        "GeneratedBy": "urn:ea89480e-c072-4df9-a9d5-d7ef51adb5ce",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
         }
       },
       {
-        "@id": "urn:fdfa03a0-afb7-4faf-ac92-c3820dcd9366",
+        "@id": "urn:4eedac58-1578-4f7f-a158-576db499125e",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
         "digest": {
@@ -1272,16 +1272,16 @@
         }
       },
       {
-        "@id": "urn:ba57b40b-bdc1-4b20-baa6-a0a500e6d912",
+        "@id": "urn:3c19bb11-7590-494e-abd7-3bacb3868ae1",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:f466d8dd-a512-444e-87cd-fbea05a30301",
+        "GeneratedBy": "urn:79cdd853-fa0c-45bb-b58a-4fa937a6c46c",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:b396ec48-bd2b-4ab4-9f0b-81683e0d3dbb",
+        "@id": "urn:9e5668f5-2b7b-477c-883e-08a7cf7064c7",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:4495f152-217c-4c22-8568-7fa88bb8598d",
+        "@id": "urn:bd82cd22-8ef8-4d4b-b705-233e1e6f43d3",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:8ddecffb-ef11-4fc1-87c4-ab560a8c9f96",
+        "GeneratedBy": "urn:b30575e5-b909-41d7-81b2-1c3b1f00624d",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:7e3db413-8335-4676-9cf6-1602a3b1f94f",
+        "@id": "urn:d11afa04-c763-4db2-99d2-2deb38f3189d",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:ff0e65a4-0e54-4c77-b24e-cf8ce0421e85",
+        "GeneratedBy": "urn:e6e2b2a3-2877-473a-ac88-37bc4f7b79e6",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:4256ab70-0769-45e6-a40b-c7adda1ca1d2",
+        "@id": "urn:4a128eec-b732-498f-9681-9f876d4f414a",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:776184ac-3435-4832-bef8-2c899faf87b9",
+        "GeneratedBy": "urn:cc3c31ab-c304-46e8-a45d-d21331ec0eba",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:76dcbbc1-5238-4257-916f-2a589f7983e7",
+        "@id": "urn:a39b454f-e907-4aa9-8514-34bce78645df",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:3aa37749-2a5c-4b29-9c96-95f12460c619",
+        "GeneratedBy": "urn:8da457f6-6aae-4cbb-8ed8-dd30f4cf4c30",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:032b261b-42a2-41b6-979f-dbd8a82c6d40",
+        "@id": "urn:4a159e34-28e3-4caf-acb3-9d8efe32ce7b",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:02fc8327-ca8d-4b6a-9e0c-339117d4da61",
+        "GeneratedBy": "urn:de3b0abf-5f0c-4836-84f6-bc9644c12c1f",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:b6460b46-78d0-4ffb-881c-50ab145c4342",
+        "@id": "urn:de1871d8-045a-467f-9dc9-e90f0985bb89",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:1d50dc8c-5f1c-432f-816c-beee79b3a710",
+        "@id": "urn:3bb92e5b-81c0-493e-8fbe-ba84c36c346d",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:b11d414b-9380-422f-bf6e-86d8eabb6e1d",
+        "GeneratedBy": "urn:03064a8a-0e28-467d-bbe9-8e9cdba8bc5d",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_default_proc_bloc.jsonld b/examples/from_parsers/afni/afni_default_proc_bloc.jsonld
index b2048a5cf..71bcac700 100644
--- a/examples/from_parsers/afni/afni_default_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_default_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "@id": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:42974bae-1dd8-4079-a97d-4ba1ccc9632e",
+        "@id": "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_voxelwise_p0001/tone_counting_onset_times.txt ./afni_voxelwise_p0001/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy ./afni_voxelwise_p0001/sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:c495f808-45f9-4230-9aac-403fe68f2a91",
-          "urn:7459b441-2e93-4d1a-a6fe-bf28a3d78593",
-          "urn:b3e881ab-5017-474d-ab20-1ff4734e60f1"
+          "urn:3178b117-e8ae-48cc-9e0e-81471311e1f0",
+          "urn:ecd7913d-2d7a-454b-a4e9-4c3500333405",
+          "urn:c3d9964f-7778-4440-8d1a-08d683e8d4dd"
         ]
       },
       {
-        "@id": "urn:8433fb76-022b-4846-b2d4-fdc2cbeae320",
+        "@id": "urn:b3739448-eeb9-483a-becc-989cce766a2d",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_voxelwise_p0001/sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:e5c4e54e-7449-4454-916d-ac095d2d8c98"
+          "urn:c5f17139-6169-4990-9acd-b6673209beba"
         ]
       },
       {
-        "@id": "urn:7c2dc4f8-24fc-4996-ab18-2e8059b863d6",
+        "@id": "urn:d965b6df-759f-418b-a6e5-0eac46db33da",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:543ec73e-7a7b-4f1c-b0f2-5e4faa4a024a",
-          "urn:3a8fa6eb-a642-4a2b-983c-79bd02ca66f8"
+          "urn:c65c329e-2d4d-43ab-b683-540ff1c9a6c1",
+          "urn:ef69e3aa-d7be-4960-b129-6ad43fc9442c"
         ]
       },
       {
-        "@id": "urn:6ed86163-23f8-47e8-89ec-54d1da8e4826",
+        "@id": "urn:4342af1c-2b81-4c02-b669-ccdebeaafff8",
         "Label": "tshift",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:543ec73e-7a7b-4f1c-b0f2-5e4faa4a024a"
+          "urn:c65c329e-2d4d-43ab-b683-540ff1c9a6c1"
         ]
       },
       {
-        "@id": "urn:84181693-0714-48f4-9e3b-b1b52f2f8877",
+        "@id": "urn:8357220e-6ce0-4b76-a86e-9e52f8105a66",
         "Label": "align",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:bbe97082-e102-4703-8c89-979834092600",
-          "urn:9f71d53e-4e02-4a4c-a895-35ba16cbe373"
+          "urn:74362364-33c0-47db-81df-fe5bc8a25c49",
+          "urn:b60f8029-dace-4def-b134-96c533ed2469"
         ]
       },
       {
-        "@id": "urn:fb0604a6-1759-4f62-97f1-fc18df7e0e79",
+        "@id": "urn:efe55a24-f1b1-4b61-8343-0087b38ed521",
         "Label": "tlrc",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:5335c81d-8e46-452b-9092-fb041b634d5f",
-          "urn:6354be3e-5870-480b-a4e9-c0337b907c91",
-          "urn:699344d3-19f3-46c0-98ae-3a9756df0bd8"
+          "urn:44bb9c88-7873-4710-a2b7-b0fbcee2fd73",
+          "urn:ceafbca0-7a13-4165-b3bb-60120eef23cb",
+          "urn:04d7f3d7-1ab8-40a5-b6ec-16f7bb2570e3"
         ]
       },
       {
-        "@id": "urn:04b2168c-1bb1-445f-b71d-0bc0f29ada87",
+        "@id": "urn:32473147-0c61-422a-b307-54b33fdc4cc7",
         "Label": "volreg",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:68c34e3d-c21c-423c-8152-3fe74f2cf2a2",
-          "urn:68c34e3d-c21c-423c-8152-3fe74f2cf2a2",
-          "urn:699344d3-19f3-46c0-98ae-3a9756df0bd8",
-          "urn:753c1b0c-e222-4f15-8866-5546c1c4ba3d",
-          "urn:68c34e3d-c21c-423c-8152-3fe74f2cf2a2",
-          "urn:753c1b0c-e222-4f15-8866-5546c1c4ba3d",
-          "urn:1f8622e8-1b41-46db-8ea0-c302e1a18b83",
-          "urn:ef9e05cf-67b3-40d2-8746-162f2fea45e7",
-          "urn:b1b48e81-1b17-4657-9d77-27a71bfac7bb",
-          "urn:25bf796d-6fa6-462b-9152-ac64033f2fb9",
-          "urn:130b871a-526a-49f0-aedb-a4fd309f803f",
-          "urn:b1109425-53a2-4d85-9c69-6c3da5a73743",
-          "urn:753c1b0c-e222-4f15-8866-5546c1c4ba3d",
-          "urn:ac0cbc3a-d528-41ac-9614-661e260ac537"
+          "urn:7b84f725-23d1-47b6-bd1a-8a066b03a9c8",
+          "urn:7b84f725-23d1-47b6-bd1a-8a066b03a9c8",
+          "urn:04d7f3d7-1ab8-40a5-b6ec-16f7bb2570e3",
+          "urn:7b84f725-23d1-47b6-bd1a-8a066b03a9c8",
+          "urn:c57f3b03-6b8b-4a49-91ad-10414a5bb1f6",
+          "urn:c57f3b03-6b8b-4a49-91ad-10414a5bb1f6",
+          "urn:fcf71ded-26d2-4518-a3e8-bb58b66bdb22",
+          "urn:5c5397d3-55c6-4311-aa95-59d746473bec",
+          "urn:04bb8948-1c2b-49c6-a426-7fda9ebaf912",
+          "urn:7bd5dc94-90f0-4d26-b304-d5ecea6af65e",
+          "urn:73cd9e98-c666-404b-ae9b-7ac11c80b23f",
+          "urn:a49dacf2-01e0-4a32-aa85-02ab54a8d3b9",
+          "urn:c57f3b03-6b8b-4a49-91ad-10414a5bb1f6",
+          "urn:cb9a8af7-6454-46d3-8072-d4fb735a7949"
         ]
       },
       {
-        "@id": "urn:ac224bd4-b45c-4ad9-a7c7-14bff747481d",
+        "@id": "urn:6e82ab5e-2cae-4566-b691-f4eb52ac5a93",
         "Label": "blur",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:d66a89e0-e899-4368-b615-3138cf30c215",
-          "urn:dbf01613-5698-4ca9-b6c5-e1d7fcbcd75c"
+          "urn:23be68f7-c7f8-4eb2-b641-133be843e323",
+          "urn:e6997f21-9f7f-4f04-8936-c6985a945567"
         ]
       },
       {
-        "@id": "urn:a4725cde-22c1-43e1-bb39-8ca323359467",
+        "@id": "urn:dda849d1-c75a-4abc-88ae-d29ae70310b1",
         "Label": "mask",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:cbaacc0b-fa57-4e78-8f67-1518f03bd398",
-          "urn:753c1b0c-e222-4f15-8866-5546c1c4ba3d",
-          "urn:b6fa3c79-0f4b-43ca-9e68-105676040d46",
-          "urn:fad5fe04-ff55-413d-ac3c-b845eb60abe7",
-          "urn:5c4586db-865a-4612-818d-aedbe8a7214c",
-          "urn:0891ae6e-341e-47ff-be6e-b7be11da7d54",
-          "urn:5c4586db-865a-4612-818d-aedbe8a7214c",
-          "urn:0891ae6e-341e-47ff-be6e-b7be11da7d54",
-          "urn:f3864eb5-3dee-4f42-aebc-78dac92cd7ea",
-          "urn:b6fa3c79-0f4b-43ca-9e68-105676040d46",
-          "urn:496059e9-1914-47b7-998c-2b3ab7cef31e"
+          "urn:d5163407-701a-404f-9edd-ef1427791617",
+          "urn:57001d88-00d9-4253-9041-85ab5a01963a",
+          "urn:c57f3b03-6b8b-4a49-91ad-10414a5bb1f6",
+          "urn:6dd32c60-529c-4e5e-b6d5-67ab04a4796f",
+          "urn:4cb49b45-2fc1-44d0-b942-81ef74816b9e",
+          "urn:c141d9b9-99a2-4453-ac73-a8fd148700f6",
+          "urn:4cb49b45-2fc1-44d0-b942-81ef74816b9e",
+          "urn:c141d9b9-99a2-4453-ac73-a8fd148700f6",
+          "urn:57001d88-00d9-4253-9041-85ab5a01963a",
+          "urn:86b9e119-37bf-49fd-b850-0570cc53c3b8",
+          "urn:32abc1e4-0bbf-4ef4-a8e9-c2f67a5eb11c"
         ]
       },
       {
-        "@id": "urn:6fec5948-e934-4d57-885e-2f9ff5bb37ab",
+        "@id": "urn:32cae31b-c5e5-42d4-a310-416b886eed55",
         "Label": "scale",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:cbaacc0b-fa57-4e78-8f67-1518f03bd398",
-          "urn:cbaacc0b-fa57-4e78-8f67-1518f03bd398",
-          "urn:6f283968-276a-4175-ab1d-ad170199c3f3",
-          "urn:b1109425-53a2-4d85-9c69-6c3da5a73743"
+          "urn:d5163407-701a-404f-9edd-ef1427791617",
+          "urn:73cd9e98-c666-404b-ae9b-7ac11c80b23f",
+          "urn:8cb2cdce-390d-44a3-9b79-61baed152e49",
+          "urn:d5163407-701a-404f-9edd-ef1427791617"
         ]
       },
       {
-        "@id": "urn:7c2e9e77-f441-4a6e-a902-d2101c32b8eb",
+        "@id": "urn:fb0a4cf2-0b8a-445d-b252-7e765e1ba496",
         "Label": "regress",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:bc40716c-b325-40dd-81fe-ffe9e270e07f",
-          "urn:bc40716c-b325-40dd-81fe-ffe9e270e07f",
-          "urn:bc40716c-b325-40dd-81fe-ffe9e270e07f",
-          "urn:2629ff4e-7046-4bbb-9ced-42483142f1ba",
-          "urn:2629ff4e-7046-4bbb-9ced-42483142f1ba",
-          "urn:6fac3dd4-3655-4d3d-a4f5-73b727d0283d",
-          "urn:d1d57963-2edd-4c3a-935e-79e9d3ae925b",
-          "urn:df85adc5-0547-478e-a8d0-34cb2391ce58",
-          "urn:dca2af2a-8bf2-48b5-be14-e6e569647003",
-          "urn:b6fa3c79-0f4b-43ca-9e68-105676040d46",
-          "urn:caf58ed5-15de-4ac6-aa9d-3a9c22c728fc",
-          "urn:1ae03796-c374-4c1d-b521-97bc6aeb3c76",
-          "urn:9403d5c6-51b2-46bd-9794-981da1e12b27",
-          "urn:d59db5b5-4ab3-4475-bb6e-9e3510819631",
-          "urn:636d3259-22bf-4dd3-a14a-b564569cac0d",
-          "urn:132f8ed1-de07-49fe-bbcd-0e7d8bf4dc50",
-          "urn:3ae2add0-3e15-43a4-8ed1-2a271df38148",
-          "urn:3ae2add0-3e15-43a4-8ed1-2a271df38148"
+          "urn:ba63f369-bdcf-4064-8aef-f45a16a720c4",
+          "urn:ba63f369-bdcf-4064-8aef-f45a16a720c4",
+          "urn:ba63f369-bdcf-4064-8aef-f45a16a720c4",
+          "urn:015dc35c-8205-4f8b-8c13-a2f68723ce0e",
+          "urn:015dc35c-8205-4f8b-8c13-a2f68723ce0e",
+          "urn:132f3df2-fdac-4638-b3f8-9cd0419c22c1",
+          "urn:9c045eed-e0d8-4752-9f38-b03c8961ba54",
+          "urn:57001d88-00d9-4253-9041-85ab5a01963a",
+          "urn:8c1d797a-e34c-4dd4-824a-c86c07724873",
+          "urn:b41be70e-3eba-42fd-92e5-4df0444a18d4",
+          "urn:998766df-e6b7-4f78-9b68-f4ee34f913b1",
+          "urn:e2ea16a5-484e-40af-a288-0b67e8bad57d",
+          "urn:7f373576-0167-4294-9e8a-e15cfad9516b",
+          "urn:d4caa5e8-8399-4a90-8650-f7ddb831f026",
+          "urn:9981c55e-0d2a-4cac-8dac-2cbbc84e1fef",
+          "urn:9c9da777-12ff-4a63-9181-3e25fe6bc696",
+          "urn:153521cf-ee7b-4e10-bd52-013f29c11e90",
+          "urn:153521cf-ee7b-4e10-bd52-013f29c11e90"
         ]
       },
       {
-        "@id": "urn:a424e26a-4756-4ebf-aee7-78caa8508f49",
+        "@id": "urn:16dddb2c-906b-4a85-b556-0bb3e7ddaff2",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:b6fa3c79-0f4b-43ca-9e68-105676040d46",
-          "urn:b6fa3c79-0f4b-43ca-9e68-105676040d46",
-          "urn:b6fa3c79-0f4b-43ca-9e68-105676040d46"
+          "urn:57001d88-00d9-4253-9041-85ab5a01963a",
+          "urn:57001d88-00d9-4253-9041-85ab5a01963a",
+          "urn:57001d88-00d9-4253-9041-85ab5a01963a"
         ]
       },
       {
-        "@id": "urn:a9ba8f6c-c396-418e-a76a-08e1034d485c",
+        "@id": "urn:f52d0638-4f8b-46ef-911f-4a11a3bd6392",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:432b8f41-0b8f-4a0f-a96e-ef80c4ddc637",
+        "AssociatedWith": "urn:9852ebd4-54f0-4016-8588-1be4e8b1ff1b",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:e289288b-2ab9-40af-bfb8-5ccf11862589"
+          "urn:d0817bad-4522-48f7-9e50-31e3489d82ae"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:c495f808-45f9-4230-9aac-403fe68f2a91",
+        "@id": "urn:3178b117-e8ae-48cc-9e0e-81471311e1f0",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_voxelwise_p0001/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:7459b441-2e93-4d1a-a6fe-bf28a3d78593",
+        "@id": "urn:ecd7913d-2d7a-454b-a4e9-4c3500333405",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_voxelwise_p0001/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:b3e881ab-5017-474d-ab20-1ff4734e60f1",
+        "@id": "urn:c3d9964f-7778-4440-8d1a-08d683e8d4dd",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "./afni_voxelwise_p0001/sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:7037a182-e09d-4c5f-96d7-6374e329ed9d",
+        "@id": "urn:dac3b6a2-ac99-4ff0-9d34-e10ef4cc8206",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:42974bae-1dd8-4079-a97d-4ba1ccc9632e",
+        "GeneratedBy": "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:14cc38ee-b9f4-4f09-8da4-2ff6893c9da8",
+        "@id": "urn:507feb24-9c1e-404a-8fba-db37ec38dad8",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:42974bae-1dd8-4079-a97d-4ba1ccc9632e"
+        "GeneratedBy": "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8"
       },
       {
-        "@id": "urn:ba83ee9c-2d02-4116-a2ea-e5e4f1c78a9d",
+        "@id": "urn:ccd87bea-cc31-4cc3-9005-34da90ca2810",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:42974bae-1dd8-4079-a97d-4ba1ccc9632e"
+        "GeneratedBy": "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8"
       },
       {
-        "@id": "urn:77123f02-8628-496b-ae8c-94d6cbb0a645",
+        "@id": "urn:ed02a601-2201-43da-b2f7-06ca4ab55d01",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:42974bae-1dd8-4079-a97d-4ba1ccc9632e"
+        "GeneratedBy": "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8"
       },
       {
-        "@id": "urn:e5c4e54e-7449-4454-916d-ac095d2d8c98",
+        "@id": "urn:c5f17139-6169-4990-9acd-b6673209beba",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "./afni_voxelwise_p0001/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:94d83b6c-0071-40c5-b3ad-9687a6570107",
+        "@id": "urn:0a9c58e1-195b-4951-9914-70483b001f50",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:8433fb76-022b-4846-b2d4-fdc2cbeae320"
+        "GeneratedBy": "urn:b3739448-eeb9-483a-becc-989cce766a2d"
       },
       {
-        "@id": "urn:543ec73e-7a7b-4f1c-b0f2-5e4faa4a024a",
+        "@id": "urn:c65c329e-2d4d-43ab-b683-540ff1c9a6c1",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:3a8fa6eb-a642-4a2b-983c-79bd02ca66f8",
+        "@id": "urn:ef69e3aa-d7be-4960-b129-6ad43fc9442c",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:736f8ab3-cae1-4022-9c97-ba8843782a36",
+        "@id": "urn:65fccdc3-0cf4-46b6-b5ae-6472af9204c6",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:7c2dc4f8-24fc-4996-ab18-2e8059b863d6",
+        "GeneratedBy": "urn:d965b6df-759f-418b-a6e5-0eac46db33da",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:458f7948-c301-43af-ae62-817a341f59da",
+        "@id": "urn:abda5291-509b-40dd-b303-74ba3f8fe26f",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:7c2dc4f8-24fc-4996-ab18-2e8059b863d6",
+        "GeneratedBy": "urn:d965b6df-759f-418b-a6e5-0eac46db33da",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:543ec73e-7a7b-4f1c-b0f2-5e4faa4a024a",
+        "@id": "urn:c65c329e-2d4d-43ab-b683-540ff1c9a6c1",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:3ad61e65-704a-4488-8b98-355fd8537175",
+        "@id": "urn:598ab807-45ed-4acf-a417-d0bcb23a4959",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:6ed86163-23f8-47e8-89ec-54d1da8e4826",
+        "GeneratedBy": "urn:4342af1c-2b81-4c02-b669-ccdebeaafff8",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:bbe97082-e102-4703-8c89-979834092600",
+        "@id": "urn:b60f8029-dace-4def-b134-96c533ed2469",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:9f71d53e-4e02-4a4c-a895-35ba16cbe373",
+        "@id": "urn:74362364-33c0-47db-81df-fe5bc8a25c49",
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@@ -316,16 +316,16 @@
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@@ -333,7 +333,7 @@
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@@ -341,7 +341,7 @@
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@@ -349,16 +349,16 @@
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@@ -366,16 +366,16 @@
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@@ -383,7 +383,7 @@
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@@ -391,7 +391,7 @@
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@@ -399,7 +399,7 @@
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@@ -407,7 +407,7 @@
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@@ -415,7 +415,7 @@
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@@ -423,7 +423,7 @@
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@@ -431,7 +431,7 @@
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@@ -439,97 +439,97 @@
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@@ -537,7 +537,7 @@
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@@ -545,7 +545,7 @@
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@@ -553,7 +553,7 @@
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@@ -561,7 +561,7 @@
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@@ -569,7 +569,7 @@
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@@ -577,7 +577,7 @@
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@@ -585,7 +585,7 @@
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@@ -593,7 +593,7 @@
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@@ -601,7 +601,7 @@
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@@ -609,61 +609,61 @@
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@@ -671,7 +671,7 @@
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@@ -679,7 +679,7 @@
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@@ -762,7 +762,7 @@
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@@ -778,7 +778,7 @@
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@@ -786,7 +786,7 @@
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@@ -794,7 +794,7 @@
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@@ -802,7 +802,7 @@
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@@ -810,7 +810,7 @@
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@@ -818,133 +818,133 @@
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@@ -952,34 +952,34 @@
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@@ -987,10 +987,10 @@
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diff --git a/examples/from_parsers/afni/afni_gam_proc.jsonld b/examples/from_parsers/afni/afni_gam_proc.jsonld
index be36a2f9d..6486fa7ad 100644
--- a/examples/from_parsers/afni/afni_gam_proc.jsonld
+++ b/examples/from_parsers/afni/afni_gam_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
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-        "@id": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "@id": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
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@@ -13,558 +13,558 @@
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         "Used": [
-          "urn:4b85fce0-fdf4-41f3-a881-081d26c45076"
+          "urn:6d62c1a8-bb15-4ef4-b4a0-2121a034580e"
         ]
       },
       {
-        "@id": "urn:65b9fc59-6869-430a-999d-e71502d2b124",
+        "@id": "urn:7bc6a471-cae3-4f94-a8f2-6547d30e4279",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcopy ./afni_gam/sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:8c989260-b8e4-4730-84f6-c9f317b5e801"
+          "urn:8cad6b99-d47b-4d64-88d3-d5135024d8d9"
         ]
       },
       {
-        "@id": "urn:054bc6c2-0321-4d84-834c-72b9b82ab40b",
+        "@id": "urn:17a72a6f-17b3-484f-bd82-73ac77bb2582",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_gam/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:877884bd-f37b-49d8-8854-b945da56459c"
+          "urn:83af2c97-1b9c-4d19-8899-bf6d1dbbcbc3"
         ]
       },
       {
-        "@id": "urn:2f3eeebb-8a4d-4310-a504-9a07f32015ac",
+        "@id": "urn:e266a5e3-6b72-4e1b-9f60-d17a1bbc757e",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:d865d324-9d68-4ddc-98a9-d67be7354ec2"
+          "urn:a8ac4ccf-6bef-4542-be2d-22e88af9c591"
         ]
       },
       {
-        "@id": "urn:7e6793d1-0414-4d9b-af8c-a9dd3f28798d",
+        "@id": "urn:e53e3355-9001-471d-a597-e07049ea64f4",
         "Label": "cat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:3b4003ca-4008-441b-a571-22ee1c9d81a5"
+          "urn:5a5791ee-c6d4-4622-aef5-6f0645ea1f06"
         ]
       },
       {
-        "@id": "urn:7cbbbda6-46f6-488b-a056-0d6322750ac8",
+        "@id": "urn:b210f01c-8996-4929-9d35-22bfed279734",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:d865d324-9d68-4ddc-98a9-d67be7354ec2"
+          "urn:a8ac4ccf-6bef-4542-be2d-22e88af9c591"
         ]
       },
       {
-        "@id": "urn:74748c41-4b12-4d11-8e2e-bad321a8500f",
+        "@id": "urn:88a41a1d-66fb-452e-b388-09adadae62aa",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:415d2eff-a2e6-4ce0-b03b-4590dc0b938f",
-          "urn:dbed9a86-280e-4ab0-a362-f8eac8382da6"
+          "urn:0ee5119d-90af-4a7c-8534-b4aa68c43aa4",
+          "urn:599e915d-3120-45bb-8437-acd959e9b2aa"
         ]
       },
       {
-        "@id": "urn:7aad8cde-f615-412f-8471-4c996f88ed9d",
+        "@id": "urn:d0988a04-e775-488c-aeeb-43257f04f61e",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:77e12367-533f-4f74-b209-4e4c7a234c4e",
-          "urn:e4884732-273d-40a3-ba49-baf3b9d8c03f"
+          "urn:4397acb5-156a-4edd-93d3-54f9f0c2470a",
+          "urn:e3b3345e-497f-4aeb-9b94-f2a7ce135c46"
         ]
       },
       {
-        "@id": "urn:71b058b4-2de9-4859-84b4-b860b34fd6ba",
+        "@id": "urn:3d780a29-7deb-4d27-8073-e716addd31b3",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:9e9513d0-a33e-46aa-946c-56d1ed1d2b3c"
+          "urn:84148661-5823-4be4-a8f9-f0182c8a4254"
         ]
       },
       {
-        "@id": "urn:4cf18a5d-9510-4dcf-85c4-97b4ab57855f",
+        "@id": "urn:e8ac1dda-2b57-4867-a4c5-1d7b501e068c",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:0df2b518-c426-40f8-afdf-be5a39b75735"
+          "urn:58e14c3c-a6ae-4ea7-b8e3-405904f13da6"
         ]
       },
       {
-        "@id": "urn:083d8661-48cc-477b-8d5e-fa8106d0bfbc",
+        "@id": "urn:156a55d1-9adf-478c-9a01-9fadc0ca23d3",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:0df2b518-c426-40f8-afdf-be5a39b75735"
+          "urn:58e14c3c-a6ae-4ea7-b8e3-405904f13da6"
         ]
       },
       {
-        "@id": "urn:d8954007-4612-40b0-8ded-1060a7c2d47c",
+        "@id": "urn:0b1cdca2-c124-4120-b5ed-f834e76946a6",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:9e9513d0-a33e-46aa-946c-56d1ed1d2b3c"
+          "urn:84148661-5823-4be4-a8f9-f0182c8a4254"
         ]
       },
       {
-        "@id": "urn:53fa78a6-d8f2-471e-a4fa-aa9fa8f08b36",
+        "@id": "urn:e93e5be0-902b-4553-aba7-c605805d1146",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:36fd6847-5445-4ba8-8af6-2cb7f77cdb72",
-          "urn:0df2b518-c426-40f8-afdf-be5a39b75735",
-          "urn:29836344-750d-4e97-9c75-8d446c088f61"
+          "urn:225eb9ff-dd7e-475a-8f7a-f07148982bb2",
+          "urn:58e14c3c-a6ae-4ea7-b8e3-405904f13da6",
+          "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8"
         ]
       },
       {
-        "@id": "urn:a7caa9f1-d947-4eba-957b-ab55a6acba0c",
+        "@id": "urn:995f49ae-4942-4e6f-83d6-c538a506a7c1",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:36fd6847-5445-4ba8-8af6-2cb7f77cdb72",
-          "urn:9b7f5f79-f24a-4919-9491-b51f9162268c",
-          "urn:29836344-750d-4e97-9c75-8d446c088f61"
+          "urn:225eb9ff-dd7e-475a-8f7a-f07148982bb2",
+          "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+          "urn:b9bff359-7ed3-42e2-b4c9-c0643d112ddb"
         ]
       },
       {
-        "@id": "urn:0e625d98-8e7d-44c5-ab39-67df63fe0f85",
+        "@id": "urn:adc60b45-337e-4906-beba-71d2ddc16d4e",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:f033c345-4c18-4394-8840-c59b67eb5768"
+          "urn:3f3adb46-2c8c-4af3-9b74-3b228f01bc25"
         ]
       },
       {
-        "@id": "urn:f5ec68d7-1e7c-4804-9ace-55bf80bd2e7d",
+        "@id": "urn:0c9384d2-5ea5-411b-9fe3-3d83ebaa506b",
         "Label": "cat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:35be4c50-dd13-43e0-bb75-a6d83941a77b"
+          "urn:be84928c-d8ae-4338-bcf4-1ccc2ac748a9"
         ]
       },
       {
-        "@id": "urn:9a31dc1d-5048-4cfd-a60e-a2818eb4ae3a",
+        "@id": "urn:0a29010b-055a-4c9f-a691-467dd9a6592e",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:e800456c-2420-4827-9eed-950861425106"
+          "urn:86d21eba-6ad9-444c-80da-f578ccd1e710"
         ]
       },
       {
-        "@id": "urn:5df370b6-d4b3-41b6-b460-d0f883c0908f",
+        "@id": "urn:e088b1af-cf4d-46bd-9312-a5ea52069771",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:41baa5bb-621c-41c2-b8f8-a92d97097dce",
-          "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de"
+          "urn:36febdec-c791-4426-8358-dc364642e701",
+          "urn:a01d75ac-c17f-4f91-9f22-81e6b3027a66"
         ]
       },
       {
-        "@id": "urn:0e6510cb-25ea-4024-9d79-6f39922fecd0",
+        "@id": "urn:26b6c813-093d-4fba-acee-cb681fa1af8b",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:36fd6847-5445-4ba8-8af6-2cb7f77cdb72"
+          "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8"
         ]
       },
       {
-        "@id": "urn:a65fd1d4-ef92-4252-b635-1d83cdf8bb6e",
+        "@id": "urn:e461db18-e9c3-4b8d-b479-84c6dada49e4",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:b6d01152-e3cd-4131-83f8-5146de72e061"
+          "urn:6e27b1d2-96b8-42e6-965e-395029626f08"
         ]
       },
       {
-        "@id": "urn:00a6d7f7-81fc-40c9-af9e-6c7ef9808562",
+        "@id": "urn:adaed242-86b4-4f40-b755-3f0868eba72f",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:016458f6-3493-4533-9f1d-52d9e340c93d",
-          "urn:a7caba33-8e03-4df1-99c4-144388c1051a"
+          "urn:595e9e51-3851-44c5-ad4b-dbe50c2cba15",
+          "urn:ee7a4504-7361-41ed-af89-d735a28b1750"
         ]
       },
       {
-        "@id": "urn:cd40f8a3-fc8b-42d4-aba3-def4e087b1d7",
+        "@id": "urn:350b0995-92f9-4e2e-b74d-5a483b619a3d",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:cad34a35-b8a1-4d5a-ab7b-f8e6216ecc7b"
+          "urn:266145c2-6cc9-4d78-89f4-c69b41d1dbbd"
         ]
       },
       {
-        "@id": "urn:5fbd55a9-75ef-4599-aa61-610ef8237e58",
+        "@id": "urn:f6724a6c-34c4-473b-b973-7c2ea7f218cb",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:d2c7cb89-4ee1-4f92-bda2-ed418db17cd5",
+        "@id": "urn:04bfadb6-1719-4808-b871-60398db9c3a6",
         "Label": "3dresample",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:36fd6847-5445-4ba8-8af6-2cb7f77cdb72",
-          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
+          "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+          "urn:b231ed1a-43de-4a7f-b1fc-46d2dc47a058"
         ]
       },
       {
-        "@id": "urn:5f091bcc-1352-4778-b7f0-ecc99585501f",
+        "@id": "urn:7c4915b1-ff35-4a5e-a569-440e5a5fc1dc",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:ca73e1d6-96e6-4773-b55c-2e72281f07cd"
+          "urn:c72bb9e6-337f-46f7-8262-4d92ff254cb6"
         ]
       },
       {
-        "@id": "urn:575e8845-cb64-412b-a3bd-03a8ca28dac8",
+        "@id": "urn:0e62a21a-0210-4e71-97a0-90148b6b759d",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:23118e41-8c41-4e4c-9e3e-3c36de30538d",
-          "urn:69086f35-26e1-4854-a167-a3329fe52c8b"
+          "urn:1a942535-5618-4bdc-ba96-e15cfa8f5cef",
+          "urn:29e4cde7-2a6d-4eea-b111-f5ef59fa37e5"
         ]
       },
       {
-        "@id": "urn:539cc786-d245-4e96-896f-106908ebe083",
+        "@id": "urn:5062e111-a526-4e9d-b848-7c6ebacd404c",
         "Label": "3ddot",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:23118e41-8c41-4e4c-9e3e-3c36de30538d",
-          "urn:69086f35-26e1-4854-a167-a3329fe52c8b"
+          "urn:1a942535-5618-4bdc-ba96-e15cfa8f5cef",
+          "urn:29e4cde7-2a6d-4eea-b111-f5ef59fa37e5"
         ]
       },
       {
-        "@id": "urn:ff77f2b9-2a9c-4ab1-aa4a-2d6dbd63d7ad",
+        "@id": "urn:975122d0-dc5b-4136-9564-a952e4b59436",
         "Label": "3dresample",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:e7293b42-c5a8-4a4c-a0d5-9a29f7f215c2",
-          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
+          "urn:38e524db-cce5-4263-884b-660ca792543f",
+          "urn:b231ed1a-43de-4a7f-b1fc-46d2dc47a058"
         ]
       },
       {
-        "@id": "urn:a48732b4-acbc-4106-a1f7-459dcca22dd6",
+        "@id": "urn:eaf3b170-c710-4fec-b825-95943f0d52c5",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:b92c80cd-35e5-4ed5-936a-1ec1f0154003"
+          "urn:f6e8f45d-f00b-4355-940f-4fffe2ce660a"
         ]
       },
       {
-        "@id": "urn:05a732ed-44d0-4002-98ac-cec09f8f0b8d",
+        "@id": "urn:a2b8e2be-47b0-445d-be09-276a9f3c96c1",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:cad34a35-b8a1-4d5a-ab7b-f8e6216ecc7b"
+          "urn:266145c2-6cc9-4d78-89f4-c69b41d1dbbd"
         ]
       },
       {
-        "@id": "urn:f0f6e742-8baf-4107-a547-640947bbf8a0",
+        "@id": "urn:f6cfe28a-e166-4752-92f0-f7162e671ba1",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:cad34a35-b8a1-4d5a-ab7b-f8e6216ecc7b",
-          "urn:560bd7e9-df84-4134-a5a2-ffec5be80914",
-          "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de"
+          "urn:266145c2-6cc9-4d78-89f4-c69b41d1dbbd",
+          "urn:52abab30-8200-46c1-a7d5-5cd13fa04669",
+          "urn:a01d75ac-c17f-4f91-9f22-81e6b3027a66"
         ]
       },
       {
-        "@id": "urn:0288624e-3fe7-438c-a66e-8b0cd95f65c1",
+        "@id": "urn:482e756c-1735-4552-aa69-a61ebd059d85",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:ea85f7a1-dba5-4224-9740-edd22cc70ed2"
+          "urn:80ead96e-5334-44ca-a43c-763052f7e42d"
         ]
       },
       {
-        "@id": "urn:da717efa-327f-4ffa-89d2-92f59a19a50e",
+        "@id": "urn:a9f3eaa0-878b-4b96-9cae-1f2f9bb7d00f",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:ea85f7a1-dba5-4224-9740-edd22cc70ed2"
+          "urn:80ead96e-5334-44ca-a43c-763052f7e42d"
         ]
       },
       {
-        "@id": "urn:9ceeaf33-f1bf-42ea-953f-d6b7d6ae4452",
+        "@id": "urn:7bfd59ea-0347-411d-bf0e-18104d70adef",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:ea85f7a1-dba5-4224-9740-edd22cc70ed2"
+          "urn:80ead96e-5334-44ca-a43c-763052f7e42d"
         ]
       },
       {
-        "@id": "urn:b75866fd-6330-46da-ace3-0f92ce0575fe",
+        "@id": "urn:3c1c1553-6286-4be5-810b-d7bb1aad3ec1",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 7 -stim_times 1 stimuli/tone_counting_onset_times.txt 'GAM' -stim_label 1 tone_counting_onset_times.txt -stim_file 2 motion_demean.1D'[0]' -stim_base 2 -stim_label 2 roll -stim_file 3 motion_demean.1D'[1]' -stim_base 3 -stim_label 3 pitch -stim_file 4 motion_demean.1D'[2]' -stim_base 4 -stim_label 4 yaw -stim_file 5 motion_demean.1D'[3]' -stim_base 5 -stim_label 5 dS -stim_file 6 motion_demean.1D'[4]' -stim_base 6 -stim_label 6 dL -stim_file 7 motion_demean.1D'[5]' -stim_base 7 -stim_label 7 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:0de59090-a792-4965-b076-2ca69af34713"
+          "urn:11f44ec4-ef4a-4148-851c-9470e7743b03"
         ]
       },
       {
-        "@id": "urn:cbfe29b0-9234-4b87-82c4-28b72f0df81c",
+        "@id": "urn:8c0997e2-70f3-4866-a94d-51aa75171c3d",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:dc5ca47a-9548-4022-a31b-d6efb95b8ad9"
+          "urn:3562deaa-5b0a-48b1-8eaa-afe1d78e7fc4"
         ]
       },
       {
-        "@id": "urn:f6b805b2-5c95-418c-9a87-0998cbca636e",
+        "@id": "urn:08fd597b-f4a7-45bd-979f-e58fef88f940",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:0de59090-a792-4965-b076-2ca69af34713"
+          "urn:11f44ec4-ef4a-4148-851c-9470e7743b03"
         ]
       },
       {
-        "@id": "urn:616b3978-03f4-4a66-976d-8d3f371faaff",
+        "@id": "urn:7038bb21-462d-49e4-8648-b1f551beb4f9",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:8f06309e-a4e5-43e9-8254-ec43f9546520"
+          "urn:5121e8ee-779f-4958-a088-9628349736cf"
         ]
       },
       {
-        "@id": "urn:7f04c2a9-c969-462a-bdb3-6c6fce9f667f",
+        "@id": "urn:2249bbef-f91d-41b1-ae95-d63b67759bbc",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:de89a8da-ba9f-4738-92cf-632ab726d7cf"
+          "urn:a4d31d13-6da8-4850-9575-5de3a1280498"
         ]
       },
       {
-        "@id": "urn:ef0524f4-7b3a-4ea9-92dd-fb8c21054636",
+        "@id": "urn:9a4a7929-932f-46fe-a3fe-77c45a06d74b",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:25151d2d-9541-4702-910b-34e9337d6dc4",
-          "urn:cc487d82-3708-49ac-acd2-0bdbc3427711",
-          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
+          "urn:0041442d-735f-4ffe-8ae4-29004a1b4dfb",
+          "urn:10aafe1c-8130-438e-a532-2e58da437e99",
+          "urn:b231ed1a-43de-4a7f-b1fc-46d2dc47a058"
         ]
       },
       {
-        "@id": "urn:11c26016-0bdd-4fd4-a856-57ebc6e26ee7",
+        "@id": "urn:7935d373-23a0-4ddf-9106-346d23889ad4",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:81d22aea-101a-4705-a80b-51377716f6ee"
+          "urn:62f97f3b-0511-4475-ac31-0099f01800fa"
         ]
       },
       {
-        "@id": "urn:b0604212-08c4-4ed2-a594-6f1375164ef7",
+        "@id": "urn:cd1e1f54-9b8d-481a-ab46-dba06afac2a6",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:32553c0c-47d4-4e17-b213-aeb143c39f70",
+        "@id": "urn:6bca44aa-e57a-4b10-bc56-9a2b0922c588",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:c05d71d0-695d-4142-bbdb-88f57fb53219"
+          "urn:273e3231-0307-4f6b-ad9f-71c617e36b55"
         ]
       },
       {
-        "@id": "urn:030ac5c4-f590-4652-abfb-c2415e30f6d0",
+        "@id": "urn:5bdc542e-3b26-4f1c-8d64-4b0b147b00a1",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:538a39c8-734b-4575-9dd3-02305261fdd6",
-          "urn:28923e81-c671-4c5b-aee9-5ef197eb5113"
+          "urn:704c3a83-6508-4dcc-a911-ca32105c0e68",
+          "urn:b9a3f24e-6935-416e-a55d-0902e4eb5784"
         ]
       },
       {
-        "@id": "urn:d446fbfc-2ff1-4066-8050-bcc12f44e46e",
+        "@id": "urn:eb18da33-1c19-4e8e-a0e5-78055b53b9e5",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:00e10563-13fe-4043-bb63-2475389e3ca9"
+          "urn:cc327189-2989-42fc-94e7-b5d178a5013c"
         ]
       },
       {
-        "@id": "urn:5150ea63-253e-4632-8e1c-e6d6f66d3f9b",
+        "@id": "urn:a36ed554-5488-48fc-be06-70df64cc8ec0",
         "Label": "1dcat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting_onset_times.txt.1D",
         "Parameters": {},
         "Used": [
-          "urn:e2af0880-2a04-4a00-96a3-c41d53591247"
+          "urn:55d1580e-1e33-4f71-889f-ca3253de9185"
         ]
       },
       {
-        "@id": "urn:c12def47-7729-4f52-94a9-db975e35d749",
+        "@id": "urn:cd9dbba9-5de0-48e7-9f12-fa304ba16d44",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:38704d9b-61c8-49cc-9b71-84de095523bf"
+          "urn:18751749-1537-427c-9605-143c97185e93"
         ]
       },
       {
-        "@id": "urn:853061ad-42a3-405c-8ea4-4cdf534495d6",
+        "@id": "urn:1fa44076-4389-4924-ab08-7cddf5656426",
         "Label": "1dcat",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:38704d9b-61c8-49cc-9b71-84de095523bf"
+          "urn:18751749-1537-427c-9605-143c97185e93"
         ]
       },
       {
-        "@id": "urn:3e06e6a4-7e79-4404-a663-29c90662e70d",
+        "@id": "urn:99c997b4-e99a-468e-9bb5-e3157f75c708",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
+          "urn:b231ed1a-43de-4a7f-b1fc-46d2dc47a058"
         ]
       },
       {
-        "@id": "urn:b0246264-c0ee-4a84-afb9-bff6a8ca208c",
+        "@id": "urn:21785f36-0629-4cc3-a83b-2de18aac9d52",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
+          "urn:b231ed1a-43de-4a7f-b1fc-46d2dc47a058"
         ]
       },
       {
-        "@id": "urn:2b88e9cd-f0ae-44d5-b8f5-aac0f7d43b5b",
+        "@id": "urn:68db26d2-85c8-4e1c-82ef-57b20a491822",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+        "AssociatedWith": "urn:e02c5bed-a199-4b23-99cd-c75d11d5f857",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
+          "urn:b231ed1a-43de-4a7f-b1fc-46d2dc47a058"
         ]
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@@ -776,16 +776,16 @@
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@@ -827,16 +827,16 @@
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-        "@id": "urn:5cc39977-3988-4a79-94ae-15acef78badd",
+        "@id": "urn:f19716f5-039f-45fe-a46d-a39bde4da5fe",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:853061ad-42a3-405c-8ea4-4cdf534495d6",
+        "GeneratedBy": "urn:1fa44076-4389-4924-ab08-7cddf5656426",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:4110db24-024a-4682-b347-ed6128ea0917",
+        "@id": "urn:0a4ff98b-cab9-4436-8cca-245bbc203236",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:3e06e6a4-7e79-4404-a663-29c90662e70d",
+        "GeneratedBy": "urn:99c997b4-e99a-468e-9bb5-e3157f75c708",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:f4a25276-5185-4794-a1d8-5096e20c0aa4",
+        "@id": "urn:e6f949ee-3bc5-4f71-bbe5-d8a73afff672",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:b0246264-c0ee-4a84-afb9-bff6a8ca208c",
+        "GeneratedBy": "urn:21785f36-0629-4cc3-a83b-2de18aac9d52",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:47beff27-61b1-4e9a-ac71-168810c57a26",
+        "@id": "urn:dc7e9182-537e-4e7e-8b63-8ce1b3041ae9",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:2b88e9cd-f0ae-44d5-b8f5-aac0f7d43b5b",
+        "GeneratedBy": "urn:68db26d2-85c8-4e1c-82ef-57b20a491822",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:6a10282f-6a38-4a4e-b8d8-91e7875c4262",
+        "@id": "urn:0ac3c052-6f41-4547-870f-93b91ef0a84c",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1306,10 +1306,10 @@
         }
       },
       {
-        "@id": "urn:c48eb7b9-b8c4-4983-b55e-e69acedcf06c",
+        "@id": "urn:b12172b5-b120-4960-9e98-588064fe5d3d",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:32aae5a8-0964-451f-bcb0-8d617608c133",
+        "GeneratedBy": "urn:eb92f9df-ef75-491e-928e-c8328bd4532d",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_gam_proc_bloc.jsonld b/examples/from_parsers/afni/afni_gam_proc_bloc.jsonld
index 59fd1b478..340d6538d 100644
--- a/examples/from_parsers/afni/afni_gam_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_gam_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "@id": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,176 +13,176 @@
     ],
     "Activities": [
       {
-        "@id": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f",
+        "@id": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_gam/tone_counting_onset_times.txt $output_dir/stimuli; 3dcopy ./afni_gam/sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:da251042-e0c9-4a5d-aa0f-65586a9afef2",
-          "urn:2f72377d-7460-4e27-902b-a8fd279f404c"
+          "urn:78c5f0b6-e85c-4a57-8482-2c7215257822",
+          "urn:9c77fa9f-9cdc-4543-8a8d-38275793aeb0"
         ]
       },
       {
-        "@id": "urn:21a3f1b0-7d5f-472c-986d-e69d54815075",
+        "@id": "urn:63d224d0-eb64-4a30-a939-811117bae908",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_gam/sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:fa49893e-f5f8-4125-a711-ab61e8b086ad"
+          "urn:339f5128-3ff0-4e59-a183-937ead1f4756"
         ]
       },
       {
-        "@id": "urn:3f6420f5-5f28-44a5-a547-f4a55c2d74a1",
+        "@id": "urn:0f7bef4b-4af1-49fc-b13d-3a8b6a9f8dc7",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:f7303d63-e26e-448b-999e-2f5151bceeb2",
-          "urn:7923f169-1149-48d3-ab90-aa7b13f7438f"
+          "urn:0d46e72a-feab-4f6a-ba4f-10c89aa837dd",
+          "urn:6687424b-809a-4438-be40-6a6c62056b73"
         ]
       },
       {
-        "@id": "urn:bf16fd27-cf3d-4155-9416-ad1c8cbe4fe2",
+        "@id": "urn:1940a888-fea7-4526-b90b-8eff68400ec1",
         "Label": "tshift",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:f7303d63-e26e-448b-999e-2f5151bceeb2"
+          "urn:0d46e72a-feab-4f6a-ba4f-10c89aa837dd"
         ]
       },
       {
-        "@id": "urn:a899046d-1abd-4476-b24f-bb78675772cd",
+        "@id": "urn:50e20ccc-b165-4f42-9835-b7ed07183397",
         "Label": "align",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:20bde1e7-dd88-4056-81dd-b02a9243bc96",
-          "urn:39568419-2c2e-4da0-8197-ccd1295f5f91"
+          "urn:4e6ee55a-2606-43d5-8318-fe5853c29fc2",
+          "urn:8c983441-d454-42c9-a6c2-0ac8fd4e7844"
         ]
       },
       {
-        "@id": "urn:49752f72-6a50-440e-abdf-bae073c6dd40",
+        "@id": "urn:80fe1888-cba7-45c4-b609-c42f8b9ed545",
         "Label": "tlrc",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:fb111b45-6a50-416e-9ebc-47853b4ae1e8",
-          "urn:a1248b06-2827-402c-a459-bf581539c214",
-          "urn:4b53fd78-baf2-4ad9-b03b-f6950080ffc8"
+          "urn:025f40a3-cd87-42e1-8012-f0f99da7b63f",
+          "urn:8f9d2d72-9169-489e-a681-528405d545fb",
+          "urn:5942de21-999c-4019-8e04-6978dbabc03c"
         ]
       },
       {
-        "@id": "urn:1a0347c5-1103-4187-9fe3-2e53100f089c",
+        "@id": "urn:898da8f5-a63a-4248-84b6-c59a933aec05",
         "Label": "volreg",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:1d532a3f-d2f2-4331-8a39-1f17fa9cb5c0",
-          "urn:1d532a3f-d2f2-4331-8a39-1f17fa9cb5c0",
-          "urn:4b53fd78-baf2-4ad9-b03b-f6950080ffc8",
-          "urn:5d1480fb-2652-4b92-8dff-7ad31fd4f73a",
-          "urn:1d532a3f-d2f2-4331-8a39-1f17fa9cb5c0",
-          "urn:5d1480fb-2652-4b92-8dff-7ad31fd4f73a",
-          "urn:a32dfe88-22f5-4e9b-b025-9892df2eb81a",
-          "urn:3daddd79-e238-4f90-a46e-a7ee2638e983",
-          "urn:ae14ed40-d28f-491f-ad7f-f9364a2daeca",
-          "urn:c5da5c16-852c-4a75-a6e6-f70fcc9bc766",
-          "urn:f63bd3cb-5e25-43e7-9b62-0a6b714b9fd0",
-          "urn:cb038b70-f5e5-4619-a661-3b6f816e4043",
-          "urn:5d1480fb-2652-4b92-8dff-7ad31fd4f73a",
-          "urn:e9d84da7-d15b-4a7a-8c90-240b2a88a4fb"
+          "urn:7e9b4723-0041-48af-a1c6-2f7853be68af",
+          "urn:7e9b4723-0041-48af-a1c6-2f7853be68af",
+          "urn:5942de21-999c-4019-8e04-6978dbabc03c",
+          "urn:7e9b4723-0041-48af-a1c6-2f7853be68af",
+          "urn:e7b3d762-06a3-4ab8-b5a0-36d56b8ca686",
+          "urn:c2e3c6f9-ef9b-4224-81c0-d12f2387a4ab",
+          "urn:e7b3d762-06a3-4ab8-b5a0-36d56b8ca686",
+          "urn:b8510365-9a63-4fce-a710-1fac7f827369",
+          "urn:c5509615-585c-4c3e-89d6-842233802aa1",
+          "urn:01c14a4b-ed94-4cd7-aecf-b1cf5dbd0636",
+          "urn:1e4f098b-80d9-4ada-b2b4-b771609d447f",
+          "urn:5ede64d7-ed6a-43e8-9d84-48c85ba3337d",
+          "urn:e7b3d762-06a3-4ab8-b5a0-36d56b8ca686",
+          "urn:83061624-d009-4f4b-8ae0-b5a6a300ae13"
         ]
       },
       {
-        "@id": "urn:11ebe6d2-2926-485f-90ea-56154c85bab1",
+        "@id": "urn:5a12057b-7894-4658-8885-bf8772cdd0cf",
         "Label": "blur",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:32e9944d-72b1-4e01-8c59-14a8ffb09a0f",
-          "urn:fd74433b-972f-43cf-a1b4-dfc0eda30f74"
+          "urn:7be37559-6bf1-48c8-a499-879e7c0a4005",
+          "urn:e131bee9-ce48-4f8f-b464-6b794de8d1bb"
         ]
       },
       {
-        "@id": "urn:0930ef3d-25ea-478e-a1e5-c90f4ce8d278",
+        "@id": "urn:f58acb68-39c7-4175-81a0-f7b8353c7746",
         "Label": "mask",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:3c3330f9-e4c8-4073-b802-98d8d99c58e4",
-          "urn:5d1480fb-2652-4b92-8dff-7ad31fd4f73a",
-          "urn:f599026a-b8c6-4a3a-84ec-c35bfb1b8d22",
-          "urn:d3dcadd3-c0fd-43b7-bcc1-dd468be525fd",
-          "urn:0ba6cdcc-8a3d-4d06-b346-1e6354434c52",
-          "urn:53901983-6ef5-4277-8aab-db76acd0368b",
-          "urn:0ba6cdcc-8a3d-4d06-b346-1e6354434c52",
-          "urn:53901983-6ef5-4277-8aab-db76acd0368b",
-          "urn:1eeee773-a0f8-46a9-a05c-64cd0ada78df",
-          "urn:f599026a-b8c6-4a3a-84ec-c35bfb1b8d22",
-          "urn:f6592657-36ed-4171-a796-572995e39ac0"
+          "urn:8d2f96db-47a1-47c6-b087-1619a32013c5",
+          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f",
+          "urn:e7b3d762-06a3-4ab8-b5a0-36d56b8ca686",
+          "urn:a909d3a6-899d-4094-8057-76e748420573",
+          "urn:04ac1ef8-d5a2-4352-ab0a-d06ffa23be2b",
+          "urn:a3751fc7-b292-48b3-9527-c6973b0e1b55",
+          "urn:04ac1ef8-d5a2-4352-ab0a-d06ffa23be2b",
+          "urn:a3751fc7-b292-48b3-9527-c6973b0e1b55",
+          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f",
+          "urn:5d7ec244-9551-4cb8-99be-7c1dad861e6c",
+          "urn:2337b5ba-1b0e-478b-922a-f3823ffa09f3"
         ]
       },
       {
-        "@id": "urn:b76ddcb4-bac5-49f8-bccb-e7c55c21b716",
+        "@id": "urn:4f056dd0-3f08-4407-befe-2e698cb60933",
         "Label": "scale",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:3c3330f9-e4c8-4073-b802-98d8d99c58e4",
-          "urn:3c3330f9-e4c8-4073-b802-98d8d99c58e4",
-          "urn:44ef785d-33ad-462c-8cbf-cde5037a61e5",
-          "urn:cb038b70-f5e5-4619-a661-3b6f816e4043"
+          "urn:8d2f96db-47a1-47c6-b087-1619a32013c5",
+          "urn:1e4f098b-80d9-4ada-b2b4-b771609d447f",
+          "urn:4ecbb73d-2077-4d41-85ef-8d76176486f4",
+          "urn:8d2f96db-47a1-47c6-b087-1619a32013c5"
         ]
       },
       {
-        "@id": "urn:1e4a1da0-955c-4597-81e4-87a8bf71b55f",
+        "@id": "urn:660fe90e-75ea-435d-8db6-d226d404baef",
         "Label": "regress",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 7 -stim_times 1 stimuli/tone_counting_onset_times.txt 'GAM' -stim_label 1 tone_counting_onset_times.txt -stim_file 2 motion_demean.1D'[0]' -stim_base 2 -stim_label 2 roll -stim_file 3 motion_demean.1D'[1]' -stim_base 3 -stim_label 3 pitch -stim_file 4 motion_demean.1D'[2]' -stim_base 4 -stim_label 4 yaw -stim_file 5 motion_demean.1D'[3]' -stim_base 5 -stim_label 5 dS -stim_file 6 motion_demean.1D'[4]' -stim_base 6 -stim_label 6 dL -stim_file 7 motion_demean.1D'[5]' -stim_base 7 -stim_label 7 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting_onset_times.txt.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:dad480ac-f312-4758-89c9-2c6765d6393a",
-          "urn:dad480ac-f312-4758-89c9-2c6765d6393a",
-          "urn:dad480ac-f312-4758-89c9-2c6765d6393a",
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-          "urn:0994bdfc-8c4f-4872-89f1-8af5a3f902b6",
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-          "urn:8ad65810-e0b3-4254-8473-17ac44058252",
-          "urn:e4db3a91-23a1-4bfc-8d9f-e44c398c6a2c",
-          "urn:116e0cb2-5547-433d-9b0a-cd59c277c6b8",
-          "urn:116e0cb2-5547-433d-9b0a-cd59c277c6b8"
+          "urn:e6fbf256-8d35-47ec-876b-0357ad3e8ea9",
+          "urn:e6fbf256-8d35-47ec-876b-0357ad3e8ea9",
+          "urn:e6fbf256-8d35-47ec-876b-0357ad3e8ea9",
+          "urn:09be8e24-44e4-445c-a6a3-1fcee09bc3c6",
+          "urn:09be8e24-44e4-445c-a6a3-1fcee09bc3c6",
+          "urn:e36061c5-57b1-4a49-ae7e-0484d46f0d41",
+          "urn:437b4733-b718-48db-b954-260a3f94bd67",
+          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f",
+          "urn:283dfd64-9894-47e8-b68c-de1c4ff418b7",
+          "urn:bf65fe1e-ad76-47f9-a992-39f329cd3457",
+          "urn:5a7d3988-7a4e-412a-a2a9-f6f681725a3b",
+          "urn:ee2da733-8901-4641-8d57-d3db216ea5ba",
+          "urn:a6cf3443-a7a0-40c4-9036-dfeb288a68a3",
+          "urn:934646fa-7bbc-4805-a09f-9f5610ab15fc",
+          "urn:4d84c4a2-4d4a-4c24-bebe-a6c923523ebd",
+          "urn:ce34796c-ecbb-473e-aabd-9aaac62ef33c",
+          "urn:ce34796c-ecbb-473e-aabd-9aaac62ef33c"
         ]
       },
       {
-        "@id": "urn:da7d2044-3bd8-4f27-88cd-f87a8407fdb0",
+        "@id": "urn:9d077082-757f-4630-99ce-4cea132a877d",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:f599026a-b8c6-4a3a-84ec-c35bfb1b8d22",
-          "urn:f599026a-b8c6-4a3a-84ec-c35bfb1b8d22",
-          "urn:f599026a-b8c6-4a3a-84ec-c35bfb1b8d22"
+          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f",
+          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f",
+          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f"
         ]
       },
       {
-        "@id": "urn:fcd0434b-5af5-4ca3-a091-42d2f7a8f886",
+        "@id": "urn:18a22981-1713-456d-b688-a8619a182a84",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:22db26bd-486f-4dc5-980d-f943143a3734",
+        "AssociatedWith": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:ebb97d70-b892-4949-9449-97c5864b16ae"
+          "urn:21e521a1-5a90-48de-bc39-16737d89f891"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:da251042-e0c9-4a5d-aa0f-65586a9afef2",
+        "@id": "urn:78c5f0b6-e85c-4a57-8482-2c7215257822",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_gam/tone_counting_onset_times.txt",
         "digest": {
@@ -190,7 +190,7 @@
         }
       },
       {
-        "@id": "urn:2f72377d-7460-4e27-902b-a8fd279f404c",
+        "@id": "urn:9c77fa9f-9cdc-4543-8a8d-38275793aeb0",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "./afni_gam/sub-01_T1w.nii.gz",
         "digest": {
@@ -198,34 +198,34 @@
         }
       },
       {
-        "@id": "urn:9ad2b4b3-af7c-4e12-aaff-39f1e5dd7553",
+        "@id": "urn:6bfc4ae6-5c3a-4973-a4f8-1a23e1780ca3",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f",
+        "GeneratedBy": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:4324d607-6f82-4b26-9b3f-be7b6646d02c",
+        "@id": "urn:e910de43-3fa5-4f82-bf5d-87a1382af00d",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f"
+        "GeneratedBy": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef"
       },
       {
-        "@id": "urn:7e86c053-51ee-4584-8815-4172d57aba3b",
+        "@id": "urn:6994398e-bc35-4415-9880-afd5e50c2276",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f"
+        "GeneratedBy": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef"
       },
       {
-        "@id": "urn:7b48b2ff-cf50-4ebc-bf3e-89864d8e6665",
+        "@id": "urn:7b6463a1-1b0a-4579-a0de-a1f87a041b61",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:3f94e5a2-855a-48ed-bcc8-11f9506e1f6f"
+        "GeneratedBy": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef"
       },
       {
-        "@id": "urn:fa49893e-f5f8-4125-a711-ab61e8b086ad",
+        "@id": "urn:339f5128-3ff0-4e59-a183-937ead1f4756",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "./afni_gam/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -233,13 +233,13 @@
         }
       },
       {
-        "@id": "urn:7ef93785-2d16-4eb2-9651-a05fd8350c3a",
+        "@id": "urn:c42f852d-bf29-448c-98ce-f10ad715e43d",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:21a3f1b0-7d5f-472c-986d-e69d54815075"
+        "GeneratedBy": "urn:63d224d0-eb64-4a30-a939-811117bae908"
       },
       {
-        "@id": "urn:f7303d63-e26e-448b-999e-2f5151bceeb2",
+        "@id": "urn:0d46e72a-feab-4f6a-ba4f-10c89aa837dd",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -247,7 +247,7 @@
         }
       },
       {
-        "@id": "urn:7923f169-1149-48d3-ab90-aa7b13f7438f",
+        "@id": "urn:6687424b-809a-4438-be40-6a6c62056b73",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -255,25 +255,25 @@
         }
       },
       {
-        "@id": "urn:6971be6a-53d5-42ae-9a7d-62bfc15d7199",
+        "@id": "urn:c6a9dd36-7589-4de6-8fa2-2fdcd43dfe88",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:3f6420f5-5f28-44a5-a547-f4a55c2d74a1",
+        "GeneratedBy": "urn:0f7bef4b-4af1-49fc-b13d-3a8b6a9f8dc7",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:5ec01159-c502-4272-a8e7-af88f3165ef8",
+        "@id": "urn:130f1168-701b-4ae0-a70d-f5fd03e3e729",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:3f6420f5-5f28-44a5-a547-f4a55c2d74a1",
+        "GeneratedBy": "urn:0f7bef4b-4af1-49fc-b13d-3a8b6a9f8dc7",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:f7303d63-e26e-448b-999e-2f5151bceeb2",
+        "@id": "urn:0d46e72a-feab-4f6a-ba4f-10c89aa837dd",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -281,16 +281,16 @@
         }
       },
       {
-        "@id": "urn:84f2ef39-b49d-4c49-8264-81af872b2cbc",
+        "@id": "urn:5c99fbfa-175c-45d4-81cc-ba9545d0077a",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:bf16fd27-cf3d-4155-9416-ad1c8cbe4fe2",
+        "GeneratedBy": "urn:1940a888-fea7-4526-b90b-8eff68400ec1",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:20bde1e7-dd88-4056-81dd-b02a9243bc96",
+        "@id": "urn:4e6ee55a-2606-43d5-8318-fe5853c29fc2",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -298,7 +298,7 @@
         }
       },
       {
-        "@id": "urn:39568419-2c2e-4da0-8197-ccd1295f5f91",
+        "@id": "urn:8c983441-d454-42c9-a6c2-0ac8fd4e7844",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -306,16 +306,16 @@
         }
       },
       {
-        "@id": "urn:e571d0ba-5590-4c78-8061-3aaebe4095b6",
+        "@id": "urn:ddace0ae-fa26-408a-a611-f76c0d6494a6",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:a899046d-1abd-4476-b24f-bb78675772cd",
+        "GeneratedBy": "urn:50e20ccc-b165-4f42-9835-b7ed07183397",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
       },
       {
-        "@id": "urn:fb111b45-6a50-416e-9ebc-47853b4ae1e8",
+        "@id": "urn:025f40a3-cd87-42e1-8012-f0f99da7b63f",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -323,7 +323,7 @@
         }
       },
       {
-        "@id": "urn:a1248b06-2827-402c-a459-bf581539c214",
+        "@id": "urn:8f9d2d72-9169-489e-a681-528405d545fb",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -331,7 +331,7 @@
         }
       },
       {
-        "@id": "urn:4b53fd78-baf2-4ad9-b03b-f6950080ffc8",
+        "@id": "urn:5942de21-999c-4019-8e04-6978dbabc03c",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -339,16 +339,16 @@
         }
       },
       {
-        "@id": "urn:e9d84da7-d15b-4a7a-8c90-240b2a88a4fb",
+        "@id": "urn:83061624-d009-4f4b-8ae0-b5a6a300ae13",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:49752f72-6a50-440e-abdf-bae073c6dd40",
+        "GeneratedBy": "urn:80fe1888-cba7-45c4-b609-c42f8b9ed545",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:4b53fd78-baf2-4ad9-b03b-f6950080ffc8",
+        "@id": "urn:5942de21-999c-4019-8e04-6978dbabc03c",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -356,16 +356,16 @@
         }
       },
       {
-        "@id": "urn:e9d84da7-d15b-4a7a-8c90-240b2a88a4fb",
+        "@id": "urn:83061624-d009-4f4b-8ae0-b5a6a300ae13",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:49752f72-6a50-440e-abdf-bae073c6dd40",
+        "GeneratedBy": "urn:80fe1888-cba7-45c4-b609-c42f8b9ed545",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:1d532a3f-d2f2-4331-8a39-1f17fa9cb5c0",
+        "@id": "urn:7e9b4723-0041-48af-a1c6-2f7853be68af",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -373,7 +373,7 @@
         }
       },
       {
-        "@id": "urn:5d1480fb-2652-4b92-8dff-7ad31fd4f73a",
+        "@id": "urn:e7b3d762-06a3-4ab8-b5a0-36d56b8ca686",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -381,7 +381,7 @@
         }
       },
       {
-        "@id": "urn:a32dfe88-22f5-4e9b-b025-9892df2eb81a",
+        "@id": "urn:c2e3c6f9-ef9b-4224-81c0-d12f2387a4ab",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -389,7 +389,7 @@
         }
       },
       {
-        "@id": "urn:3daddd79-e238-4f90-a46e-a7ee2638e983",
+        "@id": "urn:b8510365-9a63-4fce-a710-1fac7f827369",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run+tlrc",
         "digest": {
@@ -397,7 +397,7 @@
         }
       },
       {
-        "@id": "urn:ae14ed40-d28f-491f-ad7f-f9364a2daeca",
+        "@id": "urn:c5509615-585c-4c3e-89d6-842233802aa1",
         "Label": "dfile.r*.1D",
         "AtLocation": "dfile.r*.1D",
         "digest": {
@@ -405,7 +405,7 @@
         }
       },
       {
-        "@id": "urn:c5da5c16-852c-4a75-a6e6-f70fcc9bc766",
+        "@id": "urn:01c14a4b-ed94-4cd7-aecf-b1cf5dbd0636",
         "Label": "rm.epi.min.r01",
         "AtLocation": "rm.epi.min.r01+tlrc",
         "digest": {
@@ -413,7 +413,7 @@
         }
       },
       {
-        "@id": "urn:f63bd3cb-5e25-43e7-9b62-0a6b714b9fd0",
+        "@id": "urn:5ede64d7-ed6a-43e8-9d84-48c85ba3337d",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run+tlrc",
         "digest": {
@@ -421,7 +421,7 @@
         }
       },
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@@ -800,124 +800,124 @@
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@@ -925,34 +925,34 @@
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-        "@id": "urn:0f0d8d27-624e-4177-a4ce-0e4655ee2e68",
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@@ -960,10 +960,10 @@
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diff --git a/examples/from_parsers/afni/afni_hrf_gammadiff_proc.jsonld b/examples/from_parsers/afni/afni_hrf_gammadiff_proc.jsonld
index 5220b5a9b..989d12afb 100644
--- a/examples/from_parsers/afni/afni_hrf_gammadiff_proc.jsonld
+++ b/examples/from_parsers/afni/afni_hrf_gammadiff_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
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-        "@id": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "@id": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
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@@ -13,569 +13,569 @@
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         "Label": "Make directory",
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+        "@id": "urn:6e9e8852-ec0b-4feb-aae6-63f620e09c84",
         "Label": "Make directory",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
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         "Parameters": {},
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-          "urn:c2d9b3d0-5ae6-4634-b4c9-a5e740cca916"
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+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
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         "Parameters": {},
         "Used": [
-          "urn:46f33eb6-7317-42e6-a994-c29dbc9faef0"
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-          "urn:adfa386a-510e-4ec5-83be-ac50b3e2c9d1"
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-          "urn:d8be2762-fa93-4e54-8cee-c1cf4627ab75"
+          "urn:444b3aef-bed6-43e5-820a-7d79e2d179c9",
+          "urn:8975ee46-f44f-4c13-81e8-c5cd1a35d9fa"
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-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
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-        "@id": "urn:05b870ed-40cd-4258-8683-66de67797871",
+        "@id": "urn:af761f7e-80af-4622-bb60-411065c9e5d1",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:81c8a9f5-4dfc-44f7-be05-3e1b7699f97b"
+          "urn:4ce7cdba-5a0b-4246-8ee3-840b44f92bf6"
         ]
       },
       {
-        "@id": "urn:14f92534-636d-49c9-9e96-ca067ef99a0b",
+        "@id": "urn:e6aad8a6-9056-4e8e-b591-ba2a4094b8a0",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:81c8a9f5-4dfc-44f7-be05-3e1b7699f97b"
+          "urn:4ce7cdba-5a0b-4246-8ee3-840b44f92bf6"
         ]
       },
       {
-        "@id": "urn:4c4ed23d-2299-4b12-b063-c04a871e1966",
+        "@id": "urn:fd1716f5-9c7a-4f67-869a-1c5dd7aea8ca",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:f96979bc-1e21-41d2-8b4e-b0f96a988a48"
+          "urn:40b50dc9-2f0a-4a54-8f74-308039d60ecd"
         ]
       },
       {
-        "@id": "urn:8c1eca6e-2b08-4870-8d0b-25bc020fa0dd",
+        "@id": "urn:9b4436bc-3b0f-4b8f-ba17-18aac004a520",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:2a60b70d-67ed-47ea-aeba-2fe7d895532f",
-          "urn:81c8a9f5-4dfc-44f7-be05-3e1b7699f97b",
-          "urn:f6b49186-f762-42bb-858b-0b2f705f8bb9"
+          "urn:0a7647fc-2cdc-4fa3-b082-e96971482634",
+          "urn:4ce7cdba-5a0b-4246-8ee3-840b44f92bf6",
+          "urn:c073483a-c70c-494e-bc37-5a2327064f06"
         ]
       },
       {
-        "@id": "urn:458d4e4d-f2a2-474f-a12e-e68162d06b49",
+        "@id": "urn:2a93e9d8-8d47-40af-8bcf-eaf983b9add1",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:2a60b70d-67ed-47ea-aeba-2fe7d895532f",
-          "urn:94b6712b-fc9d-4cc5-b3aa-bc16d0172491",
-          "urn:f6b49186-f762-42bb-858b-0b2f705f8bb9"
+          "urn:0a7647fc-2cdc-4fa3-b082-e96971482634",
+          "urn:c073483a-c70c-494e-bc37-5a2327064f06",
+          "urn:c879c188-eaba-4d99-a76b-7031e921db86"
         ]
       },
       {
-        "@id": "urn:ed02ec72-fcfc-42a4-af93-12f4fbf72466",
+        "@id": "urn:b1d3f413-1a3f-4a66-8cee-b24bfdb8d5ea",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:28f7dfc8-ec0e-4a14-9234-681d2536b95a"
+          "urn:075b19d7-cccb-49e7-a9c8-4a0abc906eab"
         ]
       },
       {
-        "@id": "urn:8b944e7f-652b-453c-9868-e2dd5303bb49",
+        "@id": "urn:bfc5f78d-f8d3-4eee-8fd5-8835562215ba",
         "Label": "cat",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:a52702c4-4b36-4085-97a9-8d90ed25e7c5"
+          "urn:d48a8eec-56b1-4aa8-af22-922fc27586e6"
         ]
       },
       {
-        "@id": "urn:15455f94-530a-460a-a7b6-2130b0cc78ee",
+        "@id": "urn:7ab095d7-8d81-4df7-aa9f-2167bce867fc",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:6093bb5e-5d55-4dce-98ad-91ef62e3993f"
+          "urn:c504956f-4b7b-4992-abbd-46b5fc4f8a21"
         ]
       },
       {
-        "@id": "urn:58a1acaf-fb60-40ba-9f05-b1c92504a557",
+        "@id": "urn:5f12525b-764a-4493-b764-0c8b7057963b",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:da1814d2-4009-410a-bd5a-8ad1af6ec820",
-          "urn:ab05a81a-6316-4ff1-aa5b-f65dc614b38e"
+          "urn:a92420ab-a033-4844-a6f7-39500db2e482",
+          "urn:d749afb2-7262-4434-9504-06cb313cac64"
         ]
       },
       {
-        "@id": "urn:785876fb-f04d-4de2-a373-bff7fdd779d8",
+        "@id": "urn:a04f7934-f7bc-4170-b2eb-5c6c732b5848",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:2a60b70d-67ed-47ea-aeba-2fe7d895532f"
+          "urn:0a7647fc-2cdc-4fa3-b082-e96971482634"
         ]
       },
       {
-        "@id": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
+        "@id": "urn:314e11c6-9e73-48fd-80b8-5255796a06d1",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:61ad2da1-fa96-453d-8ea2-ffdaf4e76f3f"
+          "urn:44d37560-44a4-474b-a529-7de437cb6c75"
         ]
       },
       {
-        "@id": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
+        "@id": "urn:a6811528-b35b-46f8-8c64-c27db6cc51f3",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:9ab5110c-2de7-4074-8985-e7f7624951ff",
-          "urn:3a4ffa60-001e-4864-aabd-3fa1bda050cb"
+          "urn:35b68be2-b883-4bde-9698-c01bc4e682f7",
+          "urn:79083b6e-477d-460c-a565-c07d683b963f"
         ]
       },
       {
-        "@id": "urn:a795b30c-e2ac-4510-8f49-b5d49d5a2666",
+        "@id": "urn:b1798fa5-41c3-4c32-af33-ba038526e4b9",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:73f49fa2-a12e-4869-9bfd-c898044cd642"
+          "urn:ffb2acef-8473-4ab4-8b06-f476123def32"
         ]
       },
       {
-        "@id": "urn:28f3ad86-7bbc-4bad-935d-7d4416682ba1",
+        "@id": "urn:f1ad28d0-6c5d-4619-ac2a-c7f4bee41ea6",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:b431f690-cccb-41b1-9946-d52280b64525",
+        "@id": "urn:cc3659dd-8933-41f9-b132-b2a64e91ffaf",
         "Label": "3dresample",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:2a60b70d-67ed-47ea-aeba-2fe7d895532f",
-          "urn:a9ebcc48-ff9b-43ff-a6e2-e563f373103c"
+          "urn:0a7647fc-2cdc-4fa3-b082-e96971482634",
+          "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e"
         ]
       },
       {
-        "@id": "urn:3712e048-0291-4277-83db-2089489d7987",
+        "@id": "urn:89d4725b-2aa6-443d-a502-65b941ec8bdc",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:76e92e1e-d7b6-44bc-ba6f-020b033a4523"
+          "urn:16b45600-eb00-4a51-a6be-8d47329b96a3"
         ]
       },
       {
-        "@id": "urn:682b3ad7-d506-48e4-924b-4aebb0a78f3c",
+        "@id": "urn:f58e75d3-583d-4af3-8ec2-e280fef8a6c7",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:e55cc102-2c9b-412f-872d-4338f24b718f",
-          "urn:3fe69852-da91-41b2-b340-855464860260"
+          "urn:e5081baa-1acc-4ca1-b4e0-b504d7fed955",
+          "urn:ff6a8b57-ac8c-4df4-b617-4b3a0b2bc2b9"
         ]
       },
       {
-        "@id": "urn:17d2cc88-4bae-4444-9530-b8c84f76341b",
+        "@id": "urn:cd99b9e2-3b36-46e3-95ec-8cb54f617d02",
         "Label": "3ddot",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:e55cc102-2c9b-412f-872d-4338f24b718f",
-          "urn:3fe69852-da91-41b2-b340-855464860260"
+          "urn:e5081baa-1acc-4ca1-b4e0-b504d7fed955",
+          "urn:ff6a8b57-ac8c-4df4-b617-4b3a0b2bc2b9"
         ]
       },
       {
-        "@id": "urn:e4f4fc74-1ff9-4ecb-b55d-1dbdc28d771a",
+        "@id": "urn:e43a2d82-17b0-4519-90f0-4792c2240a1b",
         "Label": "3dresample",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/cmaumet/Softs/external/AFNI/macosx_10.7_Intel_64/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:f8600926-68f6-46c9-bf0e-93641c333839",
-          "urn:a9ebcc48-ff9b-43ff-a6e2-e563f373103c"
+          "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+          "urn:7aa0c7ac-09a1-460d-9ee8-49068220f007"
         ]
       },
       {
-        "@id": "urn:ab7c113a-12d1-4e0a-b4bf-bb15c9087274",
+        "@id": "urn:25110572-7c22-4331-a8df-051904b8d272",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:92942894-91d4-46da-a851-212428e5ffd6"
+          "urn:e27a29e8-02ac-43cb-8f10-e82b13654dc8"
         ]
       },
       {
-        "@id": "urn:13201da7-d050-4ca2-bee2-a1986bb0104d",
+        "@id": "urn:23978496-a117-4025-93da-ba42dba39567",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:73f49fa2-a12e-4869-9bfd-c898044cd642"
+          "urn:ffb2acef-8473-4ab4-8b06-f476123def32"
         ]
       },
       {
-        "@id": "urn:644ce011-3d1e-4984-ad9c-f5771f000747",
+        "@id": "urn:aa934436-fe38-49ec-a181-f803adf4cb19",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:73f49fa2-a12e-4869-9bfd-c898044cd642",
-          "urn:aec7fb9b-2ee8-4f2d-b523-9da2972acaab",
-          "urn:ab05a81a-6316-4ff1-aa5b-f65dc614b38e"
+          "urn:a92420ab-a033-4844-a6f7-39500db2e482",
+          "urn:bc49a77f-927c-4ccd-8959-e00cae2dbe65",
+          "urn:ffb2acef-8473-4ab4-8b06-f476123def32"
         ]
       },
       {
-        "@id": "urn:32250610-6808-46b2-8175-f03e3be56a9a",
+        "@id": "urn:d5e3f198-a9c4-4128-a3bc-7636be079ef3",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:4eb45450-e358-46a7-86ee-cfdb9902415e"
+          "urn:604a1e3b-15de-497b-a525-ca9bd99f2a09"
         ]
       },
       {
-        "@id": "urn:b9d00692-dc98-4bf8-b0e2-d7c35a873be5",
+        "@id": "urn:d6edc215-1f9b-4996-8ac6-215c125316b0",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:4eb45450-e358-46a7-86ee-cfdb9902415e"
+          "urn:604a1e3b-15de-497b-a525-ca9bd99f2a09"
         ]
       },
       {
-        "@id": "urn:b4269c4f-f3a9-4fde-ba7c-9e73f98efa77",
+        "@id": "urn:ab38c57b-f9d1-418f-b7da-f63d7457eea2",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:4eb45450-e358-46a7-86ee-cfdb9902415e"
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         "Label": "3dDeconvolve",
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+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'SPMG1(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:dcbb3e88-d6dd-4ce7-81f0-f836944dfb88"
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+        "@id": "urn:37331043-f224-4bc0-8715-170d6cf9f55f",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
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         "Parameters": {},
         "Used": [
-          "urn:162b1d46-bf30-462d-be37-9e63f1bbdc34"
+          "urn:17b28bd3-87c8-4b49-a4bb-147ac5877515"
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-        "@id": "urn:ed09bfc0-4e0f-4033-bdc5-2697ab125380",
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         "Label": "3dTcat",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
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+          "urn:049ce5bc-724a-4c47-9d72-b77a52f94361"
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
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         "Parameters": {},
         "Used": [
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         "Label": "3dTstat",
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         "Parameters": {},
         "Used": [
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         "Label": "3dcalc",
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         "Parameters": {},
         "Used": [
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-          "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
-          "urn:a9ebcc48-ff9b-43ff-a6e2-e563f373103c"
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         "Label": "3dTnorm",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
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         "Label": "3dmaskave",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
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         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
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         "Label": "3dcalc",
-        "AssociatedWith": "urn:f39dd174-9880-4dbd-93b8-049bcd504001",
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         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
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-          "urn:6edb1340-d225-442b-bb95-c272df01c0da"
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         "Parameters": {},
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         "Parameters": {},
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         "Parameters": {},
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         "Parameters": {},
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         "Label": "1dcat",
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+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:0df00aab-8630-4a0a-87d4-d948ff20b516"
+          "urn:8d264a79-1906-4b4e-a5a3-d3f6b3e0c794"
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+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
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+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:a9ebcc48-ff9b-43ff-a6e2-e563f373103c"
+          "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e"
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         "Label": "3dClustSim",
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+        "AssociatedWith": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
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         "Parameters": {
           "-mot_limit": "0.3",
@@ -586,22 +586,22 @@
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@@ -609,7 +609,7 @@
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@@ -617,13 +617,13 @@
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@@ -631,13 +631,13 @@
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@@ -645,13 +645,13 @@
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@@ -659,16 +659,16 @@
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@@ -1032,25 +1032,25 @@
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@@ -1058,34 +1058,34 @@
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@@ -1093,25 +1093,25 @@
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@@ -1119,16 +1119,16 @@
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@@ -1136,16 +1136,16 @@
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@@ -1153,7 +1153,7 @@
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@@ -1161,16 +1161,16 @@
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@@ -1178,25 +1178,25 @@
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@@ -1204,16 +1204,16 @@
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@@ -1238,16 +1238,16 @@
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@@ -1255,16 +1255,16 @@
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@@ -1272,16 +1272,16 @@
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@@ -1289,52 +1289,52 @@
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@@ -1342,10 +1342,10 @@
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diff --git a/examples/from_parsers/afni/afni_hrf_gammadiff_proc_bloc.jsonld b/examples/from_parsers/afni/afni_hrf_gammadiff_proc_bloc.jsonld
index 1c0574a3b..0767b05d8 100644
--- a/examples/from_parsers/afni/afni_hrf_gammadiff_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_hrf_gammadiff_proc_bloc.jsonld
@@ -4,7 +4,7 @@
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@@ -13,178 +13,178 @@
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       {
-        "@id": "urn:69027950-f2cb-40ce-9227-567626ceeece",
+        "@id": "urn:b9348b48-3226-4645-a415-3e1a9dd692a3",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp /Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/afni_voxelwise_p0001/subject_results/group.DS0011/subj.sub_001/sub_001.results/stimuli/tone_counting_onset_times.txt /Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/afni_voxelwise_p0001/subject_results/group.DS0011/subj.sub_001/sub_001.results/stimuli/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy /Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/raw/ds011/sub-01/anat/sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:a2983d0b-37f1-46b8-8815-5532cf9dd9f4",
-          "urn:abe0ec4f-41d6-4388-83b3-816399fb430b",
-          "urn:4663d55e-670a-44cf-94de-46cc8a947ede"
+          "urn:4d2ad1c6-a95b-44b6-a9a5-3ccba0f424c9",
+          "urn:c66ccf72-2b79-4277-b060-f776773343dd",
+          "urn:3f82b692-071f-45d8-aa06-a7e4aab7adf9"
         ]
       },
       {
-        "@id": "urn:7f7a3a8b-9f54-4bea-9795-d3eda4abf34c",
+        "@id": "urn:865a0b41-437e-4cde-9007-f6216b7a9ed1",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat /Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/raw/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:98a3c2dc-d375-4d4b-b976-391124a62240"
+          "urn:1106d585-c944-4070-bdae-dec5389e80c7"
         ]
       },
       {
-        "@id": "urn:89fee5f0-1524-467f-8e87-4af5ee8abd9f",
+        "@id": "urn:0e625d98-8e7d-44c5-ab39-67df63fe0f85",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:cd713e3c-37f1-4250-99e4-76f14e82c809",
-          "urn:912fc0b7-8c95-48a7-8bc2-87b0dd3e9a75"
+          "urn:70c7542d-6d64-4016-b446-d2cca719d924",
+          "urn:d6c735e8-f3f8-4668-b321-fbbcc52c190c"
         ]
       },
       {
-        "@id": "urn:e3c381f4-cc66-424c-9d66-89012fc3da27",
+        "@id": "urn:f033c345-4c18-4394-8840-c59b67eb5768",
         "Label": "tshift",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:cd713e3c-37f1-4250-99e4-76f14e82c809"
+          "urn:70c7542d-6d64-4016-b446-d2cca719d924"
         ]
       },
       {
-        "@id": "urn:765c228f-2359-49dd-ad0b-097cb05b8bf1",
+        "@id": "urn:0b2d96d6-373d-48ee-8288-9b6630594059",
         "Label": "align",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:b5fb0d63-fa1e-4ec0-9133-db27e5aebc66",
-          "urn:59c02573-9cbb-4549-8392-40ca73f87032"
+          "urn:b838d882-74ce-4626-8251-dd3ed939e4ab",
+          "urn:bf9d1a7d-7cef-4802-853e-49ca35550492"
         ]
       },
       {
-        "@id": "urn:3c4a0424-458f-413d-b5ae-2f4a556b4d38",
+        "@id": "urn:f5ec68d7-1e7c-4804-9ace-55bf80bd2e7d",
         "Label": "tlrc",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:2eb2b7d0-07fa-48a4-aa75-2d4fc9e22ffc",
-          "urn:66cb6991-5040-4d8f-8f34-3e136a7bf26d",
-          "urn:0ee4fa58-9209-4ce1-8b1c-a38a4f26370c"
+          "urn:37cf3534-3f08-4542-898c-b68e1176c831",
+          "urn:d00b39d2-9a0d-42df-8274-fb083004fc64",
+          "urn:499070c6-6176-448b-8cc1-3e736dcbd1d7"
         ]
       },
       {
-        "@id": "urn:fde8bbd8-c433-4a4b-a258-4ccd58a6e898",
+        "@id": "urn:35be4c50-dd13-43e0-bb75-a6d83941a77b",
         "Label": "volreg",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:d0f77183-7ee9-4109-9528-436539caeb79",
-          "urn:d0f77183-7ee9-4109-9528-436539caeb79",
-          "urn:0ee4fa58-9209-4ce1-8b1c-a38a4f26370c",
-          "urn:409ce7cf-7d59-4ed1-b811-729bbb018e10",
-          "urn:d0f77183-7ee9-4109-9528-436539caeb79",
-          "urn:409ce7cf-7d59-4ed1-b811-729bbb018e10",
-          "urn:53090d4f-97ac-4bd9-b077-44195b0ed70d",
-          "urn:00c90417-9e57-48fe-b991-46dec5ed5a2d",
-          "urn:ad109349-69fe-4a60-b465-4d80062a78f7",
-          "urn:60152b37-01b5-4047-a0cd-84bf9e875d63",
-          "urn:10dca6cc-020e-4ffe-949a-2c2e6fb21676",
-          "urn:5e8f67b3-4bfa-406c-b4e1-369ea6560691",
-          "urn:409ce7cf-7d59-4ed1-b811-729bbb018e10",
-          "urn:6a0124c1-72b2-49ce-9672-d4fbcca25c05"
+          "urn:7e33bcfc-5cc9-4b7b-a65e-ed61463c35e0",
+          "urn:7e33bcfc-5cc9-4b7b-a65e-ed61463c35e0",
+          "urn:499070c6-6176-448b-8cc1-3e736dcbd1d7",
+          "urn:2aea3eeb-0ff4-4dac-8a69-1f3f40991856",
+          "urn:7e33bcfc-5cc9-4b7b-a65e-ed61463c35e0",
+          "urn:2aea3eeb-0ff4-4dac-8a69-1f3f40991856",
+          "urn:8dca46b5-11f1-444e-ad41-ba091f7efb80",
+          "urn:b5e5955a-6fb9-4570-ae7e-fd6a82edaba3",
+          "urn:56966405-26b8-4933-90f9-7edcc1f48413",
+          "urn:199eef1f-2c36-4516-adaf-1bb43caea9bc",
+          "urn:4f2586b4-aacf-4613-877c-dcfbc2fc6bd6",
+          "urn:87c3b7ec-ea9f-4656-83e4-9204d9e52a20",
+          "urn:2aea3eeb-0ff4-4dac-8a69-1f3f40991856",
+          "urn:7e605756-c09a-46f1-a1f9-e716ddc4f86b"
         ]
       },
       {
-        "@id": "urn:22d071c8-f1be-42e8-82f2-13a71d0f0998",
+        "@id": "urn:ea85f7a1-dba5-4224-9740-edd22cc70ed2",
         "Label": "blur",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:75c052c3-ec3a-429d-8e8a-0f96d49e1947",
-          "urn:07facf1b-b9fa-46d7-9e0d-3caabd9dbd7d"
+          "urn:372db174-a1f7-4c31-8e60-42417952ac10",
+          "urn:e453c56c-a245-49c6-a1df-805c8d4b55f8"
         ]
       },
       {
-        "@id": "urn:ac338e03-8c6a-4d36-a540-1e90fe86db13",
+        "@id": "urn:9a31dc1d-5048-4cfd-a60e-a2818eb4ae3a",
         "Label": "mask",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/cmaumet/Softs/external/AFNI/macosx_10.7_Intel_64/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:1359d5fa-6bbf-4b9c-90fe-d70df32b0c40",
-          "urn:409ce7cf-7d59-4ed1-b811-729bbb018e10",
-          "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73",
-          "urn:33d51e81-49cf-46d0-b182-d658d33a9b70",
-          "urn:159cab53-e89a-4818-81d6-b2c1dd08d0dd",
-          "urn:20cab6a3-3a47-4335-b31b-e6fdcece720f",
-          "urn:159cab53-e89a-4818-81d6-b2c1dd08d0dd",
-          "urn:20cab6a3-3a47-4335-b31b-e6fdcece720f",
-          "urn:79016ba0-b32f-4f71-b679-fd2caaa2e63d",
-          "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73",
-          "urn:08ecdced-5275-4da3-b272-5f8764017e2c"
+          "urn:205009e7-7fb9-474b-801c-9094dd613ffe",
+          "urn:2aea3eeb-0ff4-4dac-8a69-1f3f40991856",
+          "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
+          "urn:23dc9eac-7e0a-4fb9-8c41-fd286cb8e6d4",
+          "urn:2e0f436c-79e9-46a8-b63d-7dfc24beea09",
+          "urn:55245bd5-e2b9-4e3d-89f6-898175db3b62",
+          "urn:2e0f436c-79e9-46a8-b63d-7dfc24beea09",
+          "urn:55245bd5-e2b9-4e3d-89f6-898175db3b62",
+          "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
+          "urn:e77c0498-1451-4586-9da6-e9057e9481a9",
+          "urn:b4169786-f8b4-4875-a20b-b4433c296029"
         ]
       },
       {
-        "@id": "urn:e0b55535-1ed2-485c-afc5-1a0f64f8d8fe",
+        "@id": "urn:e800456c-2420-4827-9eed-950861425106",
         "Label": "scale",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:1359d5fa-6bbf-4b9c-90fe-d70df32b0c40",
-          "urn:1359d5fa-6bbf-4b9c-90fe-d70df32b0c40",
-          "urn:ff7f29d1-5dce-4121-bffc-d7f8b99ded43",
-          "urn:5e8f67b3-4bfa-406c-b4e1-369ea6560691"
+          "urn:205009e7-7fb9-474b-801c-9094dd613ffe",
+          "urn:205009e7-7fb9-474b-801c-9094dd613ffe",
+          "urn:38b5d57d-2ccc-4626-a8f7-de90eae750e4",
+          "urn:87c3b7ec-ea9f-4656-83e4-9204d9e52a20"
         ]
       },
       {
-        "@id": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "@id": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "Label": "regress",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'SPMG1(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:6a032884-a9c4-43cd-a82b-1fac1bb4e69d",
-          "urn:6a032884-a9c4-43cd-a82b-1fac1bb4e69d",
-          "urn:6a032884-a9c4-43cd-a82b-1fac1bb4e69d",
-          "urn:9f91de42-958b-4994-a2a1-cd5df69db358",
-          "urn:9f91de42-958b-4994-a2a1-cd5df69db358",
-          "urn:a30e7f05-30c9-4a93-831f-178beca06da5",
-          "urn:97899751-2ff9-4004-80b3-d252dd68e0c9",
-          "urn:4bd66238-a389-4bff-9a22-dfff5c122f77",
-          "urn:96abea8f-96a7-4c19-9aec-d37b19881a27",
-          "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73",
-          "urn:125ed038-94b2-44ff-b08a-6b20a34563d1",
-          "urn:ee75043c-c987-4b82-a8bd-a4ddd3561414",
-          "urn:0c8c8fbb-e360-4d28-b747-c286b78bef9a",
-          "urn:b78facde-a697-4422-ae67-e24ff6504011",
-          "urn:e9119f46-4f9f-4cbd-8fb9-12dd2ad9409c",
-          "urn:e1f9ff86-4ee6-48df-8546-1158ea752adb",
-          "urn:eb7102a3-b371-47c7-84a7-6f3f9fc24fa6",
-          "urn:eb7102a3-b371-47c7-84a7-6f3f9fc24fa6"
+          "urn:5caedbe9-19f3-420e-8d87-f4e20ddbcce3",
+          "urn:5caedbe9-19f3-420e-8d87-f4e20ddbcce3",
+          "urn:5caedbe9-19f3-420e-8d87-f4e20ddbcce3",
+          "urn:0f3dc826-1ad2-4563-a19a-aceadec0c483",
+          "urn:0f3dc826-1ad2-4563-a19a-aceadec0c483",
+          "urn:702737cb-6d07-4ec0-ab3a-7c31973394c1",
+          "urn:550cc2b5-46c9-4929-b5ff-1fe49fb4ccba",
+          "urn:4b85fce0-fdf4-41f3-a881-081d26c45076",
+          "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
+          "urn:af018c20-ff76-4d07-94f9-c469f5622002",
+          "urn:054bc6c2-0321-4d84-834c-72b9b82ab40b",
+          "urn:c9f0d731-8984-47bd-aa5c-6b5afb7bfda4",
+          "urn:6044c682-ea1c-4f7a-a2db-80c04d60c522",
+          "urn:74748c41-4b12-4d11-8e2e-bad321a8500f",
+          "urn:98899c4a-d46c-4fc4-8aa4-7e38f7fb0855",
+          "urn:e4884732-273d-40a3-ba49-baf3b9d8c03f",
+          "urn:b6d01152-e3cd-4131-83f8-5146de72e061",
+          "urn:b6d01152-e3cd-4131-83f8-5146de72e061"
         ]
       },
       {
-        "@id": "urn:2a1cd368-6e44-4b30-8d67-8b27e7a685ab",
+        "@id": "urn:5df370b6-d4b3-41b6-b460-d0f883c0908f",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73",
-          "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73",
-          "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73"
+          "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
+          "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
+          "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b"
         ]
       },
       {
-        "@id": "urn:2a2831db-7ec1-4ea8-9870-d9e7a2776e5b",
+        "@id": "urn:41baa5bb-621c-41c2-b8f8-a92d97097dce",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+        "AssociatedWith": "urn:c5064dd4-cae5-40c6-8fa2-e11db83cf0d0",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:b355b136-80b5-4fb9-a493-1c28a29700b2"
+          "urn:a7caa9f1-d947-4eba-957b-ab55a6acba0c"
         ]
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     "Entities": [
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-        "@id": "urn:a2983d0b-37f1-46b8-8815-5532cf9dd9f4",
+        "@id": "urn:4d2ad1c6-a95b-44b6-a9a5-3ccba0f424c9",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "/Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/afni_voxelwise_p0001/subject_results/group.DS0011/subj.sub_001/sub_001.results/stimuli/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:abe0ec4f-41d6-4388-83b3-816399fb430b",
+        "@id": "urn:c66ccf72-2b79-4277-b060-f776773343dd",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "/Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/afni_voxelwise_p0001/subject_results/group.DS0011/subj.sub_001/sub_001.results/stimuli/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:4663d55e-670a-44cf-94de-46cc8a947ede",
+        "@id": "urn:3f82b692-071f-45d8-aa06-a7e4aab7adf9",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "/Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/raw/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
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-        "@id": "urn:a46ad4e6-5621-4686-b06f-2f4c85f6fded",
+        "@id": "urn:93d47eb8-5e1d-42a1-b309-8e793f89be6f",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:69027950-f2cb-40ce-9227-567626ceeece",
+        "GeneratedBy": "urn:b9348b48-3226-4645-a415-3e1a9dd692a3",
         "digest": {
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+        "@id": "urn:6ffe9423-0397-4c77-8fa2-7f3026bc3612",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:69027950-f2cb-40ce-9227-567626ceeece"
+        "GeneratedBy": "urn:b9348b48-3226-4645-a415-3e1a9dd692a3"
       },
       {
-        "@id": "urn:6d9c0313-572b-46d4-acdc-537652e3b978",
+        "@id": "urn:0283ddd6-18de-4e36-9dfa-444141768252",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:69027950-f2cb-40ce-9227-567626ceeece"
+        "GeneratedBy": "urn:b9348b48-3226-4645-a415-3e1a9dd692a3"
       },
       {
-        "@id": "urn:ae83add3-6da7-4eae-8dfe-79cea4c4d1ac",
+        "@id": "urn:00dfd1ee-3f50-40b5-83c5-cf7cba5bd25e",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:69027950-f2cb-40ce-9227-567626ceeece"
+        "GeneratedBy": "urn:b9348b48-3226-4645-a415-3e1a9dd692a3"
       },
       {
-        "@id": "urn:98a3c2dc-d375-4d4b-b976-391124a62240",
+        "@id": "urn:1106d585-c944-4070-bdae-dec5389e80c7",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/Users/cmaumet/Projects/Data_sharing/dev/nidmresults-examples/raw/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:3cd9afa2-db8f-4e97-8362-708061f8f699",
+        "@id": "urn:ebcb8b5e-74e4-4989-8a38-bbe0a7e04c4c",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:7f7a3a8b-9f54-4bea-9795-d3eda4abf34c"
+        "GeneratedBy": "urn:865a0b41-437e-4cde-9007-f6216b7a9ed1"
       },
       {
-        "@id": "urn:cd713e3c-37f1-4250-99e4-76f14e82c809",
+        "@id": "urn:70c7542d-6d64-4016-b446-d2cca719d924",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:912fc0b7-8c95-48a7-8bc2-87b0dd3e9a75",
+        "@id": "urn:d6c735e8-f3f8-4668-b321-fbbcc52c190c",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:63a082a5-9059-43ac-834b-1a3d36baad81",
+        "@id": "urn:fb764185-700a-4113-9c52-21e98e41a6e6",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:89fee5f0-1524-467f-8e87-4af5ee8abd9f",
+        "GeneratedBy": "urn:0e625d98-8e7d-44c5-ab39-67df63fe0f85",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:38bb386d-c8e8-4b21-ba22-678b7a5e04c3",
+        "@id": "urn:33261e7d-11e0-4e76-96e4-af01060aa41a",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:89fee5f0-1524-467f-8e87-4af5ee8abd9f",
+        "GeneratedBy": "urn:0e625d98-8e7d-44c5-ab39-67df63fe0f85",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:cd713e3c-37f1-4250-99e4-76f14e82c809",
+        "@id": "urn:70c7542d-6d64-4016-b446-d2cca719d924",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:37437965-1cad-4a6c-b415-8573d8824906",
+        "@id": "urn:dc40a6cb-7781-48f1-bcc2-4b95730e1eac",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:e3c381f4-cc66-424c-9d66-89012fc3da27",
+        "GeneratedBy": "urn:f033c345-4c18-4394-8840-c59b67eb5768",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
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-        "@id": "urn:b5fb0d63-fa1e-4ec0-9133-db27e5aebc66",
+        "@id": "urn:bf9d1a7d-7cef-4802-853e-49ca35550492",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:59c02573-9cbb-4549-8392-40ca73f87032",
+        "@id": "urn:b838d882-74ce-4626-8251-dd3ed939e4ab",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:2ecd0a9e-1a8d-4673-9477-d000fa050f71",
+        "@id": "urn:70839570-4a1c-41df-8648-f40475cb1c1c",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:765c228f-2359-49dd-ad0b-097cb05b8bf1",
+        "GeneratedBy": "urn:0b2d96d6-373d-48ee-8288-9b6630594059",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
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       {
-        "@id": "urn:2eb2b7d0-07fa-48a4-aa75-2d4fc9e22ffc",
+        "@id": "urn:d00b39d2-9a0d-42df-8274-fb083004fc64",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -333,7 +333,7 @@
         }
       },
       {
-        "@id": "urn:66cb6991-5040-4d8f-8f34-3e136a7bf26d",
+        "@id": "urn:37cf3534-3f08-4542-898c-b68e1176c831",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -341,7 +341,7 @@
         }
       },
       {
-        "@id": "urn:0ee4fa58-9209-4ce1-8b1c-a38a4f26370c",
+        "@id": "urn:499070c6-6176-448b-8cc1-3e736dcbd1d7",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -349,16 +349,16 @@
         }
       },
       {
-        "@id": "urn:6a0124c1-72b2-49ce-9672-d4fbcca25c05",
+        "@id": "urn:7e605756-c09a-46f1-a1f9-e716ddc4f86b",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:3c4a0424-458f-413d-b5ae-2f4a556b4d38",
+        "GeneratedBy": "urn:f5ec68d7-1e7c-4804-9ace-55bf80bd2e7d",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
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       {
-        "@id": "urn:0ee4fa58-9209-4ce1-8b1c-a38a4f26370c",
+        "@id": "urn:499070c6-6176-448b-8cc1-3e736dcbd1d7",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -366,16 +366,16 @@
         }
       },
       {
-        "@id": "urn:6a0124c1-72b2-49ce-9672-d4fbcca25c05",
+        "@id": "urn:7e605756-c09a-46f1-a1f9-e716ddc4f86b",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:3c4a0424-458f-413d-b5ae-2f4a556b4d38",
+        "GeneratedBy": "urn:f5ec68d7-1e7c-4804-9ace-55bf80bd2e7d",
         "digest": {
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-        "@id": "urn:d0f77183-7ee9-4109-9528-436539caeb79",
+        "@id": "urn:7e33bcfc-5cc9-4b7b-a65e-ed61463c35e0",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -383,7 +383,7 @@
         }
       },
       {
-        "@id": "urn:409ce7cf-7d59-4ed1-b811-729bbb018e10",
+        "@id": "urn:2aea3eeb-0ff4-4dac-8a69-1f3f40991856",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -391,7 +391,7 @@
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       },
       {
-        "@id": "urn:53090d4f-97ac-4bd9-b077-44195b0ed70d",
+        "@id": "urn:8dca46b5-11f1-444e-ad41-ba091f7efb80",
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         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -399,7 +399,7 @@
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       {
-        "@id": "urn:00c90417-9e57-48fe-b991-46dec5ed5a2d",
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         "digest": {
@@ -407,7 +407,7 @@
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       {
-        "@id": "urn:ad109349-69fe-4a60-b465-4d80062a78f7",
+        "@id": "urn:56966405-26b8-4933-90f9-7edcc1f48413",
         "Label": "dfile.r*.1D",
         "AtLocation": "dfile.r*.1D",
         "digest": {
@@ -415,7 +415,7 @@
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       {
-        "@id": "urn:60152b37-01b5-4047-a0cd-84bf9e875d63",
+        "@id": "urn:199eef1f-2c36-4516-adaf-1bb43caea9bc",
         "Label": "rm.epi.min.r01",
         "AtLocation": "rm.epi.min.r01+tlrc",
         "digest": {
@@ -423,7 +423,7 @@
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       },
       {
-        "@id": "urn:10dca6cc-020e-4ffe-949a-2c2e6fb21676",
+        "@id": "urn:4f2586b4-aacf-4613-877c-dcfbc2fc6bd6",
         "Label": "rm.epi.nomask.r$run",
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         "digest": {
@@ -431,7 +431,7 @@
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       },
       {
-        "@id": "urn:5e8f67b3-4bfa-406c-b4e1-369ea6560691",
+        "@id": "urn:87c3b7ec-ea9f-4656-83e4-9204d9e52a20",
         "Label": "mask_epi_extents",
         "AtLocation": "mask_epi_extents+tlrc",
         "digest": {
@@ -439,97 +439,97 @@
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       {
-        "@id": "urn:eb442016-d304-41a3-bc43-10b5afeb249c",
+        "@id": "urn:41d4566f-82c5-461c-b8a2-71911963c854",
         "Label": "mat.r$run.vr.aff12.1D",
         "AtLocation": "mat.r$run.vr.aff12.1D",
-        "GeneratedBy": "urn:fde8bbd8-c433-4a4b-a258-4ccd58a6e898",
+        "GeneratedBy": "urn:35be4c50-dd13-43e0-bb75-a6d83941a77b",
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+        "@id": "urn:6df1bfc5-ec9b-4942-9652-579daee2b106",
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         "AtLocation": "rm.epi.all1",
-        "GeneratedBy": "urn:fde8bbd8-c433-4a4b-a258-4ccd58a6e898",
+        "GeneratedBy": "urn:35be4c50-dd13-43e0-bb75-a6d83941a77b",
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+        "@id": "urn:ab39a673-1c0e-4860-9d10-b9a547666100",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run",
-        "GeneratedBy": "urn:fde8bbd8-c433-4a4b-a258-4ccd58a6e898",
+        "GeneratedBy": "urn:35be4c50-dd13-43e0-bb75-a6d83941a77b",
         "digest": {
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-        "GeneratedBy": "urn:fde8bbd8-c433-4a4b-a258-4ccd58a6e898",
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           "sha256": "431314eb75d086ce08373b3a374427969e89414c4a2d607e449c1f6485c547af"
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       {
-        "@id": "urn:f81c36df-64ce-49ff-b928-c7ddf0b4c8c3",
+        "@id": "urn:8c989260-b8e4-4730-84f6-c9f317b5e801",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
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       {
-        "@id": "urn:7f65789c-9a04-408a-b158-bb43c2962ac1",
+        "@id": "urn:877884bd-f37b-49d8-8854-b945da56459c",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
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           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
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       },
       {
-        "@id": "urn:4082dae8-2701-4657-b4b2-bffea6e63154",
+        "@id": "urn:7e6793d1-0414-4d9b-af8c-a9dd3f28798d",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
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       },
       {
-        "@id": "urn:5387ccb8-e208-40b3-a494-36f49a5034bc",
+        "@id": "urn:6051bff2-78e1-4dcf-b920-720092259faa",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
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       },
       {
-        "@id": "urn:dc4a1b15-456b-431f-aaae-ad30732e0aba",
+        "@id": "urn:415d2eff-a2e6-4ce0-b03b-4590dc0b938f",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
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       },
       {
-        "@id": "urn:b9ef405b-19bd-4f2b-b779-be6953f92976",
+        "@id": "urn:7aad8cde-f615-412f-8471-4c996f88ed9d",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
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       },
       {
-        "@id": "urn:a0096f78-1a37-4831-9297-028f78e5f5bb",
+        "@id": "urn:71b058b4-2de9-4859-84b4-b860b34fd6ba",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
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       },
       {
-        "@id": "urn:96e62f9d-b1bc-4d08-8a56-80c4267c1dde",
+        "@id": "urn:4cf18a5d-9510-4dcf-85c4-97b4ab57855f",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:02351260-94bb-4c70-a587-11e2b342d24a",
+        "@id": "urn:083d8661-48cc-477b-8d5e-fa8106d0bfbc",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:4942dc4f-78e8-4afe-90ea-4fed7af53baa",
+        "GeneratedBy": "urn:539d468e-44bf-4431-95d2-12c1c8d23825",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:bc20ba5a-1ad1-4a2d-9838-46ea40e93d73",
+        "@id": "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
         }
       },
       {
-        "@id": "urn:1297dbd7-23fe-4261-a4b7-62ac5775ae55",
+        "@id": "urn:d8954007-4612-40b0-8ded-1060a7c2d47c",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:2a1cd368-6e44-4b30-8d67-8b27e7a685ab",
+        "GeneratedBy": "urn:5df370b6-d4b3-41b6-b460-d0f883c0908f",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:f52b1da6-54af-4ef5-b883-eef4570d66b1",
+        "@id": "urn:53fa78a6-d8f2-471e-a4fa-aa9fa8f08b36",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:2a1cd368-6e44-4b30-8d67-8b27e7a685ab",
+        "GeneratedBy": "urn:5df370b6-d4b3-41b6-b460-d0f883c0908f",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:f0482e54-ccc8-49e0-aed4-703c4a8469ee",
+        "@id": "urn:af72a928-98bb-4d48-8b53-202d48c5dc9d",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:2a1cd368-6e44-4b30-8d67-8b27e7a685ab",
+        "GeneratedBy": "urn:5df370b6-d4b3-41b6-b460-d0f883c0908f",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:b355b136-80b5-4fb9-a493-1c28a29700b2",
+        "@id": "urn:a7caa9f1-d947-4eba-957b-ab55a6acba0c",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:6134bd82-c6ba-4031-a0f6-1da02585d5eb",
+        "@id": "urn:9b7f5f79-f24a-4919-9491-b51f9162268c",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:2a2831db-7ec1-4ea8-9870-d9e7a2776e5b",
+        "GeneratedBy": "urn:41baa5bb-621c-41c2-b8f8-a92d97097dce",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_hrf_tent_proc.jsonld b/examples/from_parsers/afni/afni_hrf_tent_proc.jsonld
index 4030e427d..292a7297e 100644
--- a/examples/from_parsers/afni/afni_hrf_tent_proc.jsonld
+++ b/examples/from_parsers/afni/afni_hrf_tent_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "@id": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,398 +13,398 @@
     ],
     "Activities": [
       {
-        "@id": "urn:5901a2ea-b788-4e6d-ba09-54cf00c5d378",
+        "@id": "urn:05ca7568-0ad0-495e-8456-fbc9ff878699",
         "Label": "Make directory",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:18577179-bd3c-4dbb-b1eb-6a32757ed46f",
+        "@id": "urn:fbf7e4fe-124b-4f1f-8c16-6f23a9008267",
         "Label": "Make directory",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:a5bb8cf2-12e7-4eec-95de-1d20dceb808b",
+        "@id": "urn:d5b299e3-40d3-438b-86c6-f0cc41f05345",
         "Label": "cp",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "cp ./afni_tent_basis_function/tone_counting_onset_times.txt ./afni_tent_basis_function/tone_counting_probe_onsets.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:3e01c911-337e-4cb1-9895-651a60dd23c8",
-          "urn:da2217a7-aee1-45a1-a872-1a94157cd6c3"
+          "urn:e0181246-8e96-4072-b1d0-fa45343c01a2",
+          "urn:fa30e6eb-06b6-4084-8b84-2246196531dc"
         ]
       },
       {
-        "@id": "urn:41c44de2-105b-4f51-a55d-9fb249a151ed",
+        "@id": "urn:a50b87fb-4dad-4045-af1b-5fb7218f58f6",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dcopy ./afni_tent_basis_function/sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:081a9699-6a7e-408a-8e9c-e9b534aa09e3"
+          "urn:925c8d49-ab58-4373-8b9b-57ee08f09074"
         ]
       },
       {
-        "@id": "urn:798791af-c988-414c-b76e-7d4b43099a24",
+        "@id": "urn:00be7c67-3470-4109-aac0-ce3457fe672f",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_tent_basis_function/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:0ed10025-6c3b-498f-b8f7-145c6cf9829f"
+          "urn:8c7cfc61-2fa9-45fe-a568-dacccb6e4bd5"
         ]
       },
       {
-        "@id": "urn:018a0115-b414-4a52-8b4a-dcc8ddd77f1e",
+        "@id": "urn:6244338e-5df1-4496-829a-7ee82e6af2cf",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:af751746-66f4-45a0-930b-c16311618f34"
+          "urn:b85e4dd6-61b9-4c63-85f1-76c2718a8fc2"
         ]
       },
       {
-        "@id": "urn:c90da9d4-20ab-48ab-8118-62616738a6a6",
+        "@id": "urn:df7bed39-e2be-4ad5-a90e-79193079851a",
         "Label": "cat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:3bc61e8b-94a4-47fe-bbcd-8af24b2a709b"
+          "urn:776e5668-c60d-4388-8c68-0ed9953b0a58"
         ]
       },
       {
-        "@id": "urn:087295b0-2f4b-4955-a595-429f14d9d263",
+        "@id": "urn:7b9b59ac-2c07-45fc-9bd2-6f3602b9c7d6",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:af751746-66f4-45a0-930b-c16311618f34"
+          "urn:b85e4dd6-61b9-4c63-85f1-76c2718a8fc2"
         ]
       },
       {
-        "@id": "urn:9776a485-b8a2-4da8-b3d5-82c6db3edeb9",
+        "@id": "urn:a86a5837-5244-4c5e-8fec-d26819394d32",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:a43093fa-48c6-4d94-9392-d68edb15a82b",
-          "urn:0ac84f61-aaa5-4bd2-aab9-06b005e382ee"
+          "urn:2c359c35-45bf-4507-9103-a3cb62eb98ab",
+          "urn:c4d758c0-3816-4dbd-b832-1268d95dba11"
         ]
       },
       {
-        "@id": "urn:3adea154-ab1b-43fd-9127-a12ecff84884",
+        "@id": "urn:40f0ba7c-6c5e-41e3-be4d-cb51edc55892",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:449d68ef-002c-4c72-890e-200c2ca7deae",
-          "urn:ebc64236-1b61-47ad-b192-a78955142197"
+          "urn:7badca47-0d69-4d41-ab15-65dd48fbfb3c",
+          "urn:be53f424-1517-47d3-9eb0-815c5bd21f4f"
         ]
       },
       {
-        "@id": "urn:b8da4d90-84a0-4f64-9a74-fcfc3fad2a0d",
+        "@id": "urn:26057a7a-635e-49cb-b254-4df7011e5db4",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:4350385e-083c-468c-b204-ff7ce3734c0e"
+          "urn:49db383a-f7ce-4b02-b18a-301f09f8ca2e"
         ]
       },
       {
-        "@id": "urn:29ed21f5-6774-4b24-a2d2-d14b61ce59b5",
+        "@id": "urn:53290d6f-b334-45f8-8be9-24c36e53bf4f",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:5eea3323-cc6b-47fc-8e6a-c7b742bf7f6b"
+          "urn:f2efbcb4-3695-485f-8ac7-d1ef7a54cd5f"
         ]
       },
       {
-        "@id": "urn:3ccfec6d-e2ec-4c67-b5b7-d49da48a2e61",
+        "@id": "urn:8f056e6d-ce22-46c1-8a64-9b84414f4382",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:5eea3323-cc6b-47fc-8e6a-c7b742bf7f6b"
+          "urn:f2efbcb4-3695-485f-8ac7-d1ef7a54cd5f"
         ]
       },
       {
-        "@id": "urn:febe6abf-c288-4874-a95a-a550056a9d76",
+        "@id": "urn:57a1e7f9-e61f-40a5-aba2-3dc9559d3f09",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:4350385e-083c-468c-b204-ff7ce3734c0e"
+          "urn:49db383a-f7ce-4b02-b18a-301f09f8ca2e"
         ]
       },
       {
-        "@id": "urn:42705fbf-bd87-439a-89a0-6f4a24e459e3",
+        "@id": "urn:a44737d5-bbe8-45aa-bbda-e4e39c4fc2e4",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:c35adba0-7fc6-485a-9a6e-546aeb651594",
-          "urn:5eea3323-cc6b-47fc-8e6a-c7b742bf7f6b",
-          "urn:7e64c091-d21a-455a-9ce9-820676099fa1"
+          "urn:442666e8-e2d2-433a-95af-f6c9290f625d",
+          "urn:ca75045e-e6e1-4f42-b342-11111042cfd4",
+          "urn:f2efbcb4-3695-485f-8ac7-d1ef7a54cd5f"
         ]
       },
       {
-        "@id": "urn:9d2da488-b04e-4aae-b586-c30db9190292",
+        "@id": "urn:375dfc81-5906-4f37-869d-a5f3d511c1f1",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:c35adba0-7fc6-485a-9a6e-546aeb651594",
-          "urn:a8f99aa2-3c57-4b7e-a166-10298ab6e2bd",
-          "urn:7e64c091-d21a-455a-9ce9-820676099fa1"
+          "urn:1f93c51d-0af7-428b-87d0-7e9cb9f08dc1",
+          "urn:442666e8-e2d2-433a-95af-f6c9290f625d",
+          "urn:ca75045e-e6e1-4f42-b342-11111042cfd4"
         ]
       },
       {
-        "@id": "urn:0b905e9b-9dfc-4c55-ae37-69d8382573bd",
+        "@id": "urn:0d20d783-5c33-47b9-acc0-d7c6c576fd63",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:80894f34-5436-4a99-bd8c-cd28bd86ba6d"
+          "urn:96db2e6e-5e2a-4e31-8f64-424d2b4025de"
         ]
       },
       {
-        "@id": "urn:9c946d05-a7f3-449a-96dc-2b9498b9f342",
+        "@id": "urn:bbc5cfa9-fc2a-4a19-b7cd-6eff9a5300b2",
         "Label": "cat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:a15c84dd-d081-4919-b897-d046a70498ec"
+          "urn:57e1e447-c13d-4bd5-ac34-e7c12ee6ff0e"
         ]
       },
       {
-        "@id": "urn:7a795607-4194-4dc6-81cf-5d2b83bf47c1",
+        "@id": "urn:dd2943db-d18f-4c3b-b091-b2392fb26750",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:6a309aaf-e36f-4234-aee9-c8be9fdc3ddb"
+          "urn:a88fe79f-9c31-48c7-a3fd-d9aa03416151"
         ]
       },
       {
-        "@id": "urn:38192dea-15e8-4bd3-b329-644b70132660",
+        "@id": "urn:9977a87f-a67e-46c5-9208-6d52284bb1ee",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:d9c02ef8-ae4f-49fe-9649-3b35f4674c1e",
-          "urn:acd749a0-2d7c-4376-98d0-74a4bf206371"
+          "urn:02e6c51d-962c-4a4b-8b77-ca222c537f17",
+          "urn:62757c28-bbaf-44ef-b41d-fba68148f8c4"
         ]
       },
       {
-        "@id": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
+        "@id": "urn:13e01b1e-8691-4c67-8b2f-3f8a6a3dc9ec",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:c35adba0-7fc6-485a-9a6e-546aeb651594"
+          "urn:ca75045e-e6e1-4f42-b342-11111042cfd4"
         ]
       },
       {
-        "@id": "urn:07c230b3-a6ca-4c45-9fb4-593e85fba620",
+        "@id": "urn:876868d9-b90c-4dbe-b1c0-e8081a6b5783",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:74597bc2-4728-4335-95bb-81025541b4ae"
+          "urn:ffd8b61e-9219-4196-8acf-5c7e304172a6"
         ]
       },
       {
-        "@id": "urn:e4344175-20ec-4b1d-b49f-7542d37e6caa",
+        "@id": "urn:2fa48d2a-f515-483c-a7fe-9da4123ea66a",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:b144c679-bde6-4e53-9a44-652deac50c93",
-          "urn:5620cc29-8198-4896-98b0-1649f1f44ded"
+          "urn:b1dfae7b-a755-4880-bb1b-2943bb5dabe6",
+          "urn:cf35254c-cfa1-47a4-b6fa-0bbfd48f1f2e"
         ]
       },
       {
-        "@id": "urn:e9dcd1ce-f9a5-4c85-8831-8e2118f3e436",
+        "@id": "urn:edc4d342-e3a2-4a70-9590-c7cd4293922d",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:52cfe718-8d39-42bd-9e65-221b5e1969e8"
+          "urn:5f654627-6b77-4c10-801f-0e3ed2cfe857"
         ]
       },
       {
-        "@id": "urn:57c70746-bc5d-4d0f-ac6b-cf37f0e790d1",
+        "@id": "urn:3181950d-f9a7-408e-945c-c9b5103e06a7",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:a5f0a28c-5544-4428-87a1-a296cda93f56",
+        "@id": "urn:58eadaf7-7a2c-435b-aa5b-9e9e982ec4fb",
         "Label": "3dresample",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:c35adba0-7fc6-485a-9a6e-546aeb651594",
-          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
+          "urn:1b6bc660-3002-4209-b970-2bf3816c16f7",
+          "urn:ca75045e-e6e1-4f42-b342-11111042cfd4"
         ]
       },
       {
-        "@id": "urn:771015e0-2dcd-4c90-b82f-1910bff41ca0",
+        "@id": "urn:e3b4c9b6-c534-42ec-b134-a78421c8db3e",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:0ae1180e-9758-449b-96a6-998f6c382716"
+          "urn:4912dc91-d374-4b1e-b893-ce6cf0a9dc35"
         ]
       },
       {
-        "@id": "urn:c11c7f24-d9c0-48d8-9db1-fe7b3d9f617f",
+        "@id": "urn:9244d50f-27f2-4a26-9f27-b728870aaefa",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:48508920-4ce5-4213-a180-264259df2d8f",
-          "urn:146689d0-63e8-4509-9d49-e9189c351ef4"
+          "urn:aa053e5f-cbc9-42d8-abb9-b90d70044136",
+          "urn:e3c8e006-f1fa-4f68-9ded-84f0ac9e44cd"
         ]
       },
       {
-        "@id": "urn:7d6b4ad3-03f6-4196-a307-35cc3bd624d6",
+        "@id": "urn:5e66964f-ad8f-467e-b290-2956f00ef1a2",
         "Label": "3ddot",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:48508920-4ce5-4213-a180-264259df2d8f",
-          "urn:146689d0-63e8-4509-9d49-e9189c351ef4"
+          "urn:aa053e5f-cbc9-42d8-abb9-b90d70044136",
+          "urn:e3c8e006-f1fa-4f68-9ded-84f0ac9e44cd"
         ]
       },
       {
-        "@id": "urn:8331d741-04e7-4367-ab1f-0e51decade3a",
+        "@id": "urn:4aa4cd22-277d-4275-a53e-46b3d6ae63b5",
         "Label": "3dresample",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:5a483cd7-a169-420c-b682-fe81b2fb4411",
-          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
+          "urn:1b6bc660-3002-4209-b970-2bf3816c16f7",
+          "urn:5c10fcbd-bf1a-4dec-8e9e-4731987020fa"
         ]
       },
       {
-        "@id": "urn:7d4825ae-8174-4ca0-9365-17e45a88294e",
+        "@id": "urn:9d494e57-2f2f-4ae9-9cee-f3fbb0da1e60",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:8e09f9b8-62f0-43fa-9be3-9d37b3e3ffb0"
+          "urn:64fe3794-20dd-46e0-90fc-56a8b309c17d"
         ]
       },
       {
-        "@id": "urn:8a10bc3b-8f5a-48c0-86e4-74a908ff2dff",
+        "@id": "urn:4ed3ae31-2469-4eea-8d7d-094dbe725b35",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:52cfe718-8d39-42bd-9e65-221b5e1969e8"
+          "urn:5f654627-6b77-4c10-801f-0e3ed2cfe857"
         ]
       },
       {
-        "@id": "urn:ef0a17e7-2410-459e-aa85-dd27e49780c9",
+        "@id": "urn:b4a0c70b-b21e-4841-9aa4-9162e50e00f8",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:52cfe718-8d39-42bd-9e65-221b5e1969e8",
-          "urn:a5e308d1-648c-48a2-80f6-91ea050a021c",
-          "urn:acd749a0-2d7c-4376-98d0-74a4bf206371"
+          "urn:02e6c51d-962c-4a4b-8b77-ca222c537f17",
+          "urn:5f654627-6b77-4c10-801f-0e3ed2cfe857",
+          "urn:93a80c83-735c-49fe-a04f-eceeb9e9716c"
         ]
       },
       {
-        "@id": "urn:6dff238f-00fc-4ce2-9c25-489dbde3e9e7",
+        "@id": "urn:3c93a0f8-9da1-4d13-8f7b-06e36b99e86e",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:4634275d-8f31-4429-bf23-59bfd3c12e74"
+          "urn:f2562dbf-e257-4183-8d17-d2fe0c9b3b70"
         ]
       },
       {
-        "@id": "urn:602573c9-fda2-46ea-9e8a-09d94381a855",
+        "@id": "urn:1b82a18a-a7ff-46a9-afd5-53fbf7bfb66a",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:4634275d-8f31-4429-bf23-59bfd3c12e74"
+          "urn:f2562dbf-e257-4183-8d17-d2fe0c9b3b70"
         ]
       },
       {
-        "@id": "urn:3ac15d53-254f-4af7-9550-dbf93b032f0a",
+        "@id": "urn:05d99bd1-1aa9-452a-9162-19459c4a4c71",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:4634275d-8f31-4429-bf23-59bfd3c12e74"
+          "urn:f2562dbf-e257-4183-8d17-d2fe0c9b3b70"
         ]
       },
       {
-        "@id": "urn:fa158950-3648-4ab8-a9b3-b11a2c48ac17",
+        "@id": "urn:7da2e5ed-45c6-4bef-bbe6-aefef427df2c",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'TENT(0,12,7)' -stim_label 1 tone_counting -stim_times 2 stimuli/tone_counting_probe_onsets.txt 'TENT(0,14,8)' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -iresp 1 iresp_tone_counting.$subj -iresp 2 iresp_probe.$subj -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:b768f6cb-37d7-41f6-b2f8-109a5e2867c7"
+          "urn:176f5667-ceaa-47a1-ba89-54e565469876"
         ]
       },
       {
-        "@id": "urn:ab4edefa-3c5c-4fc8-bdfc-207e67b483bb",
+        "@id": "urn:111fbef2-a325-48ad-b79a-d9df47e8b19f",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:3199a455-85e5-4b30-94e5-bb3c78222246"
+          "urn:c1887097-aa8e-4ded-9839-159c05a8ff2c"
         ]
       },
       {
-        "@id": "urn:9cfed3d2-3adb-4e38-8d3e-24dda4043257",
+        "@id": "urn:f416139d-e9f8-4692-b181-11e4888553af",
         "Label": "timing_tool.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "timing_tool.py -multi_timing stimuli/tone_counting_onset_times.txt stimuli/tone_counting_probe_onsets.txt -tr 2.0 -warn_tr_stats |& tee out.TENT_warn.txt",
         "Parameters": {
           "-multi_timing": "stimuli/tone_counting_onset_times.txt",
@@ -412,164 +412,164 @@
           "-warn_tr_stats": "|&"
         },
         "Used": [
-          "urn:758ad9e2-7feb-4de4-928e-1f722e1209d0"
+          "urn:6ef54973-75ba-4848-936d-52b187bb822f"
         ]
       },
       {
-        "@id": "urn:aae0a1f9-bf6f-45ac-88dc-8bb6df4ed04d",
+        "@id": "urn:4dc7b638-37ac-46f6-88e5-3e711bd3a4cc",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:b768f6cb-37d7-41f6-b2f8-109a5e2867c7"
+          "urn:176f5667-ceaa-47a1-ba89-54e565469876"
         ]
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       {
-        "@id": "urn:27ffde96-4f34-45ef-902d-38cfe55597c7",
+        "@id": "urn:7e5f43ce-add3-40a5-9912-007b2ad1623a",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
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         "Parameters": {},
         "Used": [
-          "urn:b97857bc-8e1c-448e-82f9-d862603dac3a"
+          "urn:1bd62035-1ac7-4b81-927d-358b4ce0cb7d"
         ]
       },
       {
-        "@id": "urn:5bad2a8e-da77-4dab-8f6a-3821b93f7584",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
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         "Parameters": {},
         "Used": [
-          "urn:bd2f401f-0ae4-4b9f-bd5e-9110c7b9bbcc"
+          "urn:be1edb32-3e58-45fa-a6af-df2d560cc972"
         ]
       },
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-        "@id": "urn:5a69a194-ad94-4bf6-92b3-5ad04ca71792",
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         "Label": "3dcalc",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
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         "Parameters": {},
         "Used": [
-          "urn:5715d8a2-a421-44f5-b51f-d0ca6d0f16f8",
-          "urn:9b02e101-35be-41fb-81cb-4ebd4c4fb7ad",
-          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
+          "urn:1b6bc660-3002-4209-b970-2bf3816c16f7",
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+          "urn:b51a7314-e006-4e60-ba3c-388d5f9b5a35"
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       },
       {
-        "@id": "urn:3ab3463b-3e76-4459-b00c-557a44d4c9c9",
+        "@id": "urn:5c158d02-850a-4940-8969-7bcebd489cc2",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:69a32e1f-1ad9-4ef3-bd2f-8f089d7c77a2"
+          "urn:372e1c72-64f3-4c31-b37a-a3d62f6a7933"
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-        "@id": "urn:791a37dd-7139-4be3-8f65-6c9aeb2c26fc",
+        "@id": "urn:4752a95b-fa74-4f9d-90b6-54cd74bf4c5e",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
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         "Used": []
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-        "@id": "urn:fb2fd256-c73b-4683-a7af-081528d7939c",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:76cbe384-e9c5-4aee-a9eb-7366d46724c1"
+          "urn:fac605a0-fbab-47c9-bf38-7e7f3d8bacdb"
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-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
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-          "urn:f4774edf-b61c-4c85-8419-6b40dc2dbefb"
+          "urn:3a8bd22e-4fb4-4baf-b4e0-e6d37917798f",
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-        "@id": "urn:5c5699fb-c65a-4996-825d-ce14595563a1",
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-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:e81bd603-ebba-48a7-b6bd-4c1a05624465"
+          "urn:4e8380f4-779e-4fb0-8055-3853d04e3c3e"
         ]
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-        "@id": "urn:ae87f8ec-8897-45c2-ad21-3a90f68cc8a3",
+        "@id": "urn:b59e9cce-8a28-4ecc-b68a-079d48cca2b7",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:954374eb-04ef-496a-9bdf-67dd9f2e356f"
+          "urn:6a86f7e6-4e1a-444d-8f14-4617146d3d26"
         ]
       },
       {
-        "@id": "urn:62bdae8b-6b1c-4858-b2cf-d5c2ff2cb091",
+        "@id": "urn:5c80367c-60c3-4da6-9dbc-a232cb748064",
         "Label": "1dcat",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:954374eb-04ef-496a-9bdf-67dd9f2e356f"
+          "urn:6a86f7e6-4e1a-444d-8f14-4617146d3d26"
         ]
       },
       {
-        "@id": "urn:6a92fc75-06fa-4645-ada0-51d2db7973ff",
+        "@id": "urn:b3813f7b-85fb-4fbe-9def-1f72fb51ca15",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
+          "urn:1b6bc660-3002-4209-b970-2bf3816c16f7"
         ]
       },
       {
-        "@id": "urn:7044196c-bcff-499e-976d-e8a4ec668bd8",
+        "@id": "urn:234c02d8-5e39-4f8e-8dd2-5a7672838f05",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
+          "urn:1b6bc660-3002-4209-b970-2bf3816c16f7"
         ]
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       {
-        "@id": "urn:d187304a-f963-4ca1-9da5-8a9e7f1d6728",
+        "@id": "urn:2c6bd779-8a07-4308-993e-5c23beed49b7",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
+          "urn:1b6bc660-3002-4209-b970-2bf3816c16f7"
         ]
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-        "@id": "urn:64057351-a13d-45e8-a43f-489a5e911597",
+        "@id": "urn:43812cb6-b4d0-4133-9c67-ee4cc4b43261",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:d49417ba-b147-45e6-b7ff-817b9cb3b843"
+          "urn:751652bc-9d36-4f1b-b279-5d118517ab48"
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-        "@id": "urn:60b5705b-787c-4add-88b8-b6bd346e3b8b",
+        "@id": "urn:924f9353-8183-4a4a-be9d-b9e23d735f3f",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:63f0031d-eb88-40a7-9545-42781f2da105",
+        "AssociatedWith": "urn:972ae7c7-2673-4696-9362-ed2210c16011",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
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@@ -580,22 +580,22 @@
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     "Entities": [
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         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:5901a2ea-b788-4e6d-ba09-54cf00c5d378",
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+        "@id": "urn:edc04ecc-b0d2-4ef2-9882-a31284993675",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:18577179-bd3c-4dbb-b1eb-6a32757ed46f"
+        "GeneratedBy": "urn:fbf7e4fe-124b-4f1f-8c16-6f23a9008267"
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+        "@id": "urn:e0181246-8e96-4072-b1d0-fa45343c01a2",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_tent_basis_function/tone_counting_onset_times.txt",
         "digest": {
@@ -603,7 +603,7 @@
         }
       },
       {
-        "@id": "urn:da2217a7-aee1-45a1-a872-1a94157cd6c3",
+        "@id": "urn:fa30e6eb-06b6-4084-8b84-2246196531dc",
         "Label": "tone_counting_probe_onsets.txt",
         "AtLocation": "./afni_tent_basis_function/tone_counting_probe_onsets.txt",
         "digest": {
@@ -611,13 +611,13 @@
         }
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+        "@id": "urn:579301fe-cc07-4b7e-9f44-f990d3d76bf5",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:a5bb8cf2-12e7-4eec-95de-1d20dceb808b"
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         "Label": "sub-01_T1w.nii.gz",
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         "digest": {
@@ -625,13 +625,13 @@
         }
       },
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-        "@id": "urn:9a6b936f-0fad-4390-bf3e-71423676502a",
+        "@id": "urn:7389473f-485d-491b-8432-a4d07111e05e",
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         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:41c44de2-105b-4f51-a55d-9fb249a151ed"
+        "GeneratedBy": "urn:a50b87fb-4dad-4045-af1b-5fb7218f58f6"
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         "digest": {
@@ -639,13 +639,13 @@
         }
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-        "@id": "urn:13e5912f-05c3-476e-8f43-f0b19c8158e6",
+        "@id": "urn:859744a1-aec1-40a3-ad00-8006fdd1b111",
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         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:798791af-c988-414c-b76e-7d4b43099a24"
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@@ -653,16 +653,16 @@
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+        "@id": "urn:bc2c5ca3-552a-4da0-9bd1-0c16a94c5ac2",
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-        "GeneratedBy": "urn:018a0115-b414-4a52-8b4a-dcc8ddd77f1e",
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@@ -670,25 +670,25 @@
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-        "@id": "urn:fdcf607b-137a-4f04-807b-a47104dff267",
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-        "GeneratedBy": "urn:c90da9d4-20ab-48ab-8118-62616738a6a6",
+        "GeneratedBy": "urn:df7bed39-e2be-4ad5-a90e-79193079851a",
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@@ -696,7 +696,7 @@
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@@ -704,16 +704,16 @@
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         "Label": "motion_deriv.1D",
         "AtLocation": "motion_deriv.1D",
-        "GeneratedBy": "urn:602573c9-fda2-46ea-9e8a-09d94381a855",
+        "GeneratedBy": "urn:1b82a18a-a7ff-46a9-afd5-53fbf7bfb66a",
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       {
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         "Label": "pb04.$subj.r*.scale",
         "AtLocation": "pb04.$subj.r*.scale+tlrc.HEAD",
         "digest": {
@@ -1087,16 +1087,16 @@
         }
       },
       {
-        "@id": "urn:3199a455-85e5-4b30-94e5-bb3c78222246",
+        "@id": "urn:c1887097-aa8e-4ded-9839-159c05a8ff2c",
         "Label": "X.xmat.1D",
         "AtLocation": "X.xmat.1D",
-        "GeneratedBy": "urn:fa158950-3648-4ab8-a9b3-b11a2c48ac17",
+        "GeneratedBy": "urn:7da2e5ed-45c6-4bef-bbe6-aefef427df2c",
         "digest": {
           "sha256": "cdbd4f4edf6fa02a9d7fcf9a3e593893438e9279c9523fbb6993630a83ad5162"
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       {
-        "@id": "urn:758ad9e2-7feb-4de4-928e-1f722e1209d0",
+        "@id": "urn:6ef54973-75ba-4848-936d-52b187bb822f",
         "Label": "tone_counting_probe_onsets.txt",
         "AtLocation": "stimuli/tone_counting_probe_onsets.txt",
         "digest": {
@@ -1104,25 +1104,25 @@
         }
       },
       {
-        "@id": "urn:59f89e09-43f9-4f11-a93f-2fc0517e82f3",
+        "@id": "urn:62724743-d128-48d9-b0a9-b8bb0f6800ac",
         "Label": "out.TENT_warn.txt",
         "AtLocation": "out.TENT_warn.txt",
-        "GeneratedBy": "urn:9cfed3d2-3adb-4e38-8d3e-24dda4043257",
+        "GeneratedBy": "urn:f416139d-e9f8-4692-b181-11e4888553af",
         "digest": {
           "sha256": "2a201f4cbdfd4812b64c875c4f1a5e844e5de0b50992f1a3abda1a40d98dc81a"
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       {
-        "@id": "urn:8880cc2d-05aa-4bcd-894f-f104ec88d7ae",
+        "@id": "urn:0ed6b3ac-dce1-4927-93ac-a8a05131d6c8",
         "Label": "all_runs.$subj",
         "AtLocation": "all_runs.$subj",
-        "GeneratedBy": "urn:aae0a1f9-bf6f-45ac-88dc-8bb6df4ed04d",
+        "GeneratedBy": "urn:4dc7b638-37ac-46f6-88e5-3e711bd3a4cc",
         "digest": {
           "sha256": "bcf27fc2e339e751d0ea9bba931674c21fd9d434ff411330f4df55f872a8cc7e"
         }
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       {
-        "@id": "urn:b97857bc-8e1c-448e-82f9-d862603dac3a",
+        "@id": "urn:1bd62035-1ac7-4b81-927d-358b4ce0cb7d",
         "Label": "all_runs.$subj",
         "AtLocation": "all_runs.$subj+tlrc\"[$ktrs]\"",
         "digest": {
@@ -1130,16 +1130,16 @@
         }
       },
       {
-        "@id": "urn:1fd805ed-6069-4b1c-b02f-478a21ca0f26",
+        "@id": "urn:473dc7c2-1028-4a00-9592-5b20a96d2401",
         "Label": "rm.signal.all",
         "AtLocation": "rm.signal.all",
-        "GeneratedBy": "urn:27ffde96-4f34-45ef-902d-38cfe55597c7",
+        "GeneratedBy": "urn:7e5f43ce-add3-40a5-9912-007b2ad1623a",
         "digest": {
           "sha256": "bda68a16c0afd5e55d4d7415c8c959e61a9aad7898dd456b0f3bb597363dde31"
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       {
-        "@id": "urn:bd2f401f-0ae4-4b9f-bd5e-9110c7b9bbcc",
+        "@id": "urn:be1edb32-3e58-45fa-a6af-df2d560cc972",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc\"[$ktrs]\"",
         "digest": {
@@ -1147,16 +1147,16 @@
         }
       },
       {
-        "@id": "urn:aae37e92-7f20-4842-85f6-e8dea5c49544",
+        "@id": "urn:28c080bc-7f9b-47fe-910f-db1304870e68",
         "Label": "rm.noise.all",
         "AtLocation": "rm.noise.all",
-        "GeneratedBy": "urn:5bad2a8e-da77-4dab-8f6a-3821b93f7584",
+        "GeneratedBy": "urn:e76c13e2-2635-44ea-9631-0f1dd0ed99d8",
         "digest": {
           "sha256": "431314eb75d086ce08373b3a374427969e89414c4a2d607e449c1f6485c547af"
         }
       },
       {
-        "@id": "urn:5715d8a2-a421-44f5-b51f-d0ca6d0f16f8",
+        "@id": "urn:34ae61a6-bf83-4b75-94ac-80cd6ee10bb3",
         "Label": "rm.signal.all",
         "AtLocation": "rm.signal.all+tlrc",
         "digest": {
@@ -1164,7 +1164,7 @@
         }
       },
       {
-        "@id": "urn:9b02e101-35be-41fb-81cb-4ebd4c4fb7ad",
+        "@id": "urn:b51a7314-e006-4e60-ba3c-388d5f9b5a35",
         "Label": "rm.noise.all",
         "AtLocation": "rm.noise.all+tlrc",
         "digest": {
@@ -1172,16 +1172,16 @@
         }
       },
       {
-        "@id": "urn:b4ea6769-7f32-4487-8166-0a5c9640f230",
+        "@id": "urn:e90526a2-5e07-4577-bf55-41f45dfa6fc8",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:5a69a194-ad94-4bf6-92b3-5ad04ca71792",
+        "GeneratedBy": "urn:7f0c37a4-8362-411a-9cab-3f45e445a60d",
         "digest": {
           "sha256": "303f183145a1e295686c08335d3b70753777cf0fa0b3f9628cf8de5471359a00"
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       },
       {
-        "@id": "urn:69a32e1f-1ad9-4ef3-bd2f-8f089d7c77a2",
+        "@id": "urn:372e1c72-64f3-4c31-b37a-a3d62f6a7933",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc",
         "digest": {
@@ -1189,25 +1189,25 @@
         }
       },
       {
-        "@id": "urn:ba9a1f75-9c10-4b6d-a32e-c00a9bf2b14d",
+        "@id": "urn:5ec203ef-e9b5-4e08-97a5-1a212b51a7c7",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:3ab3463b-3e76-4459-b00c-557a44d4c9c9",
+        "GeneratedBy": "urn:5c158d02-850a-4940-8969-7bcebd489cc2",
         "digest": {
           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
         }
       },
       {
-        "@id": "urn:f4774edf-b61c-4c85-8419-6b40dc2dbefb",
+        "@id": "urn:3a8bd22e-4fb4-4baf-b4e0-e6d37917798f",
         "Label": "gmean.errts.unit.1D",
         "AtLocation": "gmean.errts.unit.1D",
-        "GeneratedBy": "urn:791a37dd-7139-4be3-8f65-6c9aeb2c26fc",
+        "GeneratedBy": "urn:4752a95b-fa74-4f9d-90b6-54cd74bf4c5e",
         "digest": {
           "sha256": "a35a66cce2e2d487762823c197ca1edc450a9887f46f125826b69c5021662f95"
         }
       },
       {
-        "@id": "urn:76cbe384-e9c5-4aee-a9eb-7366d46724c1",
+        "@id": "urn:fac605a0-fbab-47c9-bf38-7e7f3d8bacdb",
         "Label": "out.gcor.1D",
         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1215,16 +1215,16 @@
         }
       },
       {
-        "@id": "urn:2de594c7-2977-4289-b1b5-47d1a9521824",
+        "@id": "urn:5fb0915d-c741-4a5b-802d-8b14cff8a199",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:fb2fd256-c73b-4683-a7af-081528d7939c",
+        "GeneratedBy": "urn:57a6d013-8c5a-4f73-903c-31102e6983f5",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
         }
       },
       {
-        "@id": "urn:efc1dbaf-a1c8-49b6-b914-9345dbbaebc0",
+        "@id": "urn:6ee4d50e-a3d9-4baa-8eca-fcc3e59e5f99",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit+tlrc",
         "digest": {
@@ -1232,16 +1232,16 @@
         }
       },
       {
-        "@id": "urn:0dd56933-46e0-4b97-a391-60e35d8c4844",
+        "@id": "urn:6a224b53-f44c-4f61-b812-ea70fd0752b1",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:bf3a439e-808c-464e-9cd8-69074082b387",
+        "GeneratedBy": "urn:eb34f522-1fa9-4daa-acde-8c9c860d2868",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:e81bd603-ebba-48a7-b6bd-4c1a05624465",
+        "@id": "urn:4e8380f4-779e-4fb0-8055-3853d04e3c3e",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1249,16 +1249,16 @@
         }
       },
       {
-        "@id": "urn:1f43f5ac-38dd-42ab-b4b0-784a8d398c24",
+        "@id": "urn:ae363fa1-5463-438c-952a-f4e2a0dfef11",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:5c5699fb-c65a-4996-825d-ce14595563a1",
+        "GeneratedBy": "urn:27ca8d91-5360-4293-91fb-8ab8fb65ebf9",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:954374eb-04ef-496a-9bdf-67dd9f2e356f",
+        "@id": "urn:6a86f7e6-4e1a-444d-8f14-4617146d3d26",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1266,52 +1266,52 @@
         }
       },
       {
-        "@id": "urn:34719411-7497-4c69-b992-c6f535d92daf",
+        "@id": "urn:22d5d091-3520-4934-84b2-b3c4408924f3",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:ae87f8ec-8897-45c2-ad21-3a90f68cc8a3",
+        "GeneratedBy": "urn:b59e9cce-8a28-4ecc-b68a-079d48cca2b7",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:d6d0d54a-db13-48b7-b82d-79e463ba27f8",
+        "@id": "urn:08d14d34-64e4-4de6-93bf-2be4a4840fca",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:62bdae8b-6b1c-4858-b2cf-d5c2ff2cb091",
+        "GeneratedBy": "urn:5c80367c-60c3-4da6-9dbc-a232cb748064",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:900be763-05f7-4164-9443-f02cdb6474bb",
+        "@id": "urn:4c4b965b-fede-4d18-bc71-3e9f05e713ac",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:6a92fc75-06fa-4645-ada0-51d2db7973ff",
+        "GeneratedBy": "urn:b3813f7b-85fb-4fbe-9def-1f72fb51ca15",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:3d0a295f-b783-4a04-94ac-2699c42f2e93",
+        "@id": "urn:7ce340ba-17c6-4c36-a37d-86a8f491b8cf",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:7044196c-bcff-499e-976d-e8a4ec668bd8",
+        "GeneratedBy": "urn:234c02d8-5e39-4f8e-8dd2-5a7672838f05",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:3f564b93-39c7-43e8-90e2-d000e316cec7",
+        "@id": "urn:cbe4b414-9e92-4601-a8c2-67f453efbf50",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:d187304a-f963-4ca1-9da5-8a9e7f1d6728",
+        "GeneratedBy": "urn:2c6bd779-8a07-4308-993e-5c23beed49b7",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:d49417ba-b147-45e6-b7ff-817b9cb3b843",
+        "@id": "urn:751652bc-9d36-4f1b-b279-5d118517ab48",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1319,10 +1319,10 @@
         }
       },
       {
-        "@id": "urn:b948ef91-aa46-4140-b8b7-c6abf40b9022",
+        "@id": "urn:c9548786-b53b-42ef-9721-6f3db66bcb69",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:60b5705b-787c-4add-88b8-b6bd346e3b8b",
+        "GeneratedBy": "urn:924f9353-8183-4a4a-be9d-b9e23d735f3f",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_hrf_tent_proc_bloc.jsonld b/examples/from_parsers/afni/afni_hrf_tent_proc_bloc.jsonld
index 65e795c17..dddc6d167 100644
--- a/examples/from_parsers/afni/afni_hrf_tent_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_hrf_tent_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "@id": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,177 +13,177 @@
     ],
     "Activities": [
       {
-        "@id": "urn:821222ba-cb2f-47a8-bc1b-6bb24d814509",
+        "@id": "urn:5d7bff8e-3649-4279-b652-65208d3038d8",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_tent_basis_function/tone_counting_onset_times.txt ./afni_tent_basis_function/tone_counting_probe_onsets.txt $output_dir/stimuli; 3dcopy ./afni_tent_basis_function/sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:8f33c5d7-6ef2-4d67-bb97-4e9ba7523eb4",
-          "urn:14892f7c-adf0-47e8-9fd4-163298f43062",
-          "urn:6f0bc278-4854-410a-8ce5-2c52d30c5e7b"
+          "urn:477c3f5e-630b-4bfb-a468-dfd83634e24e",
+          "urn:68d316be-cf42-4d78-9f7d-d2c54c8c323a",
+          "urn:5220bf84-809b-43c7-a990-4420937d440c"
         ]
       },
       {
-        "@id": "urn:d9607bb0-f064-4582-839b-f4e8c4476f7d",
+        "@id": "urn:ce0367ad-797e-4e33-bcbf-d139eff4002d",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_tent_basis_function/sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:24abf5de-fe14-4a83-8d3c-5e3a723811fc"
+          "urn:66eaa3e1-c9e6-4028-b12e-20f937aeb6ce"
         ]
       },
       {
-        "@id": "urn:2c47c9a9-46b1-4440-a9fe-0c7e20eaa6e2",
+        "@id": "urn:1b43c2eb-1700-47e7-85b5-7ffe6978ebfa",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:2a391bc4-ee62-4540-9f9a-d4416041bae9",
-          "urn:f9da1d1c-0b53-4cf6-8ce5-8d37378b9b39"
+          "urn:fd5f778c-cc70-438f-a89c-1a3a18f5cbc5",
+          "urn:86fbc177-9b20-4b82-a202-e72143a5fc69"
         ]
       },
       {
-        "@id": "urn:249c1113-4296-48e2-86b0-cfcfa85da03b",
+        "@id": "urn:931aa071-103b-4094-aebe-0874b1ee6b69",
         "Label": "tshift",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:2a391bc4-ee62-4540-9f9a-d4416041bae9"
+          "urn:fd5f778c-cc70-438f-a89c-1a3a18f5cbc5"
         ]
       },
       {
-        "@id": "urn:21fa3ee1-c7b0-4e1b-b2ad-1073d918da77",
+        "@id": "urn:de7ace33-d17f-4db4-985a-577e046b402c",
         "Label": "align",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:aec70b1e-a52a-4c34-afbe-58bab274e85c",
-          "urn:9233b191-251a-4f59-890e-8d49c8a317bc"
+          "urn:7e7a0226-40f9-4b01-9559-85588b3e1637",
+          "urn:83781569-a890-4a9e-ba7b-699412ca8c7b"
         ]
       },
       {
-        "@id": "urn:244fd1a8-65d6-4b1b-b5e7-9442ce7edb1c",
+        "@id": "urn:aed85e52-689e-4126-982f-f3922723d4bc",
         "Label": "tlrc",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:12c84262-3f99-41ec-a2e4-182b6dd07816",
-          "urn:579d4770-d941-467a-9f45-5d41330a8ad1",
-          "urn:35549801-9a17-47fb-97c5-a7626cf33543"
+          "urn:bd53ea95-c4bc-4c3c-874b-7a51c9d50ee6",
+          "urn:bfc45329-a862-495e-998f-ce799762b913",
+          "urn:6e74cc21-a8a0-4cfd-8d1a-dc6800a91871"
         ]
       },
       {
-        "@id": "urn:3af1ef66-0ca6-48f7-8c57-901a066d9c80",
+        "@id": "urn:706293e7-948d-45eb-98f1-39e4e201f4eb",
         "Label": "volreg",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:868c4d90-2686-4717-8992-e2f78f71982f",
-          "urn:868c4d90-2686-4717-8992-e2f78f71982f",
-          "urn:35549801-9a17-47fb-97c5-a7626cf33543",
-          "urn:c9d55f80-276d-4292-ac96-5869007a076f",
-          "urn:868c4d90-2686-4717-8992-e2f78f71982f",
-          "urn:c9d55f80-276d-4292-ac96-5869007a076f",
-          "urn:7e5081e7-c009-4256-9c58-49b629cdadd5",
-          "urn:d111a15e-cff5-49f9-b84e-91a2cd55e718",
-          "urn:2d8d1329-479a-44e0-9894-05aabc7d7877",
-          "urn:c2ba47a8-95d0-439f-b8f1-cbc216b0390f",
-          "urn:06b049a4-fd81-489d-b3c8-ce116f153f26",
-          "urn:164dec41-95f0-4393-bd4e-a73b5b698322",
-          "urn:c9d55f80-276d-4292-ac96-5869007a076f",
-          "urn:4b6329f7-79ad-4a55-aa01-952b8b7513db"
+          "urn:64015bb5-9e07-47b4-bcb5-be435bae2dfe",
+          "urn:64015bb5-9e07-47b4-bcb5-be435bae2dfe",
+          "urn:6e74cc21-a8a0-4cfd-8d1a-dc6800a91871",
+          "urn:4e78aec3-0449-4957-9b2e-e2670d3c8eac",
+          "urn:64015bb5-9e07-47b4-bcb5-be435bae2dfe",
+          "urn:4e78aec3-0449-4957-9b2e-e2670d3c8eac",
+          "urn:6c861a68-7277-43c4-9682-d741d63b9902",
+          "urn:6a705153-a8ec-4f05-afbe-482a9a6572f0",
+          "urn:083776f4-f5fb-4355-b941-9a7bfd3bab23",
+          "urn:28c9680c-6c45-4391-9154-52d690f684a3",
+          "urn:4730663e-8b30-4c67-a4ee-83156b001a52",
+          "urn:bd3aa67f-f19a-45c1-a42b-f0db9a7adf11",
+          "urn:4e78aec3-0449-4957-9b2e-e2670d3c8eac",
+          "urn:f66d99bc-74fd-4639-b97a-2f4c668d4327"
         ]
       },
       {
-        "@id": "urn:affa795a-4f4d-4f8c-b876-349682461fef",
+        "@id": "urn:c6371710-d2ff-4ab7-a394-f9917321103e",
         "Label": "blur",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:9524c744-6988-4d0c-a6c8-8553794c1251",
-          "urn:5a47a7ef-b23b-469b-abd1-b0c139c98a81"
+          "urn:0dd9b1d9-8ebf-41d2-8c63-4657a508a06e",
+          "urn:5721fa2d-2ed9-4225-b0d9-f4c9e1386dee"
         ]
       },
       {
-        "@id": "urn:c7f2560b-59db-404e-9a2d-90b38ef07d05",
+        "@id": "urn:e438808b-da32-4b02-b7ad-36446653b4ae",
         "Label": "mask",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:2ff88d43-bf8a-4d17-97fb-032d91ec1903",
-          "urn:c9d55f80-276d-4292-ac96-5869007a076f",
-          "urn:20ea2776-872a-45b1-a331-31916a8cedd1",
-          "urn:61c386a1-698a-46a2-a770-18e5ec43fcf8",
-          "urn:47b36bbc-f1ff-4bbd-8c90-6f05275ec35f",
-          "urn:4de0ea67-369a-452f-9771-14224cec49ca",
-          "urn:47b36bbc-f1ff-4bbd-8c90-6f05275ec35f",
-          "urn:4de0ea67-369a-452f-9771-14224cec49ca",
-          "urn:3140a577-2df8-4acd-aa3b-9982b5902b0b",
-          "urn:20ea2776-872a-45b1-a331-31916a8cedd1",
-          "urn:82e546a9-cc28-470f-b8c0-e34a95f11b29"
+          "urn:e3c6af3f-6b0b-45c1-b107-31bb8e547a31",
+          "urn:4675995f-f8e5-441b-ac89-59333de789b1",
+          "urn:4e78aec3-0449-4957-9b2e-e2670d3c8eac",
+          "urn:96a01492-17cc-45a0-b7fc-be40e68b6194",
+          "urn:3f0afd92-c8b6-4bb9-a0c8-ee92ca4f8c31",
+          "urn:57953d81-a7b2-4224-bb0e-cac27937eb14",
+          "urn:3f0afd92-c8b6-4bb9-a0c8-ee92ca4f8c31",
+          "urn:57953d81-a7b2-4224-bb0e-cac27937eb14",
+          "urn:4675995f-f8e5-441b-ac89-59333de789b1",
+          "urn:d3de02c9-142a-4528-ace7-e191b7174284",
+          "urn:3ba4bd1d-5afc-49fb-b569-10d941a25234"
         ]
       },
       {
-        "@id": "urn:7944c31b-48a2-4aac-b27a-5187a7b04bd7",
+        "@id": "urn:97410e53-4965-4ec1-8ab2-186b9801df5c",
         "Label": "scale",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:2ff88d43-bf8a-4d17-97fb-032d91ec1903",
-          "urn:2ff88d43-bf8a-4d17-97fb-032d91ec1903",
-          "urn:2aa6703f-06f2-4021-ab76-ab44c070f0e4",
-          "urn:164dec41-95f0-4393-bd4e-a73b5b698322"
+          "urn:e3c6af3f-6b0b-45c1-b107-31bb8e547a31",
+          "urn:76fa35f3-995e-4dfe-afff-9eabac5446d1",
+          "urn:bd3aa67f-f19a-45c1-a42b-f0db9a7adf11",
+          "urn:e3c6af3f-6b0b-45c1-b107-31bb8e547a31"
         ]
       },
       {
-        "@id": "urn:61794c4c-4573-4786-986e-fd6230a40307",
+        "@id": "urn:7c6a5a4a-63e5-4786-b73c-f906e5120d91",
         "Label": "regress",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'TENT(0,12,7)' -stim_label 1 tone_counting -stim_times 2 stimuli/tone_counting_probe_onsets.txt 'TENT(0,14,8)' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -iresp 1 iresp_tone_counting.$subj -iresp 2 iresp_probe.$subj -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; timing_tool.py -multi_timing stimuli/tone_counting_onset_times.txt stimuli/tone_counting_probe_onsets.txt -tr 2.0 -warn_tr_stats |& tee out.TENT_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:6bbcef9d-c59c-420e-af06-7b51ccae0169",
-          "urn:6bbcef9d-c59c-420e-af06-7b51ccae0169",
-          "urn:6bbcef9d-c59c-420e-af06-7b51ccae0169",
-          "urn:c3f501b4-ec78-4356-9676-bfff1da895e3",
-          "urn:da8bcc81-abf0-456d-8ca1-b21e04592282",
-          "urn:c3f501b4-ec78-4356-9676-bfff1da895e3",
-          "urn:632c3a3b-bdb9-4282-a9cb-4034f4e71912",
-          "urn:ae3ffd78-6ac2-4e21-92f6-374aafe67a05",
-          "urn:40829b28-2abd-4570-a610-fff0192594d1",
-          "urn:cf91d75d-dcb8-47e1-ad7b-9cd42f5e5bc7",
-          "urn:20ea2776-872a-45b1-a331-31916a8cedd1",
-          "urn:50d48bd5-727e-4b5c-85d0-84a98ef98fa2",
-          "urn:3b2b28ba-ed52-4d32-bd20-a000c0400aab",
-          "urn:49b0f0fb-21e2-4832-8ca3-db889a5448e9",
-          "urn:b8139844-99ad-49a6-8c8d-581cd3610481",
-          "urn:38c17bbc-be12-48da-8ba9-ce5a9511513a",
-          "urn:38c17bbc-be12-48da-8ba9-ce5a9511513a"
+          "urn:201bde68-fae3-411d-99f2-ab42384c8338",
+          "urn:201bde68-fae3-411d-99f2-ab42384c8338",
+          "urn:201bde68-fae3-411d-99f2-ab42384c8338",
+          "urn:d1910e3d-571c-4a0a-8b04-922051d2f700",
+          "urn:2a0f9189-7d52-468c-806f-baa49cb86324",
+          "urn:d1910e3d-571c-4a0a-8b04-922051d2f700",
+          "urn:b40ccc1c-b813-4219-a74b-a25fb1e89d9d",
+          "urn:c90e1aa5-b00c-497d-a2bf-b8dbc68d37ed",
+          "urn:05da50da-4c38-490d-939e-2529d5338e2b",
+          "urn:4675995f-f8e5-441b-ac89-59333de789b1",
+          "urn:f8d71294-bbc9-4741-a763-9d92fe5a8415",
+          "urn:5f034d1d-132c-491b-b140-614cefd7f5d9",
+          "urn:7b86e920-6741-434b-8143-92e7fcd3f58a",
+          "urn:9e64a06d-9dc5-4e38-803f-8758f650cd1c",
+          "urn:a7b6f5de-c2b2-49ed-b1f2-85cc15ba656d",
+          "urn:72dc641b-3362-4d3b-ad48-4de534cc16f2",
+          "urn:72dc641b-3362-4d3b-ad48-4de534cc16f2"
         ]
       },
       {
-        "@id": "urn:23190d4d-e3e5-40ac-914e-a1e98e5933c8",
+        "@id": "urn:b2f24b4e-a723-44a7-bfeb-7434a9229cee",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:20ea2776-872a-45b1-a331-31916a8cedd1",
-          "urn:20ea2776-872a-45b1-a331-31916a8cedd1",
-          "urn:20ea2776-872a-45b1-a331-31916a8cedd1"
+          "urn:4675995f-f8e5-441b-ac89-59333de789b1",
+          "urn:4675995f-f8e5-441b-ac89-59333de789b1",
+          "urn:4675995f-f8e5-441b-ac89-59333de789b1"
         ]
       },
       {
-        "@id": "urn:1ac09ee3-7059-4f0d-945c-2cb8e55b30e9",
+        "@id": "urn:1d6c2c35-9863-4bdf-b7fa-c197d57ea047",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:10021c12-ce10-4d57-857a-2ae8ef4cb9fc",
+        "AssociatedWith": "urn:41221b2c-83ee-493a-b41f-63e8da9f3cdf",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:42dfcf03-5b5e-43ba-ae86-d88910e34559"
+          "urn:391b6139-ccc6-4820-83d1-803d176f56c5"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:8f33c5d7-6ef2-4d67-bb97-4e9ba7523eb4",
+        "@id": "urn:68d316be-cf42-4d78-9f7d-d2c54c8c323a",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_tent_basis_function/tone_counting_onset_times.txt",
         "digest": {
@@ -191,7 +191,7 @@
         }
       },
       {
-        "@id": "urn:14892f7c-adf0-47e8-9fd4-163298f43062",
+        "@id": "urn:477c3f5e-630b-4bfb-a468-dfd83634e24e",
         "Label": "tone_counting_probe_onsets.txt",
         "AtLocation": "./afni_tent_basis_function/tone_counting_probe_onsets.txt",
         "digest": {
@@ -199,7 +199,7 @@
         }
       },
       {
-        "@id": "urn:6f0bc278-4854-410a-8ce5-2c52d30c5e7b",
+        "@id": "urn:5220bf84-809b-43c7-a990-4420937d440c",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "./afni_tent_basis_function/sub-01_T1w.nii.gz",
         "digest": {
@@ -207,34 +207,34 @@
         }
       },
       {
-        "@id": "urn:f3acd084-9b36-409e-a912-a64754a2c496",
+        "@id": "urn:186dff1f-a309-4fcd-b719-0c7054da025c",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:821222ba-cb2f-47a8-bc1b-6bb24d814509",
+        "GeneratedBy": "urn:5d7bff8e-3649-4279-b652-65208d3038d8",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:ecd695c7-b43b-46a3-a180-749b4a38ee78",
+        "@id": "urn:4eecb78e-3252-40ef-a8f1-5e2ca47dd3a2",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:821222ba-cb2f-47a8-bc1b-6bb24d814509"
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@@ -242,13 +242,13 @@
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@@ -256,7 +256,7 @@
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@@ -264,25 +264,25 @@
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@@ -290,16 +290,16 @@
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@@ -307,7 +307,7 @@
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@@ -315,16 +315,16 @@
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@@ -332,7 +332,7 @@
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@@ -340,7 +340,7 @@
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@@ -348,16 +348,16 @@
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@@ -365,16 +365,16 @@
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@@ -382,7 +382,7 @@
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@@ -390,7 +390,7 @@
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@@ -398,7 +398,7 @@
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@@ -406,7 +406,7 @@
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@@ -414,7 +414,7 @@
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@@ -422,7 +422,7 @@
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@@ -430,7 +430,7 @@
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@@ -438,97 +438,97 @@
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@@ -536,7 +536,7 @@
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@@ -544,7 +544,7 @@
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@@ -552,7 +552,7 @@
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@@ -560,7 +560,7 @@
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@@ -568,7 +568,7 @@
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@@ -576,7 +576,7 @@
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@@ -584,7 +584,7 @@
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-        "@id": "urn:2eb28fb2-64cb-4f97-9585-a2a087bce5bf",
+        "@id": "urn:f715da09-7169-4935-8a19-0e64acad6228",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:23190d4d-e3e5-40ac-914e-a1e98e5933c8",
+        "GeneratedBy": "urn:b2f24b4e-a723-44a7-bfeb-7434a9229cee",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:1de21354-cb92-4e3e-a1b6-c21a2419f96f",
+        "@id": "urn:841327f1-5e7e-4483-acb6-fe061e15ab16",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:23190d4d-e3e5-40ac-914e-a1e98e5933c8",
+        "GeneratedBy": "urn:b2f24b4e-a723-44a7-bfeb-7434a9229cee",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:42dfcf03-5b5e-43ba-ae86-d88910e34559",
+        "@id": "urn:391b6139-ccc6-4820-83d1-803d176f56c5",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -969,10 +969,10 @@
         }
       },
       {
-        "@id": "urn:3e76f4d2-3306-41b7-8185-10c2a3996597",
+        "@id": "urn:9010c105-4fa2-4b9e-b829-552d9df111bd",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:1ac09ee3-7059-4f0d-945c-2cb8e55b30e9",
+        "GeneratedBy": "urn:1d6c2c35-9863-4bdf-b7fa-c197d57ea047",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_other_template_proc.jsonld b/examples/from_parsers/afni/afni_other_template_proc.jsonld
index bdc263ccc..f0db44da9 100644
--- a/examples/from_parsers/afni/afni_other_template_proc.jsonld
+++ b/examples/from_parsers/afni/afni_other_template_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "@id": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:f6487662-966c-4737-93d3-db7ce991e7ec",
+        "@id": "urn:034865b2-36f6-45ff-9ca0-89dd56ddd22d",
         "Label": "Make directory",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:7e2bc2b5-b927-447d-a3ae-8767c2603c26",
+        "@id": "urn:6442d6c7-861e-47b6-a7ec-869397d3fd3c",
         "Label": "Make directory",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:3e2049c4-7134-443a-bcaa-32771d013ee9",
+        "@id": "urn:01916163-39ab-406b-a4ad-fe365cf6bf5e",
         "Label": "cp",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "cp ./afni_other_template/tone_counting_onset_times.txt ./afni_other_template/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:1e422005-3b1a-4f43-9113-dd49f1ddf5b5",
-          "urn:2dd4bdd9-81a3-4671-ae2b-3303e79bd597"
+          "urn:057be9c0-35ac-49f8-a62a-d3917a8736cf",
+          "urn:6d537e2c-415f-4500-beec-7ff9617cd3c9"
         ]
       },
       {
-        "@id": "urn:30833595-df15-473c-9fbc-b51b46f6220f",
+        "@id": "urn:f8ad3805-7098-4b47-bba8-e210230c5e80",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcopy ./afni_other_template/sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:05e2ae8c-a0d2-4c68-bdf1-06b76f859ccd"
+          "urn:b7aa1492-f271-4938-ba63-83b2832e399d"
         ]
       },
       {
-        "@id": "urn:035f1ae5-a898-46bd-a450-430331b8b987",
+        "@id": "urn:a5fc0d33-b76e-4555-a307-ff6b719128b6",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_other_template/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:8f05debd-39ba-4706-8450-7e506af5b91c"
+          "urn:67953245-9625-4958-9ed6-f255c3196cd3"
         ]
       },
       {
-        "@id": "urn:e84ad552-4fd6-4f7a-b61f-af8268dbc4b7",
+        "@id": "urn:40782800-0f18-44eb-927b-9a18f874c562",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:50610570-f005-4efe-b967-fb1fe217c163"
+          "urn:1f498cde-c4ee-44f0-9366-98075fbf4117"
         ]
       },
       {
-        "@id": "urn:52dc58df-35c5-4d53-999e-2377d2e2eddd",
+        "@id": "urn:e14ccb8f-542f-4043-aa5b-2ad720a90fa5",
         "Label": "cat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:fb9f4b8d-e79b-4082-952e-839608db3b81"
+          "urn:ac927f49-4167-4dc0-b0da-d215e9262d89"
         ]
       },
       {
-        "@id": "urn:b0d684ca-f4e5-4906-a573-afa2b10fc2e3",
+        "@id": "urn:f1e74580-01fc-4bcb-8267-dfeca3c1fcab",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:50610570-f005-4efe-b967-fb1fe217c163"
+          "urn:1f498cde-c4ee-44f0-9366-98075fbf4117"
         ]
       },
       {
-        "@id": "urn:b263d905-07d9-4561-8e6f-3642c4753b72",
+        "@id": "urn:9f95d75b-2960-4442-b622-cfa279765332",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:51621115-ddfd-4b47-a945-1f41a2d2d1ae",
-          "urn:cd4904d9-50f8-40f4-ba37-150beaa53fb0"
+          "urn:05d94c20-ed16-47dd-855c-7eeb5b6b8da2",
+          "urn:f18b385c-ae9d-432e-a000-11b8fcc937f0"
         ]
       },
       {
-        "@id": "urn:785ab00d-b2b2-4d41-9517-5340e9a6b666",
+        "@id": "urn:94eca642-e7a4-4516-bb04-d3ec7205f2f0",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "@auto_tlrc -base TT_icbm452+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:e12bd186-f854-46a0-89c9-d7035a31bd5d",
-          "urn:dc6c04c1-ad18-4892-92a4-c031e29dca9d"
+          "urn:34a6ccc1-c1a9-4abc-9c95-3c421aed66d5",
+          "urn:525db306-486b-4f71-9290-dbb1682ab1f7"
         ]
       },
       {
-        "@id": "urn:b9abc1ea-bd24-4d11-9265-b47515b60018",
+        "@id": "urn:055168ca-a31a-46a5-9856-c4d65f4ff571",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:9c7c6f27-48e0-4fea-9462-0562a157958e"
+          "urn:5ac2aa06-d1d0-4302-9070-1a4f8ee7298d"
         ]
       },
       {
-        "@id": "urn:6ec6582b-5a64-41b9-b74a-d118936b0284",
+        "@id": "urn:23b3a8fd-1d9d-4840-b592-ff7a5854e10b",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:514fce8a-8ed3-4f25-8595-068414f01b0c"
+          "urn:7fd9b3c1-a451-4a03-8201-3e8beeab3afe"
         ]
       },
       {
-        "@id": "urn:876c515d-0b2c-4896-a395-f5208dbee953",
+        "@id": "urn:af12b69b-fe39-4e11-90eb-ebe03f5f448a",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:514fce8a-8ed3-4f25-8595-068414f01b0c"
+          "urn:7fd9b3c1-a451-4a03-8201-3e8beeab3afe"
         ]
       },
       {
-        "@id": "urn:287cbf00-f101-4375-ad78-e61d0f8c648f",
+        "@id": "urn:e777f8b9-880c-4a71-ad01-43f3f0abbeee",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:9c7c6f27-48e0-4fea-9462-0562a157958e"
+          "urn:5ac2aa06-d1d0-4302-9070-1a4f8ee7298d"
         ]
       },
       {
-        "@id": "urn:77b26c36-1727-41bd-92d1-903d0fd511c9",
+        "@id": "urn:c73caae5-64c6-4d21-8599-9e670b9bfb9b",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:37121a7c-b567-4f85-a500-bb3562563a9d",
-          "urn:514fce8a-8ed3-4f25-8595-068414f01b0c",
-          "urn:5a20644f-8235-42e5-b56f-e86bb7753ecd"
+          "urn:7fd9b3c1-a451-4a03-8201-3e8beeab3afe",
+          "urn:9e25a10e-d3da-4de0-b8c9-87b55ec50cb5",
+          "urn:bc3e53a0-c4c7-497a-9f5f-a6a01ce571da"
         ]
       },
       {
-        "@id": "urn:281f3d24-626f-4c05-b06f-01ed8c009bdc",
+        "@id": "urn:46e4ccb6-9f24-41af-a5f0-3d0c94cad925",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:37121a7c-b567-4f85-a500-bb3562563a9d",
-          "urn:d604d4b1-3ba4-4569-a3e2-e89c6cb6b835",
-          "urn:5a20644f-8235-42e5-b56f-e86bb7753ecd"
+          "urn:9e25a10e-d3da-4de0-b8c9-87b55ec50cb5",
+          "urn:bc3e53a0-c4c7-497a-9f5f-a6a01ce571da",
+          "urn:f869b0e7-5c2d-4f08-9bc5-026509af7d14"
         ]
       },
       {
-        "@id": "urn:d15366f1-fcfc-4689-94f3-936e235b3bdd",
+        "@id": "urn:68954e54-5941-4ec9-ac55-7d2e944fbb74",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:8d91aa22-22f8-4ea2-9ca5-42d0f4643f4f"
+          "urn:565d6945-cf43-4637-91dd-959ef59fd94f"
         ]
       },
       {
-        "@id": "urn:8a207674-153d-4980-85d2-dbcc92f688d2",
+        "@id": "urn:beae7e86-fb11-4df3-84b4-4666debc7e5f",
         "Label": "cat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:affc4ea6-1cd3-4deb-bf21-c01b7d788de1"
+          "urn:a593e27f-7e1a-44ef-85cc-4712ba305740"
         ]
       },
       {
-        "@id": "urn:947fc159-4080-408c-90d8-9c082ab4f5db",
+        "@id": "urn:2b244cf4-5e67-41c2-bf50-4eab48c53424",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:16e3f814-261e-426c-ac40-a4112a65d10d"
+          "urn:848d10fa-989f-4a16-9db9-e9f346013291"
         ]
       },
       {
-        "@id": "urn:170a2642-1f39-449a-b52c-43a3f96332f4",
+        "@id": "urn:0aaa9b00-90b6-4f7c-bef2-5e46efd3abe5",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:8d4a17dd-0272-4c84-abd0-49fe8c41c0ee",
-          "urn:053445f1-731c-4b12-ad78-83c800e44f52"
+          "urn:dbc11716-e865-4e0f-9e6b-70c3603b6f2c",
+          "urn:f330816b-b82a-4d29-83cd-78e2d6e6a680"
         ]
       },
       {
-        "@id": "urn:e263f16e-cedc-4489-bc9a-a3b69f9a926e",
+        "@id": "urn:6552d457-a0a9-4e38-8b97-5b3f3c6e4d0e",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:37121a7c-b567-4f85-a500-bb3562563a9d"
+          "urn:bc3e53a0-c4c7-497a-9f5f-a6a01ce571da"
         ]
       },
       {
-        "@id": "urn:0b2b92bb-d5a0-481b-b286-f5524c5174c7",
+        "@id": "urn:87b39aea-7485-4ccb-be46-cf814c21fc7b",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:e64b9468-e646-4716-a449-e734edd20283"
+          "urn:555bcac3-727b-420f-be4c-d8e506e33ce6"
         ]
       },
       {
-        "@id": "urn:c7b8d196-180d-4429-99a9-be28c989cfc1",
+        "@id": "urn:f0ecf845-76ce-4699-8ae5-ba0bb2ad4118",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:1b9550df-d2e5-4b1a-b614-4a6e123b2c9b",
-          "urn:da476eb4-c8f5-4aba-b5cd-3b7836110dcc"
+          "urn:a2e9a27e-e4fc-454e-a015-e4591a0003df",
+          "urn:ac9e2bcd-cb54-40e8-a68c-9962174801f5"
         ]
       },
       {
-        "@id": "urn:18029782-11f3-474d-a4b0-03ab12abe0b6",
+        "@id": "urn:e3e660d5-d5a7-48fc-98fe-18d4e59a04e0",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:0b1a99ce-3115-4f96-b2c8-98f09202047a"
+          "urn:a68b66ec-2367-4d43-8664-e02dd673998a"
         ]
       },
       {
-        "@id": "urn:a20c4998-341d-444f-8893-454db53c472c",
+        "@id": "urn:c62bd1a0-c919-4b92-8fce-570a872cf405",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:eb31f484-923d-463e-b2d9-c7fca7e7817c",
+        "@id": "urn:14fea31e-6012-42ea-b435-728cb9bb44ae",
         "Label": "3dresample",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:37121a7c-b567-4f85-a500-bb3562563a9d",
-          "urn:68ebae99-927e-455f-b2a6-5123f2ef2fba"
+          "urn:8306f482-d9ff-4eb9-b0b1-67182a7af916",
+          "urn:bc3e53a0-c4c7-497a-9f5f-a6a01ce571da"
         ]
       },
       {
-        "@id": "urn:005f3bf8-1933-45c3-b283-155aa5cd92fe",
+        "@id": "urn:d15ed113-62ce-4ed3-8307-f7c9aa747f99",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:5b07097b-74e7-4377-be56-e02e611bc43f"
+          "urn:095384b1-8649-42be-85d8-93f6790e8498"
         ]
       },
       {
-        "@id": "urn:b6c7fc02-e21b-4843-ae6e-33ae0b7e7457",
+        "@id": "urn:614e1d98-68ea-4037-959c-218caac702b4",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:4274fe0d-59d1-4526-b361-8143401dfa7e",
-          "urn:db7eedc2-2f44-4a6c-9028-5188d14b7b88"
+          "urn:36bd51f7-6a7b-4972-9e3f-128f1e3bc200",
+          "urn:e4093739-43a7-4659-8500-2162b6e06ac1"
         ]
       },
       {
-        "@id": "urn:ec3a19d9-9a5a-4b83-a471-89e8fce3eadc",
+        "@id": "urn:bba20b2d-4d4a-4190-8d90-d76d8a736f06",
         "Label": "3ddot",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:4274fe0d-59d1-4526-b361-8143401dfa7e",
-          "urn:db7eedc2-2f44-4a6c-9028-5188d14b7b88"
+          "urn:36bd51f7-6a7b-4972-9e3f-128f1e3bc200",
+          "urn:e4093739-43a7-4659-8500-2162b6e06ac1"
         ]
       },
       {
-        "@id": "urn:8e023450-0935-49bf-8dd0-7bb4196fbdf4",
+        "@id": "urn:cd0c6bf0-a4e1-4661-91d7-3ac3a921f611",
         "Label": "3dresample",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_icbm452+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:559ab88d-a226-41c0-aee7-6b3c5cfbe790",
-          "urn:68ebae99-927e-455f-b2a6-5123f2ef2fba"
+          "urn:073168b5-b593-4406-9b08-d95f08b1cd1e",
+          "urn:8306f482-d9ff-4eb9-b0b1-67182a7af916"
         ]
       },
       {
-        "@id": "urn:b979651c-e069-41c3-9435-6a7efa49c0f1",
+        "@id": "urn:cd2192eb-05ca-4a36-b7f3-02f2de727f03",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:00125f77-6342-48bb-963c-4dae68613589"
+          "urn:01dc9cfe-e1e5-4460-b7cc-8bffb7c50a91"
         ]
       },
       {
-        "@id": "urn:0d886edf-85d6-4249-a71d-d809e5498e82",
+        "@id": "urn:a7f17246-55db-4911-bfc2-1c25c8cbd171",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:0b1a99ce-3115-4f96-b2c8-98f09202047a"
+          "urn:a68b66ec-2367-4d43-8664-e02dd673998a"
         ]
       },
       {
-        "@id": "urn:23b08248-8d69-4ffe-a8bf-406312ab23aa",
+        "@id": "urn:6fbdb553-8156-4158-aa41-c34fe4536a6f",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:0b1a99ce-3115-4f96-b2c8-98f09202047a",
-          "urn:9a2dd7cc-052f-4478-b416-fa7a4adb22f2",
-          "urn:053445f1-731c-4b12-ad78-83c800e44f52"
+          "urn:5f9b6c63-f114-4763-a153-e4ba8a4c510e",
+          "urn:a68b66ec-2367-4d43-8664-e02dd673998a",
+          "urn:f330816b-b82a-4d29-83cd-78e2d6e6a680"
         ]
       },
       {
-        "@id": "urn:5e9bf653-542a-4ed6-96a4-f8edeb95cda8",
+        "@id": "urn:fe55b2a7-0de1-499d-a868-a5dc04c73443",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:9e439a85-3103-4992-96af-be574019827e"
+          "urn:7b9e73d4-ce1b-4f85-90c1-720b737aecf6"
         ]
       },
       {
-        "@id": "urn:915e32b4-c652-48ce-8660-ecf7a007269e",
+        "@id": "urn:957b0079-9662-4836-b6d5-563dd2d7b239",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:9e439a85-3103-4992-96af-be574019827e"
+          "urn:7b9e73d4-ce1b-4f85-90c1-720b737aecf6"
         ]
       },
       {
-        "@id": "urn:57bd0bcd-f9d4-4f7e-98b1-b2439a0d7c98",
+        "@id": "urn:1c858060-3800-44dc-bcab-8a540f7d215c",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:9e439a85-3103-4992-96af-be574019827e"
+          "urn:7b9e73d4-ce1b-4f85-90c1-720b737aecf6"
         ]
       },
       {
-        "@id": "urn:7a473662-ee47-4397-a8ae-b2bf8e1d4409",
+        "@id": "urn:44ed666d-a01c-4385-9f30-438c6db3b2d7",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:189beb08-e9a2-4516-9240-a715584e0031"
+          "urn:21b70068-0e68-4cfa-afd4-f6103efb8b83"
         ]
       },
       {
-        "@id": "urn:9ba21a89-ed35-4419-a682-3263f7dac0fb",
+        "@id": "urn:15bea182-294d-4fe1-9350-ae103cb0dddb",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:bfc775c7-b23c-4f34-a471-608d47d69d7e"
+          "urn:a40b63b6-38da-40a5-96fa-d18592e31414"
         ]
       },
       {
-        "@id": "urn:ff2a2443-83b2-4529-a30f-d2d858c75ea9",
+        "@id": "urn:7328a639-5800-430e-9d20-d0c7d77f0daa",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:189beb08-e9a2-4516-9240-a715584e0031"
+          "urn:21b70068-0e68-4cfa-afd4-f6103efb8b83"
         ]
       },
       {
-        "@id": "urn:e750f6bc-d97a-4a51-ac11-ae1720f99d12",
+        "@id": "urn:30867f07-efcd-414b-bdbf-1878b3578d18",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:a1ef1654-edd0-48b0-ad15-8c447e74f8da"
+          "urn:448c001b-fbf0-4915-b959-b7b87a921c7c"
         ]
       },
       {
-        "@id": "urn:2bd63b48-4475-4f80-9b48-bceab9a6454c",
+        "@id": "urn:fe6b1502-266f-4d26-84fb-040ce6fc2a3d",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:cd671cbd-c42d-4719-81c8-0a9e3e044d7b"
+          "urn:65628bdc-1cf9-43c5-99eb-74f20c8e7278"
         ]
       },
       {
-        "@id": "urn:4a8f29c1-4ba1-4ea3-a128-eccc5bc20519",
+        "@id": "urn:e9ae82db-e47b-4e45-954e-a7e7d27708c1",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:86bc195e-ddf4-49cd-a722-c44af7f51739",
-          "urn:3dbdc0d0-6ed7-4673-adb7-bf7ee0e10c5f",
-          "urn:68ebae99-927e-455f-b2a6-5123f2ef2fba"
+          "urn:1756ff39-a0cf-41b2-a7c8-d940ea52eaab",
+          "urn:240d1a60-392a-46d3-b3ac-0dde12607797",
+          "urn:8306f482-d9ff-4eb9-b0b1-67182a7af916"
         ]
       },
       {
-        "@id": "urn:5332bacd-9884-4a4f-bf86-75796fd47c81",
+        "@id": "urn:496fc0fe-61c9-4f9f-9f38-fda4fc784cd0",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:fd337a81-c20c-4ebe-85a4-29f828dcba40"
+          "urn:b6285a9f-3c3b-4835-8421-b287dd391f8a"
         ]
       },
       {
-        "@id": "urn:85df3309-7274-417c-818b-db0e65a74b46",
+        "@id": "urn:57e2f46d-dd77-4e80-91e3-0ca1293cc9eb",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:bd3cda7f-ebb1-4668-8946-9c8ecc7be163",
+        "@id": "urn:26845403-e157-4c37-9a6e-c1eeaeae3b18",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:e5e18b59-a90b-4ac9-9254-d5a18b92d307"
+          "urn:7d63f25f-d6b3-4cdc-8adb-96dd6839ae99"
         ]
       },
       {
-        "@id": "urn:a842c4e3-7553-4db1-8f80-c8490a6d2342",
+        "@id": "urn:adf3450f-9bdb-4b4c-8f53-8d0a2f0dfd37",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:301eb051-62cc-44d8-a38f-abdeb3a57511",
-          "urn:11aca076-ca97-4e8f-8c73-205ea9d1bd0a"
+          "urn:0a236937-57ed-4fa9-8a42-42c9f451dcab",
+          "urn:98687417-079d-459f-ab4a-89047b25a9ea"
         ]
       },
       {
-        "@id": "urn:2b740c02-dcc6-4ca6-83b6-823447dd4dbb",
+        "@id": "urn:a8fe7655-9fee-499e-892a-e6bdb67b388b",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:5b04f058-84b0-4900-86d8-ba5bda1ed793"
+          "urn:e050691d-f536-4747-9ebe-064e710a975e"
         ]
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       {
-        "@id": "urn:0b89b54b-b2af-4483-a3e0-94cf7ae5c951",
+        "@id": "urn:1f300416-cb44-4146-9f15-9c00172b67c2",
         "Label": "1dcat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:d235363a-c2f2-4f62-9687-c7df80999bb0"
+          "urn:a1376e07-2ae9-42a9-8615-463d27aac63d"
         ]
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       {
-        "@id": "urn:db08eb96-49ca-4fa9-bfb8-b3dc3e4c4f79",
+        "@id": "urn:ee1dc8c2-1f47-49cd-be91-a9401a7b67e3",
         "Label": "1dcat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:0fd3b96b-ed78-45b9-aaf3-91d34f33e91b"
+          "urn:b65d59ee-f13f-453c-8a53-7f81bbb2b531"
         ]
       },
       {
-        "@id": "urn:738325f4-ebfd-4fbd-b9ab-981a80357af0",
+        "@id": "urn:93e140f6-011a-4a88-a0e2-45d4dcabf556",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:72d6dd2f-3315-4dc9-90e9-175008e98179"
+          "urn:106c67ad-3cda-4b75-9642-0d563c02bba6"
         ]
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       {
-        "@id": "urn:71794b12-4a48-4cf9-ad76-367ef664ff9a",
+        "@id": "urn:2b724579-87a4-402f-aeb6-403c1971174d",
         "Label": "1dcat",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:72d6dd2f-3315-4dc9-90e9-175008e98179"
+          "urn:106c67ad-3cda-4b75-9642-0d563c02bba6"
         ]
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-        "@id": "urn:b377a62c-0136-42c9-bc3b-33bf283478b4",
+        "@id": "urn:0c95da24-bf76-40de-be8e-720ca4a8bc09",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:68ebae99-927e-455f-b2a6-5123f2ef2fba"
+          "urn:8306f482-d9ff-4eb9-b0b1-67182a7af916"
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-        "@id": "urn:d88de3e9-87e2-44de-a584-a68154f87149",
+        "@id": "urn:3990b2ab-c24a-4737-a70a-2d9e95fae845",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:68ebae99-927e-455f-b2a6-5123f2ef2fba"
+          "urn:8306f482-d9ff-4eb9-b0b1-67182a7af916"
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-        "@id": "urn:d5e7cf56-803f-4775-a4d7-27ab43902009",
+        "@id": "urn:e65f2878-6f13-488c-ac81-1600790903d6",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:68ebae99-927e-455f-b2a6-5123f2ef2fba"
+          "urn:8306f482-d9ff-4eb9-b0b1-67182a7af916"
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-        "@id": "urn:2dfc8419-0022-498a-89e4-acf510988d42",
+        "@id": "urn:9c2c6c31-e6f6-4773-a202-95c36cda8dc2",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:b4dbacf5-4b0e-469b-90b1-49e7d3a155cd"
+          "urn:7bc3df53-d61f-4ead-96d2-ec4e5c114672"
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-        "@id": "urn:2603df19-39bf-4946-8d17-6e5611b01406",
+        "@id": "urn:59c6504b-32b9-4a78-88ba-e3e3e4518c34",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:e38362d8-585f-4e4b-8c04-0c55f32d6456",
+        "AssociatedWith": "urn:eeb49e8b-7789-4684-b1c9-777ee690492a",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
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@@ -586,22 +586,22 @@
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     "Entities": [
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-        "@id": "urn:5a83e6ba-4f1c-459f-8b9f-60f61e9444e5",
+        "@id": "urn:f68ab65b-7eba-43ac-9558-ac93d8a9627f",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:f6487662-966c-4737-93d3-db7ce991e7ec",
+        "GeneratedBy": "urn:034865b2-36f6-45ff-9ca0-89dd56ddd22d",
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-        "@id": "urn:75ea91ca-4795-435d-8ac0-1e19fd2ff4c0",
+        "@id": "urn:3c8f1e80-b4dc-4d12-b22c-ac616848f9ae",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:7e2bc2b5-b927-447d-a3ae-8767c2603c26"
+        "GeneratedBy": "urn:6442d6c7-861e-47b6-a7ec-869397d3fd3c"
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+        "@id": "urn:057be9c0-35ac-49f8-a62a-d3917a8736cf",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_other_template/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
         }
       },
       {
-        "@id": "urn:2dd4bdd9-81a3-4671-ae2b-3303e79bd597",
+        "@id": "urn:6d537e2c-415f-4500-beec-7ff9617cd3c9",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_other_template/tone_counting_probe_duration.txt",
         "digest": {
@@ -617,13 +617,13 @@
         }
       },
       {
-        "@id": "urn:9436c7f5-ce44-4311-8385-1d54351a4e9f",
+        "@id": "urn:0f4ce3cb-edbe-49d3-954c-6b5cc6ffdab8",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:3e2049c4-7134-443a-bcaa-32771d013ee9"
+        "GeneratedBy": "urn:01916163-39ab-406b-a4ad-fe365cf6bf5e"
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-        "@id": "urn:05e2ae8c-a0d2-4c68-bdf1-06b76f859ccd",
+        "@id": "urn:b7aa1492-f271-4938-ba63-83b2832e399d",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "./afni_other_template/sub-01_T1w.nii.gz",
         "digest": {
@@ -631,13 +631,13 @@
         }
       },
       {
-        "@id": "urn:ce6d0fcd-9703-44df-9e5e-d126eaee7f4c",
+        "@id": "urn:7cbb179d-b703-4f73-8e1f-296962f7bdf8",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:30833595-df15-473c-9fbc-b51b46f6220f"
+        "GeneratedBy": "urn:f8ad3805-7098-4b47-bba8-e210230c5e80"
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-        "@id": "urn:8f05debd-39ba-4706-8450-7e506af5b91c",
+        "@id": "urn:67953245-9625-4958-9ed6-f255c3196cd3",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "./afni_other_template/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -645,13 +645,13 @@
         }
       },
       {
-        "@id": "urn:1f9cf81a-a168-4237-ba3c-30f95e1264eb",
+        "@id": "urn:1f493787-989c-4c06-97df-d5dde83c5dcf",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:035f1ae5-a898-46bd-a450-430331b8b987"
+        "GeneratedBy": "urn:a5fc0d33-b76e-4555-a307-ff6b719128b6"
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       {
-        "@id": "urn:50610570-f005-4efe-b967-fb1fe217c163",
+        "@id": "urn:1f498cde-c4ee-44f0-9366-98075fbf4117",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -659,16 +659,16 @@
         }
       },
       {
-        "@id": "urn:daeb538f-0c65-48b2-ab33-e130b3c24a79",
+        "@id": "urn:90a887ab-a8a3-45b6-87c3-d33000ccc882",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:e84ad552-4fd6-4f7a-b61f-af8268dbc4b7",
+        "GeneratedBy": "urn:40782800-0f18-44eb-927b-9a18f874c562",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
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       },
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-        "@id": "urn:fb9f4b8d-e79b-4082-952e-839608db3b81",
+        "@id": "urn:ac927f49-4167-4dc0-b0da-d215e9262d89",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -676,25 +676,25 @@
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       },
       {
-        "@id": "urn:b8e10bbb-9865-4396-87b8-69935a2f0a7a",
+        "@id": "urn:82533282-c050-4033-8227-7a8e5d1dcc98",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:52dc58df-35c5-4d53-999e-2377d2e2eddd",
+        "GeneratedBy": "urn:e14ccb8f-542f-4043-aa5b-2ad720a90fa5",
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-        "@id": "urn:0e383a9f-e4be-447d-baa2-be66cac8bff3",
+        "@id": "urn:e77609bf-fd45-4ea1-ad95-08171ed97abb",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:b0d684ca-f4e5-4906-a573-afa2b10fc2e3",
+        "GeneratedBy": "urn:f1e74580-01fc-4bcb-8267-dfeca3c1fcab",
         "digest": {
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-        "@id": "urn:51621115-ddfd-4b47-a945-1f41a2d2d1ae",
+        "@id": "urn:05d94c20-ed16-47dd-855c-7eeb5b6b8da2",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -702,7 +702,7 @@
         }
       },
       {
-        "@id": "urn:cd4904d9-50f8-40f4-ba37-150beaa53fb0",
+        "@id": "urn:f18b385c-ae9d-432e-a000-11b8fcc937f0",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -710,16 +710,16 @@
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       },
       {
-        "@id": "urn:522057cf-87c1-4b9f-bbd3-24f853426872",
+        "@id": "urn:dcf9ddaa-39ea-47a9-be3b-8b2af995f141",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:b263d905-07d9-4561-8e6f-3642c4753b72",
+        "GeneratedBy": "urn:9f95d75b-2960-4442-b622-cfa279765332",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
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       {
-        "@id": "urn:e12bd186-f854-46a0-89c9-d7035a31bd5d",
+        "@id": "urn:525db306-486b-4f71-9290-dbb1682ab1f7",
         "Label": "TT_icbm452",
         "AtLocation": "TT_icbm452+tlrc",
         "digest": {
@@ -727,7 +727,7 @@
         }
       },
       {
-        "@id": "urn:dc6c04c1-ad18-4892-92a4-c031e29dca9d",
+        "@id": "urn:34a6ccc1-c1a9-4abc-9c95-3c421aed66d5",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -735,7 +735,7 @@
         }
       },
       {
-        "@id": "urn:9c7c6f27-48e0-4fea-9462-0562a157958e",
+        "@id": "urn:5ac2aa06-d1d0-4302-9070-1a4f8ee7298d",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -743,16 +743,16 @@
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       },
       {
-        "@id": "urn:e64b9468-e646-4716-a449-e734edd20283",
+        "@id": "urn:555bcac3-727b-420f-be4c-d8e506e33ce6",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:b9abc1ea-bd24-4d11-9265-b47515b60018",
+        "GeneratedBy": "urn:055168ca-a31a-46a5-9856-c4d65f4ff571",
         "digest": {
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+        "@id": "urn:7fd9b3c1-a451-4a03-8201-3e8beeab3afe",
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         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -760,34 +760,34 @@
         }
       },
       {
-        "@id": "urn:cd3e9e9a-6f09-400c-9eef-126515d808a8",
+        "@id": "urn:a4dbd220-cd2c-47f5-af17-d530c580025b",
         "Label": "mat.r$run.vr.aff12.1D",
         "AtLocation": "mat.r$run.vr.aff12.1D",
-        "GeneratedBy": "urn:6ec6582b-5a64-41b9-b74a-d118936b0284",
+        "GeneratedBy": "urn:23b3a8fd-1d9d-4840-b592-ff7a5854e10b",
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+        "@id": "urn:bf94ded8-b9a7-437d-9389-d428f2666053",
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         "AtLocation": "rm.epi.all1",
-        "GeneratedBy": "urn:876c515d-0b2c-4896-a395-f5208dbee953",
+        "GeneratedBy": "urn:af12b69b-fe39-4e11-90eb-ebe03f5f448a",
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+        "@id": "urn:9e25a10e-d3da-4de0-b8c9-87b55ec50cb5",
         "Label": "mat.r$run.warp.aff12.1D",
         "AtLocation": "mat.r$run.warp.aff12.1D",
-        "GeneratedBy": "urn:287cbf00-f101-4375-ad78-e61d0f8c648f",
+        "GeneratedBy": "urn:e777f8b9-880c-4a71-ad01-43f3f0abbeee",
         "digest": {
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+        "@id": "urn:bc3e53a0-c4c7-497a-9f5f-a6a01ce571da",
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         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -795,16 +795,16 @@
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       },
       {
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+        "@id": "urn:0557adb8-317b-43b3-9a7c-cc92bc076ae4",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run",
-        "GeneratedBy": "urn:77b26c36-1727-41bd-92d1-903d0fd511c9",
+        "GeneratedBy": "urn:c73caae5-64c6-4d21-8599-9e670b9bfb9b",
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+        "@id": "urn:f869b0e7-5c2d-4f08-9bc5-026509af7d14",
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         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -812,16 +812,16 @@
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+        "@id": "urn:a2a332d5-28ed-4942-8b86-a35a27e8bddb",
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-        "GeneratedBy": "urn:5332bacd-9884-4a4f-bf86-75796fd47c81",
+        "GeneratedBy": "urn:496fc0fe-61c9-4f9f-9f38-fda4fc784cd0",
         "digest": {
           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
         }
       },
       {
-        "@id": "urn:11aca076-ca97-4e8f-8c73-205ea9d1bd0a",
+        "@id": "urn:98687417-079d-459f-ab4a-89047b25a9ea",
         "Label": "gmean.errts.unit.1D",
         "AtLocation": "gmean.errts.unit.1D",
-        "GeneratedBy": "urn:85df3309-7274-417c-818b-db0e65a74b46",
+        "GeneratedBy": "urn:57e2f46d-dd77-4e80-91e3-0ca1293cc9eb",
         "digest": {
           "sha256": "a35a66cce2e2d487762823c197ca1edc450a9887f46f125826b69c5021662f95"
         }
       },
       {
-        "@id": "urn:e5e18b59-a90b-4ac9-9254-d5a18b92d307",
+        "@id": "urn:7d63f25f-d6b3-4cdc-8adb-96dd6839ae99",
         "Label": "out.gcor.1D",
         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
       },
       {
-        "@id": "urn:7ae1bda0-f7e4-4f14-a7f4-a922b1efd5eb",
+        "@id": "urn:b2fca499-d8d3-420e-8e29-639297190429",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:bd3cda7f-ebb1-4668-8946-9c8ecc7be163",
+        "GeneratedBy": "urn:26845403-e157-4c37-9a6e-c1eeaeae3b18",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
         }
       },
       {
-        "@id": "urn:301eb051-62cc-44d8-a38f-abdeb3a57511",
+        "@id": "urn:0a236937-57ed-4fa9-8a42-42c9f451dcab",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit+tlrc",
         "digest": {
@@ -1221,16 +1221,16 @@
         }
       },
       {
-        "@id": "urn:83d9775b-d095-4fa1-9c97-3eb1ccbcc82c",
+        "@id": "urn:7fc2e81a-11c5-4b76-920d-9f1edce0cf30",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:a842c4e3-7553-4db1-8f80-c8490a6d2342",
+        "GeneratedBy": "urn:adf3450f-9bdb-4b4c-8f53-8d0a2f0dfd37",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:5b04f058-84b0-4900-86d8-ba5bda1ed793",
+        "@id": "urn:e050691d-f536-4747-9ebe-064e710a975e",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1238,16 +1238,16 @@
         }
       },
       {
-        "@id": "urn:9dcd837c-b805-482e-ada6-bc351c6279b5",
+        "@id": "urn:d12ea473-b377-4973-9a8e-a4370097b02e",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:2b740c02-dcc6-4ca6-83b6-823447dd4dbb",
+        "GeneratedBy": "urn:a8fe7655-9fee-499e-892a-e6bdb67b388b",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:d235363a-c2f2-4f62-9687-c7df80999bb0",
+        "@id": "urn:a1376e07-2ae9-42a9-8615-463d27aac63d",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[3]'",
         "digest": {
@@ -1255,16 +1255,16 @@
         }
       },
       {
-        "@id": "urn:693a8ebf-4876-42b8-b3e6-39bc58fb9175",
+        "@id": "urn:f5e2dc55-f182-4797-a887-a3ef2bcdffbb",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:0b89b54b-b2af-4483-a3e0-94cf7ae5c951",
+        "GeneratedBy": "urn:1f300416-cb44-4146-9f15-9c00172b67c2",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
         }
       },
       {
-        "@id": "urn:0fd3b96b-ed78-45b9-aaf3-91d34f33e91b",
+        "@id": "urn:b65d59ee-f13f-453c-8a53-7f81bbb2b531",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
         "digest": {
@@ -1272,16 +1272,16 @@
         }
       },
       {
-        "@id": "urn:39403e4d-45b5-4582-9d37-258d3e64847d",
+        "@id": "urn:35b33c51-06cd-4fc3-9a42-dc5335988375",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:db08eb96-49ca-4fa9-bfb8-b3dc3e4c4f79",
+        "GeneratedBy": "urn:ee1dc8c2-1f47-49cd-be91-a9401a7b67e3",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:72d6dd2f-3315-4dc9-90e9-175008e98179",
+        "@id": "urn:106c67ad-3cda-4b75-9642-0d563c02bba6",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:929a3f98-4314-480f-b888-01bdcf215560",
+        "@id": "urn:ae4b287d-dd72-480d-8334-3c0539a4d541",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:738325f4-ebfd-4fbd-b9ab-981a80357af0",
+        "GeneratedBy": "urn:93e140f6-011a-4a88-a0e2-45d4dcabf556",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:f2e84dd6-35d9-45be-bd69-95e73d210f05",
+        "@id": "urn:ce5318f7-cbe7-499e-bbb5-4ad119b79e07",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:71794b12-4a48-4cf9-ad76-367ef664ff9a",
+        "GeneratedBy": "urn:2b724579-87a4-402f-aeb6-403c1971174d",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:a31aaad2-d520-4981-96e1-11371b1fc426",
+        "@id": "urn:b69ed67d-30d0-4ac4-b43a-90f19d8aeb04",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:b377a62c-0136-42c9-bc3b-33bf283478b4",
+        "GeneratedBy": "urn:0c95da24-bf76-40de-be8e-720ca4a8bc09",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:4fd31fdf-5476-4077-ba9e-36bbeef52970",
+        "@id": "urn:c4f4cc11-80af-41f1-af25-079c326a068c",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:d88de3e9-87e2-44de-a584-a68154f87149",
+        "GeneratedBy": "urn:3990b2ab-c24a-4737-a70a-2d9e95fae845",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:bff29ae7-06a5-47af-89d8-c7b5a76718ce",
+        "@id": "urn:2abffd1a-63a7-49a5-a031-c8a4bcbc73e0",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:d5e7cf56-803f-4775-a4d7-27ab43902009",
+        "GeneratedBy": "urn:e65f2878-6f13-488c-ac81-1600790903d6",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:b4dbacf5-4b0e-469b-90b1-49e7d3a155cd",
+        "@id": "urn:7bc3df53-d61f-4ead-96d2-ec4e5c114672",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:2a5c5707-3ce7-4c23-8caf-b98dff0bfacf",
+        "@id": "urn:635786d0-a31c-4c2c-8cff-86fb4e69561f",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:2603df19-39bf-4946-8d17-6e5611b01406",
+        "GeneratedBy": "urn:59c6504b-32b9-4a78-88ba-e3e3e4518c34",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_other_template_proc_bloc.jsonld b/examples/from_parsers/afni/afni_other_template_proc_bloc.jsonld
index f9878e0f5..a6be2f187 100644
--- a/examples/from_parsers/afni/afni_other_template_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_other_template_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "@id": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:d81a5c5b-8b03-48f8-92ae-3e9895636e1e",
+        "@id": "urn:c75f3793-ca85-4574-8a96-672272ecca70",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_other_template/tone_counting_onset_times.txt ./afni_other_template/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy ./afni_other_template/sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:93adf029-3670-4112-a2a2-66bb7b20a01a",
-          "urn:bc1d54d7-90b4-444e-8ad4-93948efd48fd",
-          "urn:fe3e4131-9b71-4cde-ae30-0c848b08a6d6"
+          "urn:7db1d5a7-bf84-4146-830b-ce661f6fdee9",
+          "urn:b51b4e36-1b3d-46c2-94e0-75cc74a1bda8",
+          "urn:2b56fc0d-dbd7-46b0-a6b9-e669e98c5221"
         ]
       },
       {
-        "@id": "urn:38551fef-e588-44a6-b934-93cb671a56f6",
+        "@id": "urn:b0a3cb2e-f8c9-4140-bb6e-375dbe8a71f3",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat ./afni_other_template/sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:b5ef5827-8b9c-420a-ba5d-ff074a4816e4"
+          "urn:65d6a155-cb7f-4ea1-94c5-bfc22a313c9e"
         ]
       },
       {
-        "@id": "urn:1a83e7f6-a856-4c18-85fd-ad5fae8e1954",
+        "@id": "urn:ebca06a5-6084-4d81-90c4-3a4f6991a90d",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:b3d8eda4-b9f9-403e-a4c2-21b5fb08c82e",
-          "urn:bcca5728-ee7a-4910-b04e-4afe1f0100d4"
+          "urn:4f73c006-9fd9-4d4f-aa02-9fa910e1b0c1",
+          "urn:31720454-a32b-42e8-a625-b19ca4e33338"
         ]
       },
       {
-        "@id": "urn:c3ce6ca2-204a-4e32-bd85-d7fe6eaf08a9",
+        "@id": "urn:14e6bb01-26e9-4060-98c5-b0a23501fba5",
         "Label": "tshift",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:b3d8eda4-b9f9-403e-a4c2-21b5fb08c82e"
+          "urn:4f73c006-9fd9-4d4f-aa02-9fa910e1b0c1"
         ]
       },
       {
-        "@id": "urn:077d73ee-2b99-43bb-8424-92d76d6ace15",
+        "@id": "urn:57c85ca9-05dd-4f03-b0ea-a6f28b13b1d9",
         "Label": "align",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:df8b62e7-fee0-43de-bb45-e25ae1a262f2",
-          "urn:e085e4ed-61ad-41bb-8450-cffef55b7cc8"
+          "urn:724dea6a-6896-4486-b16c-a7e098c1866e",
+          "urn:f9f72209-8280-4c0d-9ad5-3aa395011ee5"
         ]
       },
       {
-        "@id": "urn:afe8afc2-9672-4930-8691-fb8cea8239b2",
+        "@id": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
         "Label": "tlrc",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "@auto_tlrc -base TT_icbm452+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:b000ce49-ee34-4b4a-a104-841943e9bc11",
-          "urn:c49d5a06-0a28-4dff-8d3f-b322c4f36291",
-          "urn:fac26c4d-38f9-49b0-9faf-062fe892a8ff"
+          "urn:91d9b302-d270-42f8-911d-e89173493b54",
+          "urn:f5874f15-2dae-4e97-a34f-7eda960d9655",
+          "urn:6a66a71e-7be2-4194-a6da-82730ee2ada8"
         ]
       },
       {
-        "@id": "urn:a22a0a26-9679-4208-a173-4e8e87fa031c",
+        "@id": "urn:5d0a7512-806e-4183-a0d2-a32c710120e5",
         "Label": "volreg",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:fe99ab29-ca34-4fb3-a31c-865b7fde6579",
-          "urn:fe99ab29-ca34-4fb3-a31c-865b7fde6579",
-          "urn:fac26c4d-38f9-49b0-9faf-062fe892a8ff",
-          "urn:0df558d3-86a4-4596-82b9-2026fa148678",
-          "urn:fe99ab29-ca34-4fb3-a31c-865b7fde6579",
-          "urn:0df558d3-86a4-4596-82b9-2026fa148678",
-          "urn:a7de91f4-6659-4288-9fa1-daeb0fd5f01b",
-          "urn:83b8a0a0-af45-4d8f-9a2e-35c24bcb3c0c",
-          "urn:a0e4adbb-6344-4a60-991e-336d5f663b71",
-          "urn:2d9ff369-4529-4847-81b1-9444562e5d64",
-          "urn:7e90b8aa-1787-46fb-88cf-ae5ddc1b0750",
-          "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb",
-          "urn:0df558d3-86a4-4596-82b9-2026fa148678",
-          "urn:308e722d-3011-4493-b217-f569373f2c39"
+          "urn:a0b91069-29ca-4697-a098-3840eae8d9a3",
+          "urn:a0b91069-29ca-4697-a098-3840eae8d9a3",
+          "urn:6a66a71e-7be2-4194-a6da-82730ee2ada8",
+          "urn:55f46847-0304-40b3-aab6-776cde3785ce",
+          "urn:a0b91069-29ca-4697-a098-3840eae8d9a3",
+          "urn:55f46847-0304-40b3-aab6-776cde3785ce",
+          "urn:63b76a0e-b4f2-4599-95b6-fb194a899ec3",
+          "urn:7ba4801a-9b3b-4646-8ce8-77214178f7c3",
+          "urn:4219a51e-94f7-49c2-be23-054e53c83d37",
+          "urn:b29799d5-56c0-4a40-9dc9-735513a0d696",
+          "urn:18637792-91ef-48a3-89ae-cacce9385f69",
+          "urn:537f0fb7-be91-447d-b3dd-c7e95ce9c200",
+          "urn:55f46847-0304-40b3-aab6-776cde3785ce",
+          "urn:418ec691-7af9-488a-84a3-f4c7d51256e1"
         ]
       },
       {
-        "@id": "urn:f8bf025a-bf6e-49f7-a38c-ca65385dd71d",
+        "@id": "urn:1180ec80-cd33-484a-a50e-f69f9498ef73",
         "Label": "blur",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:1b781f3e-d5fd-400c-89de-ff3f0fa207a7",
-          "urn:57568e78-c209-4703-8379-c145283e032f"
+          "urn:1a0509f4-dbd8-4122-af97-3a1c14419a3f",
+          "urn:a3b4bb16-0de9-4bc9-ae04-578af93edca6"
         ]
       },
       {
-        "@id": "urn:c448dd97-8997-44c6-b2f6-886a6a116cbf",
+        "@id": "urn:7ab4fccc-8b12-41ff-9bf3-24a5c9e6adcc",
         "Label": "mask",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_icbm452+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:c6a468b6-cc4a-43b3-ac27-31554da9d2fc",
-          "urn:0df558d3-86a4-4596-82b9-2026fa148678",
-          "urn:ac767057-e6a1-4207-8818-bbb01d04b597",
-          "urn:4c92e3a4-6cf2-4fa0-9fa6-91e0dcda8b8d",
-          "urn:91e6e90d-7fd9-4fe3-9c65-1029ada5d21f",
-          "urn:fc13645c-7312-4383-ae53-acf45451ee3b",
-          "urn:91e6e90d-7fd9-4fe3-9c65-1029ada5d21f",
-          "urn:fc13645c-7312-4383-ae53-acf45451ee3b",
-          "urn:25b260b1-6825-40d3-b423-c05cca0747fb",
-          "urn:ac767057-e6a1-4207-8818-bbb01d04b597",
-          "urn:f19ccc20-154f-4cee-9abd-ec0a43848b3d"
+          "urn:8456218e-78ef-4c11-8d99-f270f00b2481",
+          "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39",
+          "urn:55f46847-0304-40b3-aab6-776cde3785ce",
+          "urn:f2c5b2f0-2b16-4aed-b7b1-c4c79b48829c",
+          "urn:550f32b9-212a-4fd4-a609-6adc63225027",
+          "urn:85da9c16-cb15-4fa2-a44b-202952ce4f61",
+          "urn:550f32b9-212a-4fd4-a609-6adc63225027",
+          "urn:85da9c16-cb15-4fa2-a44b-202952ce4f61",
+          "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39",
+          "urn:554d2707-50ff-497f-8fcc-30ad2cd2c556",
+          "urn:d9547c77-b409-4eec-b13e-f0f60e8c6f8f"
         ]
       },
       {
-        "@id": "urn:c83de79e-f16d-4a1a-8038-2d36fe3e1a8a",
+        "@id": "urn:70e729c9-db06-459c-955c-37465b487ff4",
         "Label": "scale",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:c6a468b6-cc4a-43b3-ac27-31554da9d2fc",
-          "urn:c6a468b6-cc4a-43b3-ac27-31554da9d2fc",
-          "urn:b7bd3c57-1d8d-4cd8-9a1c-67c8b0962dfc",
-          "urn:9a05342f-5bd5-43c7-ad4c-c0335f9a38fb"
+          "urn:8456218e-78ef-4c11-8d99-f270f00b2481",
+          "urn:49f37db9-8e1e-40df-8197-d029b351ec20",
+          "urn:537f0fb7-be91-447d-b3dd-c7e95ce9c200",
+          "urn:8456218e-78ef-4c11-8d99-f270f00b2481"
         ]
       },
       {
-        "@id": "urn:3c91a86f-673d-40f3-b844-24466965e0c9",
+        "@id": "urn:a31ea3d9-4c28-48eb-8885-2f4d2fb8a62a",
         "Label": "regress",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:19ab30f4-d471-4bcc-9a78-eec044705c90",
-          "urn:19ab30f4-d471-4bcc-9a78-eec044705c90",
-          "urn:19ab30f4-d471-4bcc-9a78-eec044705c90",
-          "urn:b07e9f43-bab7-4505-bb00-8d93a7da789f",
-          "urn:b07e9f43-bab7-4505-bb00-8d93a7da789f",
-          "urn:c0271943-f354-4ebb-96a0-461ea962cdbb",
-          "urn:90825931-1e37-4c79-845e-6ce2e98b2146",
-          "urn:1ffb7dad-6d9a-435f-b673-8b407b6969d3",
-          "urn:1e2c7578-af0e-4bca-884b-250816eba9ef",
-          "urn:ac767057-e6a1-4207-8818-bbb01d04b597",
-          "urn:c51d7280-0110-4542-9ecf-0e5f3bc7e16c",
-          "urn:f1c4e4e5-208e-46e6-bd37-01b99373d498",
-          "urn:edba3b28-6853-47ac-93a6-362a4e4cf4a4",
-          "urn:2a39471a-4d01-4594-9f52-1bc9808a9542",
-          "urn:7d2dcce3-c3b7-477d-a23e-00d6160827be",
-          "urn:b137e11e-2316-4ebb-8ce3-729c724e368d",
-          "urn:36c1aece-90bf-4233-9092-29463e67e4db",
-          "urn:36c1aece-90bf-4233-9092-29463e67e4db"
+          "urn:c9aa26ff-a1f8-4824-8a96-f91a726f789c",
+          "urn:c9aa26ff-a1f8-4824-8a96-f91a726f789c",
+          "urn:c9aa26ff-a1f8-4824-8a96-f91a726f789c",
+          "urn:98eb07b2-ad19-45b5-838e-7d07c298d486",
+          "urn:98eb07b2-ad19-45b5-838e-7d07c298d486",
+          "urn:5e9efed4-3b10-43c0-a768-ea923c907d92",
+          "urn:8676198f-410b-4255-8171-7673e732fe7f",
+          "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39",
+          "urn:3f4a68bc-b2d6-4695-92e4-1eaf496365cf",
+          "urn:e3fbf26f-e9cf-49ac-b999-37978b1a2f26",
+          "urn:5892f4d5-ff68-4975-b9c4-b358835454b7",
+          "urn:e4e69c8b-361e-47c9-b4b2-1f9791d75970",
+          "urn:3f6ffef3-5208-4159-ae62-ec1f56f34b35",
+          "urn:dbf4cddc-cc53-45dd-bdb8-ceefca12fb5d",
+          "urn:55edab04-2d8f-4fad-93b5-f00b8c4b1551",
+          "urn:611642a2-088a-4b7e-b2e8-65eab6f3b9a3",
+          "urn:085a4987-65f9-4842-bea9-60b04382d7ff",
+          "urn:085a4987-65f9-4842-bea9-60b04382d7ff"
         ]
       },
       {
-        "@id": "urn:9254ee69-c36c-4f52-a2d5-9b6f37782f50",
+        "@id": "urn:a2836735-4d3b-45d7-8aa6-2414149e2686",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:ac767057-e6a1-4207-8818-bbb01d04b597",
-          "urn:ac767057-e6a1-4207-8818-bbb01d04b597",
-          "urn:ac767057-e6a1-4207-8818-bbb01d04b597"
+          "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39",
+          "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39",
+          "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39"
         ]
       },
       {
-        "@id": "urn:d2ec1e1f-6b72-4cd0-8bdd-015b1729e259",
+        "@id": "urn:53cd4a1b-2c9f-47d9-ab78-307d86656924",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:f8fc8443-30d8-4435-8ef5-98fd326b0325",
+        "AssociatedWith": "urn:43f6af6c-9154-48de-a5ff-3d6037e27b5b",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:a745a2fb-4636-4f0f-829b-76e7ea216015"
+          "urn:a79bff62-4ee1-4d65-98da-116a57aa3f55"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:93adf029-3670-4112-a2a2-66bb7b20a01a",
+        "@id": "urn:b51b4e36-1b3d-46c2-94e0-75cc74a1bda8",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_other_template/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:bc1d54d7-90b4-444e-8ad4-93948efd48fd",
+        "@id": "urn:7db1d5a7-bf84-4146-830b-ce661f6fdee9",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_other_template/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:fe3e4131-9b71-4cde-ae30-0c848b08a6d6",
+        "@id": "urn:2b56fc0d-dbd7-46b0-a6b9-e669e98c5221",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "./afni_other_template/sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:4b9cb81a-cc65-4ee0-860f-d32f13773fb2",
+        "@id": "urn:2cc59175-6303-4cd7-9c05-77a398e2fc83",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:d81a5c5b-8b03-48f8-92ae-3e9895636e1e",
+        "GeneratedBy": "urn:c75f3793-ca85-4574-8a96-672272ecca70",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:84097940-5c81-4555-9729-01a2f2ef11b7",
+        "@id": "urn:49c149bd-506d-43dc-a748-105569e82a6a",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:d81a5c5b-8b03-48f8-92ae-3e9895636e1e"
+        "GeneratedBy": "urn:c75f3793-ca85-4574-8a96-672272ecca70"
       },
       {
-        "@id": "urn:0c860fc3-fbed-464c-a458-8e2221e88652",
+        "@id": "urn:8bd0fa0e-165e-4ade-b4bf-ecf95fcbb251",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:d81a5c5b-8b03-48f8-92ae-3e9895636e1e"
+        "GeneratedBy": "urn:c75f3793-ca85-4574-8a96-672272ecca70"
       },
       {
-        "@id": "urn:0613b8de-2123-4f1e-9661-006a4bb01370",
+        "@id": "urn:e410dc89-ca64-454c-a756-919497c92a0e",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:d81a5c5b-8b03-48f8-92ae-3e9895636e1e"
+        "GeneratedBy": "urn:c75f3793-ca85-4574-8a96-672272ecca70"
       },
       {
-        "@id": "urn:b5ef5827-8b9c-420a-ba5d-ff074a4816e4",
+        "@id": "urn:65d6a155-cb7f-4ea1-94c5-bfc22a313c9e",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "./afni_other_template/sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:2c2a2a5f-12d9-443d-8307-038476e05738",
+        "@id": "urn:8fdab540-bd37-46a4-99a9-1dfbd560ff1f",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:38551fef-e588-44a6-b934-93cb671a56f6"
+        "GeneratedBy": "urn:b0a3cb2e-f8c9-4140-bb6e-375dbe8a71f3"
       },
       {
-        "@id": "urn:b3d8eda4-b9f9-403e-a4c2-21b5fb08c82e",
+        "@id": "urn:4f73c006-9fd9-4d4f-aa02-9fa910e1b0c1",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:bcca5728-ee7a-4910-b04e-4afe1f0100d4",
+        "@id": "urn:31720454-a32b-42e8-a625-b19ca4e33338",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:c32b3dea-3bb5-460f-836b-f0d37c0c92f4",
+        "@id": "urn:95860802-70fd-4691-a3bd-a59496b3f0b5",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:1a83e7f6-a856-4c18-85fd-ad5fae8e1954",
+        "GeneratedBy": "urn:ebca06a5-6084-4d81-90c4-3a4f6991a90d",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:1e06fa49-f568-4a8d-95b1-1b00344d42c2",
+        "@id": "urn:a776bbd5-c892-4326-8d84-4c7f41f01d09",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:1a83e7f6-a856-4c18-85fd-ad5fae8e1954",
+        "GeneratedBy": "urn:ebca06a5-6084-4d81-90c4-3a4f6991a90d",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:b3d8eda4-b9f9-403e-a4c2-21b5fb08c82e",
+        "@id": "urn:4f73c006-9fd9-4d4f-aa02-9fa910e1b0c1",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:1e97af62-8e80-4922-b801-9fbfd1c08e95",
+        "@id": "urn:667bb98f-a330-4748-82b9-e8d5bdf42e15",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:c3ce6ca2-204a-4e32-bd85-d7fe6eaf08a9",
+        "GeneratedBy": "urn:14e6bb01-26e9-4060-98c5-b0a23501fba5",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
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@@ -308,7 +308,7 @@
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@@ -316,16 +316,16 @@
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@@ -333,7 +333,7 @@
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@@ -341,7 +341,7 @@
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@@ -349,16 +349,16 @@
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@@ -366,16 +366,16 @@
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+        "@id": "urn:418ec691-7af9-488a-84a3-f4c7d51256e1",
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@@ -383,7 +383,7 @@
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@@ -391,7 +391,7 @@
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@@ -399,7 +399,7 @@
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@@ -407,7 +407,7 @@
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@@ -415,7 +415,7 @@
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@@ -423,7 +423,7 @@
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@@ -431,7 +431,7 @@
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@@ -439,97 +439,97 @@
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@@ -537,7 +537,7 @@
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@@ -545,7 +545,7 @@
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@@ -553,7 +553,7 @@
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@@ -561,7 +561,7 @@
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@@ -569,7 +569,7 @@
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@@ -577,7 +577,7 @@
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@@ -585,7 +585,7 @@
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@@ -593,7 +593,7 @@
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@@ -601,7 +601,7 @@
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@@ -609,61 +609,61 @@
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@@ -671,7 +671,7 @@
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@@ -794,7 +794,7 @@
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@@ -802,7 +802,7 @@
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@@ -810,7 +810,7 @@
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@@ -818,133 +818,133 @@
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@@ -952,34 +952,34 @@
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@@ -987,10 +987,10 @@
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diff --git a/examples/from_parsers/afni/afni_thr_clustfwep05_proc.jsonld b/examples/from_parsers/afni/afni_thr_clustfwep05_proc.jsonld
index b38f0c3f8..e1a113da0 100644
--- a/examples/from_parsers/afni/afni_thr_clustfwep05_proc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_clustfwep05_proc.jsonld
@@ -4,7 +4,7 @@
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-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:b415fe53-55a1-4e80-aead-40b447d50de0",
+        "@id": "urn:623eb35c-21fa-4b31-8073-dfdba666871f",
         "Label": "cp",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "cp ./afni_clusterwise_fwe/tone_counting_onset_times.txt ./afni_clusterwise_fwe/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:5599d82d-e9dc-49b9-ba3d-62d2fef3c704",
-          "urn:b1279df4-a14f-424d-99d8-d4d0949073da"
+          "urn:b144c679-bde6-4e53-9a44-652deac50c93",
+          "urn:e4344175-20ec-4b1d-b49f-7542d37e6caa"
         ]
       },
       {
-        "@id": "urn:7a540544-90c6-42f9-9ca4-3ccb8a141ace",
+        "@id": "urn:e9dcd1ce-f9a5-4c85-8831-8e2118f3e436",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:82a997bf-9ad2-4b4d-9986-f09af68ac7e7"
+          "urn:52cfe718-8d39-42bd-9e65-221b5e1969e8"
         ]
       },
       {
-        "@id": "urn:045c8348-5186-4209-9572-bd0dcd050d80",
+        "@id": "urn:57c70746-bc5d-4d0f-ac6b-cf37f0e790d1",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:39abacfe-7ecb-410e-bfc2-89bb11de297b"
+          "urn:0c66e2d5-902c-44fa-b9ac-fed0bf0f581f"
         ]
       },
       {
-        "@id": "urn:33ff223f-e6e1-46fb-93ae-370fded0fdba",
+        "@id": "urn:1dc5978a-3a2c-41fe-93da-da44031facdc",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:dc0b0f52-290f-4c61-b4d9-9f39ad232080"
+          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
         ]
       },
       {
-        "@id": "urn:d0b5d93b-5323-4075-9d8b-c8da048aee8d",
+        "@id": "urn:771015e0-2dcd-4c90-b82f-1910bff41ca0",
         "Label": "cat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:7bcc4566-fca1-49a5-88eb-00f9726c62a7"
+          "urn:0ae1180e-9758-449b-96a6-998f6c382716"
         ]
       },
       {
-        "@id": "urn:c6449688-2b7f-471b-b844-de7ae3290534",
+        "@id": "urn:c11c7f24-d9c0-48d8-9db1-fe7b3d9f617f",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:dc0b0f52-290f-4c61-b4d9-9f39ad232080"
+          "urn:591e78c6-f12c-49e6-b053-b365d9daf3b8"
         ]
       },
       {
-        "@id": "urn:f59a50ab-7372-4da2-bb77-52336a109fac",
+        "@id": "urn:7d6b4ad3-03f6-4196-a307-35cc3bd624d6",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:ee1cb0d3-c3d2-45c5-9798-ac85e16ec0e7",
-          "urn:63270e11-f9c1-4666-a40b-1e3a1b935614"
+          "urn:05e8ba57-1f57-44a5-bad6-794adef06065",
+          "urn:d124a1ec-ede9-4c55-9f3b-5534ba2d4bf1"
         ]
       },
       {
-        "@id": "urn:44ca55e2-233d-49f0-b27c-c1bbae75800c",
+        "@id": "urn:5a483cd7-a169-420c-b682-fe81b2fb4411",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:eb2155a7-fa20-4020-bfde-d831c335525c",
-          "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f"
+          "urn:4d9e730a-a6b0-4067-8b79-32276517f8bc",
+          "urn:987e241d-ef25-4cbc-a063-20943d5391b1"
         ]
       },
       {
-        "@id": "urn:eff31da6-2401-4b0b-9b66-ce85299c71b1",
+        "@id": "urn:7d4825ae-8174-4ca0-9365-17e45a88294e",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:e7c87b95-68d4-46a7-9868-7002c48bfb56"
+          "urn:8e09f9b8-62f0-43fa-9be3-9d37b3e3ffb0"
         ]
       },
       {
-        "@id": "urn:8b3e58d2-01fa-49f8-a673-9431aaccfc47",
+        "@id": "urn:8a10bc3b-8f5a-48c0-86e4-74a908ff2dff",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:c3e90ffd-834c-472b-87c2-028326d08e1a"
+          "urn:f419f0a0-b006-4fad-abe7-2d18c1268838"
         ]
       },
       {
-        "@id": "urn:bfdf23b1-84f5-493b-af60-ac30b7f045e3",
+        "@id": "urn:ef0a17e7-2410-459e-aa85-dd27e49780c9",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:c3e90ffd-834c-472b-87c2-028326d08e1a"
+          "urn:f419f0a0-b006-4fad-abe7-2d18c1268838"
         ]
       },
       {
-        "@id": "urn:9daf71b2-6838-42b4-a3e4-bd1d76fe79f9",
+        "@id": "urn:f8d879cd-b835-4036-a683-af5dccf73a8e",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:e7c87b95-68d4-46a7-9868-7002c48bfb56"
+          "urn:8e09f9b8-62f0-43fa-9be3-9d37b3e3ffb0"
         ]
       },
       {
-        "@id": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
+        "@id": "urn:816a65be-5552-4100-89ab-2eb490723213",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:b02e72d6-09fc-41b9-b8c1-24d50bab9a4a",
-          "urn:c3e90ffd-834c-472b-87c2-028326d08e1a",
-          "urn:4c89ad48-ba0f-45e9-b026-e813b7816d32"
+          "urn:6dff238f-00fc-4ce2-9c25-489dbde3e9e7",
+          "urn:aee884d0-ebf7-4771-87a5-0ca4fe8a0407",
+          "urn:f419f0a0-b006-4fad-abe7-2d18c1268838"
         ]
       },
       {
-        "@id": "urn:8b77e7f5-fa5d-43fe-a8c3-caf66c861b43",
+        "@id": "urn:3ac15d53-254f-4af7-9550-dbf93b032f0a",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:b02e72d6-09fc-41b9-b8c1-24d50bab9a4a",
-          "urn:b5bb999c-2c05-4151-8a2a-4fec1f086e87",
-          "urn:4c89ad48-ba0f-45e9-b026-e813b7816d32"
+          "urn:6dff238f-00fc-4ce2-9c25-489dbde3e9e7",
+          "urn:aee884d0-ebf7-4771-87a5-0ca4fe8a0407",
+          "urn:fa158950-3648-4ab8-a9b3-b11a2c48ac17"
         ]
       },
       {
-        "@id": "urn:41002437-cbf0-4db7-9a60-637d98c15b27",
+        "@id": "urn:ab4edefa-3c5c-4fc8-bdfc-207e67b483bb",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:b463f3ce-4f90-4f0c-8df8-992655455333"
+          "urn:6bdf816f-71a1-4910-bbe8-023bcc9f033f"
         ]
       },
       {
-        "@id": "urn:2e4207ad-de38-44b4-85b0-5c1ac384e6c8",
+        "@id": "urn:758ad9e2-7feb-4de4-928e-1f722e1209d0",
         "Label": "cat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:04b2b95f-4706-4a8e-be80-12e76066f1b1"
+          "urn:59f89e09-43f9-4f11-a93f-2fc0517e82f3"
         ]
       },
       {
-        "@id": "urn:338b602f-d83f-4655-8404-32c1d8fb3a51",
+        "@id": "urn:74469c27-c574-4f02-9288-00dcb5161c82",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:1c715c78-02eb-4649-93ce-b416be729b3b"
+          "urn:8880cc2d-05aa-4bcd-894f-f104ec88d7ae"
         ]
       },
       {
-        "@id": "urn:12361698-19e6-44f0-b3c4-b740dfe8a626",
+        "@id": "urn:b97857bc-8e1c-448e-82f9-d862603dac3a",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:3717a4e1-99f6-4b60-9f13-13f30a9f180d",
-          "urn:ba95b31e-c044-4e0b-ae51-ca7bdbacd87e"
+          "urn:1fd805ed-6069-4b1c-b02f-478a21ca0f26",
+          "urn:5bad2a8e-da77-4dab-8f6a-3821b93f7584"
         ]
       },
       {
-        "@id": "urn:d66f2975-367e-471e-b934-9427c9784ed2",
+        "@id": "urn:aae37e92-7f20-4842-85f6-e8dea5c49544",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:b02e72d6-09fc-41b9-b8c1-24d50bab9a4a"
+          "urn:aee884d0-ebf7-4771-87a5-0ca4fe8a0407"
         ]
       },
       {
-        "@id": "urn:d839cce9-09a1-4f7f-98a1-1111d118824c",
+        "@id": "urn:9b02e101-35be-41fb-81cb-4ebd4c4fb7ad",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:e12e8133-9cfa-4aed-a7ab-09d79b1e2745"
+          "urn:f7c6cade-4218-4595-9786-416f1729ab69"
         ]
       },
       {
-        "@id": "urn:18090ee8-2b42-44ac-a89c-2bbc77ce84d2",
+        "@id": "urn:3ab3463b-3e76-4459-b00c-557a44d4c9c9",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:b7e3dec0-55c8-47e7-841e-342eaf436e58",
-          "urn:7c5d805c-8cc9-4593-99f1-fc70e69f54c5"
+          "urn:69a32e1f-1ad9-4ef3-bd2f-8f089d7c77a2",
+          "urn:ba9a1f75-9c10-4b6d-a32e-c00a9bf2b14d"
         ]
       },
       {
-        "@id": "urn:813625a1-5cd9-48f5-b1fd-a31afcc8ab5c",
+        "@id": "urn:791a37dd-7139-4be3-8f65-6c9aeb2c26fc",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:ec7ca64d-b4b1-4d1a-b564-051260583801"
+          "urn:f4774edf-b61c-4c85-8419-6b40dc2dbefb"
         ]
       },
       {
-        "@id": "urn:9f9a7b54-8e6c-416f-9fde-1ef0401fb67a",
+        "@id": "urn:76cbe384-e9c5-4aee-a9eb-7366d46724c1",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:ceab5453-bdfe-47df-b649-f9d6fda5dbce",
+        "@id": "urn:bf3a439e-808c-464e-9cd8-69074082b387",
         "Label": "3dresample",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:b02e72d6-09fc-41b9-b8c1-24d50bab9a4a",
-          "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f"
+          "urn:aee884d0-ebf7-4771-87a5-0ca4fe8a0407",
+          "urn:bca2de57-cd10-45e9-ad12-fe4cdceb7863"
         ]
       },
       {
-        "@id": "urn:e78b162c-1f30-4cdf-863a-8e2c248887f0",
+        "@id": "urn:5c5699fb-c65a-4996-825d-ce14595563a1",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:6f8690c8-59d4-435b-bde0-3a7bbd870e45"
+          "urn:e81bd603-ebba-48a7-b6bd-4c1a05624465"
         ]
       },
       {
-        "@id": "urn:219450be-d458-4eb8-80d4-d28e1d78b728",
+        "@id": "urn:ae87f8ec-8897-45c2-ad21-3a90f68cc8a3",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:8d1b4cad-4104-4023-a010-1b4f7ef2a12b",
-          "urn:241187a5-ac48-4a1e-8598-30c933d02e3f"
+          "urn:34719411-7497-4c69-b992-c6f535d92daf",
+          "urn:954374eb-04ef-496a-9bdf-67dd9f2e356f"
         ]
       },
       {
-        "@id": "urn:f8cb0e67-b771-4013-aef5-f3570952ec55",
+        "@id": "urn:62bdae8b-6b1c-4858-b2cf-d5c2ff2cb091",
         "Label": "3ddot",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:8d1b4cad-4104-4023-a010-1b4f7ef2a12b",
-          "urn:241187a5-ac48-4a1e-8598-30c933d02e3f"
+          "urn:34719411-7497-4c69-b992-c6f535d92daf",
+          "urn:954374eb-04ef-496a-9bdf-67dd9f2e356f"
         ]
       },
       {
-        "@id": "urn:927ff65e-1d3e-4803-8c17-18433a1607c1",
+        "@id": "urn:6a92fc75-06fa-4645-ada0-51d2db7973ff",
         "Label": "3dresample",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:7688d9d7-da55-4bd4-9043-3ecdceb1cf4e",
-          "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f"
+          "urn:19061152-20cb-44a9-b105-37ea07b1c40c",
+          "urn:bca2de57-cd10-45e9-ad12-fe4cdceb7863"
         ]
       },
       {
-        "@id": "urn:6f070701-23cb-4ab5-a385-af737f811d7e",
+        "@id": "urn:cea362b5-c487-4ac4-83e4-18c7930ab27b",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:c62f9d14-a51a-4fee-8038-d735433b3e7c"
+          "urn:3d0a295f-b783-4a04-94ac-2699c42f2e93"
         ]
       },
       {
-        "@id": "urn:086efdc4-e2eb-4773-b6b6-042e622a6721",
+        "@id": "urn:d3466c6f-52aa-4ec1-9675-14ca8a0c829d",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:ec7ca64d-b4b1-4d1a-b564-051260583801"
+          "urn:f4774edf-b61c-4c85-8419-6b40dc2dbefb"
         ]
       },
       {
-        "@id": "urn:155a15be-dfc8-497f-bcab-b479fbce21c2",
+        "@id": "urn:d49417ba-b147-45e6-b7ff-817b9cb3b843",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:ec7ca64d-b4b1-4d1a-b564-051260583801",
-          "urn:d1727f99-2840-4f61-b0fc-7a3b7833c964",
-          "urn:ba95b31e-c044-4e0b-ae51-ca7bdbacd87e"
+          "urn:5bad2a8e-da77-4dab-8f6a-3821b93f7584",
+          "urn:b948ef91-aa46-4140-b8b7-c6abf40b9022",
+          "urn:f4774edf-b61c-4c85-8419-6b40dc2dbefb"
         ]
       },
       {
-        "@id": "urn:92b61693-efb7-4c2d-aebb-8faad94ac4ed",
+        "@id": "urn:f3acd084-9b36-409e-a912-a64754a2c496",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:fcef7c15-eb1a-43d0-a496-81c1c8943ae1"
+          "urn:aae0a1f9-bf6f-45ac-88dc-8bb6df4ed04d"
         ]
       },
       {
-        "@id": "urn:8be00b9f-a0ec-4b9b-9f74-afa0e2539204",
+        "@id": "urn:dc701791-8a77-4bd3-824a-7020c444d4ad",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:fcef7c15-eb1a-43d0-a496-81c1c8943ae1"
+          "urn:aae0a1f9-bf6f-45ac-88dc-8bb6df4ed04d"
         ]
       },
       {
-        "@id": "urn:5e17a001-8b17-426f-b998-3a9e2f1ac345",
+        "@id": "urn:6f970a8c-d670-4c0e-8b97-41839e3c3c90",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:fcef7c15-eb1a-43d0-a496-81c1c8943ae1"
+          "urn:aae0a1f9-bf6f-45ac-88dc-8bb6df4ed04d"
         ]
       },
       {
-        "@id": "urn:9aaacc92-ad1f-44d1-b791-010d10a306c4",
+        "@id": "urn:6f0bc278-4854-410a-8ce5-2c52d30c5e7b",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:680dcb93-a5e5-4c9c-90c1-fc944c597c01"
+          "urn:62ffd710-b951-4dcd-b02a-998f4f6c013a"
         ]
       },
       {
-        "@id": "urn:e7565259-771d-4514-b0f8-511867fdf0d4",
+        "@id": "urn:24abf5de-fe14-4a83-8d3c-5e3a723811fc",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:a436f385-0f2b-4f63-9e9f-3fc989a38ba4"
+          "urn:91b73b5b-9e5a-4fce-b26f-5ae449d84088"
         ]
       },
       {
-        "@id": "urn:1493a23b-141b-40c4-8fce-42e43fa48cab",
+        "@id": "urn:26ec0d70-3f21-4bfe-be83-27f9b8eda5f9",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:680dcb93-a5e5-4c9c-90c1-fc944c597c01"
+          "urn:62ffd710-b951-4dcd-b02a-998f4f6c013a"
         ]
       },
       {
-        "@id": "urn:be104b26-6320-4707-bd15-ad1549f178d7",
+        "@id": "urn:2efbc0e7-5b73-40dc-aab5-ba4b75054202",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:89dafdd6-e4c2-414e-8682-1fff8940a2aa"
+          "urn:f9da1d1c-0b53-4cf6-8ce5-8d37378b9b39"
         ]
       },
       {
-        "@id": "urn:a8939bb1-b8c6-433f-bfaf-777e2e85d82e",
+        "@id": "urn:2f09814e-eede-4696-bec8-1ffdf054d5e3",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:c6382124-21af-41e5-8d48-6db6ccdc8117"
+          "urn:9c40682e-36d5-484f-a9ff-c5cfe101b371"
         ]
       },
       {
-        "@id": "urn:4bfa309f-9cfd-4a8e-a067-25197776aa14",
+        "@id": "urn:f03a6b50-e568-43a5-b8d2-7f9a7461a358",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:4cc9fc91-8348-47c7-a8b1-4d3afb013835",
-          "urn:1f2a2915-43a9-4fe1-b64f-de93ec4d4b9f",
-          "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f"
+          "urn:9233b191-251a-4f59-890e-8d49c8a317bc",
+          "urn:aec70b1e-a52a-4c34-afbe-58bab274e85c",
+          "urn:bca2de57-cd10-45e9-ad12-fe4cdceb7863"
         ]
       },
       {
-        "@id": "urn:86049fdc-651f-4842-9c9c-97843fe0758a",
+        "@id": "urn:12c84262-3f99-41ec-a2e4-182b6dd07816",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:cb8c893f-e445-4427-95f7-59c56cd97693"
+          "urn:579d4770-d941-467a-9f45-5d41330a8ad1"
         ]
       },
       {
-        "@id": "urn:d7c888ac-cfa4-4ad6-b0f2-68da3b23253d",
+        "@id": "urn:35549801-9a17-47fb-97c5-a7626cf33543",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:78ef53dc-3b7e-49d2-aab1-b1fe345584d8",
+        "@id": "urn:f07ae6c3-d6bc-42a7-861b-015c6da45356",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:d6d5a8d3-4d08-467c-b393-de558c52d4f0"
+          "urn:868c4d90-2686-4717-8992-e2f78f71982f"
         ]
       },
       {
-        "@id": "urn:65ecdbb9-1fb9-4d3d-bd4d-ad55561921f9",
+        "@id": "urn:4aeeec3d-c0c4-41b2-9b59-e75fc2b134e9",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:fb2f5584-9e8c-454b-83ee-e6ba10178c44",
-          "urn:a915c231-05a8-4b3d-b46a-4b0fc16d7322"
+          "urn:4079b5d6-6d03-4f4f-8e0b-feafb5108030",
+          "urn:4b6329f7-79ad-4a55-aa01-952b8b7513db"
         ]
       },
       {
-        "@id": "urn:6b074efa-a20c-49fa-a8c6-75535054c1d1",
+        "@id": "urn:97a7a594-07de-445f-a94a-6a1132660219",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:9d68b561-06ce-47ff-9fa6-4ac57965c20e"
+          "urn:5ab4d3ac-a283-4eb9-a6fe-522e161c6524"
         ]
       },
       {
-        "@id": "urn:3d5d9307-5d13-47ee-beab-a43df5d0d8e8",
+        "@id": "urn:c9d55f80-276d-4292-ac96-5869007a076f",
         "Label": "1dcat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:20da531a-2290-4fc3-af61-285de3e14704"
+          "urn:58710505-ae1c-4e15-8b8d-49eb446c14c6"
         ]
       },
       {
-        "@id": "urn:685fe902-3622-47ca-a82d-f1576dce6155",
+        "@id": "urn:763b7462-e409-4572-ab59-5401b92a5da6",
         "Label": "1dcat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:93397f25-6ccb-4dbd-870a-4893c51c0c86"
+          "urn:20835fc2-3de2-4f26-a384-721971a8011c"
         ]
       },
       {
-        "@id": "urn:8702875e-666c-4098-97a4-b8382438b6e7",
+        "@id": "urn:7e5081e7-c009-4256-9c58-49b629cdadd5",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:d08088e2-92bc-4067-808d-064cfd0084ce"
+          "urn:f6d1f866-f52d-40b0-a893-4ba09265a1ce"
         ]
       },
       {
-        "@id": "urn:d4f48c80-1f94-4011-b6f1-94fc0faed774",
+        "@id": "urn:2afece4b-1134-467c-b01a-33d391048b34",
         "Label": "1dcat",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:d08088e2-92bc-4067-808d-064cfd0084ce"
+          "urn:f6d1f866-f52d-40b0-a893-4ba09265a1ce"
         ]
       },
       {
-        "@id": "urn:da60e1fe-01dc-4dd7-a2e7-2daf34e5c853",
+        "@id": "urn:39f1ca8b-66d3-4d02-b1e6-5af2de7b426a",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f"
+          "urn:bca2de57-cd10-45e9-ad12-fe4cdceb7863"
         ]
       },
       {
-        "@id": "urn:4d0b4182-47ba-4a78-bd74-e3f99493f451",
+        "@id": "urn:19fb39c5-b85c-4be4-8f4a-c8be81315b19",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f"
+          "urn:bca2de57-cd10-45e9-ad12-fe4cdceb7863"
         ]
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-        "@id": "urn:678c01d1-55b3-48e4-80a7-50bd58e40b65",
+        "@id": "urn:60e714fe-8ee1-42e7-a6da-d0bd9dde8c93",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f"
+          "urn:bca2de57-cd10-45e9-ad12-fe4cdceb7863"
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-        "@id": "urn:97c24bcb-3fcd-4a5e-bd82-05e213699d99",
+        "@id": "urn:cbc9d9a1-d1a6-44f4-a551-6a3c652bccbc",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:d5f274be-3cda-4bfc-bca6-4afcd1622e19"
+          "urn:7875fa28-0d90-44a1-a518-b16af69727f1"
         ]
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-        "@id": "urn:1858825f-50b4-4f73-9b5a-28e9ce1dc88f",
+        "@id": "urn:608b662d-4757-4c39-94d5-44c28ff93938",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:c79be97e-b015-4120-b508-621e5bd01049",
+        "AssociatedWith": "urn:eec7ccce-0779-437f-8450-c4b6f536a7bc",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
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@@ -586,22 +586,22 @@
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-        "@id": "urn:4b6b1d21-b999-489b-8adf-0ef6a72be07b",
+        "@id": "urn:5ecbb2f9-d628-4980-8bed-9166dcee801a",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:f0373923-2d8e-4aae-9bf1-9b6736366d75",
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+        "@id": "urn:2a5ca020-0854-4c98-8388-e8f1d6e3fa9d",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:22644854-5b21-46b9-8f42-4e730f48909b"
+        "GeneratedBy": "urn:07c230b3-a6ca-4c45-9fb4-593e85fba620"
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+        "@id": "urn:e4344175-20ec-4b1d-b49f-7542d37e6caa",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_clusterwise_fwe/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
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+        "@id": "urn:b144c679-bde6-4e53-9a44-652deac50c93",
         "Label": "tone_counting_probe_duration.txt",
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@@ -617,13 +617,13 @@
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+        "@id": "urn:5620cc29-8198-4896-98b0-1649f1f44ded",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:b415fe53-55a1-4e80-aead-40b447d50de0"
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+        "@id": "urn:52cfe718-8d39-42bd-9e65-221b5e1969e8",
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         "digest": {
@@ -631,13 +631,13 @@
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+        "@id": "urn:030f431e-c8bd-4ad2-a374-1f115df2930e",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:7a540544-90c6-42f9-9ca4-3ccb8a141ace"
+        "GeneratedBy": "urn:e9dcd1ce-f9a5-4c85-8831-8e2118f3e436"
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+        "@id": "urn:0c66e2d5-902c-44fa-b9ac-fed0bf0f581f",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -645,13 +645,13 @@
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+        "@id": "urn:a5f0a28c-5544-4428-87a1-a296cda93f56",
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         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:045c8348-5186-4209-9572-bd0dcd050d80"
+        "GeneratedBy": "urn:57c70746-bc5d-4d0f-ac6b-cf37f0e790d1"
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         "digest": {
@@ -659,16 +659,16 @@
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+        "@id": "urn:f529c4f5-fab8-406d-98a0-0472739c6b6f",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:33ff223f-e6e1-46fb-93ae-370fded0fdba",
+        "GeneratedBy": "urn:1dc5978a-3a2c-41fe-93da-da44031facdc",
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+        "@id": "urn:0ae1180e-9758-449b-96a6-998f6c382716",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -676,25 +676,25 @@
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-        "@id": "urn:a550ea68-9b3c-4245-8af8-acb1e94e8652",
+        "@id": "urn:19f7f936-05fb-4194-a6d8-10d878641d10",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:d0b5d93b-5323-4075-9d8b-c8da048aee8d",
+        "GeneratedBy": "urn:771015e0-2dcd-4c90-b82f-1910bff41ca0",
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+        "@id": "urn:146689d0-63e8-4509-9d49-e9189c351ef4",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:c6449688-2b7f-471b-b844-de7ae3290534",
+        "GeneratedBy": "urn:c11c7f24-d9c0-48d8-9db1-fe7b3d9f617f",
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+        "@id": "urn:d124a1ec-ede9-4c55-9f3b-5534ba2d4bf1",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -702,7 +702,7 @@
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-        "@id": "urn:63270e11-f9c1-4666-a40b-1e3a1b935614",
+        "@id": "urn:05e8ba57-1f57-44a5-bad6-794adef06065",
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         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -710,16 +710,16 @@
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       {
-        "@id": "urn:0c2f6818-7e94-4d28-8d58-046bef4826bd",
+        "@id": "urn:8331d741-04e7-4367-ab1f-0e51decade3a",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:f59a50ab-7372-4da2-bb77-52336a109fac",
+        "GeneratedBy": "urn:7d6b4ad3-03f6-4196-a307-35cc3bd624d6",
         "digest": {
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-        "@id": "urn:eb2155a7-fa20-4020-bfde-d831c335525c",
+        "@id": "urn:4d9e730a-a6b0-4067-8b79-32276517f8bc",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -727,7 +727,7 @@
         }
       },
       {
-        "@id": "urn:224754da-1ea0-40db-a26f-bf12ec3e2c9f",
+        "@id": "urn:987e241d-ef25-4cbc-a063-20943d5391b1",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -735,7 +735,7 @@
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       },
       {
-        "@id": "urn:e7c87b95-68d4-46a7-9868-7002c48bfb56",
+        "@id": "urn:8e09f9b8-62f0-43fa-9be3-9d37b3e3ffb0",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -743,16 +743,16 @@
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       },
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-        "@id": "urn:e12e8133-9cfa-4aed-a7ab-09d79b1e2745",
+        "@id": "urn:f7c6cade-4218-4595-9786-416f1729ab69",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:eff31da6-2401-4b0b-9b66-ce85299c71b1",
+        "GeneratedBy": "urn:7d4825ae-8174-4ca0-9365-17e45a88294e",
         "digest": {
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+        "@id": "urn:f419f0a0-b006-4fad-abe7-2d18c1268838",
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         "digest": {
@@ -760,34 +760,34 @@
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+        "@id": "urn:10dfb433-94b4-4ea4-b283-3fec0ed1cbd2",
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         "AtLocation": "mat.r$run.vr.aff12.1D",
-        "GeneratedBy": "urn:8b3e58d2-01fa-49f8-a673-9431aaccfc47",
+        "GeneratedBy": "urn:8a10bc3b-8f5a-48c0-86e4-74a908ff2dff",
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+        "@id": "urn:a5e308d1-648c-48a2-80f6-91ea050a021c",
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         "AtLocation": "rm.epi.all1",
-        "GeneratedBy": "urn:bfdf23b1-84f5-493b-af60-ac30b7f045e3",
+        "GeneratedBy": "urn:ef0a17e7-2410-459e-aa85-dd27e49780c9",
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+        "@id": "urn:6dff238f-00fc-4ce2-9c25-489dbde3e9e7",
         "Label": "mat.r$run.warp.aff12.1D",
         "AtLocation": "mat.r$run.warp.aff12.1D",
-        "GeneratedBy": "urn:9daf71b2-6838-42b4-a3e4-bd1d76fe79f9",
+        "GeneratedBy": "urn:f8d879cd-b835-4036-a683-af5dccf73a8e",
         "digest": {
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+        "@id": "urn:aee884d0-ebf7-4771-87a5-0ca4fe8a0407",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -795,16 +795,16 @@
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       },
       {
-        "@id": "urn:d56be92e-40d9-463a-9e7e-2b14886091df",
+        "@id": "urn:d8dbbd9f-bb1b-4993-b567-a239b9bfc293",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run",
-        "GeneratedBy": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
+        "GeneratedBy": "urn:816a65be-5552-4100-89ab-2eb490723213",
         "digest": {
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+        "@id": "urn:fa158950-3648-4ab8-a9b3-b11a2c48ac17",
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         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -812,16 +812,16 @@
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+        "@id": "urn:3199a455-85e5-4b30-94e5-bb3c78222246",
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         "AtLocation": "rm.epi.1.r$run",
-        "GeneratedBy": "urn:8b77e7f5-fa5d-43fe-a8c3-caf66c861b43",
+        "GeneratedBy": "urn:3ac15d53-254f-4af7-9550-dbf93b032f0a",
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         "digest": {
@@ -829,16 +829,16 @@
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       {
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+        "@id": "urn:9cfed3d2-3adb-4e38-8d3e-24dda4043257",
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-        "GeneratedBy": "urn:41002437-cbf0-4db7-9a60-637d98c15b27",
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@@ -846,16 +846,16 @@
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@@ -863,16 +863,16 @@
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@@ -880,7 +880,7 @@
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@@ -888,34 +888,34 @@
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-        "@id": "urn:20da531a-2290-4fc3-af61-285de3e14704",
+        "@id": "urn:58710505-ae1c-4e15-8b8d-49eb446c14c6",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[3]'",
         "digest": {
@@ -1255,16 +1255,16 @@
         }
       },
       {
-        "@id": "urn:203a5777-2fd4-4238-a79a-099ec0f6019c",
+        "@id": "urn:f99457e7-83a1-4e36-9139-6343f87a9a6b",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:3d5d9307-5d13-47ee-beab-a43df5d0d8e8",
+        "GeneratedBy": "urn:c9d55f80-276d-4292-ac96-5869007a076f",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
         }
       },
       {
-        "@id": "urn:93397f25-6ccb-4dbd-870a-4893c51c0c86",
+        "@id": "urn:20835fc2-3de2-4f26-a384-721971a8011c",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
         "digest": {
@@ -1272,16 +1272,16 @@
         }
       },
       {
-        "@id": "urn:f8b90f86-9945-4f05-90ee-eefb98cb45a9",
+        "@id": "urn:2597f5fb-2041-4dda-b508-1b29f72a5376",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:685fe902-3622-47ca-a82d-f1576dce6155",
+        "GeneratedBy": "urn:763b7462-e409-4572-ab59-5401b92a5da6",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:d08088e2-92bc-4067-808d-064cfd0084ce",
+        "@id": "urn:f6d1f866-f52d-40b0-a893-4ba09265a1ce",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:7f5afc7c-5e37-484d-b2fb-6e381999e4ef",
+        "@id": "urn:5b1e5792-a7c3-4fd3-a40e-1f56638ead1c",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:8702875e-666c-4098-97a4-b8382438b6e7",
+        "GeneratedBy": "urn:7e5081e7-c009-4256-9c58-49b629cdadd5",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:e35beaab-57a1-420d-9217-bf152a1e2ede",
+        "@id": "urn:afa442fa-9ff3-4bea-8b48-6677515236e4",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:d4f48c80-1f94-4011-b6f1-94fc0faed774",
+        "GeneratedBy": "urn:2afece4b-1134-467c-b01a-33d391048b34",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:1f1ad99c-0e00-4a95-ba36-5d0dd79158d6",
+        "@id": "urn:6bbcef9d-c59c-420e-af06-7b51ccae0169",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:da60e1fe-01dc-4dd7-a2e7-2daf34e5c853",
+        "GeneratedBy": "urn:39f1ca8b-66d3-4d02-b1e6-5af2de7b426a",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:e86ccae2-61ff-42f0-b150-66e5f24bf34b",
+        "@id": "urn:053adfcf-45e4-4b25-a9cd-5da93c03211d",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:4d0b4182-47ba-4a78-bd74-e3f99493f451",
+        "GeneratedBy": "urn:19fb39c5-b85c-4be4-8f4a-c8be81315b19",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:0409ad06-cf22-4cc1-b3e0-933604ab29b5",
+        "@id": "urn:164dec41-95f0-4393-bd4e-a73b5b698322",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:678c01d1-55b3-48e4-80a7-50bd58e40b65",
+        "GeneratedBy": "urn:60e714fe-8ee1-42e7-a6da-d0bd9dde8c93",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:d5f274be-3cda-4bfc-bca6-4afcd1622e19",
+        "@id": "urn:7875fa28-0d90-44a1-a518-b16af69727f1",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:798285b2-c0b7-47ff-9dd9-cd8db08a6f5a",
+        "@id": "urn:0b5d9f6c-e4eb-4ece-a250-cd75da76911c",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:1858825f-50b4-4f73-9b5a-28e9ce1dc88f",
+        "GeneratedBy": "urn:608b662d-4757-4c39-94d5-44c28ff93938",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_thr_clustfwep05_proc_bloc.jsonld b/examples/from_parsers/afni/afni_thr_clustfwep05_proc_bloc.jsonld
index 93348f38f..b90e3319a 100644
--- a/examples/from_parsers/afni/afni_thr_clustfwep05_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_clustfwep05_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "@id": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:52bc166d-26d7-4569-93df-4e11d920e06e",
+        "@id": "urn:5a8f14ac-7b0f-4ce8-8fdb-9d518fdc4f58",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_clusterwise_fwe/tone_counting_onset_times.txt ./afni_clusterwise_fwe/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:74badce5-1fae-46aa-b055-750279abb84b",
-          "urn:a3e80646-9e6a-421f-9d5d-36a21303d503",
-          "urn:77eff1ab-01eb-4ea7-8085-3efbc9667ede"
+          "urn:2ff88d43-bf8a-4d17-97fb-032d91ec1903",
+          "urn:9b581ae8-7368-4411-84c6-4d66165bd5c4",
+          "urn:4d350b62-1091-4725-af58-4f40d3f08a39"
         ]
       },
       {
-        "@id": "urn:6fb6a185-0f0e-4cc2-a182-ea48fedca732",
+        "@id": "urn:aa415b9b-bf93-417b-8277-a5c49bd95a27",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:28adcfaf-736c-4b8b-8bc3-d265bf0eba90"
+          "urn:20ea2776-872a-45b1-a331-31916a8cedd1"
         ]
       },
       {
-        "@id": "urn:c506f2c2-9750-4694-a22c-9a59dc47c6cd",
+        "@id": "urn:fc26cdab-5a85-4c01-ab9a-7cbebf471a3e",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:638257a8-0895-48d4-8016-cc60c84f7b3e",
-          "urn:7798a257-63de-4a1e-9e79-f2c54807c99f"
+          "urn:61c386a1-698a-46a2-a770-18e5ec43fcf8",
+          "urn:47b36bbc-f1ff-4bbd-8c90-6f05275ec35f"
         ]
       },
       {
-        "@id": "urn:69de28c5-0c0c-45ce-8afb-bd975bea590c",
+        "@id": "urn:c8440980-089a-4d94-81a2-0e6b7bae9cee",
         "Label": "tshift",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:638257a8-0895-48d4-8016-cc60c84f7b3e"
+          "urn:61c386a1-698a-46a2-a770-18e5ec43fcf8"
         ]
       },
       {
-        "@id": "urn:19e29262-d365-463f-971e-ea6537b869f9",
+        "@id": "urn:36a79a14-45cd-45c0-8d6d-ce8b33c7de70",
         "Label": "align",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:6b5d0405-4cd3-4e91-b83e-54bfc4060735",
-          "urn:6fd8cde4-416a-4eef-bb49-901f85a600f3"
+          "urn:3140a577-2df8-4acd-aa3b-9982b5902b0b",
+          "urn:bc5744d3-5449-453a-ae20-bbc6e990f4b4"
         ]
       },
       {
-        "@id": "urn:0e752515-4b43-4951-829f-65da8aa40859",
+        "@id": "urn:264a0ee7-47b6-4f2c-9bf1-933c6d9ad711",
         "Label": "tlrc",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:50fe8d8d-769b-4640-8a9f-6063c666a718",
-          "urn:b4232f97-2855-4e32-bf87-c66ce2b5c029",
-          "urn:aa535b62-3124-47ac-be27-a5c5b047ea68"
+          "urn:3749b253-8c1c-4ce0-9cca-7efa69b9d860",
+          "urn:82e546a9-cc28-470f-b8c0-e34a95f11b29",
+          "urn:4029cf39-cfd0-4280-88db-02f762e96ce4"
         ]
       },
       {
-        "@id": "urn:b83b346d-bbf3-4ad0-bf40-e52d3ebfca17",
+        "@id": "urn:49f8bfd0-d9cf-49ab-a537-461a68af5ebd",
         "Label": "volreg",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:07255a93-153e-49f8-9bc0-72c6b0ffbe4f",
-          "urn:07255a93-153e-49f8-9bc0-72c6b0ffbe4f",
-          "urn:aa535b62-3124-47ac-be27-a5c5b047ea68",
-          "urn:aaff34bb-d1d7-4bc8-8027-7b2e3324634d",
-          "urn:07255a93-153e-49f8-9bc0-72c6b0ffbe4f",
-          "urn:aaff34bb-d1d7-4bc8-8027-7b2e3324634d",
-          "urn:8c94882f-3654-445d-a224-864aff7c65de",
-          "urn:b71fedb7-1f28-46dd-babc-b3262aaed8e3",
-          "urn:fd044b55-392f-4640-b3f2-3b65833d67cc",
-          "urn:81b58bf8-24f5-4583-852e-b7717232a36c",
-          "urn:fcb23b68-034c-4168-9337-6bdcb3c5554c",
-          "urn:375c7dcd-2880-43fb-8f1b-194947fd0df1",
-          "urn:aaff34bb-d1d7-4bc8-8027-7b2e3324634d",
-          "urn:5f462872-6e3d-45c2-9084-135b50b7d687"
+          "urn:31729c48-ded5-42dc-a3cd-023f138f4414",
+          "urn:31729c48-ded5-42dc-a3cd-023f138f4414",
+          "urn:4029cf39-cfd0-4280-88db-02f762e96ce4",
+          "urn:31729c48-ded5-42dc-a3cd-023f138f4414",
+          "urn:b38f53e7-e341-49ea-9a31-2770d3dc6ab5",
+          "urn:3fdc99b0-81fe-4f18-8a89-48b792cc531f",
+          "urn:b38f53e7-e341-49ea-9a31-2770d3dc6ab5",
+          "urn:da13fe93-74ee-4bbc-af70-243202e89d3e",
+          "urn:d1faa8a8-b3c1-4927-9969-0cff951f9d13",
+          "urn:63cc0ce2-68d0-4a2e-8748-09a05e698e2e",
+          "urn:6782b342-e949-484c-be16-7ceeb178874e",
+          "urn:c9694971-487b-4e16-80c1-daed0bf77c2e",
+          "urn:b38f53e7-e341-49ea-9a31-2770d3dc6ab5",
+          "urn:395827c1-0fc3-4830-8d43-2eef435b48d5"
         ]
       },
       {
-        "@id": "urn:94631ece-05be-4034-979b-e53e9cba0f73",
+        "@id": "urn:bbde888e-4902-42c0-994b-a180d5edff4b",
         "Label": "blur",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:de06699c-4240-4cb5-ac86-00f497114b13",
-          "urn:2145b1ec-29c9-4f38-8fae-e22b03e9d510"
+          "urn:37983702-1bee-45d5-83fd-1fc6bb17e5cb",
+          "urn:ee967986-8707-450c-afb7-ab02b0f84b24"
         ]
       },
       {
-        "@id": "urn:d9b79bf0-3be3-414f-bc87-cea6e2b80f47",
+        "@id": "urn:0a5bddda-cb2a-46e9-9c6b-06fd1e0adb9b",
         "Label": "mask",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:9db814a8-1bcc-44c3-983e-9df4ee6fe2dd",
-          "urn:aaff34bb-d1d7-4bc8-8027-7b2e3324634d",
-          "urn:ecb26611-af49-4f77-9041-82a002d7c2d5",
-          "urn:83c705c4-10e0-4063-9745-7ebce793f929",
-          "urn:3fa86845-cc78-4a61-9b14-b2b6cd058b34",
-          "urn:f9a48e5b-69cd-4f1a-97e0-20b485db7038",
-          "urn:3fa86845-cc78-4a61-9b14-b2b6cd058b34",
-          "urn:f9a48e5b-69cd-4f1a-97e0-20b485db7038",
-          "urn:4d776027-1b79-454d-b119-8be7428aa40a",
-          "urn:ecb26611-af49-4f77-9041-82a002d7c2d5",
-          "urn:53d6fe42-943b-4412-a88b-59d60f4676ce"
+          "urn:07c0c668-0989-448b-bf80-146e799b0890",
+          "urn:b38f53e7-e341-49ea-9a31-2770d3dc6ab5",
+          "urn:b8139844-99ad-49a6-8c8d-581cd3610481",
+          "urn:38c17bbc-be12-48da-8ba9-ce5a9511513a",
+          "urn:77c5d290-e89c-4ae3-b320-2f1c59a8606a",
+          "urn:91ea8032-3aff-4df0-aa5c-1437dda477f2",
+          "urn:77c5d290-e89c-4ae3-b320-2f1c59a8606a",
+          "urn:91ea8032-3aff-4df0-aa5c-1437dda477f2",
+          "urn:5e67d271-f37f-4cc9-9225-f11dbaeaf6dc",
+          "urn:b8139844-99ad-49a6-8c8d-581cd3610481",
+          "urn:1de21354-cb92-4e3e-a1b6-c21a2419f96f"
         ]
       },
       {
-        "@id": "urn:c7c2fc85-476d-4014-8b79-3edde2957456",
+        "@id": "urn:f5e7897e-86de-4fc6-aeab-e2c964c87ea9",
         "Label": "scale",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:9db814a8-1bcc-44c3-983e-9df4ee6fe2dd",
-          "urn:9db814a8-1bcc-44c3-983e-9df4ee6fe2dd",
-          "urn:2f56c0f2-f0d5-4997-9cb7-dc9136310252",
-          "urn:375c7dcd-2880-43fb-8f1b-194947fd0df1"
+          "urn:07c0c668-0989-448b-bf80-146e799b0890",
+          "urn:07c0c668-0989-448b-bf80-146e799b0890",
+          "urn:2c47c9a9-46b1-4440-a9fe-0c7e20eaa6e2",
+          "urn:6782b342-e949-484c-be16-7ceeb178874e"
         ]
       },
       {
-        "@id": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
+        "@id": "urn:bb97fb22-0b0c-4c0a-b43e-9f3f90687556",
         "Label": "regress",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:8965832a-ae7b-4dd0-a768-07c2add9c69a",
-          "urn:8965832a-ae7b-4dd0-a768-07c2add9c69a",
-          "urn:8965832a-ae7b-4dd0-a768-07c2add9c69a",
-          "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
-          "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
-          "urn:ceb18837-f089-46e0-8d15-f53ebe8394c7",
-          "urn:41b4dd62-a1d6-471a-9459-b7c3d9e66545",
-          "urn:6db2c440-a1c5-4be4-be37-c75b9faba368",
-          "urn:d9236ad7-4bbc-4dad-ad64-95059a111499",
-          "urn:ecb26611-af49-4f77-9041-82a002d7c2d5",
-          "urn:b01d3376-c72d-48d5-8d9b-624e86c64704",
-          "urn:cc9700cd-65ba-4289-bd45-05989e9f1060",
-          "urn:610c8f66-d08d-4279-8b6a-ea432da642c9",
-          "urn:aaa7b906-ee6a-4c9e-ad92-0f42cec51ab8",
-          "urn:c71afebf-facf-4f82-9a52-6ac3fc2d6384",
-          "urn:ac9f2384-a0e0-4065-aa27-51ffe9369655",
-          "urn:a824a15d-3234-4f76-9f95-bb38ecf3ba84",
-          "urn:a824a15d-3234-4f76-9f95-bb38ecf3ba84"
+          "urn:22d4dbee-dfa3-4594-87be-9098628c7d66",
+          "urn:22d4dbee-dfa3-4594-87be-9098628c7d66",
+          "urn:22d4dbee-dfa3-4594-87be-9098628c7d66",
+          "urn:62eb0889-4f7f-4b45-afa7-be2f445b4d65",
+          "urn:62eb0889-4f7f-4b45-afa7-be2f445b4d65",
+          "urn:9955b7ff-84e8-4bb5-af94-b072f23ec249",
+          "urn:bbfd5277-2684-4d9a-ac7e-606e1097cf01",
+          "urn:30ccb46f-fa4b-470b-872c-6dab8b65ca90",
+          "urn:b8139844-99ad-49a6-8c8d-581cd3610481",
+          "urn:d7134c48-220f-433f-b3b7-c18b5b63915d",
+          "urn:8a527b2d-12c9-45da-a415-905258b466a6",
+          "urn:71045567-d0c3-44ba-bcaf-76d1cbcbf76c",
+          "urn:7e3356b6-ed4f-4827-9d05-1603c4f6e03d",
+          "urn:aeefcc15-f430-486c-b626-64f77030f168",
+          "urn:e373bebe-5f90-472c-9c49-28fad5288cea",
+          "urn:5a35202d-8bdf-43f7-86af-0b7a0180b55a",
+          "urn:0e149e1c-0eb6-4f8d-8f47-1499c7fbfda6",
+          "urn:0e149e1c-0eb6-4f8d-8f47-1499c7fbfda6"
         ]
       },
       {
-        "@id": "urn:f15d3f76-7e2d-4e64-a7a0-f05a7aabee92",
+        "@id": "urn:3b75dfdd-46fe-4619-a0d1-046d70b4d127",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:ecb26611-af49-4f77-9041-82a002d7c2d5",
-          "urn:ecb26611-af49-4f77-9041-82a002d7c2d5",
-          "urn:ecb26611-af49-4f77-9041-82a002d7c2d5"
+          "urn:b8139844-99ad-49a6-8c8d-581cd3610481",
+          "urn:b8139844-99ad-49a6-8c8d-581cd3610481",
+          "urn:b8139844-99ad-49a6-8c8d-581cd3610481"
         ]
       },
       {
-        "@id": "urn:cb2c6935-c344-43e3-8766-cf55331e5fdb",
+        "@id": "urn:c3d3a25b-0252-4059-a245-dda0d1a5e420",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:f5777f7f-afef-49f9-be4a-a93d2a957623",
+        "AssociatedWith": "urn:3e1a6330-6d27-41ed-b2d7-f50b8348f477",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:b61b8e8c-4da7-4360-aaac-1b949f19e376"
+          "urn:91ee27ee-63a7-4b92-8f1e-a6bc5af873cd"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:74badce5-1fae-46aa-b055-750279abb84b",
+        "@id": "urn:9b581ae8-7368-4411-84c6-4d66165bd5c4",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_clusterwise_fwe/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:a3e80646-9e6a-421f-9d5d-36a21303d503",
+        "@id": "urn:2ff88d43-bf8a-4d17-97fb-032d91ec1903",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_clusterwise_fwe/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:77eff1ab-01eb-4ea7-8085-3efbc9667ede",
+        "@id": "urn:4d350b62-1091-4725-af58-4f40d3f08a39",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:4d3e09b8-a6d1-4cae-ab6e-518c9140be14",
+        "@id": "urn:cb238dbf-75c3-47f0-a085-fd84a05307a3",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:52bc166d-26d7-4569-93df-4e11d920e06e",
+        "GeneratedBy": "urn:5a8f14ac-7b0f-4ce8-8fdb-9d518fdc4f58",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:bc261f1d-b44d-4663-8826-2438b4367d0b",
+        "@id": "urn:9524c744-6988-4d0c-a6c8-8553794c1251",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:52bc166d-26d7-4569-93df-4e11d920e06e"
+        "GeneratedBy": "urn:5a8f14ac-7b0f-4ce8-8fdb-9d518fdc4f58"
       },
       {
-        "@id": "urn:93b166eb-4469-4dae-9d65-435cb8462de2",
+        "@id": "urn:71da4817-5c97-4d51-ac51-760d380d635b",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:52bc166d-26d7-4569-93df-4e11d920e06e"
+        "GeneratedBy": "urn:5a8f14ac-7b0f-4ce8-8fdb-9d518fdc4f58"
       },
       {
-        "@id": "urn:c5dfced5-481c-431e-9aa4-58913f7adba2",
+        "@id": "urn:ab16f273-2c0a-4821-ba88-1636745d121a",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:52bc166d-26d7-4569-93df-4e11d920e06e"
+        "GeneratedBy": "urn:5a8f14ac-7b0f-4ce8-8fdb-9d518fdc4f58"
       },
       {
-        "@id": "urn:28adcfaf-736c-4b8b-8bc3-d265bf0eba90",
+        "@id": "urn:20ea2776-872a-45b1-a331-31916a8cedd1",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:312cb241-708c-4709-a23a-9dac9490ae33",
+        "@id": "urn:335ec760-8131-4706-84e5-ec26bcbb76aa",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:6fb6a185-0f0e-4cc2-a182-ea48fedca732"
+        "GeneratedBy": "urn:aa415b9b-bf93-417b-8277-a5c49bd95a27"
       },
       {
-        "@id": "urn:638257a8-0895-48d4-8016-cc60c84f7b3e",
+        "@id": "urn:61c386a1-698a-46a2-a770-18e5ec43fcf8",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:7798a257-63de-4a1e-9e79-f2c54807c99f",
+        "@id": "urn:47b36bbc-f1ff-4bbd-8c90-6f05275ec35f",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:87f188df-c23d-4aa0-bfb6-eb6dd111eab2",
+        "@id": "urn:30d22fd1-b991-44ff-a846-4cd67a2ceebf",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:c506f2c2-9750-4694-a22c-9a59dc47c6cd",
+        "GeneratedBy": "urn:fc26cdab-5a85-4c01-ab9a-7cbebf471a3e",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:4354a546-b446-40de-b1c1-b7b8dc8dff65",
+        "@id": "urn:4de0ea67-369a-452f-9771-14224cec49ca",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:c506f2c2-9750-4694-a22c-9a59dc47c6cd",
+        "GeneratedBy": "urn:fc26cdab-5a85-4c01-ab9a-7cbebf471a3e",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:638257a8-0895-48d4-8016-cc60c84f7b3e",
+        "@id": "urn:61c386a1-698a-46a2-a770-18e5ec43fcf8",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:5c12f4d7-c86c-4d81-8952-2716bd7cab63",
+        "@id": "urn:bd9ba12f-ca5a-4b94-b3ef-b1630faf29b2",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:69de28c5-0c0c-45ce-8afb-bd975bea590c",
+        "GeneratedBy": "urn:c8440980-089a-4d94-81a2-0e6b7bae9cee",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:6b5d0405-4cd3-4e91-b83e-54bfc4060735",
+        "@id": "urn:3140a577-2df8-4acd-aa3b-9982b5902b0b",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:6fd8cde4-416a-4eef-bb49-901f85a600f3",
+        "@id": "urn:bc5744d3-5449-453a-ae20-bbc6e990f4b4",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:06fc7b28-440a-443f-a1ac-d27d1cd48948",
+        "@id": "urn:e169e92d-af0e-44de-9e28-1903bc99ef94",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:19e29262-d365-463f-971e-ea6537b869f9",
+        "GeneratedBy": "urn:36a79a14-45cd-45c0-8d6d-ce8b33c7de70",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
       },
       {
-        "@id": "urn:50fe8d8d-769b-4640-8a9f-6063c666a718",
+        "@id": "urn:82e546a9-cc28-470f-b8c0-e34a95f11b29",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -333,7 +333,7 @@
         }
       },
       {
-        "@id": "urn:b4232f97-2855-4e32-bf87-c66ce2b5c029",
+        "@id": "urn:3749b253-8c1c-4ce0-9cca-7efa69b9d860",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -341,7 +341,7 @@
         }
       },
       {
-        "@id": "urn:aa535b62-3124-47ac-be27-a5c5b047ea68",
+        "@id": "urn:4029cf39-cfd0-4280-88db-02f762e96ce4",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -349,16 +349,16 @@
         }
       },
       {
-        "@id": "urn:5f462872-6e3d-45c2-9084-135b50b7d687",
+        "@id": "urn:395827c1-0fc3-4830-8d43-2eef435b48d5",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:0e752515-4b43-4951-829f-65da8aa40859",
+        "GeneratedBy": "urn:264a0ee7-47b6-4f2c-9bf1-933c6d9ad711",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:aa535b62-3124-47ac-be27-a5c5b047ea68",
+        "@id": "urn:4029cf39-cfd0-4280-88db-02f762e96ce4",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -366,16 +366,16 @@
         }
       },
       {
-        "@id": "urn:5f462872-6e3d-45c2-9084-135b50b7d687",
+        "@id": "urn:395827c1-0fc3-4830-8d43-2eef435b48d5",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:0e752515-4b43-4951-829f-65da8aa40859",
+        "GeneratedBy": "urn:264a0ee7-47b6-4f2c-9bf1-933c6d9ad711",
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@@ -383,7 +383,7 @@
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@@ -391,7 +391,7 @@
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@@ -399,7 +399,7 @@
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@@ -407,7 +407,7 @@
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@@ -423,7 +423,7 @@
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@@ -431,7 +431,7 @@
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@@ -439,97 +439,97 @@
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@@ -537,7 +537,7 @@
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@@ -545,7 +545,7 @@
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@@ -553,7 +553,7 @@
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@@ -561,7 +561,7 @@
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@@ -569,7 +569,7 @@
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@@ -577,7 +577,7 @@
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@@ -585,7 +585,7 @@
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@@ -593,7 +593,7 @@
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@@ -601,7 +601,7 @@
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@@ -609,61 +609,61 @@
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@@ -671,7 +671,7 @@
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@@ -679,7 +679,7 @@
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@@ -687,34 +687,34 @@
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@@ -722,7 +722,7 @@
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@@ -730,7 +730,7 @@
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@@ -738,7 +738,7 @@
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@@ -746,7 +746,7 @@
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@@ -754,7 +754,7 @@
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@@ -762,7 +762,7 @@
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@@ -770,7 +770,7 @@
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@@ -778,7 +778,7 @@
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@@ -786,7 +786,7 @@
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@@ -794,7 +794,7 @@
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@@ -802,7 +802,7 @@
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@@ -810,7 +810,7 @@
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@@ -818,133 +818,133 @@
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-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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-        "@id": "urn:15a73dc4-e916-465e-a7f7-1cdfe5c68626",
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-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
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         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:95cf52e4-3782-45ff-af60-88c40a20fd76",
+        "GeneratedBy": "urn:bb97fb22-0b0c-4c0a-b43e-9f3f90687556",
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         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
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       {
-        "@id": "urn:6a233baf-1b6c-47eb-9adc-255967269d82",
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-        "GeneratedBy": "urn:f15d3f76-7e2d-4e64-a7a0-f05a7aabee92",
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+        "@id": "urn:426cdc9a-3cb6-4c52-933f-a4883a051d40",
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-        "GeneratedBy": "urn:f15d3f76-7e2d-4e64-a7a0-f05a7aabee92",
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+        "@id": "urn:9e8e49ef-ce01-4f89-a883-bfdfc3e48d86",
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         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:f15d3f76-7e2d-4e64-a7a0-f05a7aabee92",
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@@ -987,10 +987,10 @@
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-        "GeneratedBy": "urn:cb2c6935-c344-43e3-8766-cf55331e5fdb",
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diff --git a/examples/from_parsers/afni/afni_thr_clustunck10_proc.jsonld b/examples/from_parsers/afni/afni_thr_clustunck10_proc.jsonld
index f6245e1d3..ed6e595f6 100644
--- a/examples/from_parsers/afni/afni_thr_clustunck10_proc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_clustunck10_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "@id": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "RRID": "RRID:SCR_007037",
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@@ -13,569 +13,569 @@
     ],
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-        "@id": "urn:62eb0889-4f7f-4b45-afa7-be2f445b4d65",
+        "@id": "urn:a78bed8b-8b1d-4170-86f6-a0597cea4fd9",
         "Label": "Make directory",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
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         "Parameters": {},
         "Used": []
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       {
-        "@id": "urn:8b93507d-7327-40dd-9114-b5eb64c72a06",
+        "@id": "urn:2b558372-4a0d-42ac-8b26-6fbc2315e380",
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-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
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+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
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         "Parameters": {},
         "Used": [
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-          "urn:788757af-9a31-406d-90d4-025832d851dd"
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         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:d7134c48-220f-433f-b3b7-c18b5b63915d"
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+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
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         "Used": [
-          "urn:2de5969b-8b86-464e-9441-cdbc784fffcf"
+          "urn:53e2ece8-f99e-4cd5-a1c8-2b01c724d863"
         ]
       },
       {
-        "@id": "urn:a14ca774-9757-41c7-8136-05b29c519c7a",
+        "@id": "urn:ec47503c-521d-422e-acf3-853d8bc6eef8",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:d7134c48-220f-433f-b3b7-c18b5b63915d"
+          "urn:cd4eb98c-0ee8-4e24-bcf5-30ca3bb9157b"
         ]
       },
       {
-        "@id": "urn:9150d3b0-50c1-4d8f-95cd-c2c5c926bfd8",
+        "@id": "urn:65ca8ac9-e460-4bb4-b988-c0e8b640d0f6",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:71045567-d0c3-44ba-bcaf-76d1cbcbf76c",
-          "urn:73c8e3b1-d155-4190-ac0c-a7d60aab2841"
+          "urn:21f0889a-2884-47bb-96d9-844dbb3cacb2",
+          "urn:8429cb3a-f417-48a2-87c8-7eef3f8cecea"
         ]
       },
       {
-        "@id": "urn:7e3356b6-ed4f-4827-9d05-1603c4f6e03d",
+        "@id": "urn:0c3e5b35-2012-4f1e-8082-d52f69234d96",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:e83f84e5-d148-4623-98a6-51db60ece79a",
-          "urn:7453b882-53de-488b-b771-4e68323e3bed"
+          "urn:7dd9eb6e-2c26-4aef-bbdd-27155171191f",
+          "urn:eba70185-e536-493c-9a67-e36a17e85583"
         ]
       },
       {
-        "@id": "urn:41f203fe-5895-4259-98d9-088f7d0a4b97",
+        "@id": "urn:6ef2fa60-155f-45b3-8ea3-cfcd906b43b9",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:aeefcc15-f430-486c-b626-64f77030f168"
+          "urn:b9fa590e-c9a7-4755-baaf-fdfbd9adbf5b"
         ]
       },
       {
-        "@id": "urn:fa4a5008-018c-454b-9399-c24a2febe47b",
+        "@id": "urn:0dd0e641-9d9b-44e8-b602-7a0ea3ba1b56",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:e373bebe-5f90-472c-9c49-28fad5288cea"
+          "urn:8322775b-62fc-4344-b93d-fa8dad3d9fe0"
         ]
       },
       {
-        "@id": "urn:99167c56-bdb8-4082-ad8a-6393fa210af1",
+        "@id": "urn:48f9cdad-094a-41e9-bacd-4d5e0a8d9639",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:e373bebe-5f90-472c-9c49-28fad5288cea"
+          "urn:8322775b-62fc-4344-b93d-fa8dad3d9fe0"
         ]
       },
       {
-        "@id": "urn:35bf05e6-7c83-4b09-be5d-a4347de635ad",
+        "@id": "urn:766cf6f0-051b-45c6-8451-c590708c3122",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:aeefcc15-f430-486c-b626-64f77030f168"
+          "urn:b9fa590e-c9a7-4755-baaf-fdfbd9adbf5b"
         ]
       },
       {
-        "@id": "urn:a3657831-ccb1-47ac-9367-4fc7c282997f",
+        "@id": "urn:b801e693-611b-478e-810f-18890efe7473",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:e8706f80-aa36-4dbc-82ba-5ffa48753099",
-          "urn:e373bebe-5f90-472c-9c49-28fad5288cea",
-          "urn:a1c61c00-791a-4ea7-8b70-db69ded7d388"
+          "urn:8322775b-62fc-4344-b93d-fa8dad3d9fe0",
+          "urn:e72dcc3e-adcd-4dbe-8641-3498938eeada",
+          "urn:f972fd76-8fb6-4a2d-a066-35b0affd6195"
         ]
       },
       {
-        "@id": "urn:28f7601c-1797-410a-95cb-6ff6721c0fda",
+        "@id": "urn:de54b09c-420b-496f-95e9-77180f2ea2a3",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:e8706f80-aa36-4dbc-82ba-5ffa48753099",
-          "urn:75ec118a-dd30-4341-9849-6145a99eb6a3",
-          "urn:a1c61c00-791a-4ea7-8b70-db69ded7d388"
+          "urn:b89b4e42-4d72-4ccf-aec4-9ac21339fc1c",
+          "urn:e72dcc3e-adcd-4dbe-8641-3498938eeada",
+          "urn:f972fd76-8fb6-4a2d-a066-35b0affd6195"
         ]
       },
       {
-        "@id": "urn:0b52c038-9bba-4d02-bc7c-242fedfda788",
+        "@id": "urn:194448dc-d2cd-43cc-ad82-8054b1ba2df5",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:9e8e49ef-ce01-4f89-a883-bfdfc3e48d86"
+          "urn:30b89792-f8a9-4f81-8734-f482347fb96d"
         ]
       },
       {
-        "@id": "urn:91ee27ee-63a7-4b92-8f1e-a6bc5af873cd",
+        "@id": "urn:957cf01d-7c97-4b54-8c82-b2e3330f5935",
         "Label": "cat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:205e6360-bdd0-49bb-9245-65cd43c5b03b"
+          "urn:2925e014-5c3f-4f83-bf81-5437b7478cba"
         ]
       },
       {
-        "@id": "urn:5a8f14ac-7b0f-4ce8-8fdb-9d518fdc4f58",
+        "@id": "urn:8692a4e7-d9de-4618-85f7-76adfee80306",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:aa415b9b-bf93-417b-8277-a5c49bd95a27"
+          "urn:238ee357-9664-4341-89fe-87da449145ba"
         ]
       },
       {
-        "@id": "urn:c8440980-089a-4d94-81a2-0e6b7bae9cee",
+        "@id": "urn:375bd401-f59d-41f9-9554-3e3844f1e172",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:36a79a14-45cd-45c0-8d6d-ce8b33c7de70",
-          "urn:264a0ee7-47b6-4f2c-9bf1-933c6d9ad711"
+          "urn:64f3a5a9-a8b3-4de3-9b4c-89e46e6bdf39",
+          "urn:81320ff0-3c04-46f5-82a0-2096247086bc"
         ]
       },
       {
-        "@id": "urn:bbde888e-4902-42c0-994b-a180d5edff4b",
+        "@id": "urn:7d12b8f2-8f4b-4cec-b9f5-320f51af16ef",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:e8706f80-aa36-4dbc-82ba-5ffa48753099"
+          "urn:f972fd76-8fb6-4a2d-a066-35b0affd6195"
         ]
       },
       {
-        "@id": "urn:bb97fb22-0b0c-4c0a-b43e-9f3f90687556",
+        "@id": "urn:2b669e28-a0cf-4fca-b868-ad8e89b90e48",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:6c82a5b7-295e-4bf5-8ec9-8a86e1157907"
+          "urn:4f6fe1ef-7874-449b-85a1-edc1ce3063db"
         ]
       },
       {
-        "@id": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
+        "@id": "urn:13b80b23-36fb-4b06-ba8e-d2739470fb8a",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:af37ed47-62d0-4033-aaf3-b1a9bff13185",
-          "urn:ed039280-27f5-4133-b5da-56c4aa37acde"
+          "urn:7cdfe3ab-fac6-4fc5-88cf-6f8b3dfcd272",
+          "urn:ef75cf7f-49b6-459f-92ee-a356d4649a17"
         ]
       },
       {
-        "@id": "urn:0573bcfc-c7db-41bb-9a08-3709f030ecb3",
+        "@id": "urn:c3e40dc5-8e40-4a7e-b0f2-415dd8b846ef",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:55cac575-b451-483d-89fd-26175de93e13"
+          "urn:457e2c3b-290a-4d49-b677-77424fc164e0"
         ]
       },
       {
-        "@id": "urn:56952d52-4563-43f3-b14e-5428f5aaef2d",
+        "@id": "urn:218ffa82-8cd0-4624-9995-7d9b9da621f0",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:a74a4155-f6eb-4f14-89cd-6c9af840b2c7",
+        "@id": "urn:02fa4dac-b13e-47ef-8390-9b5f37135c15",
         "Label": "3dresample",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:e8706f80-aa36-4dbc-82ba-5ffa48753099",
-          "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc"
+          "urn:b1c281e2-c739-46f8-a194-514e241747b2",
+          "urn:f972fd76-8fb6-4a2d-a066-35b0affd6195"
         ]
       },
       {
-        "@id": "urn:84f56de4-3465-4cf5-9217-cdfaa5a8257e",
+        "@id": "urn:60d56e93-faf4-4101-be8b-18f457793b62",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:eae1ad4d-af8a-4315-9449-a5faf98f38ef"
+          "urn:1f988b1a-d24f-425f-a9ae-e63df25e13c1"
         ]
       },
       {
-        "@id": "urn:62de0566-6cb1-4a25-bee0-6b7ed491b2af",
+        "@id": "urn:07715c6d-a301-48f9-b7e1-a44f5c4aec34",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:681749e2-d210-4fe2-bea3-c7f02908594a",
-          "urn:165a1602-9cae-4311-84b5-3834366b9b38"
+          "urn:32257d53-8603-40db-b02f-6002a5d6ee1a",
+          "urn:84089e16-6209-4d72-ba0a-c9003f234966"
         ]
       },
       {
-        "@id": "urn:b4e36be6-aa1d-4ef3-a1ed-6ae35a8a0fdc",
+        "@id": "urn:75b192c7-da14-488c-93e9-6b6390ee73a9",
         "Label": "3ddot",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:681749e2-d210-4fe2-bea3-c7f02908594a",
-          "urn:165a1602-9cae-4311-84b5-3834366b9b38"
+          "urn:32257d53-8603-40db-b02f-6002a5d6ee1a",
+          "urn:84089e16-6209-4d72-ba0a-c9003f234966"
         ]
       },
       {
-        "@id": "urn:a0d9e6c4-68dd-48b7-a051-c3a2b8801090",
+        "@id": "urn:758476e6-7d68-4c13-968c-da2ed9657bd8",
         "Label": "3dresample",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:4de6638c-23f0-4324-bc91-5f022edec878",
-          "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc"
+          "urn:0b1ddf27-54b0-4851-8e40-50f09b403ec4",
+          "urn:b1c281e2-c739-46f8-a194-514e241747b2"
         ]
       },
       {
-        "@id": "urn:518cbb99-6802-4c2b-bdb1-a9271dc218c1",
+        "@id": "urn:aa3da46b-70ce-43e9-9884-20dfe3b086b0",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:fa7c6077-b312-4c30-bada-86a87dfaf004"
+          "urn:38fb1c54-00fb-4ac6-a9dc-26c81c1cb409"
         ]
       },
       {
-        "@id": "urn:f5cd9e8f-859f-4fc7-8132-9508cb8d7144",
+        "@id": "urn:4f135819-17e3-44e5-bf60-cfa7e579b316",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:55cac575-b451-483d-89fd-26175de93e13"
+          "urn:457e2c3b-290a-4d49-b677-77424fc164e0"
         ]
       },
       {
-        "@id": "urn:12a489a2-e5c4-41fd-972b-12e91f20f6af",
+        "@id": "urn:0960d74a-45cf-420e-b77a-4d7caf1ea1c6",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
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-          "urn:071a36b0-128b-4e4e-9b09-5d4bf6f63903",
-          "urn:264a0ee7-47b6-4f2c-9bf1-933c6d9ad711"
+          "urn:3dfd4a56-f366-4bd7-b140-c5252318e0cb",
+          "urn:457e2c3b-290a-4d49-b677-77424fc164e0",
+          "urn:81320ff0-3c04-46f5-82a0-2096247086bc"
         ]
       },
       {
-        "@id": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
+        "@id": "urn:b3730248-9b2b-49ed-9dee-45be3b2efa5d",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:98ce23d2-9cc2-4df9-a29a-82d7aa48e6ae"
+          "urn:1ac2c87f-eeb1-4e78-95d3-ea9b816d6ba5"
         ]
       },
       {
-        "@id": "urn:447b3e40-4c33-4a46-8121-5c9a3af866aa",
+        "@id": "urn:7b6220b4-8027-423d-a314-287932253b51",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
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+          "urn:1ac2c87f-eeb1-4e78-95d3-ea9b816d6ba5"
         ]
       },
       {
-        "@id": "urn:c00eeda2-be42-487f-b6e2-28515f578f3e",
+        "@id": "urn:8a659019-84c1-4c8e-9f06-1f02d1b401dd",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:98ce23d2-9cc2-4df9-a29a-82d7aa48e6ae"
+          "urn:1ac2c87f-eeb1-4e78-95d3-ea9b816d6ba5"
         ]
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       {
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+        "@id": "urn:b5e9050f-4d3b-47f4-901a-7063ed55253f",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:7772020d-ac05-4d0e-aa6b-ba7c6516fb74"
+          "urn:4c609c7f-beba-4c9c-99c9-cb6070983ebd"
         ]
       },
       {
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+        "@id": "urn:52b454bd-7e81-4ee7-ac1e-efe736cdd46c",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:f55c118c-56ab-4383-a123-3704c2418a98"
+          "urn:54d4205c-2755-4b93-8703-c1d55bea28be"
         ]
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       {
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         "Label": "3dTcat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:7772020d-ac05-4d0e-aa6b-ba7c6516fb74"
+          "urn:4c609c7f-beba-4c9c-99c9-cb6070983ebd"
         ]
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       {
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:886a634a-92ae-4b6a-a202-50de6c793825"
+          "urn:530372d1-1692-44c6-8880-08936c1e3afc"
         ]
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       {
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:65b22365-2211-4d46-bfc4-975be5c60659"
+          "urn:81eb387a-a9f4-404a-89ac-8eb8bd0c328d"
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+        "@id": "urn:6ff085a4-dd4b-413a-9701-e9ae6a37032f",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
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-          "urn:9d0bc8f1-0e14-4d65-bbe5-70599bfa3f9b",
-          "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc"
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         "Label": "3dTnorm",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
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+          "urn:51ee2018-45e8-49ce-a6ac-8202b01a4902"
         ]
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+        "@id": "urn:ef1d1588-ae65-4d09-9c2f-4e241eed532c",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
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+        "@id": "urn:f9ff08c4-87f3-4355-b509-a30ad6ac0bb7",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
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+          "urn:7f98f463-6009-4719-8115-5e8ed110f410"
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         "Label": "3dcalc",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
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-          "urn:c82e7fa3-80eb-4169-978d-93ec72026c55"
+          "urn:87a19083-35ef-4e69-bcc2-a414ce65738f",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
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+          "urn:a4052ff6-ac0e-4709-8ccf-096142900064"
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         "Label": "1dcat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:c11a6fcf-a07d-4398-a82e-a3869ba399d2"
+          "urn:d6806031-87b7-40be-b276-bf0ebc9c7440"
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       {
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         "Label": "1dcat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:2db82d0b-3360-4127-ad60-d9505fc28fe6"
+          "urn:800cb0d4-2427-4684-a00f-3cb9d52a9925"
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:5b90ef67-d464-423c-9769-46fed7afde85"
+          "urn:6506f02f-3be9-4a1a-af00-dec6938acd6f"
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       {
-        "@id": "urn:72a2adcf-06bd-47a9-82ed-2f7be937388c",
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         "Label": "1dcat",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:5b90ef67-d464-423c-9769-46fed7afde85"
+          "urn:6506f02f-3be9-4a1a-af00-dec6938acd6f"
         ]
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       {
-        "@id": "urn:5b326d81-3d0a-4c1f-a2c2-9ef41725148b",
+        "@id": "urn:70d45a51-a443-48f7-82c8-3542f0071288",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc"
+          "urn:b1c281e2-c739-46f8-a194-514e241747b2"
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         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc"
+          "urn:b1c281e2-c739-46f8-a194-514e241747b2"
         ]
       },
       {
-        "@id": "urn:7d12bc74-fa30-4adf-a5b2-2bb2ad07d322",
+        "@id": "urn:b08e3d70-dd9a-40fe-b019-685761dbc4b9",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc"
+          "urn:b1c281e2-c739-46f8-a194-514e241747b2"
         ]
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       {
-        "@id": "urn:91102b13-0b47-465e-afe1-1c9b13f9ea6e",
+        "@id": "urn:53016baa-c6e5-4905-972c-da0a4f944e2c",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:18b7f28d-5051-46cf-b15f-3e50099a252f"
+          "urn:97cd560d-ae4f-434c-a666-628134b605a4"
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       {
-        "@id": "urn:e149b9d7-48c5-49ff-944c-c8358c8c58f6",
+        "@id": "urn:1b2b3cc3-b38b-4b56-9498-7aea3ffe98f9",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:798f3557-326c-4903-9e80-4880b5cd5bfc",
+        "AssociatedWith": "urn:b91f86cb-9b9c-4e19-b29b-b444ace62d1b",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
           "-mot_limit": "0.3",
@@ -586,22 +586,22 @@
     ],
     "Entities": [
       {
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+        "@id": "urn:89f67975-ca98-45c5-9a5c-7a8259167d49",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:62eb0889-4f7f-4b45-afa7-be2f445b4d65",
+        "GeneratedBy": "urn:a78bed8b-8b1d-4170-86f6-a0597cea4fd9",
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+        "@id": "urn:ea12cbb8-ae5f-4a2e-b17f-47c484ceeaaa",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:8b93507d-7327-40dd-9114-b5eb64c72a06"
+        "GeneratedBy": "urn:2b558372-4a0d-42ac-8b26-6fbc2315e380"
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@@ -609,7 +609,7 @@
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@@ -617,13 +617,13 @@
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@@ -631,13 +631,13 @@
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@@ -645,13 +645,13 @@
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@@ -659,16 +659,16 @@
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@@ -676,25 +676,25 @@
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@@ -702,7 +702,7 @@
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@@ -710,16 +710,16 @@
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@@ -727,7 +727,7 @@
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@@ -735,7 +735,7 @@
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@@ -743,16 +743,16 @@
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@@ -760,34 +760,34 @@
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@@ -795,16 +795,16 @@
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@@ -812,16 +812,16 @@
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@@ -829,16 +829,16 @@
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@@ -846,16 +846,16 @@
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@@ -863,16 +863,16 @@
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@@ -880,7 +880,7 @@
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@@ -888,34 +888,34 @@
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@@ -923,7 +923,7 @@
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@@ -931,7 +931,7 @@
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@@ -939,25 +939,25 @@
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-        "@id": "urn:fe9f2e68-5450-4466-b842-ccc9dd39f6f7",
+        "@id": "urn:9887c94f-91b2-4240-a36a-eadb5aa3c924",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:aec640ed-c59f-49ed-8e7c-42a5ac214bf9",
+        "GeneratedBy": "urn:14de7aef-a2bf-4a1e-8c16-47fb34f4d67c",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:61509192-5cb3-441a-8c1d-ad52d092302a",
+        "@id": "urn:8cf5d2ac-cc2a-44e7-8eb2-c32e0dbb77df",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:7d12bc74-fa30-4adf-a5b2-2bb2ad07d322",
+        "GeneratedBy": "urn:b08e3d70-dd9a-40fe-b019-685761dbc4b9",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:18b7f28d-5051-46cf-b15f-3e50099a252f",
+        "@id": "urn:97cd560d-ae4f-434c-a666-628134b605a4",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
         }
       },
       {
-        "@id": "urn:8ae31d5e-a3ad-42bd-ad51-5124acc6a71f",
+        "@id": "urn:933a06df-d189-4d77-8890-8ccf53fd1c0f",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:e149b9d7-48c5-49ff-944c-c8358c8c58f6",
+        "GeneratedBy": "urn:1b2b3cc3-b38b-4b56-9498-7aea3ffe98f9",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_thr_clustunck10_proc_bloc.jsonld b/examples/from_parsers/afni/afni_thr_clustunck10_proc_bloc.jsonld
index 1ec31943e..00184a079 100644
--- a/examples/from_parsers/afni/afni_thr_clustunck10_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_clustunck10_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "@id": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:63c5707b-1fa7-4c34-9063-481dde955061",
+        "@id": "urn:a527361f-8681-462e-9c4f-50044857e218",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_cluster_k10/tone_counting_onset_times.txt ./afni_cluster_k10/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:c7594a11-495b-4a28-a309-548106b04b0e",
-          "urn:a3e61de6-6e73-40e4-a5ba-7044349cfb1a",
-          "urn:50f487c5-427f-4d63-9481-6d9a6aec2021"
+          "urn:1b6c722e-cdaa-4c88-b3a6-87c65a37554a",
+          "urn:c52ab986-0721-4976-918f-518822d8df32",
+          "urn:296dfd73-eb2c-4334-b65c-76914bdce554"
         ]
       },
       {
-        "@id": "urn:6f063688-2891-4c48-a796-36be5fde8862",
+        "@id": "urn:438c9f67-4c05-49df-bc1d-5321f4d5e6d4",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:9220cdcc-449f-4185-b7fd-f95b6f48368b"
+          "urn:5092984f-5d20-4ec0-817f-5992ffdcb2c9"
         ]
       },
       {
-        "@id": "urn:e0154622-ff40-45c9-95b0-d152011a123e",
+        "@id": "urn:7c57d1e6-17d3-4065-b67f-a0b772510c9c",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:7374f398-be8e-4534-9ce6-61d41763e8e6",
-          "urn:f39e533d-15dd-40d0-b151-cf39c441c721"
+          "urn:c87a3172-8501-4620-87eb-5dfa686b2f8b",
+          "urn:507a8da5-9f2f-4616-ad3e-679eaad090d9"
         ]
       },
       {
-        "@id": "urn:bdcad4b4-738c-438d-bf8f-a3afa9085d98",
+        "@id": "urn:1ab57373-008c-4185-a4a0-b4055817c834",
         "Label": "tshift",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:7374f398-be8e-4534-9ce6-61d41763e8e6"
+          "urn:c87a3172-8501-4620-87eb-5dfa686b2f8b"
         ]
       },
       {
-        "@id": "urn:5718e82a-6a92-4d95-94ea-33eedbc07817",
+        "@id": "urn:ee7e472a-0fd8-46e5-84aa-d9c56df36337",
         "Label": "align",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:7409e6c4-7e3c-41fc-8ade-752542f081ae",
-          "urn:7dedc9bb-8c86-4990-a6b8-648da3100168"
+          "urn:66e2b8c9-38e4-419a-bc3a-b1730de5c887",
+          "urn:f565cf28-54ed-4c08-ad1c-4c86fbd4209a"
         ]
       },
       {
-        "@id": "urn:6a964585-80c4-4fd6-a4b9-3b69782a57cc",
+        "@id": "urn:487f22ab-a209-405c-85b8-4b657cbbcb10",
         "Label": "tlrc",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:5387229e-d088-4ba4-884e-34bc3ff43df0",
-          "urn:cdecbeaf-18f4-4a48-8375-8486e681054a",
-          "urn:453f2339-e213-4b5e-ab94-4573425a181a"
+          "urn:8e7d0070-8079-4c57-aede-ac31ab3d2c61",
+          "urn:d51f009a-c70a-46d4-b88f-f68e1961fbdf",
+          "urn:6be892d4-a8b7-43cc-878f-266da06eca50"
         ]
       },
       {
-        "@id": "urn:13b5dfe8-b7ac-4e01-a102-0ed6a57ef661",
+        "@id": "urn:58190496-d361-4a3b-b643-956ca8ba66ac",
         "Label": "volreg",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:8350322f-597f-4267-ba24-edba4a2ae54e",
-          "urn:8350322f-597f-4267-ba24-edba4a2ae54e",
-          "urn:453f2339-e213-4b5e-ab94-4573425a181a",
-          "urn:753d9758-36e4-406a-b40f-4d8ec0e5d9dc",
-          "urn:8350322f-597f-4267-ba24-edba4a2ae54e",
-          "urn:753d9758-36e4-406a-b40f-4d8ec0e5d9dc",
-          "urn:f8993cd1-0f00-4bd3-9c0b-b93c14095ac4",
-          "urn:e8fc634a-717b-4e72-a852-cd4cef0e4447",
-          "urn:c0aa7d2f-c91b-4291-987b-f3293bd8bc35",
-          "urn:11a104fa-e66b-41e8-b818-75667e809a71",
-          "urn:27c0b428-9b3c-4279-981d-eccfe31cfcfa",
-          "urn:6cc2dc97-7d0f-4575-aae6-5ea89fc778b7",
-          "urn:753d9758-36e4-406a-b40f-4d8ec0e5d9dc",
-          "urn:171aa06b-6403-4488-adb4-7f3e89d9caf0"
+          "urn:21ac6c9a-3333-4923-9186-c9e5020afcb9",
+          "urn:21ac6c9a-3333-4923-9186-c9e5020afcb9",
+          "urn:6be892d4-a8b7-43cc-878f-266da06eca50",
+          "urn:21ac6c9a-3333-4923-9186-c9e5020afcb9",
+          "urn:e16d69a9-cb22-4fa6-93e3-3f382186da83",
+          "urn:63f6635e-d42e-4729-93ce-219e08306297",
+          "urn:e16d69a9-cb22-4fa6-93e3-3f382186da83",
+          "urn:6ca79a28-ccba-4ed7-9c3e-b723a3384c43",
+          "urn:44e6ae47-f94d-4f63-b751-deb9963deff6",
+          "urn:27316f60-9bb2-44a4-92e3-10550fd887e9",
+          "urn:a2ad449d-4882-4dec-90e8-1a9f300f1dbd",
+          "urn:fbcc0e0a-4131-487e-9e7e-baf9fee5e1a3",
+          "urn:e16d69a9-cb22-4fa6-93e3-3f382186da83",
+          "urn:e69f4098-08d3-44bb-a7eb-cae49508103f"
         ]
       },
       {
-        "@id": "urn:1e702c29-b4e1-41fa-bc95-23dfe6921348",
+        "@id": "urn:c7c86089-eaa4-4a18-8530-49a201b46d44",
         "Label": "blur",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:0fe9750e-e253-4ce3-9501-6f9b5be5612c",
-          "urn:3e2d0b3c-a9d8-459a-a5b6-1c442573c6a9"
+          "urn:a9cb952e-31b9-43a4-817f-3dc1683dc1e8",
+          "urn:bf214b29-acb3-4c15-bf07-61fae1e0c4bc"
         ]
       },
       {
-        "@id": "urn:91e1e931-b451-49d1-9166-6fbc67b1335f",
+        "@id": "urn:c2d998a1-f944-487f-852a-87a2d18c487e",
         "Label": "mask",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:6a4f28e4-2599-49cd-a360-89709dc67815",
-          "urn:753d9758-36e4-406a-b40f-4d8ec0e5d9dc",
-          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
-          "urn:407a0dcc-199e-43d1-820c-6c4488d6b491",
-          "urn:7c1874c9-f93c-4559-9f77-77113ffc2a9f",
-          "urn:f1704fe7-f6ea-4663-9608-648f52503c52",
-          "urn:7c1874c9-f93c-4559-9f77-77113ffc2a9f",
-          "urn:f1704fe7-f6ea-4663-9608-648f52503c52",
-          "urn:35384b90-2956-47b9-856a-48728b487eb5",
-          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
-          "urn:bfda1d08-51e2-4e86-b81e-30ab68c80201"
+          "urn:f7b23cf4-c8f9-4b58-9b0e-e0e62ffbccb7",
+          "urn:cab74723-0ee9-4288-958e-063720df47d4",
+          "urn:e16d69a9-cb22-4fa6-93e3-3f382186da83",
+          "urn:56cebd72-711b-493a-8abc-9f859a81e659",
+          "urn:08a36ae1-a3be-494d-94c5-20e993aafadc",
+          "urn:1988764e-c779-4ef3-84d9-06844656fb70",
+          "urn:08a36ae1-a3be-494d-94c5-20e993aafadc",
+          "urn:1988764e-c779-4ef3-84d9-06844656fb70",
+          "urn:388ac5f3-9da0-4574-8860-bc4c4ef8e2cf",
+          "urn:cab74723-0ee9-4288-958e-063720df47d4",
+          "urn:13e5b321-4fa2-4564-981e-90497af02801"
         ]
       },
       {
-        "@id": "urn:f68962ac-b1bf-4fc8-9194-ee95c76a54ac",
+        "@id": "urn:2b9183d0-77d0-46b0-bf37-9194a53c9e30",
         "Label": "scale",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:6a4f28e4-2599-49cd-a360-89709dc67815",
-          "urn:6a4f28e4-2599-49cd-a360-89709dc67815",
-          "urn:139db712-0505-4bae-9add-75f0bfeed399",
-          "urn:6cc2dc97-7d0f-4575-aae6-5ea89fc778b7"
+          "urn:f7b23cf4-c8f9-4b58-9b0e-e0e62ffbccb7",
+          "urn:8cc05d68-b8ed-4279-a47d-6f0555931cf8",
+          "urn:f7b23cf4-c8f9-4b58-9b0e-e0e62ffbccb7",
+          "urn:fbcc0e0a-4131-487e-9e7e-baf9fee5e1a3"
         ]
       },
       {
-        "@id": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "@id": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
         "Label": "regress",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:7c06248d-d806-4e4e-944e-78d2a6556e52",
-          "urn:7c06248d-d806-4e4e-944e-78d2a6556e52",
-          "urn:7c06248d-d806-4e4e-944e-78d2a6556e52",
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-          "urn:9bb3b3c7-d9e7-4990-b618-54e62cdb8449",
-          "urn:ddfcf1f2-5254-4261-bbd2-ef03ed5bb814",
-          "urn:ed406cf4-84e0-44ce-b9e3-96c8715b055b",
-          "urn:7564c2c2-a931-4c72-a838-570247b2b213",
-          "urn:7564c2c2-a931-4c72-a838-570247b2b213"
+          "urn:29be423e-dd92-4371-8292-a47c133dbab8",
+          "urn:29be423e-dd92-4371-8292-a47c133dbab8",
+          "urn:29be423e-dd92-4371-8292-a47c133dbab8",
+          "urn:5776b9bf-181e-425a-94de-eb6c4a20ceb8",
+          "urn:5776b9bf-181e-425a-94de-eb6c4a20ceb8",
+          "urn:d3323105-aba7-4f17-9e0a-310b423fe1a1",
+          "urn:f2fe7a50-a9a2-408f-83cb-962f5872202b",
+          "urn:3c794f07-df83-4255-8909-cab774f309e8",
+          "urn:9384bc8b-dc88-4c73-a425-a2a106d70b8a",
+          "urn:cab74723-0ee9-4288-958e-063720df47d4",
+          "urn:3a2fb18e-9936-4c27-bc14-c49eaf2730cd",
+          "urn:4bc4b59a-df17-4f71-9f87-a8164f2587fc",
+          "urn:a3d059b2-541c-4a68-800c-cfca807651ea",
+          "urn:c290da90-9494-48c5-822f-947f1168f274",
+          "urn:fe0dab03-b97b-4c4e-920c-ec29d36e0707",
+          "urn:63af4367-07e3-4e07-bc18-42a97c68ef60",
+          "urn:19c0d5bd-aa50-40b0-9902-bd71567b0b67",
+          "urn:19c0d5bd-aa50-40b0-9902-bd71567b0b67"
         ]
       },
       {
-        "@id": "urn:ea5183ba-9f9d-4703-8055-ad9ac1aaf1f0",
+        "@id": "urn:f9926a23-da1b-4676-8f18-6402e78b4e66",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
-          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
-          "urn:5538393a-0e9e-4399-a092-fabfef6b5282"
+          "urn:cab74723-0ee9-4288-958e-063720df47d4",
+          "urn:cab74723-0ee9-4288-958e-063720df47d4",
+          "urn:cab74723-0ee9-4288-958e-063720df47d4"
         ]
       },
       {
-        "@id": "urn:b6be9a53-13e4-4fdc-a78f-6e0ba8ae41d2",
+        "@id": "urn:90006fda-2974-4e85-8721-5d30689854db",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:e71700d1-f16b-43b9-99b9-fbd0299f2534",
+        "AssociatedWith": "urn:2d79bddc-749b-4047-b6f1-776acfbbb682",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:42d99646-29ac-48f5-a5c0-ecc93e09dd52"
+          "urn:d4ae7eed-f7a0-4b2c-8e95-497986952c6e"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:c7594a11-495b-4a28-a309-548106b04b0e",
+        "@id": "urn:c52ab986-0721-4976-918f-518822d8df32",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_cluster_k10/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:a3e61de6-6e73-40e4-a5ba-7044349cfb1a",
+        "@id": "urn:1b6c722e-cdaa-4c88-b3a6-87c65a37554a",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_cluster_k10/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:50f487c5-427f-4d63-9481-6d9a6aec2021",
+        "@id": "urn:296dfd73-eb2c-4334-b65c-76914bdce554",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:ee2408cc-c449-4e10-93d3-7c11e0a58e0f",
+        "@id": "urn:40f105b4-d402-4298-9c9c-4c6535c9422f",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:63c5707b-1fa7-4c34-9063-481dde955061",
+        "GeneratedBy": "urn:a527361f-8681-462e-9c4f-50044857e218",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
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       {
-        "@id": "urn:3508e8e8-f0c1-4ffd-8dfe-464026c65a88",
+        "@id": "urn:761d8304-1910-4af4-9bcc-748950048e05",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:63c5707b-1fa7-4c34-9063-481dde955061"
+        "GeneratedBy": "urn:a527361f-8681-462e-9c4f-50044857e218"
       },
       {
-        "@id": "urn:9c0ba698-c0c5-4305-977c-d9e1c1862185",
+        "@id": "urn:ae9dab48-a818-43a0-be2b-28a9a4d076da",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:63c5707b-1fa7-4c34-9063-481dde955061"
+        "GeneratedBy": "urn:a527361f-8681-462e-9c4f-50044857e218"
       },
       {
-        "@id": "urn:b7120cae-1b38-4812-9aa4-8123b3e36f0c",
+        "@id": "urn:e06d0fe1-fc81-4ef3-b839-41a4a2c1ff71",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:63c5707b-1fa7-4c34-9063-481dde955061"
+        "GeneratedBy": "urn:a527361f-8681-462e-9c4f-50044857e218"
       },
       {
-        "@id": "urn:9220cdcc-449f-4185-b7fd-f95b6f48368b",
+        "@id": "urn:5092984f-5d20-4ec0-817f-5992ffdcb2c9",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:64faf72a-c81a-4277-ad7b-95ef6daef451",
+        "@id": "urn:4b785bbf-7f93-4aa1-a136-19df513b097d",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:6f063688-2891-4c48-a796-36be5fde8862"
+        "GeneratedBy": "urn:438c9f67-4c05-49df-bc1d-5321f4d5e6d4"
       },
       {
-        "@id": "urn:7374f398-be8e-4534-9ce6-61d41763e8e6",
+        "@id": "urn:c87a3172-8501-4620-87eb-5dfa686b2f8b",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:f39e533d-15dd-40d0-b151-cf39c441c721",
+        "@id": "urn:507a8da5-9f2f-4616-ad3e-679eaad090d9",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:9c6d0647-4ef8-47d7-9883-9cc78c976689",
+        "@id": "urn:599f48e7-16cb-41c8-9af7-3e9523a18a89",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:e0154622-ff40-45c9-95b0-d152011a123e",
+        "GeneratedBy": "urn:7c57d1e6-17d3-4065-b67f-a0b772510c9c",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:b0d9a9c0-05e2-46e5-aecc-eb834e7acba1",
+        "@id": "urn:183130da-2404-4f2f-ab61-76892ddfb75c",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:e0154622-ff40-45c9-95b0-d152011a123e",
+        "GeneratedBy": "urn:7c57d1e6-17d3-4065-b67f-a0b772510c9c",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:7374f398-be8e-4534-9ce6-61d41763e8e6",
+        "@id": "urn:c87a3172-8501-4620-87eb-5dfa686b2f8b",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:8afafea1-903a-4e02-b736-1ce962120865",
+        "@id": "urn:ad79dd69-ed1b-4779-9661-bdeccfa262ee",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:bdcad4b4-738c-438d-bf8f-a3afa9085d98",
+        "GeneratedBy": "urn:1ab57373-008c-4185-a4a0-b4055817c834",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:7409e6c4-7e3c-41fc-8ade-752542f081ae",
+        "@id": "urn:66e2b8c9-38e4-419a-bc3a-b1730de5c887",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:7dedc9bb-8c86-4990-a6b8-648da3100168",
+        "@id": "urn:f565cf28-54ed-4c08-ad1c-4c86fbd4209a",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:694de773-9fb6-4d11-9f94-7d4464c1040d",
+        "@id": "urn:783f0bfe-bc17-4fd3-86e4-5265722f4f3f",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:5718e82a-6a92-4d95-94ea-33eedbc07817",
+        "GeneratedBy": "urn:ee7e472a-0fd8-46e5-84aa-d9c56df36337",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
       },
       {
-        "@id": "urn:5387229e-d088-4ba4-884e-34bc3ff43df0",
+        "@id": "urn:d51f009a-c70a-46d4-b88f-f68e1961fbdf",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -333,7 +333,7 @@
         }
       },
       {
-        "@id": "urn:cdecbeaf-18f4-4a48-8375-8486e681054a",
+        "@id": "urn:8e7d0070-8079-4c57-aede-ac31ab3d2c61",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -341,7 +341,7 @@
         }
       },
       {
-        "@id": "urn:453f2339-e213-4b5e-ab94-4573425a181a",
+        "@id": "urn:6be892d4-a8b7-43cc-878f-266da06eca50",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -349,16 +349,16 @@
         }
       },
       {
-        "@id": "urn:171aa06b-6403-4488-adb4-7f3e89d9caf0",
+        "@id": "urn:e69f4098-08d3-44bb-a7eb-cae49508103f",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:6a964585-80c4-4fd6-a4b9-3b69782a57cc",
+        "GeneratedBy": "urn:487f22ab-a209-405c-85b8-4b657cbbcb10",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:453f2339-e213-4b5e-ab94-4573425a181a",
+        "@id": "urn:6be892d4-a8b7-43cc-878f-266da06eca50",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -366,16 +366,16 @@
         }
       },
       {
-        "@id": "urn:171aa06b-6403-4488-adb4-7f3e89d9caf0",
+        "@id": "urn:e69f4098-08d3-44bb-a7eb-cae49508103f",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:6a964585-80c4-4fd6-a4b9-3b69782a57cc",
+        "GeneratedBy": "urn:487f22ab-a209-405c-85b8-4b657cbbcb10",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:8350322f-597f-4267-ba24-edba4a2ae54e",
+        "@id": "urn:21ac6c9a-3333-4923-9186-c9e5020afcb9",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -383,7 +383,7 @@
         }
       },
       {
-        "@id": "urn:753d9758-36e4-406a-b40f-4d8ec0e5d9dc",
+        "@id": "urn:e16d69a9-cb22-4fa6-93e3-3f382186da83",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -391,7 +391,7 @@
         }
       },
       {
-        "@id": "urn:f8993cd1-0f00-4bd3-9c0b-b93c14095ac4",
+        "@id": "urn:63f6635e-d42e-4729-93ce-219e08306297",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -399,7 +399,7 @@
         }
       },
       {
-        "@id": "urn:e8fc634a-717b-4e72-a852-cd4cef0e4447",
+        "@id": "urn:6ca79a28-ccba-4ed7-9c3e-b723a3384c43",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run+tlrc",
         "digest": {
@@ -407,7 +407,7 @@
         }
       },
       {
-        "@id": "urn:c0aa7d2f-c91b-4291-987b-f3293bd8bc35",
+        "@id": "urn:44e6ae47-f94d-4f63-b751-deb9963deff6",
         "Label": "dfile.r*.1D",
         "AtLocation": "dfile.r*.1D",
         "digest": {
@@ -415,7 +415,7 @@
         }
       },
       {
-        "@id": "urn:11a104fa-e66b-41e8-b818-75667e809a71",
+        "@id": "urn:27316f60-9bb2-44a4-92e3-10550fd887e9",
         "Label": "rm.epi.min.r01",
         "AtLocation": "rm.epi.min.r01+tlrc",
         "digest": {
@@ -423,7 +423,7 @@
         }
       },
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         "digest": {
@@ -802,7 +802,7 @@
         }
       },
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-        "@id": "urn:ed406cf4-84e0-44ce-b9e3-96c8715b055b",
+        "@id": "urn:63af4367-07e3-4e07-bc18-42a97c68ef60",
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         "digest": {
@@ -810,7 +810,7 @@
         }
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-        "@id": "urn:7564c2c2-a931-4c72-a838-570247b2b213",
+        "@id": "urn:19c0d5bd-aa50-40b0-9902-bd71567b0b67",
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         "digest": {
@@ -818,133 +818,133 @@
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-        "@id": "urn:fb8a8b0f-cb5a-42a1-9109-8209804e1f00",
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         "AtLocation": "motion_demean.1D",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
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+        "@id": "urn:d879f59d-06b6-498b-8909-23c195a04bbd",
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         "AtLocation": "motion_deriv.1D",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
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-        "@id": "urn:715ce524-ccc2-47f4-8b72-9f73e454133c",
+        "@id": "urn:bc517e2d-3c97-4bc8-a4cc-2065b5e47f88",
         "Label": "all_runs.$subj",
         "AtLocation": "all_runs.$subj",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
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       {
-        "@id": "urn:2ac568e4-c12a-4bd1-b4d6-dfdfe0982504",
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         "AtLocation": "rm.signal.all",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
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         "AtLocation": "rm.noise.all",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
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       {
-        "@id": "urn:82a4e9c0-dbe6-455d-bcd3-b26b934765fa",
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         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
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-        "@id": "urn:46da5ab8-2f93-4ab6-b07f-3229ed18cf2c",
+        "@id": "urn:0ad32554-eb1a-4d7a-9d8a-da76202aa10a",
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         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
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       {
-        "@id": "urn:7bbdf8ac-0ffb-4bc1-895d-8861ec9ecfac",
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-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
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       {
-        "@id": "urn:5cedd5b4-458c-4276-81ff-476367f5d9a4",
+        "@id": "urn:0b896bf7-dede-493e-8f82-49d59aa8d3ae",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
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           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
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       {
-        "@id": "urn:92427393-98b5-4022-8061-336cc4b00dde",
+        "@id": "urn:f85fb7de-c148-4172-a778-e19c180afcd6",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
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       {
-        "@id": "urn:191530b0-9eb9-46d7-8143-7d371359a1fc",
+        "@id": "urn:ba739902-3b6e-4bcb-8e1c-1a6b65555274",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
         "digest": {
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+        "@id": "urn:a9bfdb6e-ec73-4cc5-8671-06daf48b1190",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
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       {
-        "@id": "urn:0a5cfb70-7c38-4790-b0e2-bf22f32161b2",
+        "@id": "urn:c16ff10b-d98c-4f4d-b98e-7bd72518b8a2",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:7bd4ef46-e596-482c-9e4d-7c5154719873",
+        "@id": "urn:b0f62f63-a5e4-428e-8d12-236f6b41d2f8",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:5a04266d-2945-46c5-9e01-ac3564a3bc81",
+        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
+        "@id": "urn:cab74723-0ee9-4288-958e-063720df47d4",
         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
         }
       },
       {
-        "@id": "urn:ec0e91e7-0d5a-4651-8771-0d8218963f1c",
+        "@id": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:ea5183ba-9f9d-4703-8055-ad9ac1aaf1f0",
+        "GeneratedBy": "urn:f9926a23-da1b-4676-8f18-6402e78b4e66",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
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       },
       {
-        "@id": "urn:9dd4e0a3-87cb-4c2a-8ce1-6921569445e2",
+        "@id": "urn:f1285616-769b-4a07-ba5b-dd3b362ceada",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:ea5183ba-9f9d-4703-8055-ad9ac1aaf1f0",
+        "GeneratedBy": "urn:f9926a23-da1b-4676-8f18-6402e78b4e66",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:e78bb29a-007b-491d-9e3c-a6001374ecca",
+        "@id": "urn:891c9e64-aa58-40ac-ab51-a4591ef98f3d",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:ea5183ba-9f9d-4703-8055-ad9ac1aaf1f0",
+        "GeneratedBy": "urn:f9926a23-da1b-4676-8f18-6402e78b4e66",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
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       },
       {
-        "@id": "urn:42d99646-29ac-48f5-a5c0-ecc93e09dd52",
+        "@id": "urn:d4ae7eed-f7a0-4b2c-8e95-497986952c6e",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:2366f9b3-3f7a-4ed2-b4a5-c91f73fdfa76",
+        "@id": "urn:30f8dc27-4be2-4901-8212-43ecedfa201c",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:b6be9a53-13e4-4fdc-a78f-6e0ba8ae41d2",
+        "GeneratedBy": "urn:90006fda-2974-4e85-8721-5d30689854db",
         "digest": {
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         }
diff --git a/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc.jsonld b/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc.jsonld
index b18e915c8..c7cb56eb8 100644
--- a/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "@id": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:0ac3c052-6f41-4547-870f-93b91ef0a84c",
+        "@id": "urn:60ac6427-f2f9-4df8-b0a4-2e52279ea854",
         "Label": "Make directory",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:b12172b5-b120-4960-9e98-588064fe5d3d",
+        "@id": "urn:5c807607-6449-4770-b25b-5e78dc0d69c7",
         "Label": "Make directory",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:1e601f81-5617-42ef-af6a-fe9946483903",
+        "@id": "urn:ef4136f0-99bb-4107-ab16-e576bfffbdd3",
         "Label": "cp",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "cp ./afni_voxelwise_fdr_p005/tone_counting_onset_times.txt ./afni_voxelwise_fdr_p005/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:6bfc4ae6-5c3a-4973-a4f8-1a23e1780ca3",
-          "urn:38872af1-a4bd-45a0-a592-b4555d33e8d3"
+          "urn:293853a7-2b50-43fc-9520-a57ca37b2b75",
+          "urn:a305c30b-a37a-44ea-8c35-13978fc055af"
         ]
       },
       {
-        "@id": "urn:20ffe775-1cac-4507-b351-59b11f4615eb",
+        "@id": "urn:6c362f45-df32-43c4-8c57-d8456a54f0be",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:78c5f0b6-e85c-4a57-8482-2c7215257822"
+          "urn:7e735ee0-84b9-4620-8066-77f43296af08"
         ]
       },
       {
-        "@id": "urn:146e65ce-01ff-4b1b-93a6-8d9697dc5f58",
+        "@id": "urn:784958c7-9655-4c6a-b6fe-1e9b2b5aa90c",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:9c77fa9f-9cdc-4543-8a8d-38275793aeb0"
+          "urn:ed01e6fd-a6a0-4ff2-a6c0-ef61f178913f"
         ]
       },
       {
-        "@id": "urn:c137464a-c04b-4db9-8189-34c3690525ad",
+        "@id": "urn:fd5cfc88-112e-46d7-881f-f322692999a8",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:339f5128-3ff0-4e59-a183-937ead1f4756"
+          "urn:ad73a849-252a-4eab-a0ed-4e6f135564da"
         ]
       },
       {
-        "@id": "urn:7e44b770-8d71-419f-acc7-53ddd529ea51",
+        "@id": "urn:64f2b964-b55e-418f-acbf-fb9e9e0e8437",
         "Label": "cat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:0d46e72a-feab-4f6a-ba4f-10c89aa837dd"
+          "urn:c4839939-2e5f-41a7-acd2-fab9794c49cc"
         ]
       },
       {
-        "@id": "urn:c825f79e-70a4-49f9-871b-614b6f2037d2",
+        "@id": "urn:a9b6c421-df6f-4d8f-8949-e84066a596fc",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:339f5128-3ff0-4e59-a183-937ead1f4756"
+          "urn:ad73a849-252a-4eab-a0ed-4e6f135564da"
         ]
       },
       {
-        "@id": "urn:c04a8817-03a1-42de-bceb-57bfcf5274c3",
+        "@id": "urn:9d08e256-18dc-49a0-aaf2-712b1d2f9058",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
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-          "urn:2b1ff054-4323-4a81-a8b2-ab40230aae81",
-          "urn:5c99fbfa-175c-45d4-81cc-ba9545d0077a"
+          "urn:7cbb0614-9599-46c3-a88b-12051f4807c6",
+          "urn:df92cbe6-0bd4-4c06-8a1f-c506d04e61aa"
         ]
       },
       {
-        "@id": "urn:4e6ee55a-2606-43d5-8318-fe5853c29fc2",
+        "@id": "urn:cd0208c7-17e5-427d-a397-16b38eb8273e",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:8c983441-d454-42c9-a6c2-0ac8fd4e7844",
-          "urn:ddace0ae-fa26-408a-a611-f76c0d6494a6"
+          "urn:c9073dc8-0f92-4a58-87c6-462a9196c888",
+          "urn:d4278130-8cdf-448b-ab29-18f934b19c89"
         ]
       },
       {
-        "@id": "urn:b3680a68-0f93-4b8e-a17c-8b4847593adf",
+        "@id": "urn:223b5f50-2b03-45d3-b424-40d1fa650516",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:025f40a3-cd87-42e1-8012-f0f99da7b63f"
+          "urn:678905c1-d3f9-4079-8e8a-ebeff7b289ba"
         ]
       },
       {
-        "@id": "urn:f5f40dd2-8ee4-4318-861b-9070b035cd17",
+        "@id": "urn:efc86a01-5f01-4b48-9380-fdb30ecd01b2",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:5942de21-999c-4019-8e04-6978dbabc03c"
+          "urn:fef3aff5-1de5-4c25-8ff1-4d95a6ef5a30"
         ]
       },
       {
-        "@id": "urn:d1ec081b-dca9-4e34-b453-c9369a7d8f14",
+        "@id": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:5942de21-999c-4019-8e04-6978dbabc03c"
+          "urn:fef3aff5-1de5-4c25-8ff1-4d95a6ef5a30"
         ]
       },
       {
-        "@id": "urn:5a331a8f-133d-42f1-9cd8-db061bfd5b10",
+        "@id": "urn:5ff1801c-9116-43a9-aa4a-c72b55bfef4e",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:025f40a3-cd87-42e1-8012-f0f99da7b63f"
+          "urn:678905c1-d3f9-4079-8e8a-ebeff7b289ba"
         ]
       },
       {
-        "@id": "urn:2486d696-f1a8-466b-ba4b-839949c75305",
+        "@id": "urn:f0025fe9-879f-4469-a137-261e544d5478",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:580d3f39-2ed1-4d19-a7cb-afc1dca96dcd",
-          "urn:5942de21-999c-4019-8e04-6978dbabc03c",
-          "urn:214821d7-ad17-4c86-8e25-55b7d3cf8238"
+          "urn:1407a659-fd7a-4484-8d8e-01defef6f7b1",
+          "urn:a41cf029-3f2e-42b7-bdbf-e8d710365518",
+          "urn:fef3aff5-1de5-4c25-8ff1-4d95a6ef5a30"
         ]
       },
       {
-        "@id": "urn:f284d218-a06b-47db-b80f-bc5f8cbe08b9",
+        "@id": "urn:bc442431-361a-4ce5-971c-cf8eddac2c4c",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:580d3f39-2ed1-4d19-a7cb-afc1dca96dcd",
-          "urn:cf862659-769f-4670-a1c9-e8942ea215d6",
-          "urn:214821d7-ad17-4c86-8e25-55b7d3cf8238"
+          "urn:1407a659-fd7a-4484-8d8e-01defef6f7b1",
+          "urn:a41cf029-3f2e-42b7-bdbf-e8d710365518",
+          "urn:ceeead2a-ad34-47d3-90e6-938a3309d894"
         ]
       },
       {
-        "@id": "urn:c2e3c6f9-ef9b-4224-81c0-d12f2387a4ab",
+        "@id": "urn:b71fd583-0674-4c89-a2f8-d444419c7562",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:6125b559-65da-4d84-91f6-f5e0bb74253d"
+          "urn:fbc5b261-27ad-48b2-8d9d-f0abc6a2f421"
         ]
       },
       {
-        "@id": "urn:a47f7d54-cf4a-4bfe-af42-a419f102dd1b",
+        "@id": "urn:bc34e799-ee74-412a-bfec-b63b237f82cb",
         "Label": "cat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:b8510365-9a63-4fce-a710-1fac7f827369"
+          "urn:2b92b353-7620-4afd-871b-bfa460def5c6"
         ]
       },
       {
-        "@id": "urn:51ab3eeb-51b3-4557-9bb6-321611d9b28b",
+        "@id": "urn:5eb20761-d530-43d3-94b9-5355fcf7f3d8",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:c5509615-585c-4c3e-89d6-842233802aa1"
+          "urn:1c76f216-0aa4-4f8e-85f7-bfbced813d7d"
         ]
       },
       {
-        "@id": "urn:8e5e1111-0d24-45d4-b417-44fcab66d978",
+        "@id": "urn:c7f1f41c-a405-40c0-944e-f6749c09aa9b",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:01c14a4b-ed94-4cd7-aecf-b1cf5dbd0636",
-          "urn:b0870209-65e9-4f07-bb0e-04a01421ebca"
+          "urn:a1818c62-2095-4959-86e3-ffb15482055e",
+          "urn:a9909b0a-06e7-42d5-ae5b-699ba62cce5c"
         ]
       },
       {
-        "@id": "urn:5ede64d7-ed6a-43e8-9d84-48c85ba3337d",
+        "@id": "urn:9a843d97-01d0-4bd0-87f5-e2fa80b1b1db",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:580d3f39-2ed1-4d19-a7cb-afc1dca96dcd"
+          "urn:1407a659-fd7a-4484-8d8e-01defef6f7b1"
         ]
       },
       {
-        "@id": "urn:47081172-561d-45b2-966f-017725144a5a",
+        "@id": "urn:298dc7d5-bb5b-4176-aebc-48c1081d2dac",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:8f9d2d72-9169-489e-a681-528405d545fb"
+          "urn:c9d42685-079c-4445-b83e-ce7178ddd0fa"
         ]
       },
       {
-        "@id": "urn:1e5f7ab0-fe79-4408-9285-7703f62ada81",
+        "@id": "urn:4b2b930b-628e-4e39-8f09-0c73566c0dfb",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:48ef0bfa-2e36-4e1d-b1cd-a8c2ae60de83",
-          "urn:b85d2b6f-cd72-46a9-9170-9e771394d1c3"
+          "urn:15b051f7-2e68-47b4-8c46-1d2ca75e246f",
+          "urn:766c924e-2b0d-42fa-bb26-1f89e6182516"
         ]
       },
       {
-        "@id": "urn:a526b97a-55a5-4dc9-b3f9-814e2a95b0fe",
+        "@id": "urn:70371069-142c-4e78-b151-6ec28fa99fc4",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:7be37559-6bf1-48c8-a499-879e7c0a4005"
+          "urn:46008793-da4c-4675-95a2-9665da5c4eda"
         ]
       },
       {
-        "@id": "urn:dee7b627-8bbc-4dbc-ab35-5cbe42b58957",
+        "@id": "urn:5f936fa4-b3cf-47d1-99ed-f6ed17e7d2e9",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:527ee1c5-ac52-416d-8dc3-02d3ee9ab6d3",
+        "@id": "urn:ea575ae5-8930-4141-a4c2-d8ef656487f6",
         "Label": "3dresample",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:580d3f39-2ed1-4d19-a7cb-afc1dca96dcd",
-          "urn:f8f82bba-8f80-41cb-b392-8fc935ddc6dd"
+          "urn:1407a659-fd7a-4484-8d8e-01defef6f7b1",
+          "urn:9afb0d8c-87de-47ba-8300-b53136b969a7"
         ]
       },
       {
-        "@id": "urn:4688a0da-b830-4568-ab4d-6194265ae343",
+        "@id": "urn:4209a343-3884-4554-9ebc-7ec0df1f26f7",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:199f626c-2d13-4c2a-b33b-34c7dc9aa47f"
+          "urn:8f5db629-7053-4922-b9f0-6bdf5a81ae52"
         ]
       },
       {
-        "@id": "urn:64a62b27-c7d0-4419-9538-7329af3dd622",
+        "@id": "urn:34b6df30-bd5a-4398-9342-1874c1deb96d",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:a909d3a6-899d-4094-8057-76e748420573",
-          "urn:201ec870-0145-4a31-9d4a-0cbac8184ca4"
+          "urn:3cbb8f84-a9e2-44ca-8654-65448f05f932",
+          "urn:40f4de67-872c-4eb2-aa1b-fcd9d510265a"
         ]
       },
       {
-        "@id": "urn:0f15b38a-e271-450e-b7c3-14c46bfb8783",
+        "@id": "urn:b59ccf17-52ef-44e6-8967-572a84fccdb9",
         "Label": "3ddot",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:a909d3a6-899d-4094-8057-76e748420573",
-          "urn:201ec870-0145-4a31-9d4a-0cbac8184ca4"
+          "urn:3cbb8f84-a9e2-44ca-8654-65448f05f932",
+          "urn:40f4de67-872c-4eb2-aa1b-fcd9d510265a"
         ]
       },
       {
-        "@id": "urn:ae357776-5485-4889-bb9e-c387428c9166",
+        "@id": "urn:380501ca-17d2-4ef6-b735-bdd2502c1fd6",
         "Label": "3dresample",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:f19d6328-24e2-42c1-ad5d-1fc16a1931d0",
-          "urn:f8f82bba-8f80-41cb-b392-8fc935ddc6dd"
+          "urn:726b56ad-e50b-49f5-819b-0c8a8088d13f",
+          "urn:9afb0d8c-87de-47ba-8300-b53136b969a7"
         ]
       },
       {
-        "@id": "urn:5d7ec244-9551-4cb8-99be-7c1dad861e6c",
+        "@id": "urn:62133b1c-e258-4578-8377-9c4c48a504b3",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:a54b8921-42d3-47d2-a1ab-b3a0180ec2d4"
+          "urn:7c153386-680f-469c-9558-1ef58f5e9387"
         ]
       },
       {
-        "@id": "urn:b3121925-d672-4712-af45-24dbda16034d",
+        "@id": "urn:966bda3f-ef3a-4c6b-96f3-37a8f63317ac",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:7be37559-6bf1-48c8-a499-879e7c0a4005"
+          "urn:46008793-da4c-4675-95a2-9665da5c4eda"
         ]
       },
       {
-        "@id": "urn:1f07ea58-80fc-4ffe-944d-a5da07ab3038",
+        "@id": "urn:f2718969-5393-4474-810c-18a55930c2b3",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:7be37559-6bf1-48c8-a499-879e7c0a4005",
-          "urn:970956ae-ef48-4c77-b7bf-2eaaed636b16",
-          "urn:b0870209-65e9-4f07-bb0e-04a01421ebca"
+          "urn:46008793-da4c-4675-95a2-9665da5c4eda",
+          "urn:a9909b0a-06e7-42d5-ae5b-699ba62cce5c",
+          "urn:d4855f22-1f95-4735-9a85-8c55d4f931b4"
         ]
       },
       {
-        "@id": "urn:4ecbb73d-2077-4d41-85ef-8d76176486f4",
+        "@id": "urn:c81268eb-5e93-4ef2-a06f-12a37475e7f7",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:d16e1d03-91c1-44be-b2e2-01f8510acb7c"
+          "urn:96298bd4-56d1-49ad-8c03-cecf40d46075"
         ]
       },
       {
-        "@id": "urn:7ece0046-69d0-453f-b841-4914e61a6f52",
+        "@id": "urn:bb970877-b8e1-4deb-bcd4-3241dcacc59e",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:d16e1d03-91c1-44be-b2e2-01f8510acb7c"
+          "urn:96298bd4-56d1-49ad-8c03-cecf40d46075"
         ]
       },
       {
-        "@id": "urn:fd80192e-6ca9-4f86-97ad-12b807eae30f",
+        "@id": "urn:91406eb5-1759-4dab-82d5-c0c43b5d80ef",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:d16e1d03-91c1-44be-b2e2-01f8510acb7c"
+          "urn:96298bd4-56d1-49ad-8c03-cecf40d46075"
         ]
       },
       {
-        "@id": "urn:33ab62c8-9f1b-4e94-941b-c9201ef46fd0",
+        "@id": "urn:a20b66f5-dc52-4a8a-ab60-eab714ac4963",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:52627452-6a11-4548-851b-68d0c1c1247a"
+          "urn:d59e4156-cfd3-425b-aabf-92519931fc2c"
         ]
       },
       {
-        "@id": "urn:403fd3a8-2563-4e0c-857b-1bebc80b2d71",
+        "@id": "urn:fab5364a-1378-4e37-9a8b-cf22f60a9a30",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:7852bcb8-5b20-4e3d-b988-b3d0a7cd856a"
+          "urn:130be5b5-1d74-4f34-aa19-8883f9dc0198"
         ]
       },
       {
-        "@id": "urn:e00697fb-7e8b-4090-8a45-79be638ae447",
+        "@id": "urn:2ddf06d7-bcb2-4949-b78b-7ebda1733463",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:52627452-6a11-4548-851b-68d0c1c1247a"
+          "urn:d59e4156-cfd3-425b-aabf-92519931fc2c"
         ]
       },
       {
-        "@id": "urn:07fce6f9-2f95-4236-86c2-f8cdad14a55a",
+        "@id": "urn:e413cb9e-66c0-45cb-a31f-541be143d96f",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:52df3fa4-d453-4873-a4e7-7cff42bb45f6"
+          "urn:1617de95-9492-49a4-997c-c3fff2ae8c6d"
         ]
       },
       {
-        "@id": "urn:3338d962-1dc5-43c4-8b75-720ca98dd570",
+        "@id": "urn:4037cdbc-a9fa-42df-984c-8469028aa60a",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:e36061c5-57b1-4a49-ae7e-0484d46f0d41"
+          "urn:e1f6cc09-c137-4859-894f-10d0a6bd0c23"
         ]
       },
       {
-        "@id": "urn:40dbdf46-570c-41fc-95d3-253dbe2e58c5",
+        "@id": "urn:afb7ccbc-ae02-4cf5-a4ad-e90da3838f67",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj",
         "Parameters": {},
         "Used": [
-          "urn:437b4733-b718-48db-b954-260a3f94bd67",
-          "urn:f8a1c91e-1034-4376-98f7-2013730c5cc8",
-          "urn:f8f82bba-8f80-41cb-b392-8fc935ddc6dd"
+          "urn:529cf71a-5021-4ba3-8f9b-5d0f3ac8187d",
+          "urn:686a8225-b31f-4025-9b31-c2c64bb0c114",
+          "urn:9afb0d8c-87de-47ba-8300-b53136b969a7"
         ]
       },
       {
-        "@id": "urn:bf65fe1e-ad76-47f9-a992-39f329cd3457",
+        "@id": "urn:8a71a648-4d87-4e46-a43a-e9bca7ce84ba",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:ce42a61b-ef8f-4e71-8f12-7425fa64d4d5"
+          "urn:a9c2c6b0-9fb1-4dce-86b7-7718a9ef3d1a"
         ]
       },
       {
-        "@id": "urn:5d41178a-42ce-4693-8b77-8e7c79d0157d",
+        "@id": "urn:c74ef101-704e-4506-ae89-a363ce40b2db",
         "Label": "3dmaskave",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:aba916e9-f3ed-4c02-926d-b0522187522f",
+        "@id": "urn:081fa336-6cc1-4eb4-8b76-659180dbea4b",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D",
         "Parameters": {},
         "Used": [
-          "urn:e419e2b5-ff1d-4b58-b687-eccac743696d"
+          "urn:97b6c82e-f1d3-48dc-82b4-17bfeb916d8b"
         ]
       },
       {
-        "@id": "urn:845fd8cc-b941-4771-9a49-9b1e33707282",
+        "@id": "urn:83ae1c41-4e52-43b6-beef-857cab51b576",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP",
         "Parameters": {},
         "Used": [
-          "urn:ee2da733-8901-4641-8d57-d3db216ea5ba",
-          "urn:5a7d3988-7a4e-412a-a2a9-f6f681725a3b"
+          "urn:511ee360-0b7a-4223-946e-28c5c2cdec26",
+          "urn:81af6e38-e763-4d07-822f-34aacf80459e"
         ]
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       {
-        "@id": "urn:a6cf3443-a7a0-40c4-9036-dfeb288a68a3",
+        "@id": "urn:1a014967-de1c-46ed-a37f-26cb3f7eda52",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -sum -prefix corr_brain rm.DP+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:b9c6adb1-025e-452c-b725-c94944c871d2"
+          "urn:bde49ce6-af3e-4616-8f87-272181752a26"
         ]
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       {
-        "@id": "urn:f3643f90-ab06-40c7-a7bb-1aa2b46a224d",
+        "@id": "urn:b749c781-f2ad-471d-a39c-effdffc69219",
         "Label": "1dcat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D",
         "Parameters": {},
         "Used": [
-          "urn:934646fa-7bbc-4805-a09f-9f5610ab15fc"
+          "urn:69a3a04f-f0e7-428c-bf7f-98b6a0098ad3"
         ]
       },
       {
-        "@id": "urn:de7f430f-f2eb-4061-b036-5003bc80de44",
+        "@id": "urn:a9563344-2af3-4f9b-a158-b055df86882d",
         "Label": "1dcat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D",
         "Parameters": {},
         "Used": [
-          "urn:4d84c4a2-4d4a-4c24-bebe-a6c923523ebd"
+          "urn:4bb24dcb-7e84-4293-af56-cf0afe4d1ca9"
         ]
       },
       {
-        "@id": "urn:4ee7d8c0-5b6f-4a09-922b-93a7fddcb451",
+        "@id": "urn:da3000b5-650b-4cb2-8cbb-dc42cabb876e",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"",
         "Parameters": {},
         "Used": [
-          "urn:ce34796c-ecbb-473e-aabd-9aaac62ef33c"
+          "urn:aa2d4900-01b1-4586-94b8-bee17c62e5b8"
         ]
       },
       {
-        "@id": "urn:d237511c-d4fe-4f91-8b85-36412e67696c",
+        "@id": "urn:c97b4bb7-f8fa-4bc6-bcdf-8ab52723dc9e",
         "Label": "1dcat",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:ce34796c-ecbb-473e-aabd-9aaac62ef33c"
+          "urn:aa2d4900-01b1-4586-94b8-bee17c62e5b8"
         ]
       },
       {
-        "@id": "urn:294a7e16-60f3-471c-8de2-b6a3dede683c",
+        "@id": "urn:1207013b-244d-4675-998f-ada93a74cded",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
         "Used": [
-          "urn:f8f82bba-8f80-41cb-b392-8fc935ddc6dd"
+          "urn:9afb0d8c-87de-47ba-8300-b53136b969a7"
         ]
       },
       {
-        "@id": "urn:2a58157b-3946-4dfb-be38-c2c41246736e",
+        "@id": "urn:d23d365d-bc81-4feb-aa92-49f60ef280ac",
         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D",
         "Parameters": {},
         "Used": [
-          "urn:f8f82bba-8f80-41cb-b392-8fc935ddc6dd"
+          "urn:9afb0d8c-87de-47ba-8300-b53136b969a7"
         ]
       },
       {
-        "@id": "urn:2cd61c81-dfdb-4860-93a4-ff10d46d4b60",
+        "@id": "urn:f9850102-6111-4db5-9684-ff4deebda300",
         "Label": "3dClustSim",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim",
         "Parameters": {},
         "Used": [
-          "urn:f8f82bba-8f80-41cb-b392-8fc935ddc6dd"
+          "urn:9afb0d8c-87de-47ba-8300-b53136b969a7"
         ]
       },
       {
-        "@id": "urn:ace6277e-bc4d-46d7-b056-76ac6741a493",
+        "@id": "urn:58593ee7-e92c-41c8-abd4-db8f69e4a693",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:21e521a1-5a90-48de-bc39-16737d89f891"
+          "urn:9cc55ce2-65a9-469b-85ba-5ba4ded3cb2b"
         ]
       },
       {
-        "@id": "urn:1933990b-9a5d-4b26-995b-8e6e70d8c7cc",
+        "@id": "urn:9334173e-be89-47f0-b122-4b20dc4548ea",
         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:5efcfaa0-9adb-4029-913f-25636acc25d1",
+        "AssociatedWith": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
         "Command": "gen_ss_review_scripts.py -mot_limit 0.3 -exit0",
         "Parameters": {
           "-mot_limit": "0.3",
@@ -586,22 +586,22 @@
     ],
     "Entities": [
       {
-        "@id": "urn:eb92f9df-ef75-491e-928e-c8328bd4532d",
+        "@id": "urn:86b7f4b4-4cd2-4ebe-b137-bfd68b16e015",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:0ac3c052-6f41-4547-870f-93b91ef0a84c",
+        "GeneratedBy": "urn:60ac6427-f2f9-4df8-b0a4-2e52279ea854",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:b771dcfe-c85d-41b2-95d1-8040d6be5ea8",
+        "@id": "urn:3256a338-3396-4916-bb29-dc788cf16b91",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:b12172b5-b120-4960-9e98-588064fe5d3d"
+        "GeneratedBy": "urn:5c807607-6449-4770-b25b-5e78dc0d69c7"
       },
       {
-        "@id": "urn:6bfc4ae6-5c3a-4973-a4f8-1a23e1780ca3",
+        "@id": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_voxelwise_fdr_p005/tone_counting_onset_times.txt",
         "digest": {
@@ -609,7 +609,7 @@
         }
       },
       {
-        "@id": "urn:38872af1-a4bd-45a0-a592-b4555d33e8d3",
+        "@id": "urn:293853a7-2b50-43fc-9520-a57ca37b2b75",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_voxelwise_fdr_p005/tone_counting_probe_duration.txt",
         "digest": {
@@ -617,13 +617,13 @@
         }
       },
       {
-        "@id": "urn:e910de43-3fa5-4f82-bf5d-87a1382af00d",
+        "@id": "urn:39706bf2-a3f7-4bcf-9890-783eb61fe18e",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:1e601f81-5617-42ef-af6a-fe9946483903"
+        "GeneratedBy": "urn:ef4136f0-99bb-4107-ab16-e576bfffbdd3"
       },
       {
-        "@id": "urn:78c5f0b6-e85c-4a57-8482-2c7215257822",
+        "@id": "urn:7e735ee0-84b9-4620-8066-77f43296af08",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -631,13 +631,13 @@
         }
       },
       {
-        "@id": "urn:6994398e-bc35-4415-9880-afd5e50c2276",
+        "@id": "urn:001bda1e-4507-43fa-a69e-407a63862dba",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:20ffe775-1cac-4507-b351-59b11f4615eb"
+        "GeneratedBy": "urn:6c362f45-df32-43c4-8c57-d8456a54f0be"
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@@ -645,13 +645,13 @@
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@@ -659,16 +659,16 @@
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@@ -676,25 +676,25 @@
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@@ -702,7 +702,7 @@
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@@ -710,16 +710,16 @@
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@@ -727,7 +727,7 @@
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@@ -735,7 +735,7 @@
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@@ -743,16 +743,16 @@
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@@ -760,34 +760,34 @@
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@@ -795,16 +795,16 @@
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@@ -812,16 +812,16 @@
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@@ -829,16 +829,16 @@
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@@ -846,16 +846,16 @@
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@@ -863,16 +863,16 @@
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@@ -880,7 +880,7 @@
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@@ -888,34 +888,34 @@
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@@ -923,7 +923,7 @@
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@@ -931,7 +931,7 @@
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@@ -939,25 +939,25 @@
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@@ -965,16 +965,16 @@
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@@ -982,16 +982,16 @@
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         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:1933990b-9a5d-4b26-995b-8e6e70d8c7cc",
+        "GeneratedBy": "urn:9334173e-be89-47f0-b122-4b20dc4548ea",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc_bloc.jsonld b/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc_bloc.jsonld
index 5d12d54dc..438d07c88 100644
--- a/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_voxelfdrp05_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "@id": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:48149b18-b685-420c-aa12-600700527a8b",
+        "@id": "urn:15455f94-530a-460a-a7b6-2130b0cc78ee",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_voxelwise_fdr_p005/tone_counting_onset_times.txt ./afni_voxelwise_fdr_p005/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:898da8f5-a63a-4248-84b6-c59a933aec05",
-          "urn:5a12057b-7894-4658-8885-bf8772cdd0cf",
-          "urn:660fe90e-75ea-435d-8db6-d226d404baef"
+          "urn:085442e0-7613-43c0-be47-8b83e0e2604b",
+          "urn:57907561-aabf-43fd-ab44-4d130188cf3e",
+          "urn:129e5718-0a40-4429-a259-095c28c7a2d6"
         ]
       },
       {
-        "@id": "urn:4abf85b0-30e5-4e03-92bb-35fd73da6f1d",
+        "@id": "urn:6093bb5e-5d55-4dce-98ad-91ef62e3993f",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3"
+          "urn:28c52fef-260a-4cee-9b3b-c7af96752e12"
         ]
       },
       {
-        "@id": "urn:e65f3ff3-df11-4c71-98a9-d653b6e20e63",
+        "@id": "urn:f97e9638-f9aa-4f35-8225-62aeaa38350d",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:2601600d-77ad-47b1-943f-527dce2f3c41",
-          "urn:95b07d19-1268-4da8-aef5-714ebce7e815"
+          "urn:2ccd78dd-e38b-4537-a039-90c1a17501fb",
+          "urn:dceaced7-8496-4699-9576-12b35f78fa94"
         ]
       },
       {
-        "@id": "urn:5a8ac39b-1335-4c41-889f-60783a5e2b84",
+        "@id": "urn:58a1acaf-fb60-40ba-9f05-b1c92504a557",
         "Label": "tshift",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:2601600d-77ad-47b1-943f-527dce2f3c41"
+          "urn:2ccd78dd-e38b-4537-a039-90c1a17501fb"
         ]
       },
       {
-        "@id": "urn:d9466a6c-9b6f-4bf0-9164-e9ea186ea434",
+        "@id": "urn:da1814d2-4009-410a-bd5a-8ad1af6ec820",
         "Label": "align",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:48daa469-7980-4aef-8da7-ad179b504481",
-          "urn:1abaf4b3-3b8b-47a5-9bef-ea9e15727931"
+          "urn:6c0ab2a1-6f09-42c4-b49e-b121ea859c78",
+          "urn:6c55e71b-8928-46d6-9877-d304c2ba90b8"
         ]
       },
       {
-        "@id": "urn:54a4c888-fa93-41c0-873a-cc43fff460c0",
+        "@id": "urn:ab05a81a-6316-4ff1-aa5b-f65dc614b38e",
         "Label": "tlrc",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:c72a767c-6c04-48a4-840f-8f8fce9c046f",
-          "urn:8ddb5caa-1d83-4fa7-81bc-bc33c94e9de0",
-          "urn:f48bc076-8f2e-47d0-b651-3a12200ba777"
+          "urn:35737c62-7629-4ffd-8d4e-5701ddd34404",
+          "urn:aa87fcd7-0433-478a-9db1-162ff31d7582",
+          "urn:4fb3b843-49bb-41d9-95af-7ab01880f2fa"
         ]
       },
       {
-        "@id": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
+        "@id": "urn:dfb9f380-0298-4b23-ae00-e32307060785",
         "Label": "volreg",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:30934d7f-fa54-4dc4-92c2-0692dcc79bf8",
-          "urn:30934d7f-fa54-4dc4-92c2-0692dcc79bf8",
-          "urn:f48bc076-8f2e-47d0-b651-3a12200ba777",
-          "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af",
-          "urn:30934d7f-fa54-4dc4-92c2-0692dcc79bf8",
-          "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af",
-          "urn:35351fd9-63f9-465b-8b5f-9d5214224587",
-          "urn:cc63cbf1-a938-4f36-94b0-28d7334c06ff",
-          "urn:d5c97dfd-bc9a-4c8f-bd4f-fa5162003600",
-          "urn:1bea0f51-9adc-43ee-8606-9199fe51d37c",
-          "urn:d2d3e2a4-d1c8-4526-981d-515d6e512abc",
-          "urn:b38636c2-8db1-4744-9952-28a75ff3368d",
-          "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af",
-          "urn:63ad4bc7-4d97-46bc-b872-48b4e3cc971d"
+          "urn:2eb65be7-2c3d-451f-a186-14e31708f86e",
+          "urn:2eb65be7-2c3d-451f-a186-14e31708f86e",
+          "urn:4fb3b843-49bb-41d9-95af-7ab01880f2fa",
+          "urn:2eb65be7-2c3d-451f-a186-14e31708f86e",
+          "urn:8885981b-cea7-4492-920a-1e5a26cbb875",
+          "urn:8885981b-cea7-4492-920a-1e5a26cbb875",
+          "urn:a5e6ae32-cb04-46f9-a999-7d0ebd8b8db9",
+          "urn:92c3e4de-0ff4-4a84-bb19-096b59a10c02",
+          "urn:f4b9999c-6136-49d0-97a3-0d20890a86bc",
+          "urn:9d037f7f-4ce3-489d-8b6b-c277d8fa285d",
+          "urn:2d85d493-2f98-4769-b7f5-6f0388debfec",
+          "urn:e3c57f2e-612b-41d6-aff1-30c850c84548",
+          "urn:8885981b-cea7-4492-920a-1e5a26cbb875",
+          "urn:b7981c4c-caca-48bd-8760-5fe3b612c1f6"
         ]
       },
       {
-        "@id": "urn:a781eafc-1231-45aa-8acf-0aff50490664",
+        "@id": "urn:785876fb-f04d-4de2-a373-bff7fdd779d8",
         "Label": "blur",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
-          "urn:a1805d3b-baeb-4707-b217-71a4d28ace1b"
+          "urn:95fcd406-75cc-4d71-b892-179ebee27d02",
+          "urn:bd6744b9-2023-4e53-9ed3-e67bd58bfd97"
         ]
       },
       {
-        "@id": "urn:3689a407-0661-43c1-b0a4-bd37850fd700",
+        "@id": "urn:2ec74de8-9ad4-49f3-8e6b-a2fd4c979565",
         "Label": "mask",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:64758879-6b04-479d-8021-1385b8b85587",
-          "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af",
-          "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
-          "urn:4963497e-481b-4679-a1f7-425b747b8db9",
-          "urn:198081c3-d54d-4afa-8c05-56a43bd2ec90",
-          "urn:8d068463-26b0-4236-8937-fcb1118a01eb",
-          "urn:198081c3-d54d-4afa-8c05-56a43bd2ec90",
-          "urn:8d068463-26b0-4236-8937-fcb1118a01eb",
-          "urn:8154353f-62f4-4f33-a5e0-b25cfb3e0bf4",
-          "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
-          "urn:c73fa496-d31f-4802-97a4-ed7e422f2b73"
+          "urn:50bea5d4-4dc1-48df-aee1-7f8a209875e7",
+          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
+          "urn:8885981b-cea7-4492-920a-1e5a26cbb875",
+          "urn:70d7cd80-32f6-4994-a4d4-c3fed4e02383",
+          "urn:8967c63f-5fc7-44a6-a350-10e4d91420e5",
+          "urn:f0664c49-ddd6-4d24-a5ba-c6bbf6b11662",
+          "urn:8967c63f-5fc7-44a6-a350-10e4d91420e5",
+          "urn:f0664c49-ddd6-4d24-a5ba-c6bbf6b11662",
+          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
+          "urn:b4cb0bba-46e0-4c70-b0ed-fc17fcc0c5d5",
+          "urn:877c6274-e93f-4843-8f27-6c3ba56bca0e"
         ]
       },
       {
-        "@id": "urn:f21f492c-1ded-461d-a8ba-11cf5b61aacf",
+        "@id": "urn:2d84b2b3-25e8-4f59-9bf3-a3e86d62f806",
         "Label": "scale",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:64758879-6b04-479d-8021-1385b8b85587",
-          "urn:64758879-6b04-479d-8021-1385b8b85587",
-          "urn:a020ff0c-b5e2-4414-a32c-0791ca1dd749",
-          "urn:b38636c2-8db1-4744-9952-28a75ff3368d"
+          "urn:50bea5d4-4dc1-48df-aee1-7f8a209875e7",
+          "urn:2d85d493-2f98-4769-b7f5-6f0388debfec",
+          "urn:50bea5d4-4dc1-48df-aee1-7f8a209875e7",
+          "urn:c46767c5-eee1-46c5-be47-43f187434027"
         ]
       },
       {
-        "@id": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "@id": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "Label": "regress",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:f4931a39-0143-4666-b2d0-ea5a028c7585",
-          "urn:f4931a39-0143-4666-b2d0-ea5a028c7585",
-          "urn:f4931a39-0143-4666-b2d0-ea5a028c7585",
-          "urn:7365d26e-619c-4e80-a058-964fa937d9e5",
-          "urn:7365d26e-619c-4e80-a058-964fa937d9e5",
-          "urn:7e5eb7b6-e0e9-4515-8d8a-332f2753d583",
-          "urn:5a7ec459-4af7-4ecb-9669-f5681bfecdf9",
-          "urn:30df620a-6022-4cb7-8b04-92b6ee439617",
-          "urn:ac0a1582-d0e6-4c06-8f3c-f7e2371d9d71",
-          "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
-          "urn:a0b6b6d8-e7c9-4497-8f03-00bb7ea256c8",
-          "urn:79386b89-5260-48ae-9ca8-585c2ffa0480",
-          "urn:a2fcc21f-bcf1-477c-9b63-18d475287023",
-          "urn:238b43bf-8fe0-40ba-a54d-1954ced0274f",
-          "urn:95f9e98f-16a1-4203-add4-aa09068c95cc",
-          "urn:77b2b3c9-72c6-4f55-9698-593ae4c90620",
-          "urn:e29d8494-1287-4ba6-a240-13d062db51c0",
-          "urn:e29d8494-1287-4ba6-a240-13d062db51c0"
+          "urn:6d333ab9-b325-4bde-b130-8685d6c388a2",
+          "urn:6d333ab9-b325-4bde-b130-8685d6c388a2",
+          "urn:6d333ab9-b325-4bde-b130-8685d6c388a2",
+          "urn:800b2f42-62f7-43ab-aafe-a9c283857656",
+          "urn:800b2f42-62f7-43ab-aafe-a9c283857656",
+          "urn:c9145c33-424d-4dbf-9940-ee3136099c67",
+          "urn:06dba2b0-6412-48ba-8afb-efd25b669ffa",
+          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
+          "urn:77c453e0-4aac-4eb3-bb28-b93327cc64e2",
+          "urn:aa411b08-993a-490e-b91a-8846bf69d918",
+          "urn:f2112638-40a2-4662-b12e-b2519dfb950c",
+          "urn:dfb84be0-39a0-41e5-9700-2793699294a3",
+          "urn:84bb4292-c4fb-4630-9b9e-4d2f4ad4e630",
+          "urn:f96979bc-1e21-41d2-8b4e-b0f96a988a48",
+          "urn:81c8a9f5-4dfc-44f7-be05-3e1b7699f97b",
+          "urn:192927a4-cb6d-4539-9e0e-3ec9648a0eaa",
+          "urn:97e8eaef-6e21-4bba-9ee0-423a7dfbbe92",
+          "urn:97e8eaef-6e21-4bba-9ee0-423a7dfbbe92"
         ]
       },
       {
-        "@id": "urn:0019adae-0fa4-4e8f-8824-8ecb74ced688",
+        "@id": "urn:c6afac70-e344-4d7e-b579-c052fba1a77f",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
-          "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
-          "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938"
+          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
+          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
+          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4"
         ]
       },
       {
-        "@id": "urn:19f90103-0415-4e89-9031-04bc863b9076",
+        "@id": "urn:88fa4f58-2669-4fbd-8716-253871594873",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:fed1518d-3e15-43d4-8c52-eec8ebe6c1ef",
+        "AssociatedWith": "urn:b8ddd52a-bbf4-4fc6-92fd-5dce1f764117",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:7564cc1a-4e3d-4126-ba65-335ca4eb7193"
+          "urn:8b944e7f-652b-453c-9868-e2dd5303bb49"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:898da8f5-a63a-4248-84b6-c59a933aec05",
+        "@id": "urn:57907561-aabf-43fd-ab44-4d130188cf3e",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_voxelwise_fdr_p005/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:5a12057b-7894-4658-8885-bf8772cdd0cf",
+        "@id": "urn:085442e0-7613-43c0-be47-8b83e0e2604b",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_voxelwise_fdr_p005/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:660fe90e-75ea-435d-8db6-d226d404baef",
+        "@id": "urn:129e5718-0a40-4429-a259-095c28c7a2d6",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:0f7bef4b-4af1-49fc-b13d-3a8b6a9f8dc7",
+        "@id": "urn:1544c31e-843b-4eda-a65d-83f079e3454c",
         "Label": "$output_dir",
         "AtLocation": "$output_dir",
-        "GeneratedBy": "urn:48149b18-b685-420c-aa12-600700527a8b",
+        "GeneratedBy": "urn:15455f94-530a-460a-a7b6-2130b0cc78ee",
         "digest": {
           "sha256": "9fa4c635e6533ddf2fed54295920052818d948c3ffe97bc753bd7336b453f8cb"
         }
       },
       {
-        "@id": "urn:50e20ccc-b165-4f42-9835-b7ed07183397",
+        "@id": "urn:99e7a814-3df2-4296-97a5-cc45eaf22414",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:48149b18-b685-420c-aa12-600700527a8b"
+        "GeneratedBy": "urn:15455f94-530a-460a-a7b6-2130b0cc78ee"
       },
       {
-        "@id": "urn:f58acb68-39c7-4175-81a0-f7b8353c7746",
+        "@id": "urn:ab757f74-c92c-4975-872c-4316678e0289",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:48149b18-b685-420c-aa12-600700527a8b"
+        "GeneratedBy": "urn:15455f94-530a-460a-a7b6-2130b0cc78ee"
       },
       {
-        "@id": "urn:9d077082-757f-4630-99ce-4cea132a877d",
+        "@id": "urn:b1d257f4-28f0-4e6e-b1d0-fa0dc15ca666",
         "Label": "sub-01_T1w",
         "AtLocation": "$output_dir/sub-01_T1w",
-        "GeneratedBy": "urn:48149b18-b685-420c-aa12-600700527a8b"
+        "GeneratedBy": "urn:15455f94-530a-460a-a7b6-2130b0cc78ee"
       },
       {
-        "@id": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
+        "@id": "urn:28c52fef-260a-4cee-9b3b-c7af96752e12",
         "Label": "sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "digest": {
@@ -243,13 +243,13 @@
         }
       },
       {
-        "@id": "urn:24494591-d5d7-4500-ad04-ae114c3334f9",
+        "@id": "urn:167795fc-87bc-4fa8-af0e-78391dd3aec1",
         "Label": "pb00.$subj.r01.tcat",
         "AtLocation": "$output_dir/pb00.$subj.r01.tcat",
-        "GeneratedBy": "urn:4abf85b0-30e5-4e03-92bb-35fd73da6f1d"
+        "GeneratedBy": "urn:6093bb5e-5d55-4dce-98ad-91ef62e3993f"
       },
       {
-        "@id": "urn:2601600d-77ad-47b1-943f-527dce2f3c41",
+        "@id": "urn:2ccd78dd-e38b-4537-a039-90c1a17501fb",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -257,7 +257,7 @@
         }
       },
       {
-        "@id": "urn:95b07d19-1268-4da8-aef5-714ebce7e815",
+        "@id": "urn:dceaced7-8496-4699-9576-12b35f78fa94",
         "Label": "outcount.r*.1D",
         "AtLocation": "outcount.r*.1D",
         "digest": {
@@ -265,25 +265,25 @@
         }
       },
       {
-        "@id": "urn:5818684f-eb4f-4926-ab68-239aef10f315",
+        "@id": "urn:7fdc5bc0-acd0-4ffa-bcf3-ff4fbe525b0a",
         "Label": "outcount.r$run.1D",
         "AtLocation": "outcount.r$run.1D",
-        "GeneratedBy": "urn:e65f3ff3-df11-4c71-98a9-d653b6e20e63",
+        "GeneratedBy": "urn:f97e9638-f9aa-4f35-8225-62aeaa38350d",
         "digest": {
           "sha256": "63d9f539e5470badc625d557109f68bc4eecbb02ca2667483739d52f95e5d0dd"
         }
       },
       {
-        "@id": "urn:33ff81af-1444-46c3-a060-f926d0ced8ae",
+        "@id": "urn:72b01569-8026-4ef1-9dd6-5d6da3f48b07",
         "Label": "outcount_rall.1D",
         "AtLocation": "outcount_rall.1D",
-        "GeneratedBy": "urn:e65f3ff3-df11-4c71-98a9-d653b6e20e63",
+        "GeneratedBy": "urn:f97e9638-f9aa-4f35-8225-62aeaa38350d",
         "digest": {
           "sha256": "cb887fd5e4d5e9acb3a24820d0f7a62ed38a5ffb0fdedd373440ac0219fb186a"
         }
       },
       {
-        "@id": "urn:2601600d-77ad-47b1-943f-527dce2f3c41",
+        "@id": "urn:2ccd78dd-e38b-4537-a039-90c1a17501fb",
         "Label": "pb00.$subj.r$run.tcat",
         "AtLocation": "pb00.$subj.r$run.tcat+orig",
         "digest": {
@@ -291,16 +291,16 @@
         }
       },
       {
-        "@id": "urn:39fdeb1b-1b9e-48d6-967e-ba216bc07d04",
+        "@id": "urn:6707d5a3-8854-4f88-ab6c-0084ee707e1b",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift",
-        "GeneratedBy": "urn:5a8ac39b-1335-4c41-889f-60783a5e2b84",
+        "GeneratedBy": "urn:58a1acaf-fb60-40ba-9f05-b1c92504a557",
         "digest": {
           "sha256": "c6bf01cea8d2eac1d7a866f80b865c6e7d4b4e012dbb63d480ac9a8551162d72"
         }
       },
       {
-        "@id": "urn:48daa469-7980-4aef-8da7-ad179b504481",
+        "@id": "urn:6c0ab2a1-6f09-42c4-b49e-b121ea859c78",
         "Label": "sub-01_T1w",
         "AtLocation": "sub-01_T1w+orig",
         "digest": {
@@ -308,7 +308,7 @@
         }
       },
       {
-        "@id": "urn:1abaf4b3-3b8b-47a5-9bef-ea9e15727931",
+        "@id": "urn:6c55e71b-8928-46d6-9877-d304c2ba90b8",
         "Label": "pb01.$subj.r01.tshift",
         "AtLocation": "pb01.$subj.r01.tshift+orig",
         "digest": {
@@ -316,16 +316,16 @@
         }
       },
       {
-        "@id": "urn:840c5d90-84c3-412a-ae8d-5b5b8af3c28a",
+        "@id": "urn:9d232fd0-6a0b-4719-af89-0d818156ab32",
         "Label": "_al_junk",
         "AtLocation": "_al_junk",
-        "GeneratedBy": "urn:d9466a6c-9b6f-4bf0-9164-e9ea186ea434",
+        "GeneratedBy": "urn:da1814d2-4009-410a-bd5a-8ad1af6ec820",
         "digest": {
           "sha256": "bd785a075a4c6446e1e54de9e628913f7f1c814e86b69a9fbfe933209e6d37b5"
         }
       },
       {
-        "@id": "urn:c72a767c-6c04-48a4-840f-8f8fce9c046f",
+        "@id": "urn:35737c62-7629-4ffd-8d4e-5701ddd34404",
         "Label": "TT_N27",
         "AtLocation": "TT_N27+tlrc",
         "digest": {
@@ -333,7 +333,7 @@
         }
       },
       {
-        "@id": "urn:8ddb5caa-1d83-4fa7-81bc-bc33c94e9de0",
+        "@id": "urn:aa87fcd7-0433-478a-9db1-162ff31d7582",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+orig",
         "digest": {
@@ -341,7 +341,7 @@
         }
       },
       {
-        "@id": "urn:f48bc076-8f2e-47d0-b651-3a12200ba777",
+        "@id": "urn:4fb3b843-49bb-41d9-95af-7ab01880f2fa",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -349,16 +349,16 @@
         }
       },
       {
-        "@id": "urn:63ad4bc7-4d97-46bc-b872-48b4e3cc971d",
+        "@id": "urn:b7981c4c-caca-48bd-8760-5fe3b612c1f6",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:54a4c888-fa93-41c0-873a-cc43fff460c0",
+        "GeneratedBy": "urn:ab05a81a-6316-4ff1-aa5b-f65dc614b38e",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:f48bc076-8f2e-47d0-b651-3a12200ba777",
+        "@id": "urn:4fb3b843-49bb-41d9-95af-7ab01880f2fa",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc::WARP_DATA",
         "digest": {
@@ -366,16 +366,16 @@
         }
       },
       {
-        "@id": "urn:63ad4bc7-4d97-46bc-b872-48b4e3cc971d",
+        "@id": "urn:b7981c4c-caca-48bd-8760-5fe3b612c1f6",
         "Label": "warp.anat.Xat.1D",
         "AtLocation": "warp.anat.Xat.1D",
-        "GeneratedBy": "urn:54a4c888-fa93-41c0-873a-cc43fff460c0",
+        "GeneratedBy": "urn:ab05a81a-6316-4ff1-aa5b-f65dc614b38e",
         "digest": {
           "sha256": "800633fb5b4e9be64078bc181c4d5510ffb73fc5cccaf364c7fb6a294aa06728"
         }
       },
       {
-        "@id": "urn:30934d7f-fa54-4dc4-92c2-0692dcc79bf8",
+        "@id": "urn:2eb65be7-2c3d-451f-a186-14e31708f86e",
         "Label": "pb01.$subj.r$run.tshift",
         "AtLocation": "pb01.$subj.r$run.tshift+orig",
         "digest": {
@@ -383,7 +383,7 @@
         }
       },
       {
-        "@id": "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af",
+        "@id": "urn:8885981b-cea7-4492-920a-1e5a26cbb875",
         "Label": "sub-01_T1w_ns",
         "AtLocation": "sub-01_T1w_ns+tlrc",
         "digest": {
@@ -391,7 +391,7 @@
         }
       },
       {
-        "@id": "urn:35351fd9-63f9-465b-8b5f-9d5214224587",
+        "@id": "urn:a5e6ae32-cb04-46f9-a999-7d0ebd8b8db9",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1+orig",
         "digest": {
@@ -399,7 +399,7 @@
         }
       },
       {
-        "@id": "urn:cc63cbf1-a938-4f36-94b0-28d7334c06ff",
+        "@id": "urn:92c3e4de-0ff4-4a84-bb19-096b59a10c02",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run+tlrc",
         "digest": {
@@ -407,7 +407,7 @@
         }
       },
       {
-        "@id": "urn:d5c97dfd-bc9a-4c8f-bd4f-fa5162003600",
+        "@id": "urn:f4b9999c-6136-49d0-97a3-0d20890a86bc",
         "Label": "dfile.r*.1D",
         "AtLocation": "dfile.r*.1D",
         "digest": {
@@ -415,7 +415,7 @@
         }
       },
       {
-        "@id": "urn:1bea0f51-9adc-43ee-8606-9199fe51d37c",
+        "@id": "urn:9d037f7f-4ce3-489d-8b6b-c277d8fa285d",
         "Label": "rm.epi.min.r01",
         "AtLocation": "rm.epi.min.r01+tlrc",
         "digest": {
@@ -423,7 +423,7 @@
         }
       },
       {
-        "@id": "urn:d2d3e2a4-d1c8-4526-981d-515d6e512abc",
+        "@id": "urn:e3c57f2e-612b-41d6-aff1-30c850c84548",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run+tlrc",
         "digest": {
@@ -431,7 +431,7 @@
         }
       },
       {
-        "@id": "urn:b38636c2-8db1-4744-9952-28a75ff3368d",
+        "@id": "urn:2d85d493-2f98-4769-b7f5-6f0388debfec",
         "Label": "mask_epi_extents",
         "AtLocation": "mask_epi_extents+tlrc",
         "digest": {
@@ -439,97 +439,97 @@
         }
       },
       {
-        "@id": "urn:bfc94b09-104e-4f77-bc9c-6a254b2b3237",
+        "@id": "urn:15f66ca8-51cf-4e03-a671-0c6fb39383a9",
         "Label": "mat.r$run.vr.aff12.1D",
         "AtLocation": "mat.r$run.vr.aff12.1D",
-        "GeneratedBy": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
+        "GeneratedBy": "urn:dfb9f380-0298-4b23-ae00-e32307060785",
         "digest": {
           "sha256": "2e6e6c2ce8089cfa3c6e11dc72fca0cc8497f7a55faae2ced402de4867466c91"
         }
       },
       {
-        "@id": "urn:741a7638-5305-4e8c-b932-63bbac46e5b4",
+        "@id": "urn:e05b6219-dbc9-429f-9a68-34756ef5ca1c",
         "Label": "rm.epi.all1",
         "AtLocation": "rm.epi.all1",
-        "GeneratedBy": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
+        "GeneratedBy": "urn:dfb9f380-0298-4b23-ae00-e32307060785",
         "digest": {
           "sha256": "1023e3c16cecdbdc73ea456bcf33c2e5bb4f1e07094b73d29022d651e5fa3f85"
         }
       },
       {
-        "@id": "urn:96d45e7e-9830-4d18-bab2-b0968b5f6d40",
+        "@id": "urn:ddefe5b8-47af-466b-a3e5-99a98409d213",
         "Label": "rm.epi.nomask.r$run",
         "AtLocation": "rm.epi.nomask.r$run",
-        "GeneratedBy": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
+        "GeneratedBy": "urn:dfb9f380-0298-4b23-ae00-e32307060785",
         "digest": {
           "sha256": "03d6cba0426c5545e350e6b63a19b0e46f8dfa2223fd08691753e8914a479e36"
         }
       },
       {
-        "@id": "urn:1d237c07-a52d-4a05-81d5-bbabc95bf4d5",
+        "@id": "urn:98d88eec-e2d8-4c04-bb1d-21ecf1ee3ec5",
         "Label": "rm.epi.1.r$run",
         "AtLocation": "rm.epi.1.r$run",
-        "GeneratedBy": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
+        "GeneratedBy": "urn:dfb9f380-0298-4b23-ae00-e32307060785",
         "digest": {
           "sha256": "b1b9128c103ea246625db1a35e6f474a221ca6c1105a30df38aefdc4d5421e84"
         }
       },
       {
-        "@id": "urn:8270d8d8-058e-45d1-bcc6-2073d90606e5",
+        "@id": "urn:425c4eaf-5898-4b58-b1fe-dbbad201a4ff",
         "Label": "rm.epi.min.r$run",
         "AtLocation": "rm.epi.min.r$run",
-        "GeneratedBy": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
+        "GeneratedBy": "urn:dfb9f380-0298-4b23-ae00-e32307060785",
         "digest": {
           "sha256": "b4418a96ddbbf25afdfd01ed0506ddebe009011ba18aed10137f994260fd1a66"
         }
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         "digest": {
           "sha256": "431314eb75d086ce08373b3a374427969e89414c4a2d607e449c1f6485c547af"
         }
       },
       {
-        "@id": "urn:1f3aa16c-dba5-4a6a-be1f-070a6dd46a7c",
+        "@id": "urn:eb2fbfd5-efce-4bb4-bd6b-08abdbc8d5d7",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "303f183145a1e295686c08335d3b70753777cf0fa0b3f9628cf8de5471359a00"
         }
       },
       {
-        "@id": "urn:cffb91c8-2c95-46ce-b44f-baf44b7e488d",
+        "@id": "urn:73db4a10-3bfe-43d0-9fcf-1760c0d6cebe",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
         }
       },
       {
-        "@id": "urn:184be230-ca69-44e0-b9d5-937d940c1349",
+        "@id": "urn:5e825379-dd75-4fd3-b024-ce9fa7388864",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "dac304c9f20899ca1ef5aa403e565345fd0ff4ed80c35f82007c9b03a68292b3"
         }
       },
       {
-        "@id": "urn:57479980-7201-4d14-9ce3-a5f778c62ba1",
+        "@id": "urn:d8be2762-fa93-4e54-8cee-c1cf4627ab75",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "06a0bfbc609c1a06ecf93c479a3288d2911c7f5f3e93cf49c5d26f721c2035ed"
         }
       },
       {
-        "@id": "urn:a2408b33-ec25-4dc5-8fee-7718d02a4182",
+        "@id": "urn:61ad2da1-fa96-453d-8ea2-ffdaf4e76f3f",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
         }
       },
       {
-        "@id": "urn:11378299-046e-469a-8dd0-04997311c70f",
+        "@id": "urn:60479ac6-9e5e-4a5c-8257-cb26169c528f",
         "Label": "ideal_tone_counting.1D",
         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "9bb1cabac5ce7ca19dffa5cd6336a9bf82d362fea2ce9341978406e421b5333c"
         }
       },
       {
-        "@id": "urn:9b5c6e54-fbf8-4532-9adb-d5c75ab11be0",
+        "@id": "urn:90893caa-32b8-4511-93fb-6411b6cc68cd",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "705d93afa8b6ded9f4f572db3f967b54e9906942669af51dd8287a9863bb4288"
         }
       },
       {
-        "@id": "urn:9861b3fa-f459-4b8e-b56f-00916d10574d",
+        "@id": "urn:f6b49186-f762-42bb-858b-0b2f705f8bb9",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:77c559d3-63ce-44f4-bb26-91c7ddbe62f6",
+        "@id": "urn:452f975b-e651-438e-855c-e598c87cc913",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:46d2d540-a591-40b0-85f4-6d99a9fd34cb",
+        "GeneratedBy": "urn:f06f0cd0-c920-4118-abcc-82ff1f172949",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
+        "@id": "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
         }
       },
       {
-        "@id": "urn:fd0b7203-0967-4d90-95ec-24ef3e0696f9",
+        "@id": "urn:458d4e4d-f2a2-474f-a12e-e68162d06b49",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:0019adae-0fa4-4e8f-8824-8ecb74ced688",
+        "GeneratedBy": "urn:c6afac70-e344-4d7e-b579-c052fba1a77f",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:59104013-7df9-4454-925f-bdb123c22844",
+        "@id": "urn:9135d6df-2975-4abd-8177-670967e8e744",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:0019adae-0fa4-4e8f-8824-8ecb74ced688",
+        "GeneratedBy": "urn:c6afac70-e344-4d7e-b579-c052fba1a77f",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:a63a5415-2d86-4ea7-995b-f862b8f47f9a",
+        "@id": "urn:28f7dfc8-ec0e-4a14-9234-681d2536b95a",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:0019adae-0fa4-4e8f-8824-8ecb74ced688",
+        "GeneratedBy": "urn:c6afac70-e344-4d7e-b579-c052fba1a77f",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:7564cc1a-4e3d-4126-ba65-335ca4eb7193",
+        "@id": "urn:8b944e7f-652b-453c-9868-e2dd5303bb49",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:9d7819db-957f-415a-890b-f1b8d9dbd88c",
+        "@id": "urn:4eb45450-e358-46a7-86ee-cfdb9902415e",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:19f90103-0415-4e89-9031-04bc863b9076",
+        "GeneratedBy": "urn:88fa4f58-2669-4fbd-8716-253871594873",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/afni_thr_voxelunct4_proc.jsonld b/examples/from_parsers/afni/afni_thr_voxelunct4_proc.jsonld
index 773aa301e..9bafb7c8e 100644
--- a/examples/from_parsers/afni/afni_thr_voxelunct4_proc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_voxelunct4_proc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "@id": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,569 +13,569 @@
     ],
     "Activities": [
       {
-        "@id": "urn:c9fd7c76-2ae4-45b3-878b-40d9bad11085",
+        "@id": "urn:a1805d3b-baeb-4707-b217-71a4d28ace1b",
         "Label": "Make directory",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "mkdir $output_dir",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:1bdaaef0-7042-4734-8cfd-098e9962a533",
+        "@id": "urn:64758879-6b04-479d-8021-1385b8b85587",
         "Label": "Make directory",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "mkdir $output_dir/stimuli",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:95c94be2-273b-4c7d-8a39-1ce112181183",
+        "@id": "urn:3190be3b-d808-4789-a6b2-90c5db0bb314",
         "Label": "cp",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "cp ./afni_voxelwise_t4/tone_counting_onset_times.txt ./afni_voxelwise_t4/tone_counting_probe_duration.txt $output_dir/stimuli",
         "Parameters": {},
         "Used": [
-          "urn:69fcfb15-c77c-40c4-a487-3ad726504cfb",
-          "urn:d448379e-f728-47d2-9567-f7ba106cd541"
+          "urn:d8d7376b-a591-4123-974d-081e6e33896a",
+          "urn:f0423d9e-54a2-4f80-a53f-e1dd94b3a947"
         ]
       },
       {
-        "@id": "urn:ab4d3e7f-fd6c-4189-a5dd-b726f1e3eaab",
+        "@id": "urn:2be229a2-3fbe-4acb-9aaf-e280530aa938",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w",
         "Parameters": {},
         "Used": [
-          "urn:3d997e80-8feb-4949-9ca6-5f2e3bd68fc6"
+          "urn:454dc845-1967-46e8-9b90-69b929477b23"
         ]
       },
       {
-        "@id": "urn:3e718433-e2b5-434d-a596-249413698da1",
+        "@id": "urn:4963497e-481b-4679-a1f7-425b747b8db9",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'",
         "Parameters": {},
         "Used": [
-          "urn:916a0919-3412-4ed1-b4b5-ea6838d333b7"
+          "urn:bade994c-bfbf-48ef-952e-593582deab90"
         ]
       },
       {
-        "@id": "urn:918fcb03-359d-488c-bb96-5b75f21afc6b",
+        "@id": "urn:198081c3-d54d-4afa-8c05-56a43bd2ec90",
         "Label": "3dToutcount",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D",
         "Parameters": {},
         "Used": [
-          "urn:f8a81771-0ea9-47d0-8c3e-b3482efcb7a4"
+          "urn:8d068463-26b0-4236-8937-fcb1118a01eb"
         ]
       },
       {
-        "@id": "urn:e36979a0-f0bf-44cd-aadc-8b80d1ca6d10",
+        "@id": "urn:1bf86114-bffa-44fe-a6e3-93a863200efc",
         "Label": "cat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "cat outcount.r*.1D > outcount_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:1e927d75-77b7-4b4e-baef-e3ee46d7b843"
+          "urn:59f3a66a-275b-4a37-8479-b063366c1072"
         ]
       },
       {
-        "@id": "urn:5bbeda84-ea59-4602-8539-b4825125464d",
+        "@id": "urn:8154353f-62f4-4f33-a5e0-b25cfb3e0bf4",
         "Label": "3dTshift",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig",
         "Parameters": {},
         "Used": [
-          "urn:f8a81771-0ea9-47d0-8c3e-b3482efcb7a4"
+          "urn:8d068463-26b0-4236-8937-fcb1118a01eb"
         ]
       },
       {
-        "@id": "urn:fe69b019-583c-4c4e-a2c3-63b4d352a94c",
+        "@id": "urn:91a429ee-f3b0-42e8-bec2-e8be934e327e",
         "Label": "align_epi_anat.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off",
         "Parameters": {},
         "Used": [
-          "urn:6b2dccb0-069c-4d61-91cb-9885fcb4a556",
-          "urn:06372779-6792-4e37-84d1-cd68357b7aed"
+          "urn:4a1f3cd3-d200-41dc-81d3-78b30258701e",
+          "urn:c73fa496-d31f-4802-97a4-ed7e422f2b73"
         ]
       },
       {
-        "@id": "urn:34938128-0ef3-4618-8817-c35f21e124a4",
+        "@id": "urn:aa7b2f0c-211d-402d-9e28-14a87872319f",
         "Label": "@auto_tlrc",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss",
         "Parameters": {},
         "Used": [
-          "urn:19459e8e-1991-490b-b90f-a18c3dc7528b",
-          "urn:39ea58bb-83ea-4c9e-8050-7adcf255c33d"
+          "urn:13d034fa-73d1-442e-a6c5-5225daf2683f",
+          "urn:faf886ff-9fee-4689-bf69-9d37f32c368c"
         ]
       },
       {
-        "@id": "urn:1dcfe420-527d-4cc2-8411-9c1433b5fdff",
+        "@id": "urn:6b561749-90cb-4ca3-b23e-29c9ffbe9085",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D",
         "Parameters": {},
         "Used": [
-          "urn:3b785f19-73bf-4c34-a038-7a9b4396a169"
+          "urn:a020ff0c-b5e2-4414-a32c-0791ca1dd749"
         ]
       },
       {
-        "@id": "urn:9514e444-af9c-4649-b1e3-f2b7371e2ff3",
+        "@id": "urn:6e528fd8-b78c-42f5-824d-5b4adbf88e5b",
         "Label": "3dvolreg",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig",
         "Parameters": {},
         "Used": [
-          "urn:70787460-c0e9-4624-a974-df03ea059fd7"
+          "urn:34aa4304-4007-4181-a467-db010e088b05"
         ]
       },
       {
-        "@id": "urn:bbdd547f-1200-4863-9dda-efa4d1e55184",
+        "@id": "urn:588a7629-618c-407b-ba9b-2f1ecac124d7",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1",
         "Parameters": {},
         "Used": [
-          "urn:70787460-c0e9-4624-a974-df03ea059fd7"
+          "urn:34aa4304-4007-4181-a467-db010e088b05"
         ]
       },
       {
-        "@id": "urn:0c6b3aeb-06f8-4e6b-b3ed-88acdbf9e0e6",
+        "@id": "urn:acd0d873-2205-4bcf-8552-465bb5afba1f",
         "Label": "cat_matvec",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D",
         "Parameters": {},
         "Used": [
-          "urn:3b785f19-73bf-4c34-a038-7a9b4396a169"
+          "urn:a020ff0c-b5e2-4414-a32c-0791ca1dd749"
         ]
       },
       {
-        "@id": "urn:cfc270b2-011d-4313-9bf2-42cf99099862",
+        "@id": "urn:c650b95a-c9bf-4612-b47a-eedf376d79f9",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run",
         "Parameters": {},
         "Used": [
-          "urn:63697e02-287b-45a2-bb20-41e265601261",
-          "urn:70787460-c0e9-4624-a974-df03ea059fd7",
-          "urn:eb67c517-fe9a-4f7c-b7b0-36247be03247"
+          "urn:34aa4304-4007-4181-a467-db010e088b05",
+          "urn:7365d26e-619c-4e80-a058-964fa937d9e5",
+          "urn:8f99c180-e872-4b3d-b928-89da81c3d281"
         ]
       },
       {
-        "@id": "urn:eba38419-a546-4321-8e0a-8f3a41271a29",
+        "@id": "urn:17c44a15-af08-4f20-80dc-8d6a00fb19a0",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run",
         "Parameters": {},
         "Used": [
-          "urn:63697e02-287b-45a2-bb20-41e265601261",
-          "urn:bcdad7b0-1900-445e-a58d-7cdbd0dd9cfc",
-          "urn:eb67c517-fe9a-4f7c-b7b0-36247be03247"
+          "urn:535bc829-b0d7-4089-a924-ada0c271af18",
+          "urn:7365d26e-619c-4e80-a058-964fa937d9e5",
+          "urn:8f99c180-e872-4b3d-b928-89da81c3d281"
         ]
       },
       {
-        "@id": "urn:e8191e7e-8505-4e9d-afc8-41e2324eb4dc",
+        "@id": "urn:308ee1ba-15be-4db5-a4f2-9e4ad49adee8",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:53f02519-829b-4f61-9838-40048b816257"
+          "urn:f19f51ad-5e08-412b-b80a-9023c70693b4"
         ]
       },
       {
-        "@id": "urn:8dc8374c-cbe1-47f8-9d6a-39ae8a5ebb34",
+        "@id": "urn:0571739d-afb1-4fc4-85a8-64b608b3ddc1",
         "Label": "cat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "cat dfile.r*.1D > dfile_rall.1D",
         "Parameters": {},
         "Used": [
-          "urn:df826b1c-74a5-4f67-be42-d15657ccada8"
+          "urn:8fff7e64-4f79-487c-8d5e-d71cf1c63f20"
         ]
       },
       {
-        "@id": "urn:c6aa20f8-dfc4-434c-b06e-e6740edb0f2e",
+        "@id": "urn:ac0a1582-d0e6-4c06-8f3c-f7e2371d9d71",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dcopy rm.epi.min.r01+tlrc mask_epi_extents",
         "Parameters": {},
         "Used": [
-          "urn:5ec304ae-9211-417c-9b97-ef828474c68b"
+          "urn:d2838435-2817-4d99-8c5e-4adbd8852f73"
         ]
       },
       {
-        "@id": "urn:cdeffd5b-2823-49f0-9667-028119716d19",
+        "@id": "urn:e0673b5d-bc02-467e-9f5a-8466ab995bf5",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg",
         "Parameters": {},
         "Used": [
-          "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
-          "urn:d2bdd17d-7e8f-4856-b026-90a880f4ba20"
+          "urn:a0b6b6d8-e7c9-4497-8f03-00bb7ea256c8",
+          "urn:cffb91c8-2c95-46ce-b44f-baf44b7e488d"
         ]
       },
       {
-        "@id": "urn:a878b257-a9ba-4bcb-bec8-cff004db2580",
+        "@id": "urn:51561c54-ad75-499d-9aa7-1cb5ab17a577",
         "Label": "3dcopy",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dcopy sub-01_T1w_ns+tlrc anat_final.$subj",
         "Parameters": {},
         "Used": [
-          "urn:63697e02-287b-45a2-bb20-41e265601261"
+          "urn:7365d26e-619c-4e80-a058-964fa937d9e5"
         ]
       },
       {
-        "@id": "urn:0d96712d-754c-4811-b72f-475acab451eb",
+        "@id": "urn:184be230-ca69-44e0-b9d5-937d940c1349",
         "Label": "3dAllineate",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped",
         "Parameters": {},
         "Used": [
-          "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60"
+          "urn:0a80926c-2513-4239-bf14-d648691c34ee"
         ]
       },
       {
-        "@id": "urn:2b5a4047-ae13-4ad8-a91e-4bbedd00ee70",
+        "@id": "urn:d4cb83cd-6bf6-48e2-955f-122e6d0a0439",
         "Label": "3dmerge",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:c0c5482a-7a18-4535-99df-1f2f4b42155f",
-          "urn:ad783a8d-3eff-4062-aaaa-b0da2153285b"
+          "urn:57479980-7201-4d14-9ce3-a5f778c62ba1",
+          "urn:b2713b64-ed9c-4912-bde1-97d522fcdadb"
         ]
       },
       {
-        "@id": "urn:ba73f7d7-f70a-4503-aafa-a70b10d74b93",
+        "@id": "urn:238b43bf-8fe0-40ba-a54d-1954ced0274f",
         "Label": "3dAutomask",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:ecb6bbdc-7c07-4bf7-aab1-114ab87660c3"
+          "urn:a2408b33-ec25-4dc5-8fee-7718d02a4182"
         ]
       },
       {
-        "@id": "urn:300db58b-407a-44d5-a5bc-4ae178718157",
+        "@id": "urn:95f9e98f-16a1-4203-add4-aa09068c95cc",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:5b0ca4be-398b-4a17-bcfd-4979613d6409",
+        "@id": "urn:6dfbc9e7-edf1-4dfb-8913-3084e1f1b1d5",
         "Label": "3dresample",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat",
         "Parameters": {},
         "Used": [
-          "urn:63697e02-287b-45a2-bb20-41e265601261",
-          "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
+          "urn:7365d26e-619c-4e80-a058-964fa937d9e5",
+          "urn:9b5c6e54-fbf8-4532-9adb-d5c75ab11be0"
         ]
       },
       {
-        "@id": "urn:c5da5238-d255-4788-8c65-a97fbad74c2e",
+        "@id": "urn:e29d8494-1287-4ba6-a240-13d062db51c0",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj",
         "Parameters": {},
         "Used": [
-          "urn:c0b2dc25-6399-41b4-8c90-2115b9a9c877"
+          "urn:9861b3fa-f459-4b8e-b56f-00916d10574d"
         ]
       },
       {
-        "@id": "urn:298d54e4-1c6b-48c3-94f7-7d82fa1b91b7",
+        "@id": "urn:ab2e43b9-23a9-4498-b928-4a757cf4c869",
         "Label": "3dABoverlap",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt",
         "Parameters": {},
         "Used": [
-          "urn:110ea3e4-213d-4c0f-b3d4-095ffe94e454",
-          "urn:9cc3040c-923c-4223-bcdc-65e44e3724df"
+          "urn:77c559d3-63ce-44f4-bb26-91c7ddbe62f6",
+          "urn:db45e346-70b9-4be1-8d3c-be40c2aa586b"
         ]
       },
       {
-        "@id": "urn:afb793a2-e11b-40df-bbab-7c55f13dce6f",
+        "@id": "urn:9c6482f8-d86c-42e8-887e-a01c650d7f9d",
         "Label": "3ddot",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt",
         "Parameters": {},
         "Used": [
-          "urn:110ea3e4-213d-4c0f-b3d4-095ffe94e454",
-          "urn:9cc3040c-923c-4223-bcdc-65e44e3724df"
+          "urn:77c559d3-63ce-44f4-bb26-91c7ddbe62f6",
+          "urn:db45e346-70b9-4be1-8d3c-be40c2aa586b"
         ]
       },
       {
-        "@id": "urn:b3713446-96d2-4b62-bbdd-2a210b8dcc5a",
+        "@id": "urn:3199161a-bb31-491f-bd82-4b3283c53d48",
         "Label": "3dresample",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:c63f6bf6-7480-414e-a8fb-7a1c37996839",
-          "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
+          "urn:59104013-7df9-4454-925f-bdb123c22844",
+          "urn:9b5c6e54-fbf8-4532-9adb-d5c75ab11be0"
         ]
       },
       {
-        "@id": "urn:9c4e2e74-846d-4682-a86d-4fa43b9361c7",
+        "@id": "urn:a63a5415-2d86-4ea7-995b-f862b8f47f9a",
         "Label": "3dmask_tool",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group",
         "Parameters": {},
         "Used": [
-          "urn:b052d775-addc-449b-a406-368acd0aaa97"
+          "urn:192e03df-9cbd-4758-a519-d36f7449d11e"
         ]
       },
       {
-        "@id": "urn:fd503d11-d2f7-4355-8724-cf332ba8f69b",
+        "@id": "urn:6095f7d1-7e5e-483d-bf1a-5a4838cc9152",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc",
         "Parameters": {},
         "Used": [
-          "urn:ecb6bbdc-7c07-4bf7-aab1-114ab87660c3"
+          "urn:a2408b33-ec25-4dc5-8fee-7718d02a4182"
         ]
       },
       {
-        "@id": "urn:92e806a1-588a-400a-8267-1d331938bd79",
+        "@id": "urn:4abf85b0-30e5-4e03-92bb-35fd73da6f1d",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale",
         "Parameters": {},
         "Used": [
-          "urn:ecb6bbdc-7c07-4bf7-aab1-114ab87660c3",
-          "urn:746a6f07-d57a-4b68-884b-13ab76184159",
-          "urn:d2bdd17d-7e8f-4856-b026-90a880f4ba20"
+          "urn:5a8ac39b-1335-4c41-889f-60783a5e2b84",
+          "urn:a2408b33-ec25-4dc5-8fee-7718d02a4182",
+          "urn:cffb91c8-2c95-46ce-b44f-baf44b7e488d"
         ]
       },
       {
-        "@id": "urn:24c48049-423b-4f4a-a68b-63c3d0593e99",
+        "@id": "urn:17f60b95-1e29-42f6-9f58-15348ca2b014",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D",
         "Parameters": {},
         "Used": [
-          "urn:938163b7-bf0d-40c8-8a24-9c77029d9a41"
+          "urn:30df620a-6022-4cb7-8b04-92b6ee439617"
         ]
       },
       {
-        "@id": "urn:78b84e7b-706b-4025-b3d4-5ef478ebf581",
+        "@id": "urn:f21f492c-1ded-461d-a8ba-11cf5b61aacf",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D",
         "Parameters": {},
         "Used": [
-          "urn:938163b7-bf0d-40c8-8a24-9c77029d9a41"
+          "urn:30df620a-6022-4cb7-8b04-92b6ee439617"
         ]
       },
       {
-        "@id": "urn:eabf2d58-12bc-4264-9a14-841b35d36c2e",
+        "@id": "urn:19f90103-0415-4e89-9031-04bc863b9076",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}",
         "Parameters": {},
         "Used": [
-          "urn:938163b7-bf0d-40c8-8a24-9c77029d9a41"
+          "urn:30df620a-6022-4cb7-8b04-92b6ee439617"
         ]
       },
       {
-        "@id": "urn:dd7c30e9-086f-4453-b4e0-cfd2dd378337",
+        "@id": "urn:99bcea95-afc5-45e7-88a1-4cbbc4a5fe50",
         "Label": "3dDeconvolve",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj",
         "Parameters": {},
         "Used": [
-          "urn:51fd66c2-887c-4586-9153-c4330b011c21"
+          "urn:423da7a2-7b60-42aa-b8ab-02fed4206f6d"
         ]
       },
       {
-        "@id": "urn:86fd4be2-654d-4f6d-8dcf-1c8eaf851151",
+        "@id": "urn:3e1129c4-1668-4d2a-86a6-ec65ba4cdf22",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt",
         "Parameters": {},
         "Used": [
-          "urn:c92f09a2-3673-461a-b213-7e6e77ae9127"
+          "urn:59a1ea45-0220-470e-939b-f58dd721e19d"
         ]
       },
       {
-        "@id": "urn:f8cbfb50-209b-45f0-af1c-cb1e8654524f",
+        "@id": "urn:4eb29210-41a9-45a5-96b6-1222aa0ae290",
         "Label": "3dTcat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD",
         "Parameters": {},
         "Used": [
-          "urn:51fd66c2-887c-4586-9153-c4330b011c21"
+          "urn:423da7a2-7b60-42aa-b8ab-02fed4206f6d"
         ]
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-        "@id": "urn:cda9ebcc-abd5-4d2a-b0dc-3b2680aa1967",
+        "@id": "urn:ae9cf233-1cae-4123-a0a2-7d87c41578fa",
         "Label": "3dTstat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:40b50dc9-2f0a-4a54-8f74-308039d60ecd"
+          "urn:ec5adfc3-1f39-4145-a708-6aaee3ff4ea1"
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       {
-        "@id": "urn:af761f7e-80af-4622-bb60-411065c9e5d1",
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"",
         "Parameters": {},
         "Used": [
-          "urn:4ce7cdba-5a0b-4246-8ee3-840b44f92bf6"
+          "urn:884190c2-d08b-4691-a22d-6a606a505216"
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         "Label": "3dcalc",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
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         "Used": [
-          "urn:80fcdacd-a0b4-41a5-a625-30221b6d3350",
-          "urn:92d99567-2e04-4755-84bf-14cd9ef1de78",
-          "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
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-        "@id": "urn:c073483a-c70c-494e-bc37-5a2327064f06",
+        "@id": "urn:ffda532d-a9a3-4afe-ae56-0c197afed2e5",
         "Label": "3dTnorm",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
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         "Parameters": {},
         "Used": [
-          "urn:9b4436bc-3b0f-4b8f-ba17-18aac004a520"
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         "Label": "3dTstat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
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         "Used": [
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-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
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-          "urn:1da351b2-5bea-4433-a57f-1ed0437d697f"
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-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
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         "Used": [
-          "urn:25fc6c6e-026b-4ab5-b54f-ab765a104838"
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-          "urn:4b941985-5a56-41fe-bdf5-274158f7437c"
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-          "urn:a92420ab-a033-4844-a6f7-39500db2e482"
+          "urn:e2e2d08d-3f8e-4b33-878c-67d75e93a4fa"
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         "Label": "1dcat",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D",
         "Parameters": {},
         "Used": [
-          "urn:a92420ab-a033-4844-a6f7-39500db2e482"
+          "urn:e2e2d08d-3f8e-4b33-878c-67d75e93a4fa"
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         "Label": "3dFWHMx",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D",
         "Parameters": {},
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-          "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
+          "urn:9b5c6e54-fbf8-4532-9adb-d5c75ab11be0"
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         "Parameters": {},
         "Used": [
-          "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
+          "urn:9b5c6e54-fbf8-4532-9adb-d5c75ab11be0"
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         "Label": "3dClustSim",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
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         "Parameters": {},
         "Used": [
-          "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
+          "urn:9b5c6e54-fbf8-4532-9adb-d5c75ab11be0"
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+        "@id": "urn:6738197e-a379-44b2-9f89-57fa3f02ece2",
         "Label": "gen_epi_review.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
+        "AssociatedWith": "urn:f15fe524-f568-4e93-9286-fc790afe24eb",
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         "Used": [
-          "urn:fb2855e1-e166-43d1-82c1-370fde58b2ce"
+          "urn:05b977f9-3054-4c8c-bca4-36bab8c25375"
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         "Label": "gen_ss_review_scripts.py",
-        "AssociatedWith": "urn:108825b6-48c2-46ba-a0d2-5aaacfc59220",
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         "Parameters": {
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@@ -586,22 +586,22 @@
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-        "GeneratedBy": "urn:c9fd7c76-2ae4-45b3-878b-40d9bad11085",
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         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:1bdaaef0-7042-4734-8cfd-098e9962a533"
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         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_voxelwise_t4/tone_counting_onset_times.txt",
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@@ -609,7 +609,7 @@
         }
       },
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+        "@id": "urn:d8d7376b-a591-4123-974d-081e6e33896a",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_voxelwise_t4/tone_counting_probe_duration.txt",
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@@ -617,13 +617,13 @@
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+        "@id": "urn:d33474de-c1e1-4d6c-a0f2-db992f31c561",
         "Label": "stimuli",
         "AtLocation": "$output_dir/stimuli",
-        "GeneratedBy": "urn:95c94be2-273b-4c7d-8a39-1ce112181183"
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@@ -631,13 +631,13 @@
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@@ -645,13 +645,13 @@
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@@ -659,16 +659,16 @@
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-        "GeneratedBy": "urn:918fcb03-359d-488c-bb96-5b75f21afc6b",
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@@ -676,25 +676,25 @@
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@@ -702,7 +702,7 @@
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@@ -710,16 +710,16 @@
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@@ -1093,25 +1093,25 @@
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-        "@id": "urn:c92f09a2-3673-461a-b213-7e6e77ae9127",
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@@ -1119,16 +1119,16 @@
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-        "GeneratedBy": "urn:cda9ebcc-abd5-4d2a-b0dc-3b2680aa1967",
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-        "@id": "urn:4ce7cdba-5a0b-4246-8ee3-840b44f92bf6",
+        "@id": "urn:884190c2-d08b-4691-a22d-6a606a505216",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc\"[$ktrs]\"",
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@@ -1136,16 +1136,16 @@
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-        "@id": "urn:e96a44c6-cc86-4fbd-80b1-ea93ccb3d990",
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@@ -1153,7 +1153,7 @@
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         "Label": "rm.noise.all",
         "AtLocation": "rm.noise.all+tlrc",
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@@ -1161,16 +1161,16 @@
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-        "@id": "urn:b8c7e4ee-449e-490e-bb35-95baf776b6c0",
+        "@id": "urn:ce66913e-b094-471b-bcc6-d99a9b2baac6",
         "Label": "TSNR.$subj",
         "AtLocation": "TSNR.$subj",
-        "GeneratedBy": "urn:e6aad8a6-9056-4e8e-b591-ba2a4094b8a0",
+        "GeneratedBy": "urn:c86b2317-ab5f-4ba3-afa9-3fbd93c338eb",
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       {
-        "@id": "urn:9b4436bc-3b0f-4b8f-ba17-18aac004a520",
+        "@id": "urn:ad54aeea-950d-4781-96b7-9042c66660de",
         "Label": "errts.${subj}",
         "AtLocation": "errts.${subj}+tlrc",
         "digest": {
@@ -1178,25 +1178,25 @@
         }
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       {
-        "@id": "urn:0a7647fc-2cdc-4fa3-b082-e96971482634",
+        "@id": "urn:6f6cc0d2-9b58-407b-8c51-732f0dbaaeda",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit",
-        "GeneratedBy": "urn:c073483a-c70c-494e-bc37-5a2327064f06",
+        "GeneratedBy": "urn:ffda532d-a9a3-4afe-ae56-0c197afed2e5",
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           "sha256": "03b570ad773a00f51ab7e6cdedfebdeca45f5356de0c25f9e3be44d7bf2c7151"
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-        "@id": "urn:1da351b2-5bea-4433-a57f-1ed0437d697f",
+        "@id": "urn:c9d09354-17e6-47d9-9ed7-be2474d8a292",
         "Label": "gmean.errts.unit.1D",
         "AtLocation": "gmean.errts.unit.1D",
-        "GeneratedBy": "urn:e6b65e1a-fafb-4bb5-965e-f7a176a560ff",
+        "GeneratedBy": "urn:6dac2074-75b1-4e6b-9f4a-37a6d6310631",
         "digest": {
           "sha256": "a35a66cce2e2d487762823c197ca1edc450a9887f46f125826b69c5021662f95"
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-        "@id": "urn:2a93e9d8-8d47-40af-8bcf-eaf983b9add1",
+        "@id": "urn:f62083f2-8dde-4cc3-a24c-d446e46978ad",
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         "AtLocation": "out.gcor.1D",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
       },
       {
-        "@id": "urn:fa5a7811-b41a-413e-9cb5-a8ed8170aa68",
+        "@id": "urn:5470a0ab-86dc-40d7-b2c2-cf0cf4dbb0a8",
         "Label": "-",
         "AtLocation": "-",
-        "GeneratedBy": "urn:80f381a3-fcaa-49fb-885e-4debddb8a786",
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-        "@id": "urn:f8678749-7602-488a-9d3a-8f2490d6f419",
+        "@id": "urn:227413e0-9f8c-4ec6-8469-9de994444e70",
         "Label": "rm.errts.unit",
         "AtLocation": "rm.errts.unit+tlrc",
         "digest": {
@@ -1221,16 +1221,16 @@
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       {
-        "@id": "urn:b1d3f413-1a3f-4a66-8cee-b24bfdb8d5ea",
+        "@id": "urn:3a6084be-8807-4dd7-86f7-d691b36e7ef9",
         "Label": "rm.DP",
         "AtLocation": "rm.DP",
-        "GeneratedBy": "urn:c879c188-eaba-4d99-a76b-7031e921db86",
+        "GeneratedBy": "urn:e9aece2a-e134-463e-82bb-80691c416208",
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       {
-        "@id": "urn:25fc6c6e-026b-4ab5-b54f-ab765a104838",
+        "@id": "urn:fe451eab-ab28-4f5f-8e5f-98855e0ed4a8",
         "Label": "rm.DP",
         "AtLocation": "rm.DP+tlrc",
         "digest": {
@@ -1238,16 +1238,16 @@
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       },
       {
-        "@id": "urn:bfc5f78d-f8d3-4eee-8fd5-8835562215ba",
+        "@id": "urn:b5a35ff9-0434-42f2-9b5c-ef7669c25f2b",
         "Label": "corr_brain",
         "AtLocation": "corr_brain",
-        "GeneratedBy": "urn:075b19d7-cccb-49e7-a9c8-4a0abc906eab",
+        "GeneratedBy": "urn:413e1783-c57d-416f-9594-1b82ef39aa74",
         "digest": {
           "sha256": "74e3aeae0da338b871ab5dc9e8859a4e81fcf1b3c0042cd22fe337eb7baf5eae"
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       {
-        "@id": "urn:604a1e3b-15de-497b-a525-ca9bd99f2a09",
+        "@id": "urn:f32dd099-a3b9-4889-8fbb-8b2f4df56893",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[3]'",
         "digest": {
@@ -1255,16 +1255,16 @@
         }
       },
       {
-        "@id": "urn:7ab095d7-8d81-4df7-aa9f-2167bce867fc",
+        "@id": "urn:1164d63b-cf24-42cc-9f8f-c0ffaee54e74",
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         "AtLocation": "ideal_tone_counting.1D",
-        "GeneratedBy": "urn:d48a8eec-56b1-4aa8-af22-922fc27586e6",
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       {
-        "@id": "urn:4b941985-5a56-41fe-bdf5-274158f7437c",
+        "@id": "urn:619b94b1-3e0e-4b72-828a-317b7c6bebd4",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D'[4]'",
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@@ -1272,16 +1272,16 @@
         }
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       {
-        "@id": "urn:5f12525b-764a-4493-b764-0c8b7057963b",
+        "@id": "urn:0e8e8869-93db-4b86-8b5e-08ad3dc1982b",
         "Label": "ideal_probe.1D",
         "AtLocation": "ideal_probe.1D",
-        "GeneratedBy": "urn:c504956f-4b7b-4992-abbd-46b5fc4f8a21",
+        "GeneratedBy": "urn:af38b1c5-cfab-4f4c-a109-1cebae93f287",
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-        "@id": "urn:a92420ab-a033-4844-a6f7-39500db2e482",
+        "@id": "urn:e2e2d08d-3f8e-4b33-878c-67d75e93a4fa",
         "Label": "X.nocensor.xmat.1D",
         "AtLocation": "X.nocensor.xmat.1D\"[$reg_cols]\"",
         "digest": {
@@ -1289,52 +1289,52 @@
         }
       },
       {
-        "@id": "urn:ae3b0d12-52f4-48a2-88d4-0678d5f09e99",
+        "@id": "urn:88abf868-a869-49a3-8dc4-1b3553c7ce81",
         "Label": "sum_ideal.1D",
         "AtLocation": "sum_ideal.1D",
-        "GeneratedBy": "urn:d749afb2-7262-4434-9504-06cb313cac64",
+        "GeneratedBy": "urn:e78802d6-1bb2-429f-bd2e-590f9ca87a83",
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       {
-        "@id": "urn:ce793436-f751-49ce-83f6-51ec93dd4b41",
+        "@id": "urn:3ef5d45b-c17d-4f9d-8c55-18a52b42ee5d",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:a04f7934-f7bc-4170-b2eb-5c6c732b5848",
+        "GeneratedBy": "urn:79564ced-7998-4380-8c8f-3269d12b864f",
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       {
-        "@id": "urn:4ae332d7-a922-405f-badd-a8bf6db8669f",
+        "@id": "urn:11f9b53f-10ed-481a-bf7c-bb31594d0e05",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:314e11c6-9e73-48fd-80b8-5255796a06d1",
+        "GeneratedBy": "urn:493995db-4752-45aa-a7fe-8c271ece8525",
         "digest": {
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       {
-        "@id": "urn:35b68be2-b883-4bde-9698-c01bc4e682f7",
+        "@id": "urn:990a8e8f-1603-40d5-9b7e-89e4292d2808",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:a6811528-b35b-46f8-8c64-c27db6cc51f3",
+        "GeneratedBy": "urn:1da1246e-8f5c-4ddb-a27f-be71f0701162",
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       {
-        "@id": "urn:8547393d-de20-4286-9185-a5e3e8872ec0",
+        "@id": "urn:e3fc347c-23da-42f1-9c1e-0adba15a1643",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:b1798fa5-41c3-4c32-af33-ba038526e4b9",
+        "GeneratedBy": "urn:a6fece11-f37d-4d67-86a2-f2789092ab56",
         "digest": {
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-        "@id": "urn:fb2855e1-e166-43d1-82c1-370fde58b2ce",
+        "@id": "urn:05b977f9-3054-4c8c-bca4-36bab8c25375",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -1342,10 +1342,10 @@
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       {
-        "@id": "urn:0e8df35d-318a-47ab-aad9-59de5d48e26e",
+        "@id": "urn:e335ba2c-7aa9-42f2-9337-9d3fba7ccb43",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:cc3659dd-8933-41f9-b132-b2a64e91ffaf",
+        "GeneratedBy": "urn:23b55492-978b-4682-9b1f-fdd6e001aa8a",
         "digest": {
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diff --git a/examples/from_parsers/afni/afni_thr_voxelunct4_proc_bloc.jsonld b/examples/from_parsers/afni/afni_thr_voxelunct4_proc_bloc.jsonld
index 91a39575c..611d39228 100644
--- a/examples/from_parsers/afni/afni_thr_voxelunct4_proc_bloc.jsonld
+++ b/examples/from_parsers/afni/afni_thr_voxelunct4_proc_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "@id": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,178 +13,178 @@
     ],
     "Activities": [
       {
-        "@id": "urn:669e1fc0-0ce7-4613-8e8b-08db4a63db9b",
+        "@id": "urn:0dfed866-2ede-4e24-b325-521674b64e89",
         "Label": "auto block: setup",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "mkdir $output_dir; mkdir $output_dir/stimuli; cp ./afni_voxelwise_t4/tone_counting_onset_times.txt ./afni_voxelwise_t4/tone_counting_probe_duration.txt $output_dir/stimuli; 3dcopy sub-01_T1w.nii.gz $output_dir/sub-01_T1w; ",
         "Used": [
-          "urn:e5081baa-1acc-4ca1-b4e0-b504d7fed955",
-          "urn:ff6a8b57-ac8c-4df4-b617-4b3a0b2bc2b9",
-          "urn:3604a5a0-8d0a-446e-aaa0-a81b7138d093"
+          "urn:312d1c87-774d-4e65-8b24-bbec781ac0c9",
+          "urn:7bfb70e4-dd28-457b-9115-c026d7b0e481",
+          "urn:a4e634ec-6477-4701-8d92-e47373ff5397"
         ]
       },
       {
-        "@id": "urn:5a9fabb2-3b10-40fa-8806-332d6cd96b61",
+        "@id": "urn:2d85001c-40b1-466a-a9b6-372c7325ab1f",
         "Label": "auto block: tcat",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dTcat -prefix $output_dir/pb00.$subj.r01.tcat sub-01_task-tonecounting_bold.nii.gz'[0..$]'; ",
         "Used": [
-          "urn:3aa1e7d1-1fae-4173-89a7-0f4c340c28a2"
+          "urn:c6f3ed83-a724-4e2d-a805-0edc6c819be5"
         ]
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-        "@id": "urn:68e5f037-ae24-4110-bf68-0f33967fcdb1",
+        "@id": "urn:b579db4b-5448-4f1e-bd8a-db259c63ac50",
         "Label": "auto block: outcount",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dToutcount -automask -fraction -polort 2 -legendre pb00.$subj.r$run.tcat+orig > outcount.r$run.1D; cat outcount.r*.1D > outcount_rall.1D; ",
         "Used": [
-          "urn:e27a29e8-02ac-43cb-8f10-e82b13654dc8",
-          "urn:0e2391fb-c48d-4922-b20e-de1d93161959"
+          "urn:2c4cf46d-ba7f-47e6-97b8-ab593ed6e95b",
+          "urn:32e033f7-a4dd-4061-9c13-91086c163949"
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       {
-        "@id": "urn:23dc9eac-7e0a-4fb9-8c41-fd286cb8e6d4",
+        "@id": "urn:53598b3e-3202-44fa-8f1d-c63af84bad59",
         "Label": "tshift",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dTshift -tzero 0 -quintic -prefix pb01.$subj.r$run.tshift pb00.$subj.r$run.tcat+orig; ",
         "Used": [
-          "urn:e27a29e8-02ac-43cb-8f10-e82b13654dc8"
+          "urn:2c4cf46d-ba7f-47e6-97b8-ab593ed6e95b"
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       },
       {
-        "@id": "urn:e284cc01-ac8b-4ecd-815d-0ca2f933f53d",
+        "@id": "urn:0f953e19-1447-4b9a-9e28-41be969a521e",
         "Label": "align",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "align_epi_anat.py -anat2epi -anat sub-01_T1w+orig -save_skullstrip -suffix _al_junk -epi pb01.$subj.r01.tshift+orig -epi_base 2 -epi_strip 3dAutomask -volreg off -tshift off; ",
         "Used": [
-          "urn:fb3bb527-ace9-4fc0-aa87-c2013e3eec38",
-          "urn:d5e3f198-a9c4-4128-a3bc-7636be079ef3"
+          "urn:658a862e-4043-4eca-9aa3-fa687a36306f",
+          "urn:b5179c0a-3212-4552-8459-4cb76435a9ed"
         ]
       },
       {
-        "@id": "urn:f4df6cb7-c701-436a-9430-d2721a0a52a6",
+        "@id": "urn:72827f3b-d304-441b-a37b-1ced6a058261",
         "Label": "tlrc",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "@auto_tlrc -base TT_N27+tlrc -input sub-01_T1w_ns+orig -no_ss; cat_matvec sub-01_T1w_ns+tlrc::WARP_DATA -I > warp.anat.Xat.1D; ",
         "Used": [
-          "urn:d6edc215-1f9b-4996-8ac6-215c125316b0",
-          "urn:790edad4-6308-4c2b-9d08-5cf9b9a4a3e9",
-          "urn:ab38c57b-f9d1-418f-b7da-f63d7457eea2"
+          "urn:11763a8d-cb69-4341-906a-023ac7c89975",
+          "urn:596b4850-0e60-4fef-b836-31859e5acfd6",
+          "urn:e92c4f07-cfee-4817-8dc5-21121c8f647c"
         ]
       },
       {
-        "@id": "urn:55245bd5-e2b9-4e3d-89f6-898175db3b62",
+        "@id": "urn:fbbdd02d-f9ec-4807-b822-7742a2356072",
         "Label": "volreg",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dvolreg -verbose -zpad 1 -base pb01.$subj.r01.tshift+orig'[2]' -1Dfile dfile.r$run.1D -prefix rm.epi.volreg.r$run -cubic -1Dmatrix_save mat.r$run.vr.aff12.1D pb01.$subj.r$run.tshift+orig; 3dcalc -overwrite -a pb01.$subj.r$run.tshift+orig -expr 1 -prefix rm.epi.all1; cat_matvec -ONELINE sub-01_T1w_ns+tlrc::WARP_DATA -I sub-01_T1w_al_junk_mat.aff12.1D -I mat.r$run.vr.aff12.1D > mat.r$run.warp.aff12.1D; 3dAllineate -base sub-01_T1w_ns+tlrc -input pb01.$subj.r$run.tshift+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -prefix rm.epi.nomask.r$run; 3dAllineate -base sub-01_T1w_ns+tlrc -input rm.epi.all1+orig -1Dmatrix_apply mat.r$run.warp.aff12.1D -mast_dxyz 3 -final NN -quiet -prefix rm.epi.1.r$run; 3dTstat -min -prefix rm.epi.min.r$run rm.epi.1.r$run+tlrc; cat dfile.r*.1D > dfile_rall.1D; 3dcopy rm.epi.min.r01+tlrc mask_epi_extents; 3dcalc -a rm.epi.nomask.r$run+tlrc -b mask_epi_extents+tlrc -expr 'a*b' -prefix pb02.$subj.r$run.volreg; 3dcopy sub-01_T1w_ns+tlrc anat_final.$subj; 3dAllineate -source sub-01_T1w+orig -master anat_final.$subj+tlrc -final wsinc5 -1Dmatrix_apply warp.anat.Xat.1D -prefix anat_w_skull_warped; ",
         "Used": [
-          "urn:049ce5bc-724a-4c47-9d72-b77a52f94361",
-          "urn:049ce5bc-724a-4c47-9d72-b77a52f94361",
-          "urn:ab38c57b-f9d1-418f-b7da-f63d7457eea2",
-          "urn:cd986e5e-05c7-43b3-b72a-4808042f2c32",
-          "urn:049ce5bc-724a-4c47-9d72-b77a52f94361",
-          "urn:cd986e5e-05c7-43b3-b72a-4808042f2c32",
-          "urn:2a874c72-652a-4395-a282-238a0e8df62d",
-          "urn:07e15c34-289b-4c89-93b3-2b34fda0c07b",
-          "urn:30ce15aa-b1f3-470f-b216-c9bfba4b1af6",
-          "urn:8a02b9ac-5f58-42b6-8490-6ca2a3ed4eb9",
-          "urn:b7b63411-c4b2-48d7-9f0a-01e2993bd15b",
-          "urn:b2692284-5f1d-4184-8b98-7b75bfd8039b",
-          "urn:cd986e5e-05c7-43b3-b72a-4808042f2c32",
-          "urn:8eabd3c2-aef1-4561-a750-b18b5d99a114"
+          "urn:d367e414-b015-406b-a197-efd7feb66c54",
+          "urn:d367e414-b015-406b-a197-efd7feb66c54",
+          "urn:e92c4f07-cfee-4817-8dc5-21121c8f647c",
+          "urn:3088279e-3972-4eba-a902-ec857b348321",
+          "urn:d367e414-b015-406b-a197-efd7feb66c54",
+          "urn:3088279e-3972-4eba-a902-ec857b348321",
+          "urn:4c09be1d-5cbc-4f59-b9ba-9d22cb6a478e",
+          "urn:44d126c5-0e33-423a-9bc6-0eeb27830d9d",
+          "urn:f1939880-f643-4bfb-95ae-feaba72a6d4d",
+          "urn:88d4bf46-d31e-433c-a6f6-849d5b08a398",
+          "urn:4bfb75c7-997a-4f9f-b33a-af1843939f5b",
+          "urn:88d87a80-e427-4392-b670-1602b8d45fae",
+          "urn:3088279e-3972-4eba-a902-ec857b348321",
+          "urn:e26b5930-6e2f-4ec0-9f21-35b13e785b70"
         ]
       },
       {
-        "@id": "urn:2e0f436c-79e9-46a8-b63d-7dfc24beea09",
+        "@id": "urn:f4a712af-b0d2-4046-9f48-faf6b8548e40",
         "Label": "blur",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dmerge -1blur_fwhm 4.0 -doall -prefix pb03.$subj.r$run.blur pb02.$subj.r$run.volreg+tlrc; ",
         "Used": [
-          "urn:55641ff0-5d1d-4ecc-9c94-201c2e014103",
-          "urn:61125ce4-0505-4313-a6d8-9dd9309b3597"
+          "urn:df8596c1-150b-4381-8075-b48cc3a4407b",
+          "urn:e0a8e579-f99e-458f-821d-5acd22c4a3ba"
         ]
       },
       {
-        "@id": "urn:095fe016-ca8c-4a9d-a138-9274f9d4f80a",
+        "@id": "urn:2d907bf1-b660-4464-80fc-341ab48ac126",
         "Label": "mask",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dAutomask -dilate 1 -prefix rm.mask_r$run pb03.$subj.r$run.blur+tlrc; 3dmask_tool -inputs rm.mask_r*+tlrc.HEAD -union -prefix full_mask.$subj; 3dresample -master full_mask.$subj+tlrc -input sub-01_T1w_ns+tlrc -prefix rm.resam.anat; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.anat+tlrc -prefix mask_anat.$subj; 3dABoverlap -no_automask full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_overlap.txt; 3ddot -dodice full_mask.$subj+tlrc mask_anat.$subj+tlrc |& tee out.mask_ae_dice.txt; 3dresample -master full_mask.$subj+tlrc -prefix ./rm.resam.group -input /Users/u1591557/abin/TT_N27+tlrc; 3dmask_tool -dilate_input 5 -5 -fill_holes -input rm.resam.group+tlrc -prefix mask_group; ",
         "Used": [
-          "urn:122448d3-c878-4554-9aea-fb011671618f",
-          "urn:cd986e5e-05c7-43b3-b72a-4808042f2c32",
-          "urn:de18d140-2ad9-4fee-826c-495b339dfe68",
-          "urn:59b7eaaf-cde7-420b-a100-db32d13e794f",
-          "urn:9e1850b6-ffea-47ef-8e79-c79113529136",
-          "urn:4172ba06-847c-4616-ab77-c3c41b1d787c",
-          "urn:9e1850b6-ffea-47ef-8e79-c79113529136",
-          "urn:4172ba06-847c-4616-ab77-c3c41b1d787c",
-          "urn:42db81f2-95ce-49f7-a8de-88aa3b7ded4f",
-          "urn:de18d140-2ad9-4fee-826c-495b339dfe68",
-          "urn:b0346181-d3dd-47ca-80c9-9296654fcf8a"
+          "urn:033237d4-454f-4b72-a451-b233c06dfbbc",
+          "urn:3088279e-3972-4eba-a902-ec857b348321",
+          "urn:78eb9655-2615-48cb-8175-bdc58d75afa9",
+          "urn:7aa980a3-a715-4b02-9615-8bff400a4ae8",
+          "urn:3d7b689f-3ef8-40b2-b094-a6f0e0de5710",
+          "urn:748e083f-795d-442f-b1cf-3021e2192314",
+          "urn:3d7b689f-3ef8-40b2-b094-a6f0e0de5710",
+          "urn:748e083f-795d-442f-b1cf-3021e2192314",
+          "urn:78eb9655-2615-48cb-8175-bdc58d75afa9",
+          "urn:7b7743c9-a3c9-4e67-af87-66383d6394dd",
+          "urn:548fb52c-9c65-4932-ae44-f69ae07b3515"
         ]
       },
       {
-        "@id": "urn:210b7976-e9ae-4243-a954-7f09d63fafe5",
+        "@id": "urn:d250c09e-d28d-46f5-8ab4-df9a004b0d62",
         "Label": "scale",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dTstat -prefix rm.mean_r$run pb03.$subj.r$run.blur+tlrc; 3dcalc -a pb03.$subj.r$run.blur+tlrc -b rm.mean_r$run+tlrc -c mask_epi_extents+tlrc -expr 'c * min(200, a/b*100)*step(a)*step(b)' -prefix pb04.$subj.r$run.scale; ",
         "Used": [
-          "urn:122448d3-c878-4554-9aea-fb011671618f",
-          "urn:122448d3-c878-4554-9aea-fb011671618f",
-          "urn:beceec26-7523-46af-b8d7-0f6a297b520d",
-          "urn:b2692284-5f1d-4184-8b98-7b75bfd8039b"
+          "urn:033237d4-454f-4b72-a451-b233c06dfbbc",
+          "urn:033237d4-454f-4b72-a451-b233c06dfbbc",
+          "urn:4bfb75c7-997a-4f9f-b33a-af1843939f5b",
+          "urn:795f45f8-355e-4ce1-b896-2ce42d61bd5e"
         ]
       },
       {
-        "@id": "urn:b5a3c5a4-ab0c-4be4-a61d-2bbfdd0b664b",
+        "@id": "urn:82f1696b-c28a-4313-9689-1038773c2bd0",
         "Label": "regress",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "1d_tool.py -infile dfile_rall.1D -set_nruns 1 -demean -write motion_demean.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -derivative -demean -write motion_deriv.1D; 1d_tool.py -infile dfile_rall.1D -set_nruns 1 -show_censor_count -censor_prev_TR -censor_motion 0.3 motion_${subj}; 3dDeconvolve -input pb04.$subj.r*.scale+tlrc.HEAD -censor motion_${subj}_censor.1D -polort 2 -num_stimts 8 -stim_times 1 stimuli/tone_counting_onset_times.txt 'BLOCK(4)' -stim_label 1 tone_counting -stim_times_AM1 2 stimuli/tone_counting_probe_duration.txt 'dmBLOCK' -stim_label 2 probe -stim_file 3 motion_demean.1D'[0]' -stim_base 3 -stim_label 3 roll -stim_file 4 motion_demean.1D'[1]' -stim_base 4 -stim_label 4 pitch -stim_file 5 motion_demean.1D'[2]' -stim_base 5 -stim_label 5 yaw -stim_file 6 motion_demean.1D'[3]' -stim_base 6 -stim_label 6 dS -stim_file 7 motion_demean.1D'[4]' -stim_base 7 -stim_label 7 dL -stim_file 8 motion_demean.1D'[5]' -stim_base 8 -stim_label 8 dP -fout -tout -x1D X.xmat.1D -xjpeg X.jpg -x1D_uncensored X.nocensor.xmat.1D -fitts fitts.$subj -errts errts.${subj} -bucket stats.$subj; 1d_tool.py -show_cormat_warnings -infile X.xmat.1D |& tee out.cormat_warn.txt; 3dTcat -prefix all_runs.$subj pb04.$subj.r*.scale+tlrc.HEAD; 3dTstat -mean -prefix rm.signal.all all_runs.$subj+tlrc\"[$ktrs]\"; 3dTstat -stdev -prefix rm.noise.all errts.${subj}+tlrc\"[$ktrs]\"; 3dcalc -a rm.signal.all+tlrc -b rm.noise.all+tlrc -c full_mask.$subj+tlrc -expr 'c*a/b' -prefix TSNR.$subj; 3dTnorm -norm2 -prefix rm.errts.unit errts.${subj}+tlrc; 3dmaskave -quiet -mask full_mask.$subj+tlrc rm.errts.unit+tlrc > gmean.errts.unit.1D; 3dTstat -sos -prefix - gmean.errts.unit.1D\\' > out.gcor.1D; 3dcalc -a rm.errts.unit+tlrc -b gmean.errts.unit.1D -expr 'a*b' -prefix rm.DP; 3dTstat -sum -prefix corr_brain rm.DP+tlrc; 1dcat X.nocensor.xmat.1D'[3]' > ideal_tone_counting.1D; 1dcat X.nocensor.xmat.1D'[4]' > ideal_probe.1D; 3dTstat -sum -prefix sum_ideal.1D X.nocensor.xmat.1D\"[$reg_cols]\"; 1dcat X.nocensor.xmat.1D\"[$reg_cols]\" > X.stim.xmat.1D; ",
         "Used": [
-          "urn:7931efc7-71d6-4b0d-a464-dfb77e182541",
-          "urn:7931efc7-71d6-4b0d-a464-dfb77e182541",
-          "urn:7931efc7-71d6-4b0d-a464-dfb77e182541",
-          "urn:ca9401a0-9fb9-4db4-ac56-2dd3abd530ed",
-          "urn:ca9401a0-9fb9-4db4-ac56-2dd3abd530ed",
-          "urn:499070c6-6176-448b-8cc1-3e736dcbd1d7",
-          "urn:7e33bcfc-5cc9-4b7b-a65e-ed61463c35e0",
-          "urn:aa73830e-3f84-4726-afd9-f26f5c1d4b12",
-          "urn:6df1bfc5-ec9b-4942-9652-579daee2b106",
-          "urn:de18d140-2ad9-4fee-826c-495b339dfe68",
-          "urn:e2f6c140-b7ba-4df9-910a-ebd2fa54148a",
-          "urn:dc20751a-2da6-4559-afab-80dac72ca3f9",
-          "urn:7a2f3c98-6954-48a3-88c5-7705eaa93121",
-          "urn:b41877d1-5a48-4ad7-8454-3a5389e52fee",
-          "urn:5caedbe9-19f3-420e-8d87-f4e20ddbcce3",
-          "urn:dc49031c-cf43-4d64-bf8b-afea21e10b55",
-          "urn:87c3b7ec-ea9f-4656-83e4-9204d9e52a20",
-          "urn:87c3b7ec-ea9f-4656-83e4-9204d9e52a20"
+          "urn:87c95662-2ebd-444d-8fa0-4faa70836610",
+          "urn:87c95662-2ebd-444d-8fa0-4faa70836610",
+          "urn:87c95662-2ebd-444d-8fa0-4faa70836610",
+          "urn:a67cf8f7-40a4-470c-ac4f-e8403f6c09cc",
+          "urn:a67cf8f7-40a4-470c-ac4f-e8403f6c09cc",
+          "urn:323f4cd3-efa6-4fa6-834a-5e176620c273",
+          "urn:eae5a68d-7651-46bc-909d-5dfcdec7a79b",
+          "urn:78eb9655-2615-48cb-8175-bdc58d75afa9",
+          "urn:94a0d682-a073-4bea-abb0-c40a416bae72",
+          "urn:99b1db24-3ebe-4d24-9bd4-4e1f6018c449",
+          "urn:968f8eb8-a609-4ea7-b55d-15aa0ec4f553",
+          "urn:b6add10e-cf76-4004-ba18-ed21ee112374",
+          "urn:563fe303-2f17-49bf-8d23-942b7afd445c",
+          "urn:23c781ca-5477-4809-a1d1-521c42d06e6b",
+          "urn:de11a3ef-48eb-49af-8f70-74c35c37293a",
+          "urn:094008b5-3212-4aec-955d-717f4da89d2b",
+          "urn:9c136708-8d68-4f75-a608-dc20ffc91b24",
+          "urn:9c136708-8d68-4f75-a608-dc20ffc91b24"
         ]
       },
       {
-        "@id": "urn:ad85f4d2-bc86-4eb0-b051-e88d0ec7f05c",
+        "@id": "urn:4e7ac047-8b73-419b-89fb-8ab0035f3322",
         "Label": "blur estimation",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "3dFWHMx -detrend -mask full_mask.$subj+tlrc all_runs.$subj+tlrc\"[$trs]\" >> blur.epits.1D; 3dFWHMx -detrend -mask full_mask.$subj+tlrc errts.${subj}+tlrc\"[$trs]\" >> blur.errts.1D; 3dClustSim -both -mask full_mask.$subj+tlrc -fwhmxyz $fxyz[1-3] -prefix ClustSim; ",
         "Used": [
-          "urn:de18d140-2ad9-4fee-826c-495b339dfe68",
-          "urn:de18d140-2ad9-4fee-826c-495b339dfe68",
-          "urn:de18d140-2ad9-4fee-826c-495b339dfe68"
+          "urn:78eb9655-2615-48cb-8175-bdc58d75afa9",
+          "urn:78eb9655-2615-48cb-8175-bdc58d75afa9",
+          "urn:78eb9655-2615-48cb-8175-bdc58d75afa9"
         ]
       },
       {
-        "@id": "urn:e77c0498-1451-4586-9da6-e9057e9481a9",
+        "@id": "urn:857e8e51-3c15-4221-9d57-2b50496bd630",
         "Label": "auto block: generate review scripts",
-        "AssociatedWith": "urn:5e24e0c2-394f-49db-9a68-e68d7d5c0b1e",
+        "AssociatedWith": "urn:b7bcd7dc-d322-4027-85b2-9213ca9a7e33",
         "Command": "gen_epi_review.py -script @epi_review.$subj -dsets pb00.$subj.r*.tcat+orig.HEAD; gen_ss_review_scripts.py -mot_limit 0.3 -exit0; ",
         "Used": [
-          "urn:2eb17bf4-6037-4b2b-8ee3-1b2c53770e8f"
+          "urn:37379d5b-985b-4634-9f8a-f81d47039ca6"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:e5081baa-1acc-4ca1-b4e0-b504d7fed955",
+        "@id": "urn:7bfb70e4-dd28-457b-9115-c026d7b0e481",
         "Label": "tone_counting_onset_times.txt",
         "AtLocation": "./afni_voxelwise_t4/tone_counting_onset_times.txt",
         "digest": {
@@ -192,7 +192,7 @@
         }
       },
       {
-        "@id": "urn:ff6a8b57-ac8c-4df4-b617-4b3a0b2bc2b9",
+        "@id": "urn:312d1c87-774d-4e65-8b24-bbec781ac0c9",
         "Label": "tone_counting_probe_duration.txt",
         "AtLocation": "./afni_voxelwise_t4/tone_counting_probe_duration.txt",
         "digest": {
@@ -200,7 +200,7 @@
         }
       },
       {
-        "@id": "urn:3604a5a0-8d0a-446e-aaa0-a81b7138d093",
+        "@id": "urn:a4e634ec-6477-4701-8d92-e47373ff5397",
         "Label": "sub-01_T1w.nii.gz",
         "AtLocation": "sub-01_T1w.nii.gz",
         "digest": {
@@ -208,34 +208,34 @@
         }
       },
       {
-        "@id": "urn:89d4725b-2aa6-443d-a502-65b941ec8bdc",
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@@ -243,13 +243,13 @@
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@@ -257,7 +257,7 @@
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@@ -265,25 +265,25 @@
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@@ -291,16 +291,16 @@
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@@ -308,7 +308,7 @@
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@@ -316,16 +316,16 @@
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@@ -333,7 +333,7 @@
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@@ -341,7 +341,7 @@
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@@ -349,16 +349,16 @@
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@@ -366,16 +366,16 @@
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@@ -383,7 +383,7 @@
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@@ -391,7 +391,7 @@
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@@ -399,7 +399,7 @@
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@@ -407,7 +407,7 @@
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@@ -415,7 +415,7 @@
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@@ -423,7 +423,7 @@
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@@ -431,7 +431,7 @@
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@@ -439,97 +439,97 @@
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@@ -537,7 +537,7 @@
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@@ -545,7 +545,7 @@
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@@ -553,7 +553,7 @@
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@@ -561,7 +561,7 @@
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+        "GeneratedBy": "urn:82f1696b-c28a-4313-9689-1038773c2bd0",
         "digest": {
           "sha256": "b2dccadcd84b2d26ec9685c4d1846baf2f11b867f31c36a08748d1c85467b01a"
         }
       },
       {
-        "@id": "urn:21d9dbb9-b8b6-47ac-8451-250b1a8f10ff",
+        "@id": "urn:850f53fa-43b1-4832-9802-9025dadc1494",
         "Label": "X.stim.xmat.1D",
         "AtLocation": "X.stim.xmat.1D",
-        "GeneratedBy": "urn:b5a3c5a4-ab0c-4be4-a61d-2bbfdd0b664b",
+        "GeneratedBy": "urn:82f1696b-c28a-4313-9689-1038773c2bd0",
         "digest": {
           "sha256": "7c61b2f4bbb9eb0cecb19f81faa3a79b94d547b7fb4087ed18e368619e0004e6"
         }
       },
       {
-        "@id": "urn:de18d140-2ad9-4fee-826c-495b339dfe68",
+        "@id": "urn:78eb9655-2615-48cb-8175-bdc58d75afa9",
         "Label": "full_mask.$subj",
         "AtLocation": "full_mask.$subj+tlrc",
         "digest": {
@@ -952,34 +952,34 @@
         }
       },
       {
-        "@id": "urn:56608cbb-5e14-426b-8613-85eab3025d80",
+        "@id": "urn:b2cf637a-9b81-4b3c-b4ab-63bde7734aa8",
         "Label": "blur.epits.1D",
         "AtLocation": "blur.epits.1D",
-        "GeneratedBy": "urn:ad85f4d2-bc86-4eb0-b051-e88d0ec7f05c",
+        "GeneratedBy": "urn:4e7ac047-8b73-419b-89fb-8ab0035f3322",
         "digest": {
           "sha256": "623e70a42214e56babc1f1dca156e0b11ba09865dbd6ca9549d54ca2fc601515"
         }
       },
       {
-        "@id": "urn:e453c56c-a245-49c6-a1df-805c8d4b55f8",
+        "@id": "urn:cbf092fe-95f6-4477-a6d8-4ba609793da0",
         "Label": "blur.errts.1D",
         "AtLocation": "blur.errts.1D",
-        "GeneratedBy": "urn:ad85f4d2-bc86-4eb0-b051-e88d0ec7f05c",
+        "GeneratedBy": "urn:4e7ac047-8b73-419b-89fb-8ab0035f3322",
         "digest": {
           "sha256": "73969700079b5d3275536ac7eaf0e17571d7e74ec49553b6940f90d5718fc800"
         }
       },
       {
-        "@id": "urn:e04b5ef2-2a17-4125-a6e2-6e59daa4fbfd",
+        "@id": "urn:4a3c2dd0-cd1a-4c81-84bf-68a9a4bb0ade",
         "Label": "ClustSim",
         "AtLocation": "ClustSim",
-        "GeneratedBy": "urn:ad85f4d2-bc86-4eb0-b051-e88d0ec7f05c",
+        "GeneratedBy": "urn:4e7ac047-8b73-419b-89fb-8ab0035f3322",
         "digest": {
           "sha256": "2e0cdba2c91902ba12d742a39cb20df66cfd705ba8de767fbf68aae8eb65c6f0"
         }
       },
       {
-        "@id": "urn:2eb17bf4-6037-4b2b-8ee3-1b2c53770e8f",
+        "@id": "urn:37379d5b-985b-4634-9f8a-f81d47039ca6",
         "Label": "pb00.$subj.r*.tcat",
         "AtLocation": "pb00.$subj.r*.tcat+orig.HEAD",
         "digest": {
@@ -987,10 +987,10 @@
         }
       },
       {
-        "@id": "urn:41696253-13a1-4d14-a93f-f16cb8b3a7f9",
+        "@id": "urn:68e0ea2d-b170-4e4d-914f-6fafeb106edd",
         "Label": "-exit0",
         "AtLocation": "-exit0",
-        "GeneratedBy": "urn:e77c0498-1451-4586-9da6-e9057e9481a9",
+        "GeneratedBy": "urn:857e8e51-3c15-4221-9d57-2b50496bd630",
         "digest": {
           "sha256": "871a4d3513ed2924cbb10c1c15a196eac4a46a05bdcc248e3bcdb23327b3ad90"
         }
diff --git a/examples/from_parsers/afni/narps_do_02_pc_with_sign0.jsonld b/examples/from_parsers/afni/narps_do_02_pc_with_sign0.jsonld
index 19df0df1d..802e79287 100644
--- a/examples/from_parsers/afni/narps_do_02_pc_with_sign0.jsonld
+++ b/examples/from_parsers/afni/narps_do_02_pc_with_sign0.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:a365a7e3-6f69-48f8-aca7-ae5d99434345",
+        "@id": "urn:b624270f-a3c2-46c6-a27c-89d37f792539",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,53 +13,53 @@
     ],
     "Activities": [
       {
-        "@id": "urn:b30cc606-6137-447b-b28e-0fae2ef7dd42",
+        "@id": "urn:90645147-6abd-4c8a-a8a5-517f8a8f21fe",
         "Label": "3dpc",
-        "AssociatedWith": "urn:a365a7e3-6f69-48f8-aca7-ae5d99434345",
+        "AssociatedWith": "urn:b624270f-a3c2-46c6-a27c-89d37f792539",
         "Command": "3dpc -overwrite -mask ${dset_mask} -pcsave 5 -prefix ${dir_hyp}/PC_hyp${num} ${grp_dset}",
         "Parameters": {},
         "Used": [
-          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
-          "urn:e693c57c-65b6-445b-b9a2-bb2d67afd32b"
+          "urn:a68d7d7d-2892-4c73-8931-cb493bf3664b",
+          "urn:dcd9b6d5-0d6c-44a8-b2a4-20746f3bf451"
         ]
       },
       {
-        "@id": "urn:70d7cd80-32f6-4994-a4d4-c3fed4e02383",
+        "@id": "urn:3bbde2e2-3198-4f5e-a405-3dc2859a814d",
         "Label": "3dresample",
-        "AssociatedWith": "urn:a365a7e3-6f69-48f8-aca7-ae5d99434345",
+        "AssociatedWith": "urn:b624270f-a3c2-46c6-a27c-89d37f792539",
         "Command": "3dresample -overwrite -prefix tmp_REF_DSET.nii.gz -master ${dset_mask} -input \"${ref_dset}\"",
         "Parameters": {},
         "Used": [
-          "urn:af9b4299-4373-4423-8478-02481413a92c",
-          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4"
+          "urn:b0e85dbd-3264-414a-aad3-bded58a631c6",
+          "urn:dcd9b6d5-0d6c-44a8-b2a4-20746f3bf451"
         ]
       },
       {
-        "@id": "urn:f0664c49-ddd6-4d24-a5ba-c6bbf6b11662",
+        "@id": "urn:31c67e59-a174-4acc-a9db-a84469c666cf",
         "Label": "3dMatch",
-        "AssociatedWith": "urn:a365a7e3-6f69-48f8-aca7-ae5d99434345",
+        "AssociatedWith": "urn:b624270f-a3c2-46c6-a27c-89d37f792539",
         "Command": "3dMatch -echo_edu -overwrite -mask ${dset_mask} -refset ${dir_hyp}/PC_hyp${num}+tlrc -inset tmp_REF_DSET.nii.gz -prefix tmp_MATCHED",
         "Parameters": {},
         "Used": [
-          "urn:8967c63f-5fc7-44a6-a350-10e4d91420e5",
-          "urn:b04ba5a4-7187-414c-bf95-ec135e792a53",
-          "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4"
+          "urn:0aff86a2-c424-420f-8105-3869a44750ba",
+          "urn:dcd9b6d5-0d6c-44a8-b2a4-20746f3bf451",
+          "urn:eaef0dcb-5236-4a45-9f31-8a11e2ed6b04"
         ]
       },
       {
-        "@id": "urn:b4cb0bba-46e0-4c70-b0ed-fc17fcc0c5d5",
+        "@id": "urn:e6b98c73-86e5-4eed-abdd-25d3eb6842f7",
         "Label": "3dcalc",
-        "AssociatedWith": "urn:a365a7e3-6f69-48f8-aca7-ae5d99434345",
+        "AssociatedWith": "urn:b624270f-a3c2-46c6-a27c-89d37f792539",
         "Command": "3dcalc -echo_edu -overwrite -a ${dir_hyp}/PC_hyp${num}+tlrc -expr \"${signum}*a\" -prefix ${dir_hyp}/PC_hyp${num}_sign0.nii.gz",
         "Parameters": {},
         "Used": [
-          "urn:b04ba5a4-7187-414c-bf95-ec135e792a53"
+          "urn:eaef0dcb-5236-4a45-9f31-8a11e2ed6b04"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:7479bb7e-54b2-47ea-98d2-43c51aeaa2a4",
+        "@id": "urn:dcd9b6d5-0d6c-44a8-b2a4-20746f3bf451",
         "Label": "${dset_mask}",
         "AtLocation": "${dset_mask}",
         "digest": {
@@ -67,7 +67,7 @@
         }
       },
       {
-        "@id": "urn:e693c57c-65b6-445b-b9a2-bb2d67afd32b",
+        "@id": "urn:a68d7d7d-2892-4c73-8931-cb493bf3664b",
         "Label": "${grp_dset}",
         "AtLocation": "${grp_dset}",
         "digest": {
@@ -75,16 +75,16 @@
         }
       },
       {
-        "@id": "urn:7f8dcb20-fc81-454b-bfd1-236e9f7c0c4f",
+        "@id": "urn:1d44d844-c4ca-4840-9019-b9b7a5f712e2",
         "Label": "PC_hyp${num}",
         "AtLocation": "${dir_hyp}/PC_hyp${num}",
-        "GeneratedBy": "urn:b30cc606-6137-447b-b28e-0fae2ef7dd42",
+        "GeneratedBy": "urn:90645147-6abd-4c8a-a8a5-517f8a8f21fe",
         "digest": {
           "sha256": "915832134c7f76c64fd48179b53dfb05de128b50ef451380b440cff2ec1990fb"
         }
       },
       {
-        "@id": "urn:af9b4299-4373-4423-8478-02481413a92c",
+        "@id": "urn:b0e85dbd-3264-414a-aad3-bded58a631c6",
         "Label": "\"${ref_dset}\"",
         "AtLocation": "\"${ref_dset}\"",
         "digest": {
@@ -92,16 +92,16 @@
         }
       },
       {
-        "@id": "urn:8967c63f-5fc7-44a6-a350-10e4d91420e5",
+        "@id": "urn:0aff86a2-c424-420f-8105-3869a44750ba",
         "Label": "tmp_REF_DSET.nii.gz",
         "AtLocation": "tmp_REF_DSET.nii.gz",
-        "GeneratedBy": "urn:70d7cd80-32f6-4994-a4d4-c3fed4e02383",
+        "GeneratedBy": "urn:3bbde2e2-3198-4f5e-a405-3dc2859a814d",
         "digest": {
           "sha256": "e943c60b478a75e89c043bc4a7a6e6c629c3f075007ff501f7b2ab3a253e8d3d"
         }
       },
       {
-        "@id": "urn:b04ba5a4-7187-414c-bf95-ec135e792a53",
+        "@id": "urn:eaef0dcb-5236-4a45-9f31-8a11e2ed6b04",
         "Label": "PC_hyp${num}",
         "AtLocation": "${dir_hyp}/PC_hyp${num}+tlrc",
         "digest": {
@@ -109,19 +109,19 @@
         }
       },
       {
-        "@id": "urn:39cc23bc-4f4d-4709-9250-e84f23fea27f",
+        "@id": "urn:a8a1a9f6-ef1a-480d-bdea-a1be759db9ea",
         "Label": "tmp_MATCHED",
         "AtLocation": "tmp_MATCHED",
-        "GeneratedBy": "urn:f0664c49-ddd6-4d24-a5ba-c6bbf6b11662",
+        "GeneratedBy": "urn:31c67e59-a174-4acc-a9db-a84469c666cf",
         "digest": {
           "sha256": "a251065c7203a21b76c1fb6acd1edb6da1c29896ad2df1f5479c71e16a29c302"
         }
       },
       {
-        "@id": "urn:5d71ef67-fdc3-4c22-b0ce-a46353f96da6",
+        "@id": "urn:40c7b3b1-aa1b-41ef-b09f-423be7a6600a",
         "Label": "PC_hyp${num}_sign0.nii.gz",
         "AtLocation": "${dir_hyp}/PC_hyp${num}_sign0.nii.gz",
-        "GeneratedBy": "urn:b4cb0bba-46e0-4c70-b0ed-fc17fcc0c5d5",
+        "GeneratedBy": "urn:e6b98c73-86e5-4eed-abdd-25d3eb6842f7",
         "digest": {
           "sha256": "5f0818d820edebe892295ffc1dd6f69823f2fb843bc2c3b0b5304054fa227af0"
         }
diff --git a/examples/from_parsers/afni/narps_do_02_pc_with_sign0_bloc.jsonld b/examples/from_parsers/afni/narps_do_02_pc_with_sign0_bloc.jsonld
index ddb608c29..f6af5d0f3 100644
--- a/examples/from_parsers/afni/narps_do_02_pc_with_sign0_bloc.jsonld
+++ b/examples/from_parsers/afni/narps_do_02_pc_with_sign0_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:71935ebf-a6ab-4500-ad8b-7f5e8da5e05e",
+        "@id": "urn:b42066b4-1ce6-4ef1-81c8-5b010b7b18a9",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,32 +13,32 @@
     ],
     "Activities": [
       {
-        "@id": "urn:f9d9798b-3574-4575-9644-32356a2670e4",
+        "@id": "urn:66899270-94c2-43f0-a18d-0cc0171d7a9c",
         "Label": "",
-        "AssociatedWith": "urn:71935ebf-a6ab-4500-ad8b-7f5e8da5e05e",
+        "AssociatedWith": "urn:b42066b4-1ce6-4ef1-81c8-5b010b7b18a9",
         "Command": "3dpc -overwrite -mask ${dset_mask} -pcsave 5 -prefix ${dir_hyp}/PC_hyp${num} ${grp_dset}; ",
         "Used": [
-          "urn:2b4f94e0-5fc5-4ffe-bef1-0aac47d21a99",
-          "urn:fe638e60-c25e-4ea2-9402-d0a17266edce"
+          "urn:3a3f7dc1-b64c-4e37-94ad-ced61e976493",
+          "urn:6bd8a464-c1d1-4ad1-887e-89e4569f4fc5"
         ]
       },
       {
-        "@id": "urn:c5248d48-74a5-470d-8bcb-ad95174cda17",
+        "@id": "urn:c5b45432-97f7-4d5d-9cb7-4468389c1014",
         "Label": "bloc ...",
-        "AssociatedWith": "urn:71935ebf-a6ab-4500-ad8b-7f5e8da5e05e",
+        "AssociatedWith": "urn:b42066b4-1ce6-4ef1-81c8-5b010b7b18a9",
         "Command": "3dresample -overwrite -prefix tmp_REF_DSET.nii.gz -master ${dset_mask} -input \"${ref_dset}\"; 3dMatch -echo_edu -overwrite -mask ${dset_mask} -refset ${dir_hyp}/PC_hyp${num}+tlrc -inset tmp_REF_DSET.nii.gz -prefix tmp_MATCHED; 3dcalc -echo_edu -overwrite -a ${dir_hyp}/PC_hyp${num}+tlrc -expr \"${signum}*a\" -prefix ${dir_hyp}/PC_hyp${num}_sign0.nii.gz; ",
         "Used": [
-          "urn:4a3af7a0-3036-4378-9a44-c64d83423ba4",
-          "urn:2b4f94e0-5fc5-4ffe-bef1-0aac47d21a99",
-          "urn:e2161cb4-2cf0-4eea-b9fd-88b0157f0df4",
-          "urn:2b4f94e0-5fc5-4ffe-bef1-0aac47d21a99",
-          "urn:e2161cb4-2cf0-4eea-b9fd-88b0157f0df4"
+          "urn:6bd8a464-c1d1-4ad1-887e-89e4569f4fc5",
+          "urn:dbc62c04-7401-4242-bd5f-1e0cd3200344",
+          "urn:6bd8a464-c1d1-4ad1-887e-89e4569f4fc5",
+          "urn:a38e9c6e-092c-4a2a-ad84-77d8ef3aed75",
+          "urn:a38e9c6e-092c-4a2a-ad84-77d8ef3aed75"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:2b4f94e0-5fc5-4ffe-bef1-0aac47d21a99",
+        "@id": "urn:6bd8a464-c1d1-4ad1-887e-89e4569f4fc5",
         "Label": "${dset_mask}",
         "AtLocation": "${dset_mask}",
         "digest": {
@@ -46,7 +46,7 @@
         }
       },
       {
-        "@id": "urn:fe638e60-c25e-4ea2-9402-d0a17266edce",
+        "@id": "urn:3a3f7dc1-b64c-4e37-94ad-ced61e976493",
         "Label": "${grp_dset}",
         "AtLocation": "${grp_dset}",
         "digest": {
@@ -54,16 +54,16 @@
         }
       },
       {
-        "@id": "urn:b5a1e0ec-f429-4dad-8195-9e71c8861dae",
+        "@id": "urn:b1c2c519-8550-40ba-9541-f954ae39fb12",
         "Label": "PC_hyp${num}",
         "AtLocation": "${dir_hyp}/PC_hyp${num}",
-        "GeneratedBy": "urn:f9d9798b-3574-4575-9644-32356a2670e4",
+        "GeneratedBy": "urn:66899270-94c2-43f0-a18d-0cc0171d7a9c",
         "digest": {
           "sha256": "915832134c7f76c64fd48179b53dfb05de128b50ef451380b440cff2ec1990fb"
         }
       },
       {
-        "@id": "urn:2b4f94e0-5fc5-4ffe-bef1-0aac47d21a99",
+        "@id": "urn:6bd8a464-c1d1-4ad1-887e-89e4569f4fc5",
         "Label": "${dset_mask}",
         "AtLocation": "${dset_mask}",
         "digest": {
@@ -71,7 +71,7 @@
         }
       },
       {
-        "@id": "urn:4a3af7a0-3036-4378-9a44-c64d83423ba4",
+        "@id": "urn:dbc62c04-7401-4242-bd5f-1e0cd3200344",
         "Label": "\"${ref_dset}\"",
         "AtLocation": "\"${ref_dset}\"",
         "digest": {
@@ -79,7 +79,7 @@
         }
       },
       {
-        "@id": "urn:e2161cb4-2cf0-4eea-b9fd-88b0157f0df4",
+        "@id": "urn:a38e9c6e-092c-4a2a-ad84-77d8ef3aed75",
         "Label": "PC_hyp${num}",
         "AtLocation": "${dir_hyp}/PC_hyp${num}+tlrc",
         "digest": {
@@ -87,19 +87,19 @@
         }
       },
       {
-        "@id": "urn:74a19541-23cc-4447-9e24-964b612c2b15",
+        "@id": "urn:0e402105-a625-4b0d-aabb-84565733d38a",
         "Label": "tmp_MATCHED",
         "AtLocation": "tmp_MATCHED",
-        "GeneratedBy": "urn:c5248d48-74a5-470d-8bcb-ad95174cda17",
+        "GeneratedBy": "urn:c5b45432-97f7-4d5d-9cb7-4468389c1014",
         "digest": {
           "sha256": "a251065c7203a21b76c1fb6acd1edb6da1c29896ad2df1f5479c71e16a29c302"
         }
       },
       {
-        "@id": "urn:ba85afc6-5799-4f95-8ec2-1b938e646d31",
+        "@id": "urn:f077f5e9-1c50-4198-9c92-b9d632ff2e18",
         "Label": "PC_hyp${num}_sign0.nii.gz",
         "AtLocation": "${dir_hyp}/PC_hyp${num}_sign0.nii.gz",
-        "GeneratedBy": "urn:c5248d48-74a5-470d-8bcb-ad95174cda17",
+        "GeneratedBy": "urn:c5b45432-97f7-4d5d-9cb7-4468389c1014",
         "digest": {
           "sha256": "5f0818d820edebe892295ffc1dd6f69823f2fb843bc2c3b0b5304054fa227af0"
         }
diff --git a/examples/from_parsers/afni/narps_do_04_make_imgs_A.jsonld b/examples/from_parsers/afni/narps_do_04_make_imgs_A.jsonld
index d965d89ab..1bb842e3a 100644
--- a/examples/from_parsers/afni/narps_do_04_make_imgs_A.jsonld
+++ b/examples/from_parsers/afni/narps_do_04_make_imgs_A.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "@id": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,67 +13,67 @@
     ],
     "Activities": [
       {
-        "@id": "urn:f8be5416-8122-419c-b982-29067b5dc5ea",
+        "@id": "urn:af37ed47-62d0-4033-aaf3-b1a9bff13185",
         "Label": "Make directory",
-        "AssociatedWith": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "AssociatedWith": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "Command": "\\mkdir ${odir}",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:fc4e83c4-c47d-46a0-b475-3bff18608a56",
+        "@id": "urn:ed039280-27f5-4133-b5da-56c4aa37acde",
         "Label": "@chauffeur_afni",
-        "AssociatedWith": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "AssociatedWith": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "Command": "@chauffeur_afni -ulay ${ref} -ulay_range \"2%\" \"110%\" -olay ${ff} -set_subbricks -1 0 0 -func_range 5 -thr_olay 3 -cbar Reds_and_Blues_Inv -olay_alpha Linear -olay_boxed Yes -opacity 7 -prefix ${odir}/img_${nnn}_alpha_${iid} -montx 1 -monty 1 -set_dicom_xyz 5 18 18 -set_xhairs OFF -label_string \"::${iid}\" -label_mode 1 -label_size 3 -do_clean",
         "Parameters": {},
         "Used": [
-          "urn:9afa03eb-c567-4dc5-be4b-5e5535fc712c"
+          "urn:0573bcfc-c7db-41bb-9a08-3709f030ecb3"
         ]
       },
       {
-        "@id": "urn:8bd97ac6-43b4-427f-8481-3297908a83ef",
+        "@id": "urn:471a60f2-312f-4b0a-bd18-6e25086c7503",
         "Label": "@chauffeur_afni",
-        "AssociatedWith": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "AssociatedWith": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "Command": "@chauffeur_afni -ulay ${ref} -ulay_range \"2%\" \"110%\" -olay ${ff} -set_subbricks -1 0 0 -func_range 5 -thr_olay 3 -cbar Reds_and_Blues_Inv -olay_alpha No -olay_boxed No -opacity 7 -prefix ${odir}/img_${nnn}_psi_${iid} -montx 1 -monty 1 -set_dicom_xyz 5 18 18 -set_xhairs OFF -label_string \"::${iid}\" -label_mode 1 -label_size 3 -do_clean",
         "Parameters": {},
         "Used": [
-          "urn:9afa03eb-c567-4dc5-be4b-5e5535fc712c"
+          "urn:0573bcfc-c7db-41bb-9a08-3709f030ecb3"
         ]
       },
       {
-        "@id": "urn:b10d5108-8806-4746-a9d9-df7707480c86",
+        "@id": "urn:a74a4155-f6eb-4f14-89cd-6c9af840b2c7",
         "Label": "adjunct_calc_mont_dims.py",
-        "AssociatedWith": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "AssociatedWith": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "Command": "adjunct_calc_mont_dims.py ${nallbase} __tmp_${hyp}",
         "Parameters": {},
         "Used": [
-          "urn:091619d7-2630-497f-9e72-2c1237fcefc7"
+          "urn:af89af9c-125e-4b55-a644-10be24d34fb7"
         ]
       },
       {
-        "@id": "urn:fa97c292-3cc3-49ca-bfd1-3d2096c6eeee",
+        "@id": "urn:52bd406f-d274-405c-9bd2-12ad2edf9eef",
         "Label": "2dcat",
-        "AssociatedWith": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "AssociatedWith": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "Command": "2dcat -echo_edu -gap 5 -gap_col ${lcol} -ny ${dims[4]} -nx ${dims[3]} -zero_wrap -prefix ${odir}/ALL_alpha_${hyp}_sview_${ss}.jpg ${odir}/img_*_alpha*${ss}*",
         "Parameters": {},
         "Used": [
-          "urn:3a05e7d0-9801-405b-8bf1-1d8374bd2e13"
+          "urn:84f56de4-3465-4cf5-9217-cdfaa5a8257e"
         ]
       },
       {
-        "@id": "urn:70dbec60-b908-498d-826f-65d7633bb261",
+        "@id": "urn:4422b094-b875-4fd4-8a41-55e97ebcc7e0",
         "Label": "2dcat",
-        "AssociatedWith": "urn:590ba71a-c6d9-434e-a343-6f856119883b",
+        "AssociatedWith": "urn:c193ee69-a1b6-4368-9111-7d2e95762454",
         "Command": "2dcat -echo_edu -gap 5 -gap_col ${lcol} -ny ${dims[4]} -nx ${dims[3]} -zero_wrap -prefix ${odir}/ALL_psi_${hyp}_sview_${ss}.jpg ${odir}/img_*_psi*${ss}*",
         "Parameters": {},
         "Used": [
-          "urn:3e0f8be8-e09a-4de1-8898-42148d574f5a"
+          "urn:62de0566-6cb1-4a25-bee0-6b7ed491b2af"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:9afa03eb-c567-4dc5-be4b-5e5535fc712c",
+        "@id": "urn:0573bcfc-c7db-41bb-9a08-3709f030ecb3",
         "Label": "${ref}",
         "AtLocation": "${ref}",
         "digest": {
@@ -81,25 +81,25 @@
         }
       },
       {
-        "@id": "urn:719afeb9-a1ed-4c0c-9b64-4b8d6aa33a9d",
+        "@id": "urn:55cac575-b451-483d-89fd-26175de93e13",
         "Label": "img_${nnn}_alpha_${iid}",
         "AtLocation": "${odir}/img_${nnn}_alpha_${iid}",
-        "GeneratedBy": "urn:fc4e83c4-c47d-46a0-b475-3bff18608a56",
+        "GeneratedBy": "urn:ed039280-27f5-4133-b5da-56c4aa37acde",
         "digest": {
           "sha256": "a0e5cbd9fe17cb80fe572ff230c1433b6f007d58746205bc6cf4747a1da48d1e"
         }
       },
       {
-        "@id": "urn:b42e214e-b817-49ea-b57e-688b5fe9413f",
+        "@id": "urn:437944b7-da8d-4fe2-9606-45329b04b990",
         "Label": "img_${nnn}_psi_${iid}",
         "AtLocation": "${odir}/img_${nnn}_psi_${iid}",
-        "GeneratedBy": "urn:8bd97ac6-43b4-427f-8481-3297908a83ef",
+        "GeneratedBy": "urn:471a60f2-312f-4b0a-bd18-6e25086c7503",
         "digest": {
           "sha256": "7c339c3ad32d56d3fd94128ff49e2bd3d109fddaaaa46451e0a8d646ae23cfe3"
         }
       },
       {
-        "@id": "urn:091619d7-2630-497f-9e72-2c1237fcefc7",
+        "@id": "urn:af89af9c-125e-4b55-a644-10be24d34fb7",
         "Label": "nallbase",
         "AtLocation": "nallbase",
         "digest": {
@@ -107,16 +107,16 @@
         }
       },
       {
-        "@id": "urn:36cdfedd-cdbc-4de1-84e8-ed8b0a881a96",
+        "@id": "urn:d90ed920-e508-4dbc-8a15-28f8ca144fbc",
         "Label": "__tmp_",
         "AtLocation": "__tmp_",
-        "GeneratedBy": "urn:b10d5108-8806-4746-a9d9-df7707480c86",
+        "GeneratedBy": "urn:a74a4155-f6eb-4f14-89cd-6c9af840b2c7",
         "digest": {
           "sha256": "cdd06e3421f1953c55722187ed4a54d26fbbdabf2b77d6ba9abce36f2a9a8bbb"
         }
       },
       {
-        "@id": "urn:3a05e7d0-9801-405b-8bf1-1d8374bd2e13",
+        "@id": "urn:84f56de4-3465-4cf5-9217-cdfaa5a8257e",
         "Label": "img_*_alpha*${ss}*",
         "AtLocation": "${odir}/img_*_alpha*${ss}*",
         "digest": {
@@ -124,16 +124,16 @@
         }
       },
       {
-        "@id": "urn:b834a4fc-bc36-42fa-a712-3100e7dbcb90",
+        "@id": "urn:eae1ad4d-af8a-4315-9449-a5faf98f38ef",
         "Label": "ALL_alpha_${hyp}_sview_${ss}.jpg",
         "AtLocation": "${odir}/ALL_alpha_${hyp}_sview_${ss}.jpg",
-        "GeneratedBy": "urn:fa97c292-3cc3-49ca-bfd1-3d2096c6eeee",
+        "GeneratedBy": "urn:52bd406f-d274-405c-9bd2-12ad2edf9eef",
         "digest": {
           "sha256": "b30960ff9bf2be10473ab3cdd82775a150362f0b714db8b55d263d0d94078ecf"
         }
       },
       {
-        "@id": "urn:3e0f8be8-e09a-4de1-8898-42148d574f5a",
+        "@id": "urn:62de0566-6cb1-4a25-bee0-6b7ed491b2af",
         "Label": "img_*_psi*${ss}*",
         "AtLocation": "${odir}/img_*_psi*${ss}*",
         "digest": {
@@ -141,10 +141,10 @@
         }
       },
       {
-        "@id": "urn:ba2ddac7-ea39-45cc-b261-8e86907e891d",
+        "@id": "urn:681749e2-d210-4fe2-bea3-c7f02908594a",
         "Label": "ALL_psi_${hyp}_sview_${ss}.jpg",
         "AtLocation": "${odir}/ALL_psi_${hyp}_sview_${ss}.jpg",
-        "GeneratedBy": "urn:70dbec60-b908-498d-826f-65d7633bb261",
+        "GeneratedBy": "urn:4422b094-b875-4fd4-8a41-55e97ebcc7e0",
         "digest": {
           "sha256": "c9b97ba53a4832ccd96c2802949fe72dc1e3718be9fc91d8fd85375a99c4d290"
         }
diff --git a/examples/from_parsers/afni/narps_do_04_make_imgs_A_bloc.jsonld b/examples/from_parsers/afni/narps_do_04_make_imgs_A_bloc.jsonld
index 8cd5d4cd2..0c1dc53f0 100644
--- a/examples/from_parsers/afni/narps_do_04_make_imgs_A_bloc.jsonld
+++ b/examples/from_parsers/afni/narps_do_04_make_imgs_A_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:fec24f26-05bc-46b1-a308-e387bad0083c",
+        "@id": "urn:165a1602-9cae-4311-84b5-3834366b9b38",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,29 +13,29 @@
     ],
     "Activities": [
       {
-        "@id": "urn:7f0c003b-cd9b-46bd-a0cb-e23e674efa0c",
+        "@id": "urn:37154f93-c242-4db5-ac64-d883928bdcd3",
         "Label": "",
-        "AssociatedWith": "urn:fec24f26-05bc-46b1-a308-e387bad0083c",
+        "AssociatedWith": "urn:165a1602-9cae-4311-84b5-3834366b9b38",
         "Command": "\\mkdir ${odir}; ",
         "Used": []
       },
       {
-        "@id": "urn:b916902c-b0c4-4efe-9041-e21b5b59aaae",
+        "@id": "urn:bf4ed4ca-115c-4320-bbfa-cf160080113d",
         "Label": "bloc ...",
-        "AssociatedWith": "urn:fec24f26-05bc-46b1-a308-e387bad0083c",
+        "AssociatedWith": "urn:165a1602-9cae-4311-84b5-3834366b9b38",
         "Command": "@chauffeur_afni -ulay ${ref} -ulay_range \"2%\" \"110%\" -olay ${ff} -set_subbricks -1 0 0 -func_range 5 -thr_olay 3 -cbar Reds_and_Blues_Inv -olay_alpha Linear -olay_boxed Yes -opacity 7 -prefix ${odir}/img_${nnn}_alpha_${iid} -montx 1 -monty 1 -set_dicom_xyz 5 18 18 -set_xhairs OFF -label_string \"::${iid}\" -label_mode 1 -label_size 3 -do_clean; @chauffeur_afni -ulay ${ref} -ulay_range \"2%\" \"110%\" -olay ${ff} -set_subbricks -1 0 0 -func_range 5 -thr_olay 3 -cbar Reds_and_Blues_Inv -olay_alpha No -olay_boxed No -opacity 7 -prefix ${odir}/img_${nnn}_psi_${iid} -montx 1 -monty 1 -set_dicom_xyz 5 18 18 -set_xhairs OFF -label_string \"::${iid}\" -label_mode 1 -label_size 3 -do_clean; adjunct_calc_mont_dims.py ${nallbase} __tmp_${hyp}; 2dcat -echo_edu -gap 5 -gap_col ${lcol} -ny ${dims[4]} -nx ${dims[3]} -zero_wrap -prefix ${odir}/ALL_alpha_${hyp}_sview_${ss}.jpg ${odir}/img_*_alpha*${ss}*; 2dcat -echo_edu -gap 5 -gap_col ${lcol} -ny ${dims[4]} -nx ${dims[3]} -zero_wrap -prefix ${odir}/ALL_psi_${hyp}_sview_${ss}.jpg ${odir}/img_*_psi*${ss}*; ",
         "Used": [
-          "urn:e3a00e98-0b9c-486c-9d45-661ad0f29c5c",
-          "urn:e3a00e98-0b9c-486c-9d45-661ad0f29c5c",
-          "urn:dac866b4-d456-4117-8d49-7ed57506aee0",
-          "urn:1a7df79f-5d60-474a-b28f-8b9b822bcc19",
-          "urn:2783a287-676c-45f3-9447-710c44eeaaf1"
+          "urn:12bb6358-d0b4-4fa6-b56a-57abca5f5173",
+          "urn:12bb6358-d0b4-4fa6-b56a-57abca5f5173",
+          "urn:fa7c6077-b312-4c30-bada-86a87dfaf004",
+          "urn:348581c2-45e2-43bb-91e7-f0fec0b7fa58",
+          "urn:900d0f5b-e68c-4fa6-9d84-c5c4209a2067"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:e3a00e98-0b9c-486c-9d45-661ad0f29c5c",
+        "@id": "urn:12bb6358-d0b4-4fa6-b56a-57abca5f5173",
         "Label": "${ref}",
         "AtLocation": "${ref}",
         "digest": {
@@ -43,7 +43,7 @@
         }
       },
       {
-        "@id": "urn:dac866b4-d456-4117-8d49-7ed57506aee0",
+        "@id": "urn:fa7c6077-b312-4c30-bada-86a87dfaf004",
         "Label": "nallbase",
         "AtLocation": "nallbase",
         "digest": {
@@ -51,7 +51,7 @@
         }
       },
       {
-        "@id": "urn:1a7df79f-5d60-474a-b28f-8b9b822bcc19",
+        "@id": "urn:348581c2-45e2-43bb-91e7-f0fec0b7fa58",
         "Label": "img_*_alpha*${ss}*",
         "AtLocation": "${odir}/img_*_alpha*${ss}*",
         "digest": {
@@ -59,7 +59,7 @@
         }
       },
       {
-        "@id": "urn:2783a287-676c-45f3-9447-710c44eeaaf1",
+        "@id": "urn:900d0f5b-e68c-4fa6-9d84-c5c4209a2067",
         "Label": "img_*_psi*${ss}*",
         "AtLocation": "${odir}/img_*_psi*${ss}*",
         "digest": {
@@ -67,46 +67,46 @@
         }
       },
       {
-        "@id": "urn:0b064394-077e-4c5a-b3da-8fc4bb051868",
+        "@id": "urn:a0d9e6c4-68dd-48b7-a051-c3a2b8801090",
         "Label": "img_${nnn}_alpha_${iid}",
         "AtLocation": "${odir}/img_${nnn}_alpha_${iid}",
-        "GeneratedBy": "urn:b916902c-b0c4-4efe-9041-e21b5b59aaae",
+        "GeneratedBy": "urn:bf4ed4ca-115c-4320-bbfa-cf160080113d",
         "digest": {
           "sha256": "a0e5cbd9fe17cb80fe572ff230c1433b6f007d58746205bc6cf4747a1da48d1e"
         }
       },
       {
-        "@id": "urn:0ed32843-e5ab-4481-afa1-03fc0a69ddc8",
+        "@id": "urn:8b511463-aceb-4c2c-a326-ca0e49078e50",
         "Label": "img_${nnn}_psi_${iid}",
         "AtLocation": "${odir}/img_${nnn}_psi_${iid}",
-        "GeneratedBy": "urn:b916902c-b0c4-4efe-9041-e21b5b59aaae",
+        "GeneratedBy": "urn:bf4ed4ca-115c-4320-bbfa-cf160080113d",
         "digest": {
           "sha256": "7c339c3ad32d56d3fd94128ff49e2bd3d109fddaaaa46451e0a8d646ae23cfe3"
         }
       },
       {
-        "@id": "urn:97404bf1-deb1-4e37-b199-2280209c6e16",
+        "@id": "urn:7636c0c1-f9fb-423e-8fed-6cec94466807",
         "Label": "__tmp_",
         "AtLocation": "__tmp_",
-        "GeneratedBy": "urn:b916902c-b0c4-4efe-9041-e21b5b59aaae",
+        "GeneratedBy": "urn:bf4ed4ca-115c-4320-bbfa-cf160080113d",
         "digest": {
           "sha256": "cdd06e3421f1953c55722187ed4a54d26fbbdabf2b77d6ba9abce36f2a9a8bbb"
         }
       },
       {
-        "@id": "urn:0b61184a-cac9-40b6-81dc-6872a83e0af4",
+        "@id": "urn:4ec058ba-c166-41da-af73-dd0306ffb11c",
         "Label": "ALL_alpha_${hyp}_sview_${ss}.jpg",
         "AtLocation": "${odir}/ALL_alpha_${hyp}_sview_${ss}.jpg",
-        "GeneratedBy": "urn:b916902c-b0c4-4efe-9041-e21b5b59aaae",
+        "GeneratedBy": "urn:bf4ed4ca-115c-4320-bbfa-cf160080113d",
         "digest": {
           "sha256": "b30960ff9bf2be10473ab3cdd82775a150362f0b714db8b55d263d0d94078ecf"
         }
       },
       {
-        "@id": "urn:c6d1eb8b-6f60-4d3c-88dd-dc6a63a8402c",
+        "@id": "urn:071a36b0-128b-4e4e-9b09-5d4bf6f63903",
         "Label": "ALL_psi_${hyp}_sview_${ss}.jpg",
         "AtLocation": "${odir}/ALL_psi_${hyp}_sview_${ss}.jpg",
-        "GeneratedBy": "urn:b916902c-b0c4-4efe-9041-e21b5b59aaae",
+        "GeneratedBy": "urn:bf4ed4ca-115c-4320-bbfa-cf160080113d",
         "digest": {
           "sha256": "c9b97ba53a4832ccd96c2802949fe72dc1e3718be9fc91d8fd85375a99c4d290"
         }
diff --git a/examples/from_parsers/afni/narps_do_13_view_zoom.jsonld b/examples/from_parsers/afni/narps_do_13_view_zoom.jsonld
index e1c1bff7c..dc684021e 100644
--- a/examples/from_parsers/afni/narps_do_13_view_zoom.jsonld
+++ b/examples/from_parsers/afni/narps_do_13_view_zoom.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "@id": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,35 +13,35 @@
     ],
     "Activities": [
       {
-        "@id": "urn:8d09e527-652f-4076-80ce-0cf83cc38ddc",
+        "@id": "urn:3d49be80-4c79-4766-92cc-527c8883aeea",
         "Label": "Make directory",
-        "AssociatedWith": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "AssociatedWith": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "Command": "mkdir -p ${odir}",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:dbde917c-9ba0-4d04-bd2d-fd2c34c2d061",
+        "@id": "urn:15284312-25a6-4da3-ad47-1a67b02f42ff",
         "Label": "IsoSurface",
-        "AssociatedWith": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "AssociatedWith": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "Command": "IsoSurface -overwrite -isorois+dsets -input ${ivol} -o_gii cc_${pref_surf} -Tsmooth 0 0 -remesh 1",
         "Parameters": {},
         "Used": []
       },
       {
-        "@id": "urn:907eef82-bdc1-44ab-b082-0dfa2a28a026",
+        "@id": "urn:8fe7b445-0304-4ef0-856c-250d561641e8",
         "Label": "1d_tool.py",
-        "AssociatedWith": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "AssociatedWith": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "Command": "1d_tool.py -csim_pthr ${pthr} -csim_alpha ${alpha} -infile ${file_1D}",
         "Parameters": {},
         "Used": [
-          "urn:349bfb32-1123-4a2f-8fe3-09f4f6f984ec"
+          "urn:d496b07a-2b8e-4fb6-94cd-63999e83692a"
         ]
       },
       {
-        "@id": "urn:67e45d40-4521-44a7-9a69-4a557fce1120",
+        "@id": "urn:6edb1340-d225-442b-bb95-c272df01c0da",
         "Label": "plugout_drive",
-        "AssociatedWith": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "AssociatedWith": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "Command": "plugout_drive -echo_edu -npb $portnum -com \"SWITCH_UNDERLAY ${dset_ref:t}\" -com \"SWITCH_OVERLAY ${dset_ttest:t}\" -com \"SET_XHAIRS OFF\" -com \"SET_SUBBRICKS ${subbb}\" -com \"SET_PBAR_ALL -99 1.0 ${cbar}\" -com \"SET_FUNC_ALPHA ${olay_alpha}\" -com \"SET_FUNC_BOXED ${olay_boxed}\" -com \"$coor_type $coors\" -com \"SET_THRESHNEW ${thr}\" -com \"SET_FUNC_VISIBLE +\" -com \"SET_FUNC_RANGE $frange\" -com \"$OW sagittalimage ifrac=${ifrac} opacity=${opac} mont=${mx}x${my}:${gapord[1]}:${mgap}:${mcolor}\" -com \"$OW coronalimage ifrac=${ifrac} opacity=${opac} mont=${mx}x${my}:${gapord[2]}:${mgap}:${mcolor}\" -com \"$OW axialimage ifrac=${ifrac} opacity=${opac} mont=${mx}x${my}:${gapord[3]}:${mgap}:${mcolor}\" &",
         "Parameters": {
           "-echo_edu": true,
@@ -50,23 +50,23 @@
           "-99": "1.0"
         },
         "Used": [
-          "urn:6d0e42e6-fee1-4138-92a2-dc17b126e960"
+          "urn:6faaf304-eef3-4519-9bbf-6acbcf3f74db"
         ]
       },
       {
-        "@id": "urn:20e019c2-47db-4582-bbbf-757165739cfb",
+        "@id": "urn:2ccdf1c9-e316-48ef-a874-202db6a99cb0",
         "Label": "suma",
-        "AssociatedWith": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "AssociatedWith": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "Command": "suma -echo_edu -npb $portnum -onestate -niml -i cc*.k*.gii -vol ${dset_ref} -sv ${dset_ref} &",
         "Parameters": {},
         "Used": [
-          "urn:5a5ed666-cf2f-4213-b4c3-9fb49c784d57"
+          "urn:06218a45-987c-4f75-a5f4-435d2ea0711b"
         ]
       },
       {
-        "@id": "urn:023a2890-483b-47d2-b7f8-7df9cdbe3d0a",
+        "@id": "urn:bb805b8f-6cfc-429c-bb90-ecc678fe02a4",
         "Label": "DriveSuma",
-        "AssociatedWith": "urn:041e9560-07b0-4ac8-84af-83551a8abcd5",
+        "AssociatedWith": "urn:a1be5f37-d9a7-47fd-a1c0-59675f968edb",
         "Command": "DriveSuma -npb $portnum -com viewer_cont -key \"t\" -key \".\" &",
         "Parameters": {
           "-npb": "$portnum",
@@ -78,25 +78,25 @@
     ],
     "Entities": [
       {
-        "@id": "urn:e5f10ca6-7c17-452e-8bb8-60d5ef7cbcbe",
+        "@id": "urn:905e6eb8-4f3a-4882-9f63-f57573383505",
         "Label": "${odir}",
         "AtLocation": "${odir}",
-        "GeneratedBy": "urn:8d09e527-652f-4076-80ce-0cf83cc38ddc",
+        "GeneratedBy": "urn:3d49be80-4c79-4766-92cc-527c8883aeea",
         "digest": {
           "sha256": "b1fc5ec0acec0bf1a5d6697b7f63ed3b4c8e33adcb77445bc544e124ade50c60"
         }
       },
       {
-        "@id": "urn:d93acab0-193e-49b6-a16f-d6b155678698",
+        "@id": "urn:899e1e7d-41f3-4043-bd72-e83b444ed18d",
         "Label": "cc_${pref_surf}",
         "AtLocation": "cc_${pref_surf}",
-        "GeneratedBy": "urn:dbde917c-9ba0-4d04-bd2d-fd2c34c2d061",
+        "GeneratedBy": "urn:15284312-25a6-4da3-ad47-1a67b02f42ff",
         "digest": {
           "sha256": "5e02dacb1f0d92310532c03d04b14d6bdc19634a71800752df6d2e4f1adadf06"
         }
       },
       {
-        "@id": "urn:349bfb32-1123-4a2f-8fe3-09f4f6f984ec",
+        "@id": "urn:d496b07a-2b8e-4fb6-94cd-63999e83692a",
         "Label": "${file_1D}",
         "AtLocation": "${file_1D}",
         "digest": {
@@ -104,7 +104,7 @@
         }
       },
       {
-        "@id": "urn:6d0e42e6-fee1-4138-92a2-dc17b126e960",
+        "@id": "urn:6faaf304-eef3-4519-9bbf-6acbcf3f74db",
         "Label": "portnum",
         "AtLocation": "portnum",
         "digest": {
@@ -112,16 +112,16 @@
         }
       },
       {
-        "@id": "urn:7762d334-53ef-4c9a-8721-c344e757d3bd",
+        "@id": "urn:2c8548b3-08c9-487c-b6dc-eef731a10354",
         "Label": "mcolor",
         "AtLocation": "mcolor",
-        "GeneratedBy": "urn:67e45d40-4521-44a7-9a69-4a557fce1120",
+        "GeneratedBy": "urn:6edb1340-d225-442b-bb95-c272df01c0da",
         "digest": {
           "sha256": "a757facd6497c040401a26469144a2df7ad28984bf0e7688a2f32d607fcd6797"
         }
       },
       {
-        "@id": "urn:5a5ed666-cf2f-4213-b4c3-9fb49c784d57",
+        "@id": "urn:06218a45-987c-4f75-a5f4-435d2ea0711b",
         "Label": "cc*.k*.gii",
         "AtLocation": "cc*.k*.gii",
         "digest": {
diff --git a/examples/from_parsers/afni/narps_do_13_view_zoom_bloc.jsonld b/examples/from_parsers/afni/narps_do_13_view_zoom_bloc.jsonld
index 9c61101e6..a1da5a34c 100644
--- a/examples/from_parsers/afni/narps_do_13_view_zoom_bloc.jsonld
+++ b/examples/from_parsers/afni/narps_do_13_view_zoom_bloc.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:5bd09178-6596-403f-afa9-3c62d7e3b3aa",
+        "@id": "urn:ef2fb089-5fca-41c9-8153-e4ea3c94cbe6",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "AFNI",
@@ -13,36 +13,36 @@
     ],
     "Activities": [
       {
-        "@id": "urn:8067fd08-5f7e-4f27-9136-ac7073d14839",
+        "@id": "urn:e9bde71d-f34d-46ad-bc01-2b70f5087e08",
         "Label": "",
-        "AssociatedWith": "urn:5bd09178-6596-403f-afa9-3c62d7e3b3aa",
+        "AssociatedWith": "urn:ef2fb089-5fca-41c9-8153-e4ea3c94cbe6",
         "Command": "mkdir -p ${odir}; ",
         "Used": []
       },
       {
-        "@id": "urn:fda80bd6-96ea-4376-bd3f-195279a3d29a",
+        "@id": "urn:3abf1821-674f-43d7-bf35-eea0528ecc38",
         "Label": "bloc ...",
-        "AssociatedWith": "urn:5bd09178-6596-403f-afa9-3c62d7e3b3aa",
+        "AssociatedWith": "urn:ef2fb089-5fca-41c9-8153-e4ea3c94cbe6",
         "Command": "IsoSurface -overwrite -isorois+dsets -input ${ivol} -o_gii cc_${pref_surf} -Tsmooth 0 0 -remesh 1; 1d_tool.py -csim_pthr ${pthr} -csim_alpha ${alpha} -infile ${file_1D}; plugout_drive -echo_edu -npb $portnum -com \"SWITCH_UNDERLAY ${dset_ref:t}\" -com \"SWITCH_OVERLAY ${dset_ttest:t}\" -com \"SET_XHAIRS OFF\" -com \"SET_SUBBRICKS ${subbb}\" -com \"SET_PBAR_ALL -99 1.0 ${cbar}\" -com \"SET_FUNC_ALPHA ${olay_alpha}\" -com \"SET_FUNC_BOXED ${olay_boxed}\" -com \"$coor_type $coors\" -com \"SET_THRESHNEW ${thr}\" -com \"SET_FUNC_VISIBLE +\" -com \"SET_FUNC_RANGE $frange\" -com \"$OW sagittalimage ifrac=${ifrac} opacity=${opac} mont=${mx}x${my}:${gapord[1]}:${mgap}:${mcolor}\" -com \"$OW coronalimage ifrac=${ifrac} opacity=${opac} mont=${mx}x${my}:${gapord[2]}:${mgap}:${mcolor}\" -com \"$OW axialimage ifrac=${ifrac} opacity=${opac} mont=${mx}x${my}:${gapord[3]}:${mgap}:${mcolor}\" &; suma -echo_edu -npb $portnum -onestate -niml -i cc*.k*.gii -vol ${dset_ref} -sv ${dset_ref} &; DriveSuma -npb $portnum -com viewer_cont -key \"t\" -key \".\" &; ",
         "Used": [
-          "urn:066760bf-5b60-41cb-bd61-6952c6c84cf5",
-          "urn:b6aa3e9a-7625-4de7-a443-a1d0caffeedb",
-          "urn:a8cb53b6-104c-4d2f-be09-f14150ec2a23"
+          "urn:c2f72589-1f04-4e3e-b32a-d89946bd5ced",
+          "urn:2b9046a4-2675-47b0-b2f6-fbfebe991c68",
+          "urn:ed07977b-6030-4daa-a75e-26c91008b808"
         ]
       }
     ],
     "Entities": [
       {
-        "@id": "urn:1d2c7c93-358b-4b29-8071-c1dd84302329",
+        "@id": "urn:acf8913a-9478-43b6-9eb7-6dcc45e2a69c",
         "Label": "${odir}",
         "AtLocation": "${odir}",
-        "GeneratedBy": "urn:8067fd08-5f7e-4f27-9136-ac7073d14839",
+        "GeneratedBy": "urn:e9bde71d-f34d-46ad-bc01-2b70f5087e08",
         "digest": {
           "sha256": "b1fc5ec0acec0bf1a5d6697b7f63ed3b4c8e33adcb77445bc544e124ade50c60"
         }
       },
       {
-        "@id": "urn:066760bf-5b60-41cb-bd61-6952c6c84cf5",
+        "@id": "urn:c2f72589-1f04-4e3e-b32a-d89946bd5ced",
         "Label": "${file_1D}",
         "AtLocation": "${file_1D}",
         "digest": {
@@ -50,7 +50,7 @@
         }
       },
       {
-        "@id": "urn:b6aa3e9a-7625-4de7-a443-a1d0caffeedb",
+        "@id": "urn:2b9046a4-2675-47b0-b2f6-fbfebe991c68",
         "Label": "portnum",
         "AtLocation": "portnum",
         "digest": {
@@ -58,7 +58,7 @@
         }
       },
       {
-        "@id": "urn:a8cb53b6-104c-4d2f-be09-f14150ec2a23",
+        "@id": "urn:ed07977b-6030-4daa-a75e-26c91008b808",
         "Label": "cc*.k*.gii",
         "AtLocation": "cc*.k*.gii",
         "digest": {
@@ -66,19 +66,19 @@
         }
       },
       {
-        "@id": "urn:a3534236-e1a6-40b2-8f8f-b033d89a9d0d",
+        "@id": "urn:10560f83-0a91-456e-9358-48a8a5ea215a",
         "Label": "cc_${pref_surf}",
         "AtLocation": "cc_${pref_surf}",
-        "GeneratedBy": "urn:fda80bd6-96ea-4376-bd3f-195279a3d29a",
+        "GeneratedBy": "urn:3abf1821-674f-43d7-bf35-eea0528ecc38",
         "digest": {
           "sha256": "5e02dacb1f0d92310532c03d04b14d6bdc19634a71800752df6d2e4f1adadf06"
         }
       },
       {
-        "@id": "urn:67ddf102-3107-48cc-8e31-7c0c68f9e8f7",
+        "@id": "urn:25d73731-5632-459e-8971-ccf6f4acf1c3",
         "Label": "mcolor",
         "AtLocation": "mcolor",
-        "GeneratedBy": "urn:fda80bd6-96ea-4376-bd3f-195279a3d29a",
+        "GeneratedBy": "urn:3abf1821-674f-43d7-bf35-eea0528ecc38",
         "digest": {
           "sha256": "a757facd6497c040401a26469144a2df7ad28984bf0e7688a2f32d607fcd6797"
         }
diff --git a/examples/from_parsers/context_2023_09_19_07h10m28s.txt b/examples/from_parsers/context_2023_09_28_14h52m54s.txt
similarity index 98%
rename from examples/from_parsers/context_2023_09_19_07h10m28s.txt
rename to examples/from_parsers/context_2023_09_28_14h52m54s.txt
index 01db51c80..b993d82dd 100644
--- a/examples/from_parsers/context_2023_09_19_07h10m28s.txt
+++ b/examples/from_parsers/context_2023_09_28_14h52m54s.txt
@@ -1,72 +1,72 @@
-Date : 2023_09_19_07h10m28s
+Date : 2023_09_28_14h52m54s
 Processing files...
-    file= nidmresults-examples/afni_alt_onesided_proc.sub_001
-    file= nidmresults-examples/afni_alt_onesided_proc.sub_001
-    file= nidmresults-examples/afni_thr_voxelunct4_proc.sub_001
-    file= nidmresults-examples/afni_thr_voxelunct4_proc.sub_001
-    file= nidmresults-examples/spm_thr_voxelunct4_batch.m
-    file= nidmresults-examples/afni_gam_proc.sub_001
-    file= nidmresults-examples/afni_gam_proc.sub_001
-    file= nidmresults-examples/fsl_con_f_report_log.html
-    file= nidmresults-examples/fsl_contrast_mask_report_log.html
+    file= nidmresults-examples/fsl_group_ols_report_log.html
     file= nidmresults-examples/spm_thr_voxelfwep05_batch.m
-    file= nidmresults-examples/fsl_default_report_log.html
+    file= nidmresults-examples/spm_thr_voxelfdrp05_batch.m
+    file= nidmresults-examples/fsl_thr_voxelfwep05_report_log.html
+    file= nidmresults-examples/spm_temporal_derivative_batch.m
+    file= nidmresults-examples/spm_thr_clustfwep05_batch.m
+    file= nidmresults-examples/afni_hrf_gammadiff_proc.sub_001
+    file= nidmresults-examples/afni_hrf_gammadiff_proc.sub_001
+    file= nidmresults-examples/fsl_contrast_mask_report_log.html
+    file= nidmresults-examples/afni_con_f_proc.sub_001
+    file= nidmresults-examples/afni_con_f_proc.sub_001
+    file= nidmresults-examples/spm_group_wls_batch.m
     file= nidmresults-examples/fsl_motion_reg_der_report_log.html
-    file= nidmresults-examples/spm_conjunction_batch.m
-    file= nidmresults-examples/spm_explicit_mask_batch.m
-    file= nidmresults-examples/fsl_motion_reg_report_log.html
     file= nidmresults-examples/narps_do_02_pc_with_sign0.tcsh
     file= nidmresults-examples/narps_do_02_pc_with_sign0.tcsh
-    file= nidmresults-examples/afni_hrf_gammadiff_proc.sub_001
-    file= nidmresults-examples/afni_hrf_gammadiff_proc.sub_001
-    file= nidmresults-examples/spm_temporal_derivative_batch.m
-    file= nidmresults-examples/narps_do_04_make_imgs_A.tcsh
-    file= nidmresults-examples/narps_do_04_make_imgs_A.tcsh
-    file= nidmresults-examples/spm_thr_clustunck10_batch.m
-    file= nidmresults-examples/fsl_gamma_basis_report_log.html
-    file= nidmresults-examples/fsl_group_wls_report_log.html
+    file= nidmresults-examples/afni_thr_clustunck10_proc.sub_001
+    file= nidmresults-examples/afni_thr_clustunck10_proc.sub_001
     file= nidmresults-examples/afni_thr_voxelfdrp05_proc.sub_001
     file= nidmresults-examples/afni_thr_voxelfdrp05_proc.sub_001
+    file= nidmresults-examples/spm_con_f_batch.m
+    file= nidmresults-examples/spm_contrast_mask_batch.m
+    file= nidmresults-examples/narps_do_13_view_zoom.tcsh
+    file= nidmresults-examples/narps_do_13_view_zoom.tcsh
+    file= nidmresults-examples/spm_hrf_fir_batch.m
     file= nidmresults-examples/fsl_group_btw_report_log.html
     file= nidmresults-examples/fsl_gaussian_report_log.html
-    file= nidmresults-examples/fsl_hrf_gammadiff_report_log.html
+    file= nidmresults-examples/fsl_motion_reg_report_log.html
+    file= nidmresults-examples/afni_gam_proc.sub_001
+    file= nidmresults-examples/afni_gam_proc.sub_001
+    file= nidmresults-examples/spm_thr_clustunck10_batch.m
+    file= nidmresults-examples/spm_HRF_informed_basis_batch.m
+    file= nidmresults-examples/afni_thr_voxelunct4_proc.sub_001
+    file= nidmresults-examples/afni_thr_voxelunct4_proc.sub_001
+    file= nidmresults-examples/afni_alt_onesided_proc.sub_001
+    file= nidmresults-examples/afni_alt_onesided_proc.sub_001
+    file= nidmresults-examples/spm_non_sphericity_batch.m
+    file= nidmresults-examples/spm_thr_voxelunct4_batch.m
+    file= nidmresults-examples/fsl_thr_clustfwep05_report_log.html
+    file= nidmresults-examples/spm_default_batch.m
+    file= nidmresults-examples/fsl_gamma_basis_report_log.html
     file= nidmresults-examples/afni_thr_clustfwep05_proc.sub_001
     file= nidmresults-examples/afni_thr_clustfwep05_proc.sub_001
-    file= nidmresults-examples/fsl_thr_clustfwep05_report_log.html
-    file= nidmresults-examples/spm_hrf_fir_batch.m
-    file= nidmresults-examples/afni_hrf_tent_proc.sub_001
-    file= nidmresults-examples/afni_hrf_tent_proc.sub_001
-    file= nidmresults-examples/afni_thr_clustunck10_proc.sub_001
-    file= nidmresults-examples/afni_thr_clustunck10_proc.sub_001
+    file= nidmresults-examples/narps_do_04_make_imgs_A.tcsh
+    file= nidmresults-examples/narps_do_04_make_imgs_A.tcsh
+    file= nidmresults-examples/fsl_full_examples001_report_log.html
     file= nidmresults-examples/afni_clustconn_26_proc.sub_001
     file= nidmresults-examples/afni_clustconn_26_proc.sub_001
-    file= nidmresults-examples/fsl_con_f_multiple_report_log.html
-    file= nidmresults-examples/afni_clustconn_18_proc.sub_001
-    file= nidmresults-examples/afni_clustconn_18_proc.sub_001
-    file= nidmresults-examples/fsl_hrf_fir_report_log.html
-    file= nidmresults-examples/fsl_full_examples001_report_log.html
-    file= nidmresults-examples/spm_contrast_mask_batch.m
-    file= nidmresults-examples/spm_thr_clustfwep05_batch.m
-    file= nidmresults-examples/afni_bi_sided_t_test_proc.sub_001
-    file= nidmresults-examples/afni_bi_sided_t_test_proc.sub_001
-    file= nidmresults-examples/fsl_group_ols_report_log.html
-    file= nidmresults-examples/afni_con_f_proc.sub_001
-    file= nidmresults-examples/afni_con_f_proc.sub_001
-    file= nidmresults-examples/spm_partial_conjunction_batch.m
-    file= nidmresults-examples/spm_thr_voxelfdrp05_batch.m
-    file= nidmresults-examples/spm_con_f_batch.m
+    file= nidmresults-examples/fsl_hrf_gammadiff_report_log.html
+    file= nidmresults-examples/afni_hrf_tent_proc.sub_001
+    file= nidmresults-examples/afni_hrf_tent_proc.sub_001
+    file= nidmresults-examples/fsl_default_report_log.html
+    file= nidmresults-examples/fsl_con_f_report_log.html
     file= nidmresults-examples/spm_group_ols_batch.m
-    file= nidmresults-examples/spm_default_batch.m
     file= nidmresults-examples/afni_other_template_proc.sub_001
     file= nidmresults-examples/afni_other_template_proc.sub_001
-    file= nidmresults-examples/narps_do_13_view_zoom.tcsh
-    file= nidmresults-examples/narps_do_13_view_zoom.tcsh
-    file= nidmresults-examples/fsl_thr_voxelfwep05_report_log.html
-    file= nidmresults-examples/spm_non_sphericity_batch.m
-    file= nidmresults-examples/spm_HRF_informed_basis_batch.m
+    file= nidmresults-examples/fsl_con_f_multiple_report_log.html
+    file= nidmresults-examples/spm_conjunction_batch.m
     file= nidmresults-examples/spm_2_t_test_batch.m
-    file= nidmresults-examples/spm_covariate_batch.m
+    file= nidmresults-examples/spm_partial_conjunction_batch.m
     file= nidmresults-examples/afni_default_proc.sub_001
     file= nidmresults-examples/afni_default_proc.sub_001
-    file= nidmresults-examples/spm_group_wls_batch.m
-End of processed files. Results in dir : 'examples/from_parsers'. Time required: 0:00:03.037533
+    file= nidmresults-examples/fsl_group_wls_report_log.html
+    file= nidmresults-examples/spm_explicit_mask_batch.m
+    file= nidmresults-examples/afni_clustconn_18_proc.sub_001
+    file= nidmresults-examples/afni_clustconn_18_proc.sub_001
+    file= nidmresults-examples/afni_bi_sided_t_test_proc.sub_001
+    file= nidmresults-examples/afni_bi_sided_t_test_proc.sub_001
+    file= nidmresults-examples/fsl_hrf_fir_report_log.html
+    file= nidmresults-examples/spm_covariate_batch.m
+End of processed files. Results in dir : 'examples/from_parsers'. Time required: 0:01:49.296627
diff --git a/examples/from_parsers/fsl/fsl_con_f_multiple_report_log.jsonld b/examples/from_parsers/fsl/fsl_con_f_multiple_report_log.jsonld
index 439a0d1da..693151185 100644
--- a/examples/from_parsers/fsl/fsl_con_f_multiple_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_con_f_multiple_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
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-          "urn:fee67aaa-0c67-496a-8d33-670b4d2ae6b8"
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         "Label": "pngappend",
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         "Used": [
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         "Label": "slicer",
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         "Used": [
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         "Label": "pngappend",
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         "Used": [
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         "Label": "pngappend",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/pngappend highres2standard1.png highres2standard2.png highres2standard.png",
         "Used": [
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-          "urn:4d43a36a-2f9a-4350-aa97-f0cdd03fc576"
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       {
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         "Label": "rm",
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+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/bin/rm -f sl?.png highres2standard2.png",
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-          "urn:4d43a36a-2f9a-4350-aa97-f0cdd03fc576"
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       {
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         "Label": "rm",
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+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/bin/rm highres2standard1.png",
         "Used": [
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+          "urn:b1782bbc-0ad8-4cf5-a5ce-d586bc629dfa"
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       {
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         "Label": "convert_xfm",
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+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/convert_xfm -omat example_func2standard.mat -concat highres2standard.mat example_func2highres.mat",
         "Used": [
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+          "urn:717c4883-95a6-438b-a1e4-8cb4424a168c"
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       {
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         "Label": "flirt",
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       {
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         "Label": "convert_xfm",
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-          "urn:fee67aaa-0c67-496a-8d33-670b4d2ae6b8"
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         "Label": "pngappend",
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         "Used": [
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         "Used": [
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         "Label": "pngappend",
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         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster -i thresh_zfstat3 -t 3.090232 --othresh=thresh_zfstat3 -o cluster_mask_zfstat3 --connectivity=26  --olmax=lmax_zfstat3.txt --scalarname=Z --voxuncthresh > cluster_zfstat3.txt",
         "Used": [
-          "urn:442666e8-e2d2-433a-95af-f6c9290f625d"
+          "urn:1662b1a2-1679-4d8d-b615-c41a992926ca"
         ]
       },
       {
-        "@id": "urn:5f654627-6b77-4c10-801f-0e3ed2cfe857",
+        "@id": "urn:8c6a8fad-4a10-4e63-902e-cb713291e98b",
         "Label": "cluster2html",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster2html . cluster_zfstat3",
         "Used": [
-          "urn:80914d4d-105b-4df0-80a9-5532aa1c7b13"
+          "urn:debeb16c-5b95-4d17-bf55-7b5f67d88815"
         ]
       },
       {
-        "@id": "urn:3181950d-f9a7-408e-945c-c9b5103e06a7",
+        "@id": "urn:ac72bb00-f067-43c0-93f1-c19535495c63",
         "Label": "ptoz",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/ptoz 0.001",
         "Used": []
       },
       {
-        "@id": "urn:3681abf1-32d8-4428-a583-4af13b61f24e",
+        "@id": "urn:2a27b562-f2c8-4d65-87e7-8324ee4b0b9a",
         "Label": "cluster",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 3.090232   -d 0.70114 --volume=38352 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zstat1_std.txt --scalarname=Z  --voxuncthresh > cluster_zstat1_std.txt",
         "Used": [
-          "urn:f00f6f70-9f59-463a-9315-37ec75568f19",
-          "urn:216ca191-cc14-4478-a738-9d618364793e"
+          "urn:38c32689-25e4-4616-a55f-99f621b66dae",
+          "urn:cdc2d3c8-eace-4a0f-99ee-54b0afbb95e0"
         ]
       },
       {
-        "@id": "urn:e3b4c9b6-c534-42ec-b134-a78421c8db3e",
+        "@id": "urn:0a2bd5ea-a64e-42a0-ae31-150e7a1257b4",
         "Label": "cluster2html",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster2html . cluster_zstat1 -std",
         "Used": [
-          "urn:ddbcadc3-a07f-4755-92ba-7f9ada079b4b"
+          "urn:40d467e3-1a17-401c-a6fe-fc6b2df21dfd"
         ]
       },
       {
-        "@id": "urn:7e255ee1-b542-4024-a4b3-323d68b5d8c3",
+        "@id": "urn:cf18c935-d808-4855-94c8-ab1e8af5e711",
         "Label": "cluster",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 3.090232   -d 0.70114 --volume=38352 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zstat2_std.txt --scalarname=Z  --voxuncthresh > cluster_zstat2_std.txt",
         "Used": [
-          "urn:1d7a4ec0-2249-4112-a18f-ca536b5e4146",
-          "urn:514b6380-1b32-4118-8264-87546493d9db"
+          "urn:50551edf-7b41-4868-96c8-6f50ef1afcc5",
+          "urn:dd90df62-1518-4a69-b1cd-6b31c2c95e2f"
         ]
       },
       {
-        "@id": "urn:6ef22af4-3ce3-4db5-9551-9b22e7d65ad8",
+        "@id": "urn:d9c5d9f6-d211-47e7-993d-ca16b373b789",
         "Label": "cluster2html",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster2html . cluster_zstat2 -std",
         "Used": [
-          "urn:dd2943db-d18f-4c3b-b091-b2392fb26750"
+          "urn:af09e210-3d42-4ab8-881e-63b8a79ac26f"
         ]
       },
       {
-        "@id": "urn:4aa4cd22-277d-4275-a53e-46b3d6ae63b5",
+        "@id": "urn:b25b166c-87b5-473b-a60f-ad6c25f3622e",
         "Label": "cluster",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster -i thresh_zfstat1  -t 3.090232   -d 0.70114 --volume=38352 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zfstat1_std.txt --scalarname=Z  --voxuncthresh > cluster_zfstat1_std.txt",
         "Used": [
-          "urn:49db383a-f7ce-4b02-b18a-301f09f8ca2e"
+          "urn:5ecde4d0-c081-4835-aa9f-906b48bc746d"
         ]
       },
       {
-        "@id": "urn:23668e55-7db2-419a-ad69-9ebf9d5e2af3",
+        "@id": "urn:8a3f7a24-c685-4532-be83-851ae63ca6ad",
         "Label": "cluster2html",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster2html . cluster_zfstat1 -std",
         "Used": [
-          "urn:20d47a60-b70e-40c7-8a9e-d71225be39f2"
+          "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a"
         ]
       },
       {
-        "@id": "urn:64fe3794-20dd-46e0-90fc-56a8b309c17d",
+        "@id": "urn:25ae9bf9-095e-447e-a614-2c4608c5a78a",
         "Label": "cluster",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster -i thresh_zfstat2  -t 3.090232   -d 0.70114 --volume=38352 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zfstat2_std.txt --scalarname=Z  --voxuncthresh > cluster_zfstat2_std.txt",
         "Used": [
-          "urn:8f056e6d-ce22-46c1-8a64-9b84414f4382"
+          "urn:18e2f45e-748e-4659-9dd3-fd58912f36ba"
         ]
       },
       {
-        "@id": "urn:fb75466c-ea45-4159-9173-2a92b7963d0a",
+        "@id": "urn:944ad4a8-6abe-44bb-835f-307b53b5e187",
         "Label": "cluster2html",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster2html . cluster_zfstat2 -std",
         "Used": [
-          "urn:c82523a5-fbd2-4815-82e4-409059edea30"
+          "urn:6f371063-f2c7-47dd-8a3b-6d0d986e115e"
         ]
       },
       {
-        "@id": "urn:b4a0c70b-b21e-4841-9aa4-9162e50e00f8",
+        "@id": "urn:3a2c9ee8-541c-4bc9-8e5b-13a00b8688c7",
         "Label": "cluster",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster -i thresh_zfstat3  -t 3.090232   -d 0.70114 --volume=38352 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zfstat3_std.txt --scalarname=Z  --voxuncthresh > cluster_zfstat3_std.txt",
         "Used": [
-          "urn:442666e8-e2d2-433a-95af-f6c9290f625d"
+          "urn:1662b1a2-1679-4d8d-b615-c41a992926ca"
         ]
       },
       {
-        "@id": "urn:a6e8a9af-35b9-4280-a896-19c0ba402b50",
+        "@id": "urn:a1f10b4f-25b3-4000-b3f6-31730c142bdc",
         "Label": "cluster2html",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/cluster2html . cluster_zfstat3 -std",
         "Used": [
-          "urn:80914d4d-105b-4df0-80a9-5532aa1c7b13"
+          "urn:debeb16c-5b95-4d17-bf55-7b5f67d88815"
         ]
       },
       {
-        "@id": "urn:3c93a0f8-9da1-4d13-8f7b-06e36b99e86e",
+        "@id": "urn:20c82882-8ba2-4c91-9eb1-ab785bfec6fb",
         "Label": "fslstats",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null",
         "Used": [
-          "urn:f00f6f70-9f59-463a-9315-37ec75568f19"
+          "urn:cdc2d3c8-eace-4a0f-99ee-54b0afbb95e0"
         ]
       },
       {
-        "@id": "urn:77fed1bd-e7f7-40bf-b2fc-4db30628b65e",
+        "@id": "urn:adee1c78-e6cf-4a0e-9264-2ceaceb54ee0",
         "Label": "fslstats",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null",
         "Used": [
-          "urn:1d7a4ec0-2249-4112-a18f-ca536b5e4146"
+          "urn:dd90df62-1518-4a69-b1cd-6b31c2c95e2f"
         ]
       },
       {
-        "@id": "urn:b277d6f4-0e05-454d-83ee-8ebd8be563a8",
+        "@id": "urn:4a83669a-6fc8-4866-a4cb-b74c48b8c2f5",
         "Label": "fslstats",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/fslstats thresh_zfstat1 -l 0.0001 -R 2>/dev/null",
         "Used": [
-          "urn:49db383a-f7ce-4b02-b18a-301f09f8ca2e"
+          "urn:5ecde4d0-c081-4835-aa9f-906b48bc746d"
         ]
       },
       {
-        "@id": "urn:05d99bd1-1aa9-452a-9162-19459c4a4c71",
+        "@id": "urn:84a2fd0f-cef6-4ec3-a2b4-defce849f38f",
         "Label": "fslstats",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/fslstats thresh_zfstat2 -l 0.0001 -R 2>/dev/null",
         "Used": [
-          "urn:8f056e6d-ce22-46c1-8a64-9b84414f4382"
+          "urn:18e2f45e-748e-4659-9dd3-fd58912f36ba"
         ]
       },
       {
-        "@id": "urn:7da2e5ed-45c6-4bef-bbe6-aefef427df2c",
+        "@id": "urn:992191e6-cd54-483e-90d3-3b177bf40e12",
         "Label": "fslstats",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/fslstats thresh_zfstat3 -l 0.0001 -R 2>/dev/null",
         "Used": [
-          "urn:442666e8-e2d2-433a-95af-f6c9290f625d"
+          "urn:1662b1a2-1679-4d8d-b615-c41a992926ca"
         ]
       },
       {
-        "@id": "urn:c1887097-aa8e-4ded-9839-159c05a8ff2c",
+        "@id": "urn:329d09d5-6a12-4729-a722-c6dc26a2fbe5",
         "Label": "overlay",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/overlay 1 0 example_func -a thresh_zstat1 3.090250 7.488793 rendered_thresh_zstat1",
         "Used": []
       },
       {
-        "@id": "urn:3e5999d6-e31d-4abf-be04-504c748c06aa",
+        "@id": "urn:d809c990-23f3-4601-80f6-06be25447e95",
         "Label": "slicer",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png",
         "Used": [
-          "urn:111fbef2-a325-48ad-b79a-d9df47e8b19f"
+          "urn:e6da214d-7f37-4bda-a731-0c7458945ec7"
         ]
       },
       {
-        "@id": "urn:62724743-d128-48d9-b0a9-b8bb0f6800ac",
+        "@id": "urn:905e675b-0242-43eb-9763-4908abbe7de9",
         "Label": "cp",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/bin/cp /usr/local/packages/fsl-5.0.8/etc/luts/ramp.gif .ramp.gif",
         "Used": [
-          "urn:4dc7b638-37ac-46f6-88e5-3e711bd3a4cc"
+          "urn:3c6eaf78-bf2e-4231-a5e7-82ef6217fe8c"
         ]
       },
       {
-        "@id": "urn:0ed6b3ac-dce1-4927-93ac-a8a05131d6c8",
+        "@id": "urn:868803d2-f2c9-45ad-98ae-215da048aed3",
         "Label": "overlay",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/overlay 1 0 example_func -a thresh_zstat2 3.090250 7.488793 rendered_thresh_zstat2",
         "Used": []
       },
       {
-        "@id": "urn:1bd62035-1ac7-4b81-927d-358b4ce0cb7d",
+        "@id": "urn:b9336d7f-7863-4a9c-bda6-7cfde4a6b9e8",
         "Label": "slicer",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png",
         "Used": [
-          "urn:7e5f43ce-add3-40a5-9912-007b2ad1623a"
+          "urn:7f84ea18-06fe-4c30-89d2-ddfcf648b295"
         ]
       },
       {
-        "@id": "urn:be1edb32-3e58-45fa-a6af-df2d560cc972",
+        "@id": "urn:2bcdf477-8b44-4542-9267-198f2aae6231",
         "Label": "overlay",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/overlay 1 0 example_func -a thresh_zfstat1 3.090250 7.488793 rendered_thresh_zfstat1",
         "Used": []
       },
       {
-        "@id": "urn:7f0c37a4-8362-411a-9cab-3f45e445a60d",
+        "@id": "urn:3ba5cd1f-fdfc-400a-a1ae-227bdfe70c50",
         "Label": "slicer",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/slicer rendered_thresh_zfstat1 -A 750 rendered_thresh_zfstat1.png",
         "Used": [
-          "urn:28c080bc-7f9b-47fe-910f-db1304870e68"
+          "urn:e44fb4cb-778d-41e7-9cbc-5d6cc1a73c68"
         ]
       },
       {
-        "@id": "urn:bbb6d66a-dbf7-476c-960f-a8b504905c26",
+        "@id": "urn:e6575988-076c-4dac-868c-1cba20f3c597",
         "Label": "overlay",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/overlay 1 0 example_func -a thresh_zfstat2 3.090250 7.488793 rendered_thresh_zfstat2",
         "Used": []
       },
       {
-        "@id": "urn:5c158d02-850a-4940-8969-7bcebd489cc2",
+        "@id": "urn:231abdc8-7275-44f3-86b3-b8cd318f4207",
         "Label": "slicer",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/slicer rendered_thresh_zfstat2 -A 750 rendered_thresh_zfstat2.png",
         "Used": [
-          "urn:e90526a2-5e07-4577-bf55-41f45dfa6fc8"
+          "urn:183fa34a-9df4-4380-85c5-75f4e62fa9cc"
         ]
       },
       {
-        "@id": "urn:4752a95b-fa74-4f9d-90b6-54cd74bf4c5e",
+        "@id": "urn:65603e13-f0b7-4788-91a0-dff5363681c9",
         "Label": "overlay",
-        "AssociatedWith": "urn:0e73fabf-9e09-4b08-a8b7-b3db9968479e",
+        "AssociatedWith": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
         "Command": "/usr/local/packages/fsl-5.0.8/bin/overlay 1 0 example_func -a thresh_zfstat3 3.090250 7.488793 rendered_thresh_zfstat3",
         "Used": []
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@@ -1505,565 +1505,565 @@
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@@ -2071,7 +2071,7 @@
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@@ -2079,7 +2079,7 @@
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@@ -2087,7 +2087,7 @@
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@@ -2095,7 +2095,7 @@
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@@ -2103,7 +2103,7 @@
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@@ -2111,34 +2111,34 @@
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@@ -2146,34 +2146,34 @@
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@@ -2181,106 +2181,106 @@
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@@ -2288,25 +2288,25 @@
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@@ -2314,16 +2314,16 @@
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@@ -2331,22 +2331,22 @@
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@@ -2354,13 +2354,13 @@
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@@ -2368,16 +2368,16 @@
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@@ -2385,16 +2385,16 @@
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+        "@id": "urn:cdc2d3c8-eace-4a0f-99ee-54b0afbb95e0",
         "Label": "thresh_zstat1",
         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:776e5668-c60d-4388-8c68-0ed9953b0a58",
+        "GeneratedBy": "urn:b68b9bc1-27cc-4c62-9d49-e1f70f7aa3a0",
         "digest": {
           "sha256": "662e7ba670e124d15bb3cc18b818868f76604578034b524c8882f35fc5db413f"
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       {
-        "@id": "urn:c4d758c0-3816-4dbd-b832-1268d95dba11",
+        "@id": "urn:7052b74a-50e0-439c-81df-db12832c1a44",
         "Label": "zstat2",
         "AtLocation": "stats/zstat2",
         "digest": {
@@ -2402,16 +2402,16 @@
         }
       },
       {
-        "@id": "urn:1d7a4ec0-2249-4112-a18f-ca536b5e4146",
+        "@id": "urn:dd90df62-1518-4a69-b1cd-6b31c2c95e2f",
         "Label": "thresh_zstat2",
         "AtLocation": "thresh_zstat2",
-        "GeneratedBy": "urn:a86a5837-5244-4c5e-8fec-d26819394d32",
+        "GeneratedBy": "urn:a906578f-aa09-42aa-aab9-8716786196b3",
         "digest": {
           "sha256": "fe707ed68d72f4376668be45a2030f2d00fa81534a3e95bf92b6a499fa8595bd"
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       {
-        "@id": "urn:26057a7a-635e-49cb-b254-4df7011e5db4",
+        "@id": "urn:96707788-783b-4a32-88cc-425b7e5cc0a2",
         "Label": "zfstat1",
         "AtLocation": "stats/zfstat1",
         "digest": {
@@ -2419,16 +2419,16 @@
         }
       },
       {
-        "@id": "urn:49db383a-f7ce-4b02-b18a-301f09f8ca2e",
+        "@id": "urn:5ecde4d0-c081-4835-aa9f-906b48bc746d",
         "Label": "thresh_zfstat1",
         "AtLocation": "thresh_zfstat1",
-        "GeneratedBy": "urn:be53f424-1517-47d3-9eb0-815c5bd21f4f",
+        "GeneratedBy": "urn:cd620add-4300-4d26-8e71-f9bd37cb0b8e",
         "digest": {
           "sha256": "e4e927e247bdf8ff3b58b41cbb9db7643b27df1f7578c506950eb4b1ca2d0031"
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       {
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+        "@id": "urn:e5b6247c-0f74-4751-939f-af60b86ae6ca",
         "Label": "zfstat2",
         "AtLocation": "stats/zfstat2",
         "digest": {
@@ -2436,16 +2436,16 @@
         }
       },
       {
-        "@id": "urn:8f056e6d-ce22-46c1-8a64-9b84414f4382",
+        "@id": "urn:18e2f45e-748e-4659-9dd3-fd58912f36ba",
         "Label": "thresh_zfstat2",
         "AtLocation": "thresh_zfstat2",
-        "GeneratedBy": "urn:53290d6f-b334-45f8-8be9-24c36e53bf4f",
+        "GeneratedBy": "urn:af85eb98-f60a-48ca-85fc-72ebed7a0c95",
         "digest": {
           "sha256": "c298297997e4640c4c2d803314ca8cee706d302781975cdc53946aa6ca0d69c1"
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       {
-        "@id": "urn:fe869478-f885-406d-955b-bad539f054b8",
+        "@id": "urn:75c61345-a8ea-4382-bfdb-d6d0c98ed84c",
         "Label": "zfstat3",
         "AtLocation": "stats/zfstat3",
         "digest": {
@@ -2453,16 +2453,16 @@
         }
       },
       {
-        "@id": "urn:442666e8-e2d2-433a-95af-f6c9290f625d",
+        "@id": "urn:1662b1a2-1679-4d8d-b615-c41a992926ca",
         "Label": "thresh_zfstat3",
         "AtLocation": "thresh_zfstat3",
-        "GeneratedBy": "urn:252da241-915a-4ff5-9164-23b45d8b6adb",
+        "GeneratedBy": "urn:dfea9359-ff55-4f9f-80a3-b053d6b53085",
         "digest": {
           "sha256": "d146fc312c5094abf2cb41add06d96d79e5f36d27a64adea95365e8776a3707d"
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       {
-        "@id": "urn:216ca191-cc14-4478-a738-9d618364793e",
+        "@id": "urn:38c32689-25e4-4616-a55f-99f621b66dae",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
         "digest": {
@@ -2470,25 +2470,25 @@
         }
       },
       {
-        "@id": "urn:375dfc81-5906-4f37-869d-a5f3d511c1f1",
+        "@id": "urn:48891029-b785-4f4f-8860-7054ddcf78ca",
         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:c7d2df71-a316-4e17-bddc-87b27b72082b",
+        "GeneratedBy": "urn:932fc7fe-6a48-438b-9df6-9a150e9142d3",
         "digest": {
           "sha256": "b28c170e33d2917cac55183786616a9e976e5e7f30dc7c8666341f12ed6d0277"
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       {
-        "@id": "urn:f6ff0b38-f70a-4a10-b2da-eddaa63ba9d7",
+        "@id": "urn:854a0da7-0140-4007-b23a-63c8036c2338",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:c7d2df71-a316-4e17-bddc-87b27b72082b",
+        "GeneratedBy": "urn:932fc7fe-6a48-438b-9df6-9a150e9142d3",
         "digest": {
           "sha256": "bf3b603569da6dbe3d6f0e8667d346f3ac943c9d01d2fc9743ce17abeb1547fb"
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       {
-        "@id": "urn:ddbcadc3-a07f-4755-92ba-7f9ada079b4b",
+        "@id": "urn:40d467e3-1a17-401c-a6fe-fc6b2df21dfd",
         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -2496,7 +2496,7 @@
         }
       },
       {
-        "@id": "urn:514b6380-1b32-4118-8264-87546493d9db",
+        "@id": "urn:50551edf-7b41-4868-96c8-6f50ef1afcc5",
         "Label": "cope2",
         "AtLocation": "stats/cope2",
         "digest": {
@@ -2504,25 +2504,25 @@
         }
       },
       {
-        "@id": "urn:bbc5cfa9-fc2a-4a19-b7cd-6eff9a5300b2",
+        "@id": "urn:bc4ed7c6-6801-4fc5-8242-4cca359734a6",
         "Label": "cluster_mask_zstat2",
         "AtLocation": "cluster_mask_zstat2",
-        "GeneratedBy": "urn:0d20d783-5c33-47b9-acc0-d7c6c576fd63",
+        "GeneratedBy": "urn:6c7c5ceb-8f8a-4126-931f-3e45b2fc80f0",
         "digest": {
           "sha256": "b88bb3cd4d809827a5c0a45cb4f6aac570cb25b7e056d5986d81d879548da121"
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       {
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+        "@id": "urn:abaf539c-8c53-4d5b-81dd-c5c8dd66cef5",
         "Label": "cope2",
         "AtLocation": "stats/cope2",
-        "GeneratedBy": "urn:0d20d783-5c33-47b9-acc0-d7c6c576fd63",
+        "GeneratedBy": "urn:6c7c5ceb-8f8a-4126-931f-3e45b2fc80f0",
         "digest": {
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       {
-        "@id": "urn:dd2943db-d18f-4c3b-b091-b2392fb26750",
+        "@id": "urn:af09e210-3d42-4ab8-881e-63b8a79ac26f",
         "Label": "cluster_zstat2",
         "AtLocation": "cluster_zstat2",
         "digest": {
@@ -2530,16 +2530,16 @@
         }
       },
       {
-        "@id": "urn:62757c28-bbaf-44ef-b41d-fba68148f8c4",
+        "@id": "urn:544d0fc1-89f3-4a63-b15c-b845ef1a2a66",
         "Label": "cluster_mask_zfstat1",
         "AtLocation": "cluster_mask_zfstat1",
-        "GeneratedBy": "urn:20d7226b-7089-4352-88b4-b3487a187c19",
+        "GeneratedBy": "urn:fff5c382-53bd-4b97-a58a-1fe3dbded5df",
         "digest": {
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       {
-        "@id": "urn:20d47a60-b70e-40c7-8a9e-d71225be39f2",
+        "@id": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
         "Label": "cluster_zfstat1",
         "AtLocation": "cluster_zfstat1",
         "digest": {
@@ -2547,16 +2547,16 @@
         }
       },
       {
-        "@id": "urn:876868d9-b90c-4dbe-b1c0-e8081a6b5783",
+        "@id": "urn:3629a684-e3d0-4d02-b46c-ba0aa897ca06",
         "Label": "cluster_mask_zfstat2",
         "AtLocation": "cluster_mask_zfstat2",
-        "GeneratedBy": "urn:2906ce55-4d86-46f2-b57b-d2e79a77c30c",
+        "GeneratedBy": "urn:5bcbb31a-da10-4a45-b7eb-04dac91e5b3c",
         "digest": {
           "sha256": "962ef7014f226d586c47fb23ebcde5968e55a03f06dae8514b358579d8457e7a"
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       {
-        "@id": "urn:c82523a5-fbd2-4815-82e4-409059edea30",
+        "@id": "urn:6f371063-f2c7-47dd-8a3b-6d0d986e115e",
         "Label": "cluster_zfstat2",
         "AtLocation": "cluster_zfstat2",
         "digest": {
@@ -2564,16 +2564,16 @@
         }
       },
       {
-        "@id": "urn:edc4d342-e3a2-4a70-9590-c7cd4293922d",
+        "@id": "urn:384ac647-9ad8-446d-b8a7-23ec3b5875b1",
         "Label": "cluster_mask_zfstat3",
         "AtLocation": "cluster_mask_zfstat3",
-        "GeneratedBy": "urn:b1dfae7b-a755-4880-bb1b-2943bb5dabe6",
+        "GeneratedBy": "urn:49ef5b81-19e3-4c4e-b711-c5adb8849ec0",
         "digest": {
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       {
-        "@id": "urn:80914d4d-105b-4df0-80a9-5532aa1c7b13",
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         "Label": "cluster_zfstat3",
         "AtLocation": "cluster_zfstat3",
         "digest": {
@@ -2581,88 +2581,88 @@
         }
       },
       {
-        "@id": "urn:1b6bc660-3002-4209-b970-2bf3816c16f7",
+        "@id": "urn:ae29f890-cf49-4621-9cbe-6eeeab313c8e",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:3681abf1-32d8-4428-a583-4af13b61f24e",
+        "GeneratedBy": "urn:2a27b562-f2c8-4d65-87e7-8324ee4b0b9a",
         "digest": {
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       {
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+        "@id": "urn:b9dd4585-53b2-46d3-86ef-605a4028c435",
         "Label": "example_func2standard.mat",
         "AtLocation": "reg/example_func2standard.mat",
-        "GeneratedBy": "urn:3681abf1-32d8-4428-a583-4af13b61f24e",
+        "GeneratedBy": "urn:2a27b562-f2c8-4d65-87e7-8324ee4b0b9a",
         "digest": {
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       {
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         "Label": "cope2",
         "AtLocation": "stats/cope2",
-        "GeneratedBy": "urn:7e255ee1-b542-4024-a4b3-323d68b5d8c3",
+        "GeneratedBy": "urn:cf18c935-d808-4855-94c8-ab1e8af5e711",
         "digest": {
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       {
-        "@id": "urn:5e66964f-ad8f-467e-b290-2956f00ef1a2",
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         "Label": "example_func2standard.mat",
         "AtLocation": "reg/example_func2standard.mat",
-        "GeneratedBy": "urn:7e255ee1-b542-4024-a4b3-323d68b5d8c3",
+        "GeneratedBy": "urn:cf18c935-d808-4855-94c8-ab1e8af5e711",
         "digest": {
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       {
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         "Label": "example_func2standard.mat",
         "AtLocation": "reg/example_func2standard.mat",
-        "GeneratedBy": "urn:4aa4cd22-277d-4275-a53e-46b3d6ae63b5",
+        "GeneratedBy": "urn:b25b166c-87b5-473b-a60f-ad6c25f3622e",
         "digest": {
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       {
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         "Label": "example_func2standard.mat",
         "AtLocation": "reg/example_func2standard.mat",
-        "GeneratedBy": "urn:64fe3794-20dd-46e0-90fc-56a8b309c17d",
+        "GeneratedBy": "urn:25ae9bf9-095e-447e-a614-2c4608c5a78a",
         "digest": {
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       {
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         "Label": "example_func2standard.mat",
         "AtLocation": "reg/example_func2standard.mat",
-        "GeneratedBy": "urn:b4a0c70b-b21e-4841-9aa4-9162e50e00f8",
+        "GeneratedBy": "urn:3a2c9ee8-541c-4bc9-8e5b-13a00b8688c7",
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       {
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         "Label": "rendered_thresh_zstat1",
         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:c1887097-aa8e-4ded-9839-159c05a8ff2c",
+        "GeneratedBy": "urn:329d09d5-6a12-4729-a722-c6dc26a2fbe5",
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       {
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         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
-        "GeneratedBy": "urn:3e5999d6-e31d-4abf-be04-504c748c06aa",
+        "GeneratedBy": "urn:d809c990-23f3-4601-80f6-06be25447e95",
         "digest": {
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       {
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         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.8/etc/luts/ramp.gif",
         "digest": {
@@ -2670,100 +2670,100 @@
         }
       },
       {
-        "@id": "urn:d64fafc8-6fa8-4d3b-bc70-9db4ea5d3d36",
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         "Label": ".ramp.gif",
         "AtLocation": ".ramp.gif",
-        "GeneratedBy": "urn:62724743-d128-48d9-b0a9-b8bb0f6800ac",
+        "GeneratedBy": "urn:905e675b-0242-43eb-9763-4908abbe7de9",
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       {
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         "Label": "rendered_thresh_zstat2",
         "AtLocation": "rendered_thresh_zstat2",
-        "GeneratedBy": "urn:0ed6b3ac-dce1-4927-93ac-a8a05131d6c8",
+        "GeneratedBy": "urn:868803d2-f2c9-45ad-98ae-215da048aed3",
         "digest": {
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       {
-        "@id": "urn:e76c13e2-2635-44ea-9631-0f1dd0ed99d8",
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         "Label": "rendered_thresh_zstat2.png",
         "AtLocation": "rendered_thresh_zstat2.png",
-        "GeneratedBy": "urn:1bd62035-1ac7-4b81-927d-358b4ce0cb7d",
+        "GeneratedBy": "urn:b9336d7f-7863-4a9c-bda6-7cfde4a6b9e8",
         "digest": {
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       {
-        "@id": "urn:28c080bc-7f9b-47fe-910f-db1304870e68",
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         "Label": "rendered_thresh_zfstat1",
         "AtLocation": "rendered_thresh_zfstat1",
-        "GeneratedBy": "urn:be1edb32-3e58-45fa-a6af-df2d560cc972",
+        "GeneratedBy": "urn:2bcdf477-8b44-4542-9267-198f2aae6231",
         "digest": {
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       {
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         "Label": "rendered_thresh_zfstat1.png",
         "AtLocation": "rendered_thresh_zfstat1.png",
-        "GeneratedBy": "urn:7f0c37a4-8362-411a-9cab-3f45e445a60d",
+        "GeneratedBy": "urn:3ba5cd1f-fdfc-400a-a1ae-227bdfe70c50",
         "digest": {
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       {
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         "Label": "rendered_thresh_zfstat2",
         "AtLocation": "rendered_thresh_zfstat2",
-        "GeneratedBy": "urn:bbb6d66a-dbf7-476c-960f-a8b504905c26",
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         "AtLocation": "rendered_thresh_zfstat2.png",
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+        "@id": "urn:4d5696da-b769-4e33-9d69-07fac85ea539",
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         "AtLocation": "rendered_thresh_zfstat3",
-        "GeneratedBy": "urn:4752a95b-fa74-4f9d-90b6-54cd74bf4c5e",
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+        "@id": "urn:d4191393-3201-4f9e-aa33-65310f13e2d2",
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         "AtLocation": "rendered_thresh_zfstat3.png",
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         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:fcf49bf1-869c-4a95-82c6-beca8a4ad40b",
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diff --git a/examples/from_parsers/fsl/fsl_con_f_report_log.jsonld b/examples/from_parsers/fsl/fsl_con_f_report_log.jsonld
index 8b8146f5d..3c1b9421b 100644
--- a/examples/from_parsers/fsl/fsl_con_f_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_con_f_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "@id": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,607 +13,607 @@
     ],
     "Activities": [
       {
-        "@id": "urn:4206f70c-3207-4464-a93b-1094b5e556ce",
+        "@id": "urn:9b654366-a76d-4764-b5c9-25583871e422",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:592fd391-a562-4f9b-b0be-432c3de0f0a1"
+          "urn:2a166a8b-0df5-48e7-885f-3dd1049a4a6e"
         ]
       },
       {
-        "@id": "urn:9ad800da-5bfa-4f12-b2e5-3028be4f20cf",
+        "@id": "urn:d9519d20-c5f6-431a-a1dd-e10a3259b3eb",
         "Label": "fslroi",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:4d67debf-04bf-4d39-80b4-3bfaafb9bf08"
+          "urn:8f8fe587-dd5a-43d2-9792-8b372f66297e"
         ]
       },
       {
-        "@id": "urn:64796cac-f8f3-46ff-a608-ec8f2f452bff",
+        "@id": "urn:29ae19fc-3f10-4560-b622-06a4f38fc36e",
         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_f_test.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_f_test.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_f_test.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_f_test.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_f_test.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:57519ad5-a5ee-4b54-95a1-995405cbc897",
-          "urn:9e9057eb-e197-4c3e-b411-5cc092df19e5",
-          "urn:22a28170-7c0e-4430-b02f-0800d1ecf2a4"
+          "urn:12ce83c3-7028-4d69-afb7-ac47d8663d65",
+          "urn:d480eab3-ced7-414d-b125-70f96a958b33",
+          "urn:e744d76b-c5b8-44ba-a46a-d60b966b2cf2"
         ]
       },
       {
-        "@id": "urn:fedcd683-f414-4126-b5e2-45ac6fbeb7a6",
+        "@id": "urn:69730e52-a1bd-4eab-90f1-d16b1134d0e5",
         "Label": "Make directory",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_f_test.feat/reg",
         "Used": []
       },
       {
-        "@id": "urn:0807935a-9ab8-477e-8608-b44b647607cf",
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain highres",
         "Used": [
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+          "urn:d480eab3-ced7-414d-b125-70f96a958b33"
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       {
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         "Label": "fslmaths",
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         "Used": [
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+          "urn:68d1f283-8c1c-4996-96d0-8bd367625bef"
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         "Label": "epi_reg",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
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         "Used": []
       },
       {
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+        "@id": "urn:8adaf97f-5454-4af6-b15e-0af7e42fb528",
         "Label": "convert_xfm",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
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         "Used": [
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+          "urn:07a8d6a6-64b2-42fe-80b4-2b1eac1eb9e7"
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-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer example_func2highres highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
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         "Label": "pngappend",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
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         "Used": [
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+          "urn:6e408f66-20ca-482a-8005-ad8f3afa2a44",
+          "urn:876e299e-293c-40ca-9120-31b5a862d278",
+          "urn:8e0a645d-cbe1-4326-91da-cb1ea26a5356",
+          "urn:925cff4d-fdf7-4657-9ec2-ce8b1557aaef",
+          "urn:cb7470f0-d59a-452e-ae07-d28403e45649",
+          "urn:e29308d3-e89c-4238-a244-1637a64a3c27",
+          "urn:e784343f-88eb-4b8d-8447-9af21cf0b76a"
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         "Label": "slicer",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
-          "urn:6a7c684d-98df-4535-be47-fcf9e2eda67d",
-          "urn:f75b7820-b35b-43ac-9529-7847898e65b0"
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-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
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         "Used": [
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-          "urn:2f9bb8f0-6d78-4390-a502-3fcf6741b82c"
+          "urn:02264add-1973-4141-8387-b33615c07ee2",
+          "urn:41cbc35e-a5d8-4bb7-bc11-335f23d0d585",
+          "urn:4dd470c8-0988-4c71-a5f7-fece23acbed2",
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+          "urn:876e299e-293c-40ca-9120-31b5a862d278",
+          "urn:8e0a645d-cbe1-4326-91da-cb1ea26a5356",
+          "urn:925cff4d-fdf7-4657-9ec2-ce8b1557aaef",
+          "urn:cb7470f0-d59a-452e-ae07-d28403e45649",
+          "urn:e29308d3-e89c-4238-a244-1637a64a3c27",
+          "urn:e784343f-88eb-4b8d-8447-9af21cf0b76a"
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       {
-        "@id": "urn:5d581780-9fea-4d4d-a765-d8d540dff86b",
+        "@id": "urn:faa033ad-6397-4a90-9967-81e2735c7665",
         "Label": "pngappend",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend example_func2highres1.png example_func2highres2.png example_func2highres.png",
         "Used": [
-          "urn:69a2cfcd-bd40-4b1d-964e-f54c1ac6c91e",
-          "urn:d47393c3-4814-410b-b575-15617e79b6d6"
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+          "urn:9ee7d045-60cc-4630-9ecb-3a0d2d2c9ce5"
         ]
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       {
-        "@id": "urn:47a56e67-cb71-472f-8efa-c048220d3fab",
+        "@id": "urn:e9bf6240-19c0-42ac-a1b0-1ce5e68c2a2d",
         "Label": "rm",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
         "Used": [
-          "urn:13031df9-3189-40e2-9cc2-4a682da74984",
-          "urn:d47393c3-4814-410b-b575-15617e79b6d6"
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       {
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+        "@id": "urn:261dc1bd-062a-45f8-aaf6-940102b64247",
         "Label": "rm",
-        "AssociatedWith": "urn:04224d4a-d26a-49d4-9d53-64cc99273d94",
+        "AssociatedWith": "urn:52f6d3c6-539c-4296-999e-6c4388081a81",
         "Command": "/bin/rm example_func2highres1.png",
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@@ -621,25 +621,25 @@
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@@ -647,7 +647,7 @@
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@@ -655,7 +655,7 @@
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@@ -663,31 +663,31 @@
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@@ -695,13 +695,13 @@
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@@ -709,16 +709,16 @@
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@@ -726,250 +726,250 @@
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@@ -977,25 +977,25 @@
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@@ -1003,7 +1003,7 @@
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@@ -1011,7 +1011,7 @@
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@@ -1019,7 +1019,7 @@
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         "digest": {
@@ -1027,7 +1027,7 @@
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@@ -1035,7 +1035,7 @@
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         "AtLocation": "prefiltered_func_data_mcf_rel_mean.rms",
         "digest": {
@@ -1043,34 +1043,34 @@
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@@ -1078,34 +1078,34 @@
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@@ -1113,106 +1113,106 @@
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+        "GeneratedBy": "urn:68e68da7-bcca-452f-b6f2-f83c35290e9e",
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         "AtLocation": "prefiltered_func_data_tempfilt",
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@@ -1220,25 +1220,25 @@
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         "Label": "prefiltered_func_data*",
         "AtLocation": "prefiltered_func_data*",
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@@ -1246,16 +1246,16 @@
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
         "digest": {
@@ -1263,22 +1263,22 @@
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+        "@id": "urn:a571a087-7a6a-4a92-bc68-41edb558da5c",
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+        "GeneratedBy": "urn:b58a4b95-7e2c-42ca-8cf1-12c9a3e329fa",
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1286,13 +1286,13 @@
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         "AtLocation": "custom_timing_files/ev2.txt",
-        "GeneratedBy": "urn:1c50905a-4352-408b-bc1e-3d511116b8ed"
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@@ -1300,16 +1300,16 @@
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-        "GeneratedBy": "urn:362c1805-a188-444b-a452-3cceae801bbe",
+        "GeneratedBy": "urn:72ca6d99-b763-4a26-a7b5-27932336af26",
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         "Label": "zstat1",
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@@ -1317,16 +1317,16 @@
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@@ -1334,16 +1334,16 @@
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@@ -1351,25 +1351,25 @@
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@@ -1377,16 +1377,16 @@
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         "AtLocation": "cluster_mask_zfstat1",
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@@ -1394,25 +1394,25 @@
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         "AtLocation": "rendered_thresh_zstat1",
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         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
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+        "GeneratedBy": "urn:5621d6ab-3b3c-4ce5-beee-f3b2ab86dd39",
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         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1420,46 +1420,46 @@
         }
       },
       {
-        "@id": "urn:adc6bb28-7a0f-4e1a-aa5f-8d5e426b25f2",
+        "@id": "urn:df2b2d64-5c23-4874-ac1f-c16898f176c1",
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         "AtLocation": ".ramp.gif",
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         "AtLocation": "rendered_thresh_zfstat1",
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         "AtLocation": "rendered_thresh_zfstat1.png",
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         "Label": "tsplot",
         "AtLocation": "tsplot",
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diff --git a/examples/from_parsers/fsl/fsl_contrast_mask_report_log.jsonld b/examples/from_parsers/fsl/fsl_contrast_mask_report_log.jsonld
index 2093349c6..085adf954 100644
--- a/examples/from_parsers/fsl/fsl_contrast_mask_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_contrast_mask_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+        "@id": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,688 +13,688 @@
     ],
     "Activities": [
       {
-        "@id": "urn:8fca2197-e562-4255-8856-e9bdc397846c",
+        "@id": "urn:2535402f-72cd-4bfd-89de-7e06823f466c",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+        "AssociatedWith": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:dad9260f-dd02-4043-8c0f-2b6e7226c2eb"
+          "urn:0e6510cb-25ea-4024-9d79-6f39922fecd0"
         ]
       },
       {
-        "@id": "urn:7f8e1890-72fb-4b74-a656-e1390ae6742c",
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         "Label": "fslroi",
-        "AssociatedWith": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+        "AssociatedWith": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:798cd8cd-c847-4542-a933-b6e74e79b7dc"
+          "urn:19ae0996-972d-4935-aa1d-00a3c81c8532"
         ]
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       {
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+        "@id": "urn:60e048f8-0a7c-4600-af2f-7c21f85881e9",
         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+        "AssociatedWith": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_contrast_mask.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_contrast_mask.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_contrast_mask.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_contrast_mask.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_contrast_mask.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:27dee2a5-d4fd-455a-a7ba-355c85466044",
-          "urn:fd8651b8-73db-4e11-9007-4c85639d8cde",
-          "urn:831d53e6-f079-4799-939c-e7d7bd8b4e1d"
+          "urn:00a6d7f7-81fc-40c9-af9e-6c7ef9808562",
+          "urn:016458f6-3493-4533-9f1d-52d9e340c93d",
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       },
       {
-        "@id": "urn:918eddc7-6f84-490a-ac14-1da947842f79",
+        "@id": "urn:cad34a35-b8a1-4d5a-ab7b-f8e6216ecc7b",
         "Label": "Make directory",
-        "AssociatedWith": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+        "AssociatedWith": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_contrast_mask.feat/reg",
         "Used": []
       },
       {
-        "@id": "urn:e0b7adb3-d38b-4fc0-873d-2d62ebec19ce",
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
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         "Used": [
-          "urn:fd8651b8-73db-4e11-9007-4c85639d8cde"
+          "urn:016458f6-3493-4533-9f1d-52d9e340c93d"
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+        "AssociatedWith": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
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         "Used": [
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+          "urn:f5913280-0bd6-4a37-8ccd-bebabdaff219"
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         "Used": []
       },
       {
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         "Used": [
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         "Label": "pngappend",
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+          "urn:b92c80cd-35e5-4ed5-936a-1ec1f0154003",
+          "urn:ba25215a-afad-45cb-8cb6-d4877a6c890e",
+          "urn:bfecc9ae-1ef2-40a5-941a-89224c16e5b8",
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+          "urn:e7293b42-c5a8-4a4c-a0d5-9a29f7f215c2",
+          "urn:ef3204e8-e1db-40ac-bf2b-fa7d12275329",
+          "urn:ff77f2b9-2a9c-4ab1-aa4a-2d6dbd63d7ad"
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+        "@id": "urn:0de59090-a792-4965-b076-2ca69af34713",
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-        "AssociatedWith": "urn:0c609add-ff61-49c2-a7e4-5466be1bb5e6",
+        "AssociatedWith": "urn:7cfe2168-dbba-4477-b70f-3defaf2c32de",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
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-          "urn:23d7ac15-7e72-4849-b3a1-851e58705883"
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         "Label": "pngappend",
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         "Used": [
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@@ -1058,25 +1058,25 @@
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@@ -1159,34 +1159,34 @@
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@@ -1194,106 +1194,106 @@
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         "AtLocation": "prefiltered_func_data_thresh",
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+        "GeneratedBy": "urn:fb111b45-6a50-416e-9ebc-47853b4ae1e8",
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         "Label": "mean_func",
         "AtLocation": "mean_func",
-        "GeneratedBy": "urn:77377ac8-e94f-47ab-a512-1160810d465d",
+        "GeneratedBy": "urn:e9d84da7-d15b-4a7a-8c90-240b2a88a4fb",
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+        "@id": "urn:42b186e8-d358-4693-9d8c-cf46840ea4e4",
         "Label": "prefiltered_func_data_smooth",
         "AtLocation": "prefiltered_func_data_smooth",
-        "GeneratedBy": "urn:333737b2-2884-489a-bd62-8411fc800020",
+        "GeneratedBy": "urn:35156813-da64-4e25-a9be-f174a0d4fe62",
         "digest": {
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-        "@id": "urn:e13f861b-3c6e-40be-b8cd-02eeee0e58ce",
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         "AtLocation": "prefiltered_func_data_smooth",
-        "GeneratedBy": "urn:8d51b390-740e-4699-ba32-88d4f25ea861",
+        "GeneratedBy": "urn:a5ad4a2f-8b9e-420f-a5de-b26f57462d20",
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         "Label": "prefiltered_func_data_intnorm",
         "AtLocation": "prefiltered_func_data_intnorm",
-        "GeneratedBy": "urn:4c7e0766-bcb2-4baa-b971-d4766f468d5c",
+        "GeneratedBy": "urn:a4f27e7d-029b-48ed-b095-09e6c129877d",
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         "AtLocation": "tempMean",
-        "GeneratedBy": "urn:4f874d05-1bde-425a-a1e1-afa8043b443b",
+        "GeneratedBy": "urn:7e77794f-c84b-4ec9-8330-ff8e325e3c25",
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         "Label": "15.0",
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-        "GeneratedBy": "urn:5cc18600-63ec-4312-882b-c70dbc2b79ff",
+        "GeneratedBy": "urn:62e3812e-a3e8-4836-8119-a98496a70101",
         "digest": {
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         "digest": {
@@ -1301,25 +1301,25 @@
         }
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       {
-        "@id": "urn:781e38c2-b867-478d-821b-b7e09975dc14",
+        "@id": "urn:ae14ed40-d28f-491f-ad7f-f9364a2daeca",
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         "AtLocation": "filtered_func_data",
-        "GeneratedBy": "urn:e2e50d8d-e0f5-4bfe-b596-ea2f70aa04b7",
+        "GeneratedBy": "urn:6a63c416-cfed-47a4-8f47-eea9d7eb01dd",
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         "Label": "mean_func",
         "AtLocation": "mean_func",
-        "GeneratedBy": "urn:72115625-c8dc-4767-896c-bc1beabd045c",
+        "GeneratedBy": "urn:dad480ac-f312-4758-89c9-2c6765d6393a",
         "digest": {
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         "Label": "prefiltered_func_data*",
         "AtLocation": "prefiltered_func_data*",
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@@ -1327,16 +1327,16 @@
         }
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       {
-        "@id": "urn:e5dfce3b-8f98-4387-80ab-31507296666f",
+        "@id": "urn:cb038b70-f5e5-4619-a661-3b6f816e4043",
         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:7138a4c9-2a77-46a0-8701-b86b50081572",
+        "GeneratedBy": "urn:f63bd3cb-5e25-43e7-9b62-0a6b714b9fd0",
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         "Label": "sub-01_tone_counting.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
         "digest": {
@@ -1344,22 +1344,22 @@
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       {
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         "Label": "ev1.txt",
         "AtLocation": "custom_timing_files/ev1.txt",
-        "GeneratedBy": "urn:bbca53c8-51f0-4ec5-b50a-b3285b733beb"
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         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:d46bb024-544e-42ee-992c-0379f823de74",
+        "GeneratedBy": "urn:2e82d6a1-9e2a-446b-b508-0e5df37dbdfb",
         "digest": {
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       {
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         "Label": "sub-01_tone_counting_probe.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1367,13 +1367,13 @@
         }
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       {
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+        "@id": "urn:9c331ad8-b671-4cd6-9d35-d2c9da897c4b",
         "Label": "ev2.txt",
         "AtLocation": "custom_timing_files/ev2.txt",
-        "GeneratedBy": "urn:ec4eff37-da73-479a-bf55-e1c024f86d2c"
+        "GeneratedBy": "urn:d13633e4-0e1f-4847-aa4b-872c2aaee8dc"
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-        "@id": "urn:3dee4533-d67a-4b50-8443-b712acd3d6c1",
+        "@id": "urn:3c3330f9-e4c8-4073-b802-98d8d99c58e4",
         "Label": "res4d",
         "AtLocation": "stats/res4d",
         "digest": {
@@ -1381,16 +1381,16 @@
         }
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       {
-        "@id": "urn:3bfbbb4a-873e-45e9-9207-d8b0c3667936",
+        "@id": "urn:fdc26ec5-1cc2-4ccd-b9a1-399b018d25cc",
         "Label": "smoothness",
         "AtLocation": "stats/smoothness",
-        "GeneratedBy": "urn:c695a4c4-212d-4e8b-8a48-8fdbfc3c45dc",
+        "GeneratedBy": "urn:fd74433b-972f-43cf-a1b4-dfc0eda30f74",
         "digest": {
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       {
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+        "@id": "urn:45516259-81b3-4845-9a96-dcc09711ebd1",
         "Label": "zstat1",
         "AtLocation": "stats/zstat1",
         "digest": {
@@ -1398,16 +1398,16 @@
         }
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       {
-        "@id": "urn:53f479e8-16ec-4352-8e04-1986948d6c4e",
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         "Label": "thresh_zstat1",
         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:66b78379-1541-42a4-ab85-eee1a6eeacf3",
+        "GeneratedBy": "urn:2fc29d78-7b54-4548-b14f-ab9bc8df945d",
         "digest": {
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+        "@id": "urn:d3dcadd3-c0fd-43b7-bcc1-dd468be525fd",
         "Label": "zstat2",
         "AtLocation": "stats/zstat2",
         "digest": {
@@ -1415,16 +1415,16 @@
         }
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       {
-        "@id": "urn:72eaa85b-1d14-43ec-b59b-ba9598401b53",
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         "Label": "thresh_zstat2",
         "AtLocation": "thresh_zstat2",
-        "GeneratedBy": "urn:411d4e76-61bb-4d10-bc7a-0969df9d6f04",
+        "GeneratedBy": "urn:a86c86a4-3f9b-4369-8af5-f4c00a630aa8",
         "digest": {
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         "Label": "cope1",
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@@ -1432,25 +1432,25 @@
         }
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       {
-        "@id": "urn:1b9fb723-ecb9-4035-9235-b15638d971fd",
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         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:e11beee5-6c6b-453c-8060-fcffbb708e37",
+        "GeneratedBy": "urn:53901983-6ef5-4277-8aab-db76acd0368b",
         "digest": {
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         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:e11beee5-6c6b-453c-8060-fcffbb708e37",
+        "GeneratedBy": "urn:53901983-6ef5-4277-8aab-db76acd0368b",
         "digest": {
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       {
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         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1458,7 +1458,7 @@
         }
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       {
-        "@id": "urn:3922f9bd-f91d-449e-a730-8942b061fc06",
+        "@id": "urn:87cc6247-bc0d-422b-8b7e-d96348b86c74",
         "Label": "cope2",
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         "digest": {
@@ -1466,25 +1466,25 @@
         }
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       {
-        "@id": "urn:fdf650bf-c3ed-431b-982a-c1758eadc379",
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         "Label": "cluster_mask_zstat2",
         "AtLocation": "cluster_mask_zstat2",
-        "GeneratedBy": "urn:78b95913-a8e5-461c-8c1c-93afbeaae3e2",
+        "GeneratedBy": "urn:f92ff9b2-56a1-4b1a-b115-f1c87cfd741f",
         "digest": {
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       {
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         "Label": "cope2",
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-        "GeneratedBy": "urn:78b95913-a8e5-461c-8c1c-93afbeaae3e2",
+        "GeneratedBy": "urn:f92ff9b2-56a1-4b1a-b115-f1c87cfd741f",
         "digest": {
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       {
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         "Label": "cluster_zstat2",
         "AtLocation": "cluster_zstat2",
         "digest": {
@@ -1492,87 +1492,87 @@
         }
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       {
-        "@id": "urn:24cd5583-0676-412c-8d30-869fc4bad772",
+        "@id": "urn:44ef785d-33ad-462c-8cbf-cde5037a61e5",
         "Label": "conmask",
         "AtLocation": "conmask",
-        "GeneratedBy": "urn:a28dbf2b-52e6-497a-9a17-f8131d65ccdb",
+        "GeneratedBy": "urn:750ac308-6b79-4101-84ee-eb728049f005",
         "digest": {
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       {
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         "Label": "thresh_zstat1",
         "AtLocation": "conmask/thresh_zstat1",
-        "GeneratedBy": "urn:94968e26-dc7a-4ba6-b74a-67cc59e8071e"
+        "GeneratedBy": "urn:dff39876-ad27-4e98-8d9a-30be0fc479ef"
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       {
-        "@id": "urn:69393fe9-a34d-43a3-8146-b78f971c8599",
+        "@id": "urn:6aaf2f10-d644-48e2-83c2-dfde7dc9ee02",
         "Label": ".",
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-        "GeneratedBy": "urn:15ae5391-ad32-460c-98e3-00dba93100d8"
+        "GeneratedBy": "urn:07f41d41-3ca8-4a79-942b-64ea67ee5549"
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       {
-        "@id": "urn:e30b077c-1b55-440f-8bea-abd13856532c",
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         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:ef507610-583e-4af5-aaee-520301a7bdb0",
+        "GeneratedBy": "urn:ab1d786e-77c3-4a9b-8038-0202a1531374",
         "digest": {
           "sha256": "b28c170e33d2917cac55183786616a9e976e5e7f30dc7c8666341f12ed6d0277"
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       {
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         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:ef507610-583e-4af5-aaee-520301a7bdb0",
+        "GeneratedBy": "urn:ab1d786e-77c3-4a9b-8038-0202a1531374",
         "digest": {
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       {
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         "Label": "cluster_mask_zstat2",
         "AtLocation": "cluster_mask_zstat2",
-        "GeneratedBy": "urn:910bccb7-dcd9-4410-83d0-7c955cc2e8db",
+        "GeneratedBy": "urn:7b9573eb-6f4b-428c-a624-a39ae72d7ba3",
         "digest": {
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       {
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         "Label": "cope2",
         "AtLocation": "stats/cope2",
-        "GeneratedBy": "urn:910bccb7-dcd9-4410-83d0-7c955cc2e8db",
+        "GeneratedBy": "urn:7b9573eb-6f4b-428c-a624-a39ae72d7ba3",
         "digest": {
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       {
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         "Label": "rendered_thresh_zstat1",
         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:d401069b-da20-48be-afbb-31e098f3b3b2",
+        "GeneratedBy": "urn:9e7ed5bc-3c0b-48bc-8ce5-59a7516f3758",
         "digest": {
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       {
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@@ -1580,46 +1580,46 @@
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diff --git a/examples/from_parsers/fsl/fsl_default_report_log.jsonld b/examples/from_parsers/fsl/fsl_default_report_log.jsonld
index 9bcb9e99a..885aefe13 100644
--- a/examples/from_parsers/fsl/fsl_default_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_default_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:6c839333-833f-49bb-a38e-fde96e9ae7f0",
+        "@id": "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,540 +13,540 @@
     ],
     "Activities": [
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         "Used": [
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+          "urn:cc8f8d80-4f02-496d-9a4a-e0e2bfbe3189"
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         "Used": [
-          "urn:c3c5639a-2d61-43e6-811e-33cac6c4b0ed"
+          "urn:0924054c-0c39-4d36-b059-e742e85e493d"
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         "Used": [
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         "Label": "Make directory",
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         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_voxelwise_p0001.feat/reg",
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       {
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         "Used": [
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         "Used": [
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         "Used": []
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+        "AssociatedWith": "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
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         "Label": "pngappend",
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+        "AssociatedWith": "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend example_func2highres1.png example_func2highres2.png example_func2highres.png",
         "Used": [
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-          "urn:9561a3cd-6f1f-4f1a-a4cb-55eedb09094a"
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         "Label": "rm",
-        "AssociatedWith": "urn:6c839333-833f-49bb-a38e-fde96e9ae7f0",
+        "AssociatedWith": "urn:9c97f789-68aa-4cdc-aa0b-04d6151c43cb",
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@@ -910,25 +910,25 @@
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@@ -936,7 +936,7 @@
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@@ -944,7 +944,7 @@
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@@ -952,7 +952,7 @@
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@@ -960,7 +960,7 @@
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@@ -968,7 +968,7 @@
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@@ -976,34 +976,34 @@
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@@ -1011,34 +1011,34 @@
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@@ -1046,106 +1046,106 @@
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@@ -1153,25 +1153,25 @@
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@@ -1179,16 +1179,16 @@
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@@ -1196,22 +1196,22 @@
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@@ -1219,13 +1219,13 @@
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@@ -1233,16 +1233,16 @@
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@@ -1250,16 +1250,16 @@
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@@ -1267,25 +1267,25 @@
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@@ -1293,25 +1293,25 @@
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@@ -1319,28 +1319,28 @@
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         "Label": "tsplot",
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-        "GeneratedBy": "urn:b5e9050f-4d3b-47f4-901a-7063ed55253f",
+        "GeneratedBy": "urn:241de80c-b8e2-43b3-be20-f4200ac54a29",
         "digest": {
           "sha256": "2a74042f4edf02288edf16961307f741651efb4346e102a04b7603e781d1625e"
         }
       },
       {
-        "@id": "urn:52b454bd-7e81-4ee7-ac1e-efe736cdd46c",
+        "@id": "urn:9b09580c-b95c-4672-ac21-1789f9976135",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:54d4205c-2755-4b93-8703-c1d55bea28be",
+        "GeneratedBy": "urn:9bbddc14-8c3b-4b30-87dd-6d3f0423692f",
         "digest": {
           "sha256": "2a74042f4edf02288edf16961307f741651efb4346e102a04b7603e781d1625e"
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diff --git a/examples/from_parsers/fsl/fsl_full_examples001_report_log.jsonld b/examples/from_parsers/fsl/fsl_full_examples001_report_log.jsonld
index 636d9abcb..25507bb5c 100644
--- a/examples/from_parsers/fsl/fsl_full_examples001_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_full_examples001_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "@id": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,749 +13,749 @@
     ],
     "Activities": [
       {
-        "@id": "urn:5621d6ab-3b3c-4ce5-beee-f3b2ab86dd39",
+        "@id": "urn:36a64250-989a-45ef-8809-cd162468e5f2",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths /Users/cmaumet/Data/fsl_practicals/fsl_course_data/fmri/fmri_fluency/fmri prefiltered_func_data -odt float",
         "Used": [
-          "urn:281423b8-3ad1-451a-a49a-1a6c7585f1ff"
+          "urn:76e24d10-75b5-4d38-a1ea-1dfea30ed114"
         ]
       },
       {
-        "@id": "urn:6fd69f94-a903-4b36-8c44-b3836dc86b5e",
+        "@id": "urn:0c1f173a-a1e8-43ad-942f-d3231383ed70",
         "Label": "fslroi",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslroi prefiltered_func_data example_func 53 1",
         "Used": [
-          "urn:72dce464-30aa-4ee0-a144-88999ef0598b"
+          "urn:447b3e40-4c33-4a46-8121-5c9a3af866aa"
         ]
       },
       {
-        "@id": "urn:9709374e-08e8-47ef-a9cb-97210fd1eace",
+        "@id": "urn:957b2a43-07df-4b2e-942d-783862b74031",
         "Label": "mcflirt",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs",
         "Used": [
-          "urn:72dce464-30aa-4ee0-a144-88999ef0598b"
+          "urn:447b3e40-4c33-4a46-8121-5c9a3af866aa"
         ]
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       {
-        "@id": "urn:cd14c950-8108-49e7-b97b-d4251ccbb529",
+        "@id": "urn:f55c118c-56ab-4383-a123-3704c2418a98",
         "Label": "Make directory",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/bin/mkdir -p mc",
         "Used": []
       },
       {
-        "@id": "urn:90bf0411-4781-4d6a-8402-b213e171d6a0",
+        "@id": "urn:1e0b939a-7f03-4ce5-94d3-ec2db95d67b5",
         "Label": "mv",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc",
         "Used": [
-          "urn:768b07e6-4c61-4e15-be15-27eb66dc108a",
-          "urn:0b19922d-9343-4d11-af8f-23b968d3fe61",
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-          "urn:325a2bfd-6837-4b92-822d-3b697d0883a6",
-          "urn:c4b41eb0-6e4c-466e-907d-9ae326422bdb",
-          "urn:0139ed04-010d-414f-8907-5d6163b567ea"
+          "urn:2bfd1d18-9f2e-4320-aaef-09ce4964eab6",
+          "urn:7d15df61-0c90-47a2-b901-a49fb72542ad",
+          "urn:886a634a-92ae-4b6a-a202-50de6c793825",
+          "urn:940bcdf8-e7cf-4cb8-8c23-a54d80cac020",
+          "urn:958a9af3-d67a-49c5-be0f-f910d982040b",
+          "urn:e987b7b3-5351-425a-80bd-1c18f436aa05"
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       {
-        "@id": "urn:793001e3-092c-46bb-b006-638851f60f1e",
+        "@id": "urn:65b22365-2211-4d46-bfc4-975be5c60659",
         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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         "Used": [
-          "urn:0b19922d-9343-4d11-af8f-23b968d3fe61"
+          "urn:e987b7b3-5351-425a-80bd-1c18f436aa05"
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         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png",
         "Used": [
-          "urn:0b19922d-9343-4d11-af8f-23b968d3fe61"
+          "urn:e987b7b3-5351-425a-80bd-1c18f436aa05"
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         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png",
         "Used": [
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+          "urn:97719e5d-4229-4ff2-8310-05340e8ce878"
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       {
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+        "@id": "urn:9b687564-6599-4fc2-a127-ba19d5e56934",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -Tmean mean_func",
         "Used": [
-          "urn:bf8771f2-a6ca-4308-a241-70cae05127e9"
+          "urn:7772020d-ac05-4d0e-aa6b-ba7c6516fb74"
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       {
-        "@id": "urn:9ab1f065-b1b1-4d54-a405-59ef938a5da1",
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         "Label": "bet2",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/bet2 mean_func mask -f 0.3 -n -m",
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+          "urn:c82e7fa3-80eb-4169-978d-93ec72026c55"
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         "Label": "immv",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/immv mask_mask mask",
         "Used": [
-          "urn:00eac208-4c30-4d3c-9282-5d94b806e027"
+          "urn:c774d4f0-4ad3-44d8-b9c5-7775c0dc9776"
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+        "@id": "urn:ad20686e-7a8c-4964-a10e-799a1c8761c9",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_bet",
         "Used": [
-          "urn:b1cfd1b0-2ccc-4359-b62c-14e43afb5b18",
-          "urn:bf8771f2-a6ca-4308-a241-70cae05127e9"
+          "urn:3beb9088-e8a6-44f2-b869-189fa7e32181",
+          "urn:7772020d-ac05-4d0e-aa6b-ba7c6516fb74"
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       {
-        "@id": "urn:3c8f1e80-b4dc-4d12-b22c-ac616848f9ae",
+        "@id": "urn:7b98fe35-6185-46c1-b6ab-218cd580fb53",
         "Label": "fslstats",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslstats prefiltered_func_data_bet -p 2 -p 98",
         "Used": [
-          "urn:6442d6c7-861e-47b6-a7ec-869397d3fd3c"
+          "urn:ca644e16-bc8f-4cb8-a310-fb2005b8f3d8"
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+        "@id": "urn:cc89346d-5c53-4652-84d4-847a29ab7c7c",
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-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths prefiltered_func_data_bet -thr 978.24375 -Tmin -bin mask -odt char",
         "Used": [
-          "urn:6442d6c7-861e-47b6-a7ec-869397d3fd3c"
+          "urn:ca644e16-bc8f-4cb8-a310-fb2005b8f3d8"
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       {
-        "@id": "urn:f8ad3805-7098-4b47-bba8-e210230c5e80",
+        "@id": "urn:2c4629c9-90fd-4777-a252-2d2d739ff1ee",
         "Label": "fslstats",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslstats prefiltered_func_data_mcf -k mask -p 50",
         "Used": [
-          "urn:bf8771f2-a6ca-4308-a241-70cae05127e9"
+          "urn:7772020d-ac05-4d0e-aa6b-ba7c6516fb74"
         ]
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-        "@id": "urn:7cbb179d-b703-4f73-8e1f-296962f7bdf8",
+        "@id": "urn:5b90ef67-d464-423c-9769-46fed7afde85",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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         "Used": [
-          "urn:b1cfd1b0-2ccc-4359-b62c-14e43afb5b18"
+          "urn:3beb9088-e8a6-44f2-b869-189fa7e32181"
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-        "@id": "urn:1f493787-989c-4c06-97df-d5dde83c5dcf",
+        "@id": "urn:b850c3bb-c708-4927-a081-f0f6462076a0",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_thresh",
         "Used": [
-          "urn:b1cfd1b0-2ccc-4359-b62c-14e43afb5b18",
-          "urn:bf8771f2-a6ca-4308-a241-70cae05127e9"
+          "urn:3beb9088-e8a6-44f2-b869-189fa7e32181",
+          "urn:7772020d-ac05-4d0e-aa6b-ba7c6516fb74"
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+        "@id": "urn:0ea248cd-0b5c-47e6-86ab-b81edcdad19f",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths prefiltered_func_data_thresh -Tmean mean_func",
         "Used": [
-          "urn:90a887ab-a8a3-45b6-87c3-d33000ccc882"
+          "urn:73706964-2ab5-4dbc-8f4a-edc7d81fe7eb"
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-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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         "Used": [
-          "urn:90a887ab-a8a3-45b6-87c3-d33000ccc882"
+          "urn:73706964-2ab5-4dbc-8f4a-edc7d81fe7eb"
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/fslmaths prefiltered_func_data_smooth -mas mask prefiltered_func_data_smooth",
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-          "urn:b1cfd1b0-2ccc-4359-b62c-14e43afb5b18",
-          "urn:e77609bf-fd45-4ea1-ad95-08171ed97abb"
+          "urn:32f9bfaf-ad74-42f3-9703-e946cb2ec370",
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+        "@id": "urn:8ae31d5e-a3ad-42bd-ad51-5124acc6a71f",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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         "Used": [
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+          "urn:32f9bfaf-ad74-42f3-9703-e946cb2ec370"
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+        "@id": "urn:ee2408cc-c449-4e10-93d3-7c11e0a58e0f",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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+          "urn:431edd12-cde6-4811-9006-d6fed017d3c5"
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+        "@id": "urn:e70dd1e8-a92b-4729-967d-c0dbcba46a21",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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         "Used": [
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+          "urn:c7594a11-495b-4a28-a309-548106b04b0e"
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+        "@id": "urn:9c0ba698-c0c5-4305-977c-d9e1c1862185",
         "Label": "fslmaths",
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+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
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         "Used": [
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+          "urn:a3e61de6-6e73-40e4-a5ba-7044349cfb1a"
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         "Command": "/bin/rm -rf prefiltered_func_data*",
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-          "urn:f1adcdf3-1142-44e9-91b5-d5e17469c02e"
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-          "urn:848d10fa-989f-4a16-9db9-e9f346013291"
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         "Label": "echo",
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         "Label": "cluster",
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-          "urn:1ea5f0a6-5c3a-4f1c-a8b2-2471344253bc"
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         "Label": "cluster2html",
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+          "urn:453f2339-e213-4b5e-ab94-4573425a181a"
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         "Label": "overlay",
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+          "urn:753d9758-36e4-406a-b40f-4d8ec0e5d9dc"
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+          "urn:b6bd7923-5f95-4de9-b336-d38e1ef54915"
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         "Label": "Make directory",
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-          "urn:1ea5f0a6-5c3a-4f1c-a8b2-2471344253bc"
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         "Label": "cluster2html",
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         "Label": "fslmaths",
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         "Label": "fslmaths",
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+          "urn:454caa2e-6cdb-40f4-acf7-786cfbbda286"
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-          "urn:99bfb3b9-63a3-4d93-9388-84dd8aaba7b3"
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+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
-          "urn:99bfb3b9-63a3-4d93-9388-84dd8aaba7b3",
-          "urn:6fbdb553-8156-4158-aa41-c34fe4536a6f"
+          "urn:3e2d0b3c-a9d8-459a-a5b6-1c442573c6a9",
+          "urn:48d9754b-4a40-49db-a0de-65552667fd1b"
         ]
       },
       {
-        "@id": "urn:a1376e07-2ae9-42a9-8615-463d27aac63d",
+        "@id": "urn:9797bc52-7adb-412d-8bda-1583d063dfee",
         "Label": "pngappend",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png example_func2highres2.png",
         "Used": [
-          "urn:d38b98e8-3e70-4650-a496-8fc444b4e061",
-          "urn:957b0079-9662-4836-b6d5-563dd2d7b239",
-          "urn:30eff423-d391-4db7-a391-898d50dc8e92",
-          "urn:3a16d2a3-ae65-4e61-a93c-6b5cc6ba9d2e",
-          "urn:1c858060-3800-44dc-bcab-8a540f7d215c",
-          "urn:ab98154a-24fa-47a8-84ea-d6eac5c8387d",
-          "urn:44ed666d-a01c-4385-9f30-438c6db3b2d7",
-          "urn:21b70068-0e68-4cfa-afd4-f6103efb8b83",
-          "urn:a40b63b6-38da-40a5-96fa-d18592e31414",
-          "urn:15bea182-294d-4fe1-9350-ae103cb0dddb",
-          "urn:e8466eba-cc73-4e2d-a3e9-9df243ee1687",
-          "urn:7328a639-5800-430e-9d20-d0c7d77f0daa"
+          "urn:1e49c15c-14eb-4d2a-91f1-2b6617511ba6",
+          "urn:407a0dcc-199e-43d1-820c-6c4488d6b491",
+          "urn:4a906933-51a2-44bc-b703-d09459da47ac",
+          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
+          "urn:7c1874c9-f93c-4559-9f77-77113ffc2a9f",
+          "urn:7e0c56eb-958e-44b5-be14-a6d366612be8",
+          "urn:be62d30a-74c7-4d75-8b5e-a9279b6f18b9",
+          "urn:dcbb9a26-c93b-4b31-bcd1-59dacb0383d6",
+          "urn:e5a7f06e-badf-4d72-ad52-7cadde4b7157",
+          "urn:e98f18a4-0565-4a3c-82c0-2a43e2465c28",
+          "urn:ed233bfd-1b60-4d80-9dce-035f0c183896",
+          "urn:f1704fe7-f6ea-4663-9608-648f52503c52"
         ]
       },
       {
-        "@id": "urn:3990b2ab-c24a-4737-a70a-2d9e95fae845",
+        "@id": "urn:1bcf3fb2-1e79-4118-82a5-230693a38f9e",
         "Label": "pngappend",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/pngappend example_func2highres1.png example_func2highres2.png example_func2highres.png",
         "Used": [
-          "urn:496fc0fe-61c9-4f9f-9f38-fda4fc784cd0",
-          "urn:b69ed67d-30d0-4ac4-b43a-90f19d8aeb04"
+          "urn:937b139f-5ca7-42f5-8f3d-ac6cfbb528d9",
+          "urn:a5e01309-a083-4d4d-8aef-4a5e487731b8"
         ]
       },
       {
-        "@id": "urn:eb1300ed-f917-4b8d-be12-a9b6917ab7c7",
+        "@id": "urn:fa4621bc-c290-4d99-a4f0-507a34817870",
         "Label": "rm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
         "Used": [
-          "urn:2abffd1a-63a7-49a5-a031-c8a4bcbc73e0",
-          "urn:b69ed67d-30d0-4ac4-b43a-90f19d8aeb04"
+          "urn:42562745-8ff4-4e2d-8775-7ac339c7d569",
+          "urn:937b139f-5ca7-42f5-8f3d-ac6cfbb528d9"
         ]
       },
       {
-        "@id": "urn:7bc3df53-d61f-4ead-96d2-ec4e5c114672",
+        "@id": "urn:771ae86f-2170-4828-b748-e4319401099b",
         "Label": "rm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
-          "urn:496fc0fe-61c9-4f9f-9f38-fda4fc784cd0"
+          "urn:a5e01309-a083-4d4d-8aef-4a5e487731b8"
         ]
       },
       {
-        "@id": "urn:635786d0-a31c-4c2c-8cff-86fb4e69561f",
+        "@id": "urn:447495e3-84ca-460f-81ae-cda583bde9f9",
         "Label": "flirt",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/flirt -in highres -ref standard -out highres2standard -omat highres2standard.mat -cost corratio -dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear",
         "Used": [
-          "urn:99bfb3b9-63a3-4d93-9388-84dd8aaba7b3",
-          "urn:01dc9cfe-e1e5-4460-b7cc-8bffb7c50a91"
+          "urn:48d9754b-4a40-49db-a0de-65552667fd1b",
+          "urn:b6a5e321-c95b-4668-a67d-261166c3e79e"
         ]
       },
       {
-        "@id": "urn:49c149bd-506d-43dc-a748-105569e82a6a",
+        "@id": "urn:26c85652-df8e-4d98-8ff4-7a8429f8f216",
         "Label": "convert_xfm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/convert_xfm -inverse -omat standard2highres.mat highres2standard.mat",
         "Used": [
-          "urn:2cc59175-6303-4cd7-9c05-77a398e2fc83"
+          "urn:9bb3b3c7-d9e7-4990-b618-54e62cdb8449"
         ]
       },
       {
-        "@id": "urn:7db1d5a7-bf84-4146-830b-ce661f6fdee9",
+        "@id": "urn:660e76f5-e52e-4958-ab9a-ca2aa5d72ee0",
         "Label": "slicer",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/slicer highres2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
-          "urn:ba344696-9885-460b-bde8-5d4af529f98f",
-          "urn:01dc9cfe-e1e5-4460-b7cc-8bffb7c50a91"
+          "urn:92427393-98b5-4022-8061-336cc4b00dde",
+          "urn:b6a5e321-c95b-4668-a67d-261166c3e79e"
         ]
       },
       {
-        "@id": "urn:75586543-bccc-41f5-aaf9-bf36873ef23b",
+        "@id": "urn:7f3d1f14-a8c3-47f2-9af6-9b28a4bb791d",
         "Label": "pngappend",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png highres2standard1.png",
         "Used": [
-          "urn:d38b98e8-3e70-4650-a496-8fc444b4e061",
-          "urn:957b0079-9662-4836-b6d5-563dd2d7b239",
-          "urn:30eff423-d391-4db7-a391-898d50dc8e92",
-          "urn:3a16d2a3-ae65-4e61-a93c-6b5cc6ba9d2e",
-          "urn:1c858060-3800-44dc-bcab-8a540f7d215c",
-          "urn:ab98154a-24fa-47a8-84ea-d6eac5c8387d",
-          "urn:44ed666d-a01c-4385-9f30-438c6db3b2d7",
-          "urn:21b70068-0e68-4cfa-afd4-f6103efb8b83",
-          "urn:a40b63b6-38da-40a5-96fa-d18592e31414",
-          "urn:15bea182-294d-4fe1-9350-ae103cb0dddb",
-          "urn:e8466eba-cc73-4e2d-a3e9-9df243ee1687",
-          "urn:7328a639-5800-430e-9d20-d0c7d77f0daa"
+          "urn:1e49c15c-14eb-4d2a-91f1-2b6617511ba6",
+          "urn:407a0dcc-199e-43d1-820c-6c4488d6b491",
+          "urn:4a906933-51a2-44bc-b703-d09459da47ac",
+          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
+          "urn:7c1874c9-f93c-4559-9f77-77113ffc2a9f",
+          "urn:7e0c56eb-958e-44b5-be14-a6d366612be8",
+          "urn:be62d30a-74c7-4d75-8b5e-a9279b6f18b9",
+          "urn:dcbb9a26-c93b-4b31-bcd1-59dacb0383d6",
+          "urn:e5a7f06e-badf-4d72-ad52-7cadde4b7157",
+          "urn:e98f18a4-0565-4a3c-82c0-2a43e2465c28",
+          "urn:ed233bfd-1b60-4d80-9dce-035f0c183896",
+          "urn:f1704fe7-f6ea-4663-9608-648f52503c52"
         ]
       },
       {
-        "@id": "urn:f4e0ebd3-1e18-4a7a-84a5-f90f1a17271f",
+        "@id": "urn:1e702c29-b4e1-41fa-bc95-23dfe6921348",
         "Label": "slicer",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/slicer standard highres2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
-          "urn:01dc9cfe-e1e5-4460-b7cc-8bffb7c50a91",
-          "urn:ba344696-9885-460b-bde8-5d4af529f98f"
+          "urn:92427393-98b5-4022-8061-336cc4b00dde",
+          "urn:b6a5e321-c95b-4668-a67d-261166c3e79e"
         ]
       },
       {
-        "@id": "urn:e5e87b5f-4e21-4b1b-86b8-747ce7b162c0",
+        "@id": "urn:757e1873-4676-46d2-a92f-5b67fb687b7c",
         "Label": "pngappend",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png highres2standard2.png",
         "Used": [
-          "urn:d38b98e8-3e70-4650-a496-8fc444b4e061",
-          "urn:957b0079-9662-4836-b6d5-563dd2d7b239",
-          "urn:30eff423-d391-4db7-a391-898d50dc8e92",
-          "urn:3a16d2a3-ae65-4e61-a93c-6b5cc6ba9d2e",
-          "urn:1c858060-3800-44dc-bcab-8a540f7d215c",
-          "urn:ab98154a-24fa-47a8-84ea-d6eac5c8387d",
-          "urn:44ed666d-a01c-4385-9f30-438c6db3b2d7",
-          "urn:21b70068-0e68-4cfa-afd4-f6103efb8b83",
-          "urn:a40b63b6-38da-40a5-96fa-d18592e31414",
-          "urn:15bea182-294d-4fe1-9350-ae103cb0dddb",
-          "urn:e8466eba-cc73-4e2d-a3e9-9df243ee1687",
-          "urn:7328a639-5800-430e-9d20-d0c7d77f0daa"
+          "urn:1e49c15c-14eb-4d2a-91f1-2b6617511ba6",
+          "urn:407a0dcc-199e-43d1-820c-6c4488d6b491",
+          "urn:4a906933-51a2-44bc-b703-d09459da47ac",
+          "urn:5538393a-0e9e-4399-a092-fabfef6b5282",
+          "urn:7c1874c9-f93c-4559-9f77-77113ffc2a9f",
+          "urn:7e0c56eb-958e-44b5-be14-a6d366612be8",
+          "urn:be62d30a-74c7-4d75-8b5e-a9279b6f18b9",
+          "urn:dcbb9a26-c93b-4b31-bcd1-59dacb0383d6",
+          "urn:e5a7f06e-badf-4d72-ad52-7cadde4b7157",
+          "urn:e98f18a4-0565-4a3c-82c0-2a43e2465c28",
+          "urn:ed233bfd-1b60-4d80-9dce-035f0c183896",
+          "urn:f1704fe7-f6ea-4663-9608-648f52503c52"
         ]
       },
       {
-        "@id": "urn:7184b261-fe51-4185-9016-c53543847ab3",
+        "@id": "urn:18bcf888-7184-4614-8154-0e51dab9d2e7",
         "Label": "pngappend",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/pngappend highres2standard1.png highres2standard2.png highres2standard.png",
         "Used": [
-          "urn:a0b91069-29ca-4697-a098-3840eae8d9a3",
-          "urn:537f0fb7-be91-447d-b3dd-c7e95ce9c200"
+          "urn:13b5dfe8-b7ac-4e01-a102-0ed6a57ef661",
+          "urn:f0e04c2e-44e8-4aff-aab5-a7e1ee98098f"
         ]
       },
       {
-        "@id": "urn:584d7ffd-c371-479c-ad6a-671ac4abfb00",
+        "@id": "urn:13bfb68d-6090-4f83-a70e-3f46774397ec",
         "Label": "rm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/bin/rm -f sl?.png highres2standard2.png",
         "Used": [
-          "urn:2abffd1a-63a7-49a5-a031-c8a4bcbc73e0",
-          "urn:537f0fb7-be91-447d-b3dd-c7e95ce9c200"
+          "urn:42562745-8ff4-4e2d-8775-7ac339c7d569",
+          "urn:f0e04c2e-44e8-4aff-aab5-a7e1ee98098f"
         ]
       },
       {
-        "@id": "urn:5763e116-fe67-4fb0-972d-bf4760c3f5e5",
+        "@id": "urn:a12f67fa-445a-4453-bfea-0530ee29ab2d",
         "Label": "rm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/bin/rm highres2standard1.png",
         "Used": [
-          "urn:a0b91069-29ca-4697-a098-3840eae8d9a3"
+          "urn:13b5dfe8-b7ac-4e01-a102-0ed6a57ef661"
         ]
       },
       {
-        "@id": "urn:a3b4bb16-0de9-4bc9-ae04-578af93edca6",
+        "@id": "urn:83c18660-6b2b-43ef-9001-34ec53eb6663",
         "Label": "convert_xfm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/convert_xfm -omat example_func2standard.mat -concat highres2standard.mat example_func2highres.mat",
         "Used": [
-          "urn:4e52c079-40a2-41a8-95a5-03cc45bf1bad"
+          "urn:0fe9750e-e253-4ce3-9501-6f9b5be5612c"
         ]
       },
       {
-        "@id": "urn:ffedd072-2d42-4cf8-8bf2-84da700e838d",
+        "@id": "urn:2070ae2f-3560-47c0-ac79-34a688f24a9a",
         "Label": "flirt",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/flirt -ref standard -in example_func -out example_func2standard -applyxfm -init example_func2standard.mat -interp trilinear",
         "Used": [
-          "urn:df2b2d64-5c23-4874-ac1f-c16898f176c1",
-          "urn:01dc9cfe-e1e5-4460-b7cc-8bffb7c50a91",
-          "urn:8456218e-78ef-4c11-8d99-f270f00b2481"
+          "urn:b6a5e321-c95b-4668-a67d-261166c3e79e",
+          "urn:c00eeda2-be42-487f-b6e2-28515f578f3e",
+          "urn:c7199008-6f75-4762-a1e8-cf1323e12c40"
         ]
       },
       {
-        "@id": "urn:24e41c86-95da-4c99-b4b3-6b48de8f3d39",
+        "@id": "urn:1c51ee27-d1e8-4e43-a40f-6ccd1b31dc4d",
         "Label": "convert_xfm",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/convert_xfm -inverse -omat standard2example_func.mat example_func2standard.mat",
         "Used": [
-          "urn:8456218e-78ef-4c11-8d99-f270f00b2481"
+          "urn:c7199008-6f75-4762-a1e8-cf1323e12c40"
         ]
       },
       {
-        "@id": "urn:f2c5b2f0-2b16-4aed-b7b1-c4c79b48829c",
+        "@id": "urn:78ed0f4d-6f99-449e-a8c8-4eefb0449abd",
         "Label": "slicer",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/slicer example_func2standard standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
-          "urn:7a64a1ff-5591-417c-9726-2f0976688302",
-          "urn:01dc9cfe-e1e5-4460-b7cc-8bffb7c50a91"
+          "urn:b6a5e321-c95b-4668-a67d-261166c3e79e",
+          "urn:cd9873c3-d9ba-4e4e-a33a-017011561abf"
         ]
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       {
-        "@id": "urn:5bda6fc2-3033-4108-9a3e-87e0c93691e9",
+        "@id": "urn:0d2d17a2-b566-4927-927c-9f4a9d8d2883",
         "Label": "pngappend",
-        "AssociatedWith": "urn:15bedf62-df23-49b6-bbc8-1aa1713a09ea",
+        "AssociatedWith": "urn:ed650386-5a53-4329-b53b-a0fd3776085b",
         "Command": "/usr/local/fsl/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png example_func2standard1.png",
         "Used": [
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-          "urn:957b0079-9662-4836-b6d5-563dd2d7b239",
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+          "urn:7e0c56eb-958e-44b5-be14-a6d366612be8",
+          "urn:be62d30a-74c7-4d75-8b5e-a9279b6f18b9",
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+          "urn:e5a7f06e-badf-4d72-ad52-7cadde4b7157",
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+          "urn:ed233bfd-1b60-4d80-9dce-035f0c183896",
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-          "urn:7a64a1ff-5591-417c-9726-2f0976688302"
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         "Command": "/usr/local/fsl/bin/pngappend example_func2standard1.png example_func2standard2.png example_func2standard.png",
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         "Command": "/bin/rm -f sl?.png example_func2standard2.png",
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         "Label": "fmri",
         "AtLocation": "/Users/cmaumet/Data/fsl_practicals/fsl_course_data/fmri/fmri_fluency/fmri",
         "digest": {
@@ -763,43 +763,43 @@
         }
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         "AtLocation": "prefiltered_func_data",
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         "Label": "example_func",
         "AtLocation": "example_func",
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         "AtLocation": "prefiltered_func_data_mcf",
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@@ -807,7 +807,7 @@
         }
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         "AtLocation": "prefiltered_func_data_mcf.par",
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@@ -815,7 +815,7 @@
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       {
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@@ -823,7 +823,7 @@
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         "AtLocation": "prefiltered_func_data_mcf_abs_mean.rms",
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@@ -831,7 +831,7 @@
         }
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@@ -839,7 +839,7 @@
         }
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         "AtLocation": "prefiltered_func_data_mcf_rel_mean.rms",
         "digest": {
@@ -847,34 +847,34 @@
         }
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-        "@id": "urn:6310131e-c904-4128-a310-bcd85a930896",
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@@ -882,34 +882,34 @@
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@@ -917,97 +917,97 @@
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         "AtLocation": "prefiltered_func_data_bet",
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@@ -1260,286 +1260,286 @@
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@@ -1547,541 +1547,541 @@
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diff --git a/examples/from_parsers/fsl/fsl_gamma_basis_report_log.jsonld b/examples/from_parsers/fsl/fsl_gamma_basis_report_log.jsonld
index 48306e0bb..1780d007a 100644
--- a/examples/from_parsers/fsl/fsl_gamma_basis_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_gamma_basis_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
+        "@id": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,1014 +13,1014 @@
     ],
     "Activities": [
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-        "@id": "urn:af85f6f2-37a6-47f6-b706-5bb7237597f3",
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+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:d962259d-c7e2-4732-9f0b-c56983f6dc36"
+          "urn:6c939c93-038f-484b-8362-0d7ccb01dfa4"
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       },
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         "Label": "fslroi",
-        "AssociatedWith": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:a604e485-33c0-49ce-8657-1649b10f2247"
+          "urn:a6a7d9c7-b476-48d8-b50d-0884eb184eb3"
         ]
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+        "@id": "urn:ac9f2384-a0e0-4065-aa27-51ffe9369655",
         "Label": "mainfeatreg",
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         "Used": [
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-          "urn:16efefb5-f541-4233-82d6-1e9fe0e35bce"
+          "urn:44e2aed7-c604-4e4d-8be6-5ac2defa313e",
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+        "@id": "urn:d9f85d96-c33c-411a-8cfa-c8de426d250a",
         "Label": "Make directory",
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         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_gamma_basis.feat/reg",
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       },
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         "Used": [
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         "Used": [
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         "Used": []
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       {
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         "Used": [
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         "Used": [
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-          "urn:5256b601-32fe-4e3a-89da-4c22e8865939"
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         "Label": "pngappend",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png example_func2highres1.png",
         "Used": [
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         "Label": "slicer",
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         "Used": [
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         "Label": "pngappend",
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         "Used": [
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+          "urn:94631ece-05be-4034-979b-e53e9cba0f73",
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         "Label": "pngappend",
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+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend example_func2highres1.png example_func2highres2.png example_func2highres.png",
         "Used": [
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-          "urn:a11d9f65-21e9-4639-956e-2670338fb5a4"
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         "Label": "rm",
-        "AssociatedWith": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
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-          "urn:a11d9f65-21e9-4639-956e-2670338fb5a4"
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       {
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         "Label": "rm",
-        "AssociatedWith": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
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+          "urn:91373dd3-513c-4e6a-a1a1-b11ca3ab6fd7"
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       {
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         "Label": "mcflirt",
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+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
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         "Used": [
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+          "urn:a6a7d9c7-b476-48d8-b50d-0884eb184eb3"
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+        "@id": "urn:9d505fad-bfb4-4d42-9041-d332f14f09ef",
         "Label": "Make directory",
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+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/bin/mkdir -p mc",
         "Used": []
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         "Label": "mv",
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         "Command": "/bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc",
         "Used": [
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
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         "Used": [
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         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
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         "Used": [
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         "Label": "fslmaths",
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         "Label": "fslmaths",
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-          "urn:0cb803af-3a44-41a2-8c2c-049d588667e8"
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         "Label": "fslstats",
-        "AssociatedWith": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
+        "AssociatedWith": "urn:8063eb5f-7ced-4e8d-ab4b-70708b7b58cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslstats prefiltered_func_data_bet -p 2 -p 98",
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+          "urn:bb968bcf-419b-4bf7-a6c7-5ac98405a73f"
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         "Label": "fslmaths",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths prefiltered_func_data_bet -thr 74.4585571 -Tmin -bin mask -odt char",
         "Used": [
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+          "urn:bb968bcf-419b-4bf7-a6c7-5ac98405a73f"
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         "Label": "fslstats",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslstats prefiltered_func_data_mcf -k mask -p 50",
         "Used": [
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         "Label": "Make directory",
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@@ -1028,25 +1028,25 @@
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@@ -1054,7 +1054,7 @@
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@@ -1102,13 +1102,13 @@
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@@ -1116,16 +1116,16 @@
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@@ -1133,250 +1133,250 @@
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-        "GeneratedBy": "urn:e5d28661-d83f-4e8e-a350-8605712fa18e",
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         "digest": {
@@ -1384,25 +1384,25 @@
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         "AtLocation": "prefiltered_func_data_mcf",
-        "GeneratedBy": "urn:aa1738e1-fffa-413c-b8ed-5027efbeb699",
+        "GeneratedBy": "urn:f86a6c6f-3ced-4686-8ed9-79c1377c287a",
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@@ -1410,7 +1410,7 @@
         }
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       {
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@@ -1418,7 +1418,7 @@
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       {
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         "digest": {
@@ -1426,7 +1426,7 @@
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       {
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         "digest": {
@@ -1434,7 +1434,7 @@
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       {
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@@ -1442,7 +1442,7 @@
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       {
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         "digest": {
@@ -1450,34 +1450,34 @@
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-        "GeneratedBy": "urn:695559a1-9da1-4abf-8ffd-18797ec1ce59",
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         "AtLocation": "prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms",
         "digest": {
@@ -1485,34 +1485,34 @@
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       {
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-        "GeneratedBy": "urn:bd75912f-9996-4e47-a434-dce8b0d6fc39",
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       {
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         "digest": {
@@ -1520,106 +1520,106 @@
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       {
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         "AtLocation": "prefiltered_func_data_smooth",
-        "GeneratedBy": "urn:94d92ce2-3775-4ebf-893b-44c9e3d6dc68",
+        "GeneratedBy": "urn:5929d021-c389-40b8-805a-044f09a71d42",
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         "Label": "prefiltered_func_data_intnorm",
         "AtLocation": "prefiltered_func_data_intnorm",
-        "GeneratedBy": "urn:a7cf4d8b-0646-448e-9f96-fa0ee0c60dd7",
+        "GeneratedBy": "urn:24a199cf-30a1-4540-a7d5-9830fee1989a",
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         "Label": "tempMean",
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-        "GeneratedBy": "urn:9069fe27-aedd-4de1-b70a-6c1dd553f1a3",
+        "GeneratedBy": "urn:82749c15-7a83-4b5d-abb9-b74aae16fa81",
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-        "@id": "urn:573da5fb-2825-437b-b7e4-0de6289e15e3",
+        "@id": "urn:1e5f5881-04e7-40df-85b6-db6338a8b9e1",
         "Label": "15.0",
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-        "GeneratedBy": "urn:eb23f479-d3a4-4687-93f2-ff639fff3aaf",
+        "GeneratedBy": "urn:72122e17-9b35-403d-b214-abe7be549e59",
         "digest": {
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+        "@id": "urn:d2a1e303-a574-44e4-84ac-85293d3844d3",
         "Label": "prefiltered_func_data_tempfilt",
         "AtLocation": "prefiltered_func_data_tempfilt",
         "digest": {
@@ -1627,25 +1627,25 @@
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       {
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-        "GeneratedBy": "urn:0d5637ef-3522-47f3-8fbe-129a0ffa7c36",
+        "GeneratedBy": "urn:a1b863ef-5a4f-4406-b100-3dddd647ef1c",
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-        "GeneratedBy": "urn:4fed7ac4-779c-4b17-8c30-5c636dc89acd",
+        "GeneratedBy": "urn:9f31b8ab-69ee-49ec-82c4-c8359d7de3c8",
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         "Label": "prefiltered_func_data*",
         "AtLocation": "prefiltered_func_data*",
         "digest": {
@@ -1653,16 +1653,16 @@
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       {
-        "@id": "urn:2628c9dd-445d-4d40-a564-4cf6c295da04",
+        "@id": "urn:6f8fe425-239f-4dfa-8b97-95d38d64b317",
         "Label": "custom_timing_files",
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-        "GeneratedBy": "urn:70c07c46-ffd5-4ef3-819e-2ee6f5265dd5",
+        "GeneratedBy": "urn:165bae48-7dae-427e-b10a-d1e238d9a17a",
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         "Label": "sub-01_tone_counting.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
         "digest": {
@@ -1670,22 +1670,22 @@
         }
       },
       {
-        "@id": "urn:14941916-403b-4ccc-b73e-6d0d634b013a",
+        "@id": "urn:7af713f3-b8a5-4a79-95fd-8e6c5f25a64b",
         "Label": "ev1.txt",
         "AtLocation": "custom_timing_files/ev1.txt",
-        "GeneratedBy": "urn:7e94df31-aad8-46fa-bf0a-8485fc32c054"
+        "GeneratedBy": "urn:28317228-ec2f-447f-8c78-e171c1cbb61d"
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         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:d48acc36-5a4d-48e0-855e-835424475927",
+        "GeneratedBy": "urn:68079d2a-f99a-4365-a455-48bcf66b0699",
         "digest": {
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+        "@id": "urn:3cb24f05-3dce-4413-98ce-0b5f694af482",
         "Label": "sub-01_tone_counting_probe.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1693,13 +1693,13 @@
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       {
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         "AtLocation": "custom_timing_files/ev2.txt",
-        "GeneratedBy": "urn:f6f17b91-cda7-42ea-8792-21f60ef9b5d4"
+        "GeneratedBy": "urn:b5ab0ba4-4889-4f87-a5c8-817a91c4de71"
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       {
-        "@id": "urn:b185efef-8306-47df-9b4e-4d359d1ed28a",
+        "@id": "urn:2fca9e42-28fe-4360-bfe7-d3f1e1490b0f",
         "Label": "res4d",
         "AtLocation": "stats/res4d",
         "digest": {
@@ -1707,16 +1707,16 @@
         }
       },
       {
-        "@id": "urn:84f0b77a-0276-4ce9-9370-78ab87dbbe31",
+        "@id": "urn:6d0835cf-78c8-4e50-931c-dc55ff948363",
         "Label": "smoothness",
         "AtLocation": "stats/smoothness",
-        "GeneratedBy": "urn:e215ad6e-d4e7-4b13-9ba1-5353b1dddee0",
+        "GeneratedBy": "urn:c6a57e08-7b1d-4b28-aa5c-fc678f8a6bfe",
         "digest": {
           "sha256": "67b0aaf95a257beff60d331b56265034807ca51e67e2d312d481d5835ef0b1d0"
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       {
-        "@id": "urn:25e1047c-feaf-4803-91ac-a746fbc5285f",
+        "@id": "urn:9e567321-3457-41ae-bca6-51f4ab7a9e7f",
         "Label": "zstat1",
         "AtLocation": "stats/zstat1",
         "digest": {
@@ -1724,16 +1724,16 @@
         }
       },
       {
-        "@id": "urn:55fb5f69-aafd-48d6-a779-1beb8875af98",
+        "@id": "urn:3790699d-27ec-4cd2-b718-ba21560d41e5",
         "Label": "thresh_zstat1",
         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:06eef3af-6ad7-48cb-8b69-1ff6facdaa33",
+        "GeneratedBy": "urn:bacd31a3-804a-4288-ac9a-a0a655acb9ef",
         "digest": {
           "sha256": "662e7ba670e124d15bb3cc18b818868f76604578034b524c8882f35fc5db413f"
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-        "@id": "urn:bba0a903-5eff-4d42-9e42-8c0758430f9b",
+        "@id": "urn:955d6933-0d82-4f2b-85c2-0958b8acfeda",
         "Label": "zstat2",
         "AtLocation": "stats/zstat2",
         "digest": {
@@ -1741,16 +1741,16 @@
         }
       },
       {
-        "@id": "urn:377e3ee2-d526-4e90-b489-8992ce228785",
+        "@id": "urn:8ddb9164-7c2d-4c97-a86b-2b3ce2a96d47",
         "Label": "thresh_zstat2",
         "AtLocation": "thresh_zstat2",
-        "GeneratedBy": "urn:1033b2b2-fd65-4e68-9c8d-cd59ef44b50c",
+        "GeneratedBy": "urn:5fafa766-c98b-4270-a2d7-7245919ec15c",
         "digest": {
           "sha256": "fe707ed68d72f4376668be45a2030f2d00fa81534a3e95bf92b6a499fa8595bd"
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       {
-        "@id": "urn:81c37383-2699-4e08-9b37-d05476f53749",
+        "@id": "urn:f130abec-a52a-40eb-b88c-c66c103f5f6c",
         "Label": "zstat3",
         "AtLocation": "stats/zstat3",
         "digest": {
@@ -1758,16 +1758,16 @@
         }
       },
       {
-        "@id": "urn:394dee60-f149-43ca-a524-03059a7b9cee",
+        "@id": "urn:a6fb9f0f-15e6-4a8f-8544-b59c36ef72cb",
         "Label": "thresh_zstat3",
         "AtLocation": "thresh_zstat3",
-        "GeneratedBy": "urn:f04d7a27-d1d5-4be0-b103-38bdcd5eb0e3",
+        "GeneratedBy": "urn:6f461622-bc47-4e79-b351-2948972c5391",
         "digest": {
           "sha256": "d0f88769369dc8215d7373817e8f9a48482b508bb9deb2ca29904069bb23f484"
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       {
-        "@id": "urn:253de491-b4d6-4138-ba37-a6eb6dd22228",
+        "@id": "urn:f0f4353c-7637-4227-92b0-58e0afa1d0b9",
         "Label": "zstat4",
         "AtLocation": "stats/zstat4",
         "digest": {
@@ -1775,16 +1775,16 @@
         }
       },
       {
-        "@id": "urn:e681cd2e-df3c-4488-a64d-0261a6b46929",
+        "@id": "urn:5a10086e-715a-46fb-a249-a2bb0dae791c",
         "Label": "thresh_zstat4",
         "AtLocation": "thresh_zstat4",
-        "GeneratedBy": "urn:31c9b029-310d-4021-aa62-c0dbd25fc2e0",
+        "GeneratedBy": "urn:72309cbc-a1ff-4ece-b74d-7ab14d5329ec",
         "digest": {
           "sha256": "7d0ee58ccf12389afd32deb44a620da2bd1f2ebfa70a72c43328055de692ff98"
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       {
-        "@id": "urn:2a023c53-e9a3-423b-ae8f-67e446826eb8",
+        "@id": "urn:3c8bd9ea-f940-4527-8bf8-7e2f9a190099",
         "Label": "zstat5",
         "AtLocation": "stats/zstat5",
         "digest": {
@@ -1792,16 +1792,16 @@
         }
       },
       {
-        "@id": "urn:c88080b6-995a-41c4-88ce-a7d6c176e52f",
+        "@id": "urn:43d395c3-1ccd-4588-ac63-d743e9d3d44d",
         "Label": "thresh_zstat5",
         "AtLocation": "thresh_zstat5",
-        "GeneratedBy": "urn:55fc28fb-de6a-46a5-9b3a-8e8ddfddbff8",
+        "GeneratedBy": "urn:c108b15e-d09b-48b6-99b8-a0aa3bcaa657",
         "digest": {
           "sha256": "1f5c0f183460f4e90178ce2e1778cf74f2b9cbb163602d06d7b10023caef88c9"
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       {
-        "@id": "urn:7cb60c42-3c85-481f-9aca-b86d2fc5dbd0",
+        "@id": "urn:31afdc2f-30f8-4682-a3d6-58f886590e75",
         "Label": "zstat6",
         "AtLocation": "stats/zstat6",
         "digest": {
@@ -1809,16 +1809,16 @@
         }
       },
       {
-        "@id": "urn:d1b4cbde-57bb-48bc-b03c-333cbba29eca",
+        "@id": "urn:13612015-a8d2-4871-b508-f4bb94ecc89b",
         "Label": "thresh_zstat6",
         "AtLocation": "thresh_zstat6",
-        "GeneratedBy": "urn:a6417bc2-bf60-4cfc-87b3-969db1d6c23c",
+        "GeneratedBy": "urn:4dc65753-932f-49f4-b53e-3d8855fa336e",
         "digest": {
           "sha256": "9e3f489bd3068058a3f61a8aaaa0cc5b9ea4f4180ecff380d03a899d0cf3a976"
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       {
-        "@id": "urn:a5426e27-b44f-4ee5-9f79-99f13c820e2d",
+        "@id": "urn:226bd3cb-3e0d-4c85-82cc-7baa47c0f26e",
         "Label": "zfstat1",
         "AtLocation": "stats/zfstat1",
         "digest": {
@@ -1826,16 +1826,16 @@
         }
       },
       {
-        "@id": "urn:35e8fbfa-42f0-43c2-9d95-995255ab0223",
+        "@id": "urn:8465e4d8-80f6-4f0f-b165-cb30f2704a4d",
         "Label": "thresh_zfstat1",
         "AtLocation": "thresh_zfstat1",
-        "GeneratedBy": "urn:601dd07b-c372-4753-ae81-340c406e60c7",
+        "GeneratedBy": "urn:39d91d05-0337-4cde-8b33-86c43a213344",
         "digest": {
           "sha256": "e4e927e247bdf8ff3b58b41cbb9db7643b27df1f7578c506950eb4b1ca2d0031"
         }
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       {
-        "@id": "urn:64ef5f8f-e0b2-469c-a5bc-3abbef036f7e",
+        "@id": "urn:63b1ead7-b09f-4f03-8bc6-1d1d547c045f",
         "Label": "zfstat2",
         "AtLocation": "stats/zfstat2",
         "digest": {
@@ -1843,16 +1843,16 @@
         }
       },
       {
-        "@id": "urn:0b66eade-b9cf-457f-a7a8-520a4b9771de",
+        "@id": "urn:71bf85a6-3335-409a-a4bb-c2fa29231c14",
         "Label": "thresh_zfstat2",
         "AtLocation": "thresh_zfstat2",
-        "GeneratedBy": "urn:4ab0a510-1e34-41b9-a913-9db8b8c40537",
+        "GeneratedBy": "urn:83e679fa-bc45-496a-b380-e64dbf09045e",
         "digest": {
           "sha256": "c298297997e4640c4c2d803314ca8cee706d302781975cdc53946aa6ca0d69c1"
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       },
       {
-        "@id": "urn:30eab55a-d0aa-4e94-92ad-9d628fcac20d",
+        "@id": "urn:73d43f31-95c3-4568-b492-5ca4371c4f13",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
         "digest": {
@@ -1860,25 +1860,25 @@
         }
       },
       {
-        "@id": "urn:3f7a5206-52c1-41b7-aa5a-aad9f9eccf59",
+        "@id": "urn:9b12c597-55e3-4cc1-8d36-7229cbd4b64a",
         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:e0cf6796-f3d4-4408-801a-580d81d2167d",
+        "GeneratedBy": "urn:4ae04bd2-f829-465d-967b-51490c165efc",
         "digest": {
           "sha256": "b28c170e33d2917cac55183786616a9e976e5e7f30dc7c8666341f12ed6d0277"
         }
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       {
-        "@id": "urn:476b8803-80cd-43c7-8ad8-fd6bd664a6b0",
+        "@id": "urn:9d77733e-7a2d-451f-970e-c6292ca36386",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:e0cf6796-f3d4-4408-801a-580d81d2167d",
+        "GeneratedBy": "urn:4ae04bd2-f829-465d-967b-51490c165efc",
         "digest": {
           "sha256": "bf3b603569da6dbe3d6f0e8667d346f3ac943c9d01d2fc9743ce17abeb1547fb"
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       {
-        "@id": "urn:9f99c103-7de0-43ce-b4d8-fd4eda8b8506",
+        "@id": "urn:0e2032e9-ee9a-41f0-bd5b-53089bd62c12",
         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1886,7 +1886,7 @@
         }
       },
       {
-        "@id": "urn:8a8fc13d-f4c7-485c-a2f7-f49f774d29de",
+        "@id": "urn:f4fa8ecb-fe15-40ca-92ed-74c9e1fe18df",
         "Label": "cope2",
         "AtLocation": "stats/cope2",
         "digest": {
@@ -1894,25 +1894,25 @@
         }
       },
       {
-        "@id": "urn:875689a9-801d-463e-8d24-7a8ee272ae5f",
+        "@id": "urn:19e57842-9830-4d40-b483-414e17fe13b2",
         "Label": "cluster_mask_zstat2",
         "AtLocation": "cluster_mask_zstat2",
-        "GeneratedBy": "urn:4b96e2d7-8c88-43d1-99a1-792255a1e144",
+        "GeneratedBy": "urn:12dfa6ff-144e-4f66-9fd4-2409d56c120d",
         "digest": {
           "sha256": "b88bb3cd4d809827a5c0a45cb4f6aac570cb25b7e056d5986d81d879548da121"
         }
       },
       {
-        "@id": "urn:1088143c-d7d4-4f9d-98ed-a958a30f0650",
+        "@id": "urn:ecb956c2-4afd-45b2-836a-a5deb9acec5b",
         "Label": "cope2",
         "AtLocation": "stats/cope2",
-        "GeneratedBy": "urn:4b96e2d7-8c88-43d1-99a1-792255a1e144",
+        "GeneratedBy": "urn:12dfa6ff-144e-4f66-9fd4-2409d56c120d",
         "digest": {
           "sha256": "5f073baabd78c1c473fed55b511738f0ffe30d9fc1f23352a16ec058daacd88c"
         }
       },
       {
-        "@id": "urn:a51008db-25b7-4e5b-9dd4-3332e54c1340",
+        "@id": "urn:068a56ed-fa24-4ab2-9781-d333a439bf94",
         "Label": "cluster_zstat2",
         "AtLocation": "cluster_zstat2",
         "digest": {
@@ -1920,7 +1920,7 @@
         }
       },
       {
-        "@id": "urn:3d0dda92-91be-4978-95fe-28b76df35115",
+        "@id": "urn:8679d689-6609-4dd7-85a2-330a667c96e9",
         "Label": "cope3",
         "AtLocation": "stats/cope3",
         "digest": {
@@ -1928,25 +1928,25 @@
         }
       },
       {
-        "@id": "urn:56a41cb2-9d52-42bc-bbba-a4eecabc8257",
+        "@id": "urn:5c190260-bee3-477a-956e-d0675ac7e19e",
         "Label": "cluster_mask_zstat3",
         "AtLocation": "cluster_mask_zstat3",
-        "GeneratedBy": "urn:14ce5791-494b-4a0b-a1a6-701796a26de3",
+        "GeneratedBy": "urn:acd4e7d2-df0c-48fb-aa83-679b3df6591c",
         "digest": {
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         }
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       {
-        "@id": "urn:4ce35397-8a9e-4415-89a4-fb9bfe94711d",
+        "@id": "urn:9d964c85-58a1-40e2-8ea1-06c596be6661",
         "Label": "cope3",
         "AtLocation": "stats/cope3",
-        "GeneratedBy": "urn:14ce5791-494b-4a0b-a1a6-701796a26de3",
+        "GeneratedBy": "urn:acd4e7d2-df0c-48fb-aa83-679b3df6591c",
         "digest": {
           "sha256": "4f5e165fb3b62e5ef5397e9f93b4572ba23f3ffe3c9f118e8a2a9cba52e2fe0e"
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       },
       {
-        "@id": "urn:d2b04583-62a4-4acb-a5b7-533bf65853b2",
+        "@id": "urn:5d51bc01-580e-4fb9-a4b5-453ef634cd1a",
         "Label": "cluster_zstat3",
         "AtLocation": "cluster_zstat3",
         "digest": {
@@ -1954,7 +1954,7 @@
         }
       },
       {
-        "@id": "urn:b8905fc6-7f60-457b-ac15-bdaba9e4ea83",
+        "@id": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
         "Label": "cope4",
         "AtLocation": "stats/cope4",
         "digest": {
@@ -1962,25 +1962,25 @@
         }
       },
       {
-        "@id": "urn:df45ffb2-0fc0-4ac6-b8e5-4e20a863bc34",
+        "@id": "urn:7c54373f-c93e-4f5c-b2d9-d3a7b7ea47aa",
         "Label": "cluster_mask_zstat4",
         "AtLocation": "cluster_mask_zstat4",
-        "GeneratedBy": "urn:4aed242b-89cb-413f-a4af-892df17b2585",
+        "GeneratedBy": "urn:f1197319-954d-477d-bb96-7dee72a45bd7",
         "digest": {
           "sha256": "236c7040f9f44c5f102ed2cc3fad96a03bcdf369e764ef6bfea5b18d75e9abb5"
         }
       },
       {
-        "@id": "urn:0eed29c2-767d-42bf-9aa3-d1747f773e3a",
+        "@id": "urn:3f5fcc63-c232-47b9-9bfe-231b359c95b9",
         "Label": "cope4",
         "AtLocation": "stats/cope4",
-        "GeneratedBy": "urn:4aed242b-89cb-413f-a4af-892df17b2585",
+        "GeneratedBy": "urn:f1197319-954d-477d-bb96-7dee72a45bd7",
         "digest": {
           "sha256": "b6f8f8cfc79a9728843c597031f0d708ffe70f4865e3ec6456482bcf5e988347"
         }
       },
       {
-        "@id": "urn:cf4823ef-3d1f-43bb-b014-d95d7677f3ab",
+        "@id": "urn:e648c12f-577e-426e-b264-ef77b5359fad",
         "Label": "cluster_zstat4",
         "AtLocation": "cluster_zstat4",
         "digest": {
@@ -1988,7 +1988,7 @@
         }
       },
       {
-        "@id": "urn:20bb5ec6-2f0e-43b7-862c-bcae7b5f0c2f",
+        "@id": "urn:6c68e7db-4b96-4b16-b064-fbf79cad5a41",
         "Label": "cope5",
         "AtLocation": "stats/cope5",
         "digest": {
@@ -1996,25 +1996,25 @@
         }
       },
       {
-        "@id": "urn:96b316d6-37f1-4855-92ad-1ee08a6fb44a",
+        "@id": "urn:a044d7d6-c80d-4b3f-873d-e0fae65af109",
         "Label": "cluster_mask_zstat5",
         "AtLocation": "cluster_mask_zstat5",
-        "GeneratedBy": "urn:4c7571d2-7358-46a9-aa8d-17d024593f46",
+        "GeneratedBy": "urn:6ed8d342-b419-4019-bef6-278dea44193e",
         "digest": {
           "sha256": "c017022e8f02a206ba703043a7cca57d23cbb1327fe198615792ef86a6d9e088"
         }
       },
       {
-        "@id": "urn:7422254b-05f7-476f-9a0f-4e86f4333240",
+        "@id": "urn:aae4ed70-8823-4964-83b4-5d2f17e7fcc3",
         "Label": "cope5",
         "AtLocation": "stats/cope5",
-        "GeneratedBy": "urn:4c7571d2-7358-46a9-aa8d-17d024593f46",
+        "GeneratedBy": "urn:6ed8d342-b419-4019-bef6-278dea44193e",
         "digest": {
           "sha256": "cce90c23c0b7646ad6ed60fe900a84c9a92a151e90e51a3c8d5bf609e48e7e37"
         }
       },
       {
-        "@id": "urn:ee78b807-2592-4d04-a5fe-a598c79a8f54",
+        "@id": "urn:394e603e-0619-459e-a1c1-6dffeac3be20",
         "Label": "cluster_zstat5",
         "AtLocation": "cluster_zstat5",
         "digest": {
@@ -2022,7 +2022,7 @@
         }
       },
       {
-        "@id": "urn:3eefdc1a-c3e2-427b-be45-b122ff464a33",
+        "@id": "urn:029ac7ce-e0ca-4637-8d00-caec11c22c76",
         "Label": "cope6",
         "AtLocation": "stats/cope6",
         "digest": {
@@ -2030,25 +2030,25 @@
         }
       },
       {
-        "@id": "urn:489ee359-4af7-4f70-b93c-6fd638b112b3",
+        "@id": "urn:2eabf927-c80e-4338-b26a-0d07283fc38a",
         "Label": "cluster_mask_zstat6",
         "AtLocation": "cluster_mask_zstat6",
-        "GeneratedBy": "urn:fbe8da44-f727-45b4-acea-f9c466ce910f",
+        "GeneratedBy": "urn:2a83909e-befd-42a8-bfd8-2c3310b0f853",
         "digest": {
           "sha256": "b443499c0537a51d05605fa88d988683ccda5aedfeb1959b3a465864cfc16476"
         }
       },
       {
-        "@id": "urn:3135e215-2b94-4562-8b8e-a48f87f57f2d",
+        "@id": "urn:1c4d8379-a962-4530-b203-961ea5164edd",
         "Label": "cope6",
         "AtLocation": "stats/cope6",
-        "GeneratedBy": "urn:fbe8da44-f727-45b4-acea-f9c466ce910f",
+        "GeneratedBy": "urn:2a83909e-befd-42a8-bfd8-2c3310b0f853",
         "digest": {
           "sha256": "f45749b02e0f09e62c96d79da8d85078fec9357d695e8bc30eba2e0c0658fedb"
         }
       },
       {
-        "@id": "urn:b1ffe3d9-ecc1-40f5-b3c4-b2a6dd8a0b7c",
+        "@id": "urn:6595ac2d-bf43-4a54-8cd9-f27e08178d8b",
         "Label": "cluster_zstat6",
         "AtLocation": "cluster_zstat6",
         "digest": {
@@ -2056,16 +2056,16 @@
         }
       },
       {
-        "@id": "urn:e9135b95-10d8-443a-b5c7-42c27e1bb758",
+        "@id": "urn:0db9f667-31ec-4cc1-b7d6-ddb0ea21f714",
         "Label": "cluster_mask_zfstat1",
         "AtLocation": "cluster_mask_zfstat1",
-        "GeneratedBy": "urn:990c7146-147f-4591-9407-8fc0f6f7ca55",
+        "GeneratedBy": "urn:9ec24ab3-4b92-46b9-9266-3c5e655db29c",
         "digest": {
           "sha256": "3523a5abe83ae8c76dd74f74632bc34163aac475152d48a6b79f37eca7dfe022"
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diff --git a/examples/from_parsers/fsl/fsl_gaussian_report_log.jsonld b/examples/from_parsers/fsl/fsl_gaussian_report_log.jsonld
index ad51ffcd8..67a8725e3 100644
--- a/examples/from_parsers/fsl/fsl_gaussian_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_gaussian_report_log.jsonld
@@ -4,7 +4,7 @@
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@@ -978,25 +978,25 @@
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@@ -1004,7 +1004,7 @@
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@@ -1012,7 +1012,7 @@
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@@ -1020,7 +1020,7 @@
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@@ -1028,7 +1028,7 @@
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@@ -1036,7 +1036,7 @@
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@@ -1044,34 +1044,34 @@
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@@ -1079,34 +1079,34 @@
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@@ -1114,106 +1114,106 @@
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+        "GeneratedBy": "urn:8bdae2ee-5aba-4cba-a854-3155f055fb73",
         "digest": {
           "sha256": "5629950501d629b6a15792e71751c4e17494fcd62e0f2b2ee8a3bc106735786e"
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       {
-        "@id": "urn:994296a3-49bb-4c51-a3b9-96095c772750",
+        "@id": "urn:3fb67843-9a96-48ae-b535-b18a05d6de44",
         "Label": "prefiltered_func_data_smooth",
         "AtLocation": "prefiltered_func_data_smooth",
-        "GeneratedBy": "urn:35ff0a25-7087-4dde-92e3-84a2069160fa",
+        "GeneratedBy": "urn:a9093ed2-7f77-49ac-aef1-ff6333feccdc",
         "digest": {
           "sha256": "2a4901d885fce0b083c9f99364da8dcff184635e74ab011f53a68cfc6827b429"
         }
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       {
-        "@id": "urn:a6816927-efa4-41b8-9288-3137c8b366a0",
+        "@id": "urn:9a26f3e5-86c2-4593-81f3-cd533d64357d",
         "Label": "prefiltered_func_data_smooth",
         "AtLocation": "prefiltered_func_data_smooth",
-        "GeneratedBy": "urn:cf039742-a7cf-4661-8c5a-8028ee16f56b",
+        "GeneratedBy": "urn:af85f6f2-37a6-47f6-b706-5bb7237597f3",
         "digest": {
           "sha256": "2a4901d885fce0b083c9f99364da8dcff184635e74ab011f53a68cfc6827b429"
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       },
       {
-        "@id": "urn:f76d19e5-b0b5-45bc-a574-b35b52c5604a",
+        "@id": "urn:0f68c0d2-fae0-4d24-9eac-8fb527e05cca",
         "Label": "prefiltered_func_data_intnorm",
         "AtLocation": "prefiltered_func_data_intnorm",
-        "GeneratedBy": "urn:66c6f4a5-e5db-46b2-b07c-e741461d17cd",
+        "GeneratedBy": "urn:4fd3e945-daaa-4e92-91ab-7e2849037ffa",
         "digest": {
           "sha256": "0698a276f6f0fdccfb06033926d333a176503a09aaa87b78384fbffbf1c54dee"
         }
       },
       {
-        "@id": "urn:2b13402b-a51c-4043-8706-ad2728b1668d",
+        "@id": "urn:16efefb5-f541-4233-82d6-1e9fe0e35bce",
         "Label": "tempMean",
         "AtLocation": "tempMean",
-        "GeneratedBy": "urn:47364376-8009-46b5-9c2c-50f39f9aa7b7",
+        "GeneratedBy": "urn:3b721c25-1fab-41a2-a931-79bbaf958ba1",
         "digest": {
           "sha256": "1a01513c76bc17516b60df315a1922789ce79d72e66e105fbf2723df9cb1b038"
         }
       },
       {
-        "@id": "urn:816045b3-2730-4afa-9cce-255578e9966f",
+        "@id": "urn:712101dd-72bf-4522-84bd-2206e7600948",
         "Label": "15.0",
         "AtLocation": "15.0",
-        "GeneratedBy": "urn:1bccfb06-3514-411e-bc4d-7d5021d773b8",
+        "GeneratedBy": "urn:9080e1ed-e597-485c-b563-6642ff91b475",
         "digest": {
           "sha256": "552db91328a881034f16ec50203ba34d4af448f52c616eb28db6c07aa575a286"
         }
       },
       {
-        "@id": "urn:7af6a3e3-e627-4955-bd25-8d0281ef9415",
+        "@id": "urn:a91c074f-a725-4f84-aa83-73630b62aadf",
         "Label": "prefiltered_func_data_tempfilt",
         "AtLocation": "prefiltered_func_data_tempfilt",
         "digest": {
@@ -1221,25 +1221,25 @@
         }
       },
       {
-        "@id": "urn:1584680b-a5c4-45be-94be-7b696c8e2397",
+        "@id": "urn:0238939f-61b0-44a5-9e78-6dffb0b0b5e3",
         "Label": "filtered_func_data",
         "AtLocation": "filtered_func_data",
-        "GeneratedBy": "urn:a1b2679b-c5c0-441b-a89d-c14f0248f813",
+        "GeneratedBy": "urn:4623a3e4-04d8-495c-9841-a8f1e6d88086",
         "digest": {
           "sha256": "2a1854e3b48a54f88e063191e25159015a0afbd300d18a1cfda37b4b68a1ee69"
         }
       },
       {
-        "@id": "urn:e4dbc681-d344-4eb1-ac0c-12733bcdbb55",
+        "@id": "urn:d1d82229-9f97-4cbc-bec1-e900fc856882",
         "Label": "mean_func",
         "AtLocation": "mean_func",
-        "GeneratedBy": "urn:18a3d038-b80d-44fc-9706-301753499bc1",
+        "GeneratedBy": "urn:a2aaea60-1d90-4ef3-926f-fec383eccbe1",
         "digest": {
           "sha256": "5629950501d629b6a15792e71751c4e17494fcd62e0f2b2ee8a3bc106735786e"
         }
       },
       {
-        "@id": "urn:9b0f44c5-5e3f-4234-9bf9-66c46523a3a0",
+        "@id": "urn:c9306796-d6bc-4080-a91a-444981bbbf61",
         "Label": "prefiltered_func_data*",
         "AtLocation": "prefiltered_func_data*",
         "digest": {
@@ -1247,16 +1247,16 @@
         }
       },
       {
-        "@id": "urn:44cd8e21-b13b-4286-b2af-f17a942c5a99",
+        "@id": "urn:4c5b85fe-32e6-4d2c-b34c-8a2fc87aec51",
         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:21d86d5a-4768-45a5-90d2-055e94a0aa9b",
+        "GeneratedBy": "urn:cfbdc37d-4f9f-4297-b2ed-b01ff2a85ed0",
         "digest": {
           "sha256": "1d7e19792328d5040f2f9fb3c15d59de90fc771785f81c67039a043bd5f2ed20"
         }
       },
       {
-        "@id": "urn:5207724d-e906-4471-903b-6cab18cd9c26",
+        "@id": "urn:dc32a6ba-52b8-4331-8c20-c103684d9607",
         "Label": "sub-01_tone_counting.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
         "digest": {
@@ -1264,22 +1264,22 @@
         }
       },
       {
-        "@id": "urn:867c3f3e-61a4-4e15-868f-d6f881110e8b",
+        "@id": "urn:0e12140c-f0fa-4b1c-afdc-6b4072852687",
         "Label": "ev1.txt",
         "AtLocation": "custom_timing_files/ev1.txt",
-        "GeneratedBy": "urn:9c79005b-4a9a-49e5-9b9e-e8bfd5752c8e"
+        "GeneratedBy": "urn:0c8f4df2-5718-4f96-b85b-1f9fb88c9ad1"
       },
       {
-        "@id": "urn:aeac332e-bce4-4c17-b94a-d85ae2953fed",
+        "@id": "urn:d61ba711-53ab-409c-b0f7-ca672b380ffe",
         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:107e60e5-e48c-440a-b943-4a2265ab0c43",
+        "GeneratedBy": "urn:23375a72-1ee5-4128-8d10-54fabae7b00c",
         "digest": {
           "sha256": "1d7e19792328d5040f2f9fb3c15d59de90fc771785f81c67039a043bd5f2ed20"
         }
       },
       {
-        "@id": "urn:3e1fcf67-d0c6-41ce-b2d4-494232f1d5fe",
+        "@id": "urn:70a63de5-2bb7-4f9d-b86b-0a8330de087f",
         "Label": "sub-01_tone_counting_probe.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1287,13 +1287,13 @@
         }
       },
       {
-        "@id": "urn:6f5054a4-f6c6-4829-b94a-f8b6b8df267a",
+        "@id": "urn:58233196-f676-4b22-b7b6-d2a803c73967",
         "Label": "ev2.txt",
         "AtLocation": "custom_timing_files/ev2.txt",
-        "GeneratedBy": "urn:fe6d6a5a-eb3e-4181-805e-a2e2fe4fec50"
+        "GeneratedBy": "urn:1ff46c81-17ab-417c-898c-5c967b8b6b74"
       },
       {
-        "@id": "urn:abf58822-094d-478e-8a84-f7519450b542",
+        "@id": "urn:78794883-5fae-4bcb-95e2-79995ba6442e",
         "Label": "res4d",
         "AtLocation": "stats/res4d",
         "digest": {
@@ -1301,16 +1301,16 @@
         }
       },
       {
-        "@id": "urn:209a7ec7-d866-4295-a415-a6b5798cc3de",
+        "@id": "urn:a214e64f-f623-475a-addf-0f8f08afe372",
         "Label": "smoothness",
         "AtLocation": "stats/smoothness",
-        "GeneratedBy": "urn:b5cd528a-7c8f-4f15-ab9f-0bd7bca967ca",
+        "GeneratedBy": "urn:47a4a930-45a7-48f8-afc5-4e5281aa9e2c",
         "digest": {
           "sha256": "67b0aaf95a257beff60d331b56265034807ca51e67e2d312d481d5835ef0b1d0"
         }
       },
       {
-        "@id": "urn:23e29248-772c-45f4-8176-869d5bb08030",
+        "@id": "urn:3f2ecad8-a8e5-493a-8abc-0ab3f1401d31",
         "Label": "zstat1",
         "AtLocation": "stats/zstat1",
         "digest": {
@@ -1318,16 +1318,16 @@
         }
       },
       {
-        "@id": "urn:b7e9d248-a3aa-4de7-bd2a-0c2db25f4d01",
+        "@id": "urn:086ca1fc-cef0-4bd7-9a98-1418e4dd7814",
         "Label": "thresh_zstat1",
         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:7f47301c-e203-4fac-b2bd-efb02325b318",
+        "GeneratedBy": "urn:36155e48-6bd1-4f61-816c-dd5d0dbf062a",
         "digest": {
           "sha256": "662e7ba670e124d15bb3cc18b818868f76604578034b524c8882f35fc5db413f"
         }
       },
       {
-        "@id": "urn:b1ef0ad0-b2b0-44dd-9931-2539fcf6b38f",
+        "@id": "urn:1daee25e-6e10-4a25-81f8-cf7861e3aaed",
         "Label": "zstat2",
         "AtLocation": "stats/zstat2",
         "digest": {
@@ -1335,16 +1335,16 @@
         }
       },
       {
-        "@id": "urn:e8a448c0-04d3-4137-bc5d-41cee7d54402",
+        "@id": "urn:da2f36c8-f656-4f6e-a4a8-8f2618a20752",
         "Label": "thresh_zstat2",
         "AtLocation": "thresh_zstat2",
-        "GeneratedBy": "urn:4dd0b74d-0f56-46f4-a431-38c65782ceb7",
+        "GeneratedBy": "urn:c8fa209f-5ecb-443c-9b74-ba12277d8e19",
         "digest": {
           "sha256": "fe707ed68d72f4376668be45a2030f2d00fa81534a3e95bf92b6a499fa8595bd"
         }
       },
       {
-        "@id": "urn:3949d23a-4ffc-49cf-90b3-b9af6d0ecad5",
+        "@id": "urn:aec43d8a-1acf-483e-839f-a6b9d0413d1e",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
         "digest": {
@@ -1352,25 +1352,25 @@
         }
       },
       {
-        "@id": "urn:3d2b1791-0c11-4d49-a9c6-abd1f5374040",
+        "@id": "urn:3bee4548-3d99-4d3b-8ecf-fe9fe26023a6",
         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:707144f1-53d3-42ec-ba6f-542f54333737",
+        "GeneratedBy": "urn:5532669b-e4be-439f-ad6c-7eaec203e36d",
         "digest": {
           "sha256": "b28c170e33d2917cac55183786616a9e976e5e7f30dc7c8666341f12ed6d0277"
         }
       },
       {
-        "@id": "urn:8b407455-a555-4fa6-bcda-746acc712cf2",
+        "@id": "urn:c8bd47b3-a87e-4881-adc1-63175661aaa7",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:707144f1-53d3-42ec-ba6f-542f54333737",
+        "GeneratedBy": "urn:5532669b-e4be-439f-ad6c-7eaec203e36d",
         "digest": {
           "sha256": "bf3b603569da6dbe3d6f0e8667d346f3ac943c9d01d2fc9743ce17abeb1547fb"
         }
       },
       {
-        "@id": "urn:8552e2e6-e17e-4c59-a484-215e804f9bc9",
+        "@id": "urn:68d31ef2-236f-48f3-a4db-d45f22bfcc43",
         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1378,7 +1378,7 @@
         }
       },
       {
-        "@id": "urn:3c0180cc-d6d3-4ccc-8f38-fe8174ca9257",
+        "@id": "urn:31d0fef0-41a4-4f4c-b800-6e08386d1bfd",
         "Label": "cope2",
         "AtLocation": "stats/cope2",
         "digest": {
@@ -1386,25 +1386,25 @@
         }
       },
       {
-        "@id": "urn:56bfa84e-6649-4581-80e0-37102dd5b138",
+        "@id": "urn:36658aad-0153-4170-8fe1-747d75a6cc5b",
         "Label": "cluster_mask_zstat2",
         "AtLocation": "cluster_mask_zstat2",
-        "GeneratedBy": "urn:c2144b4f-8b0f-4584-863a-cb9f06b98711",
+        "GeneratedBy": "urn:4a346665-2f68-41f7-ad09-0c4d8f65ca4f",
         "digest": {
           "sha256": "b88bb3cd4d809827a5c0a45cb4f6aac570cb25b7e056d5986d81d879548da121"
         }
       },
       {
-        "@id": "urn:9c267539-9f5e-4c6a-820b-652610506db1",
+        "@id": "urn:5d66c68e-3383-423b-a9a7-bc6dd08e0d21",
         "Label": "cope2",
         "AtLocation": "stats/cope2",
-        "GeneratedBy": "urn:c2144b4f-8b0f-4584-863a-cb9f06b98711",
+        "GeneratedBy": "urn:4a346665-2f68-41f7-ad09-0c4d8f65ca4f",
         "digest": {
           "sha256": "5f073baabd78c1c473fed55b511738f0ffe30d9fc1f23352a16ec058daacd88c"
         }
       },
       {
-        "@id": "urn:67375711-0a1c-4a22-8890-066992754f34",
+        "@id": "urn:208eefab-d051-4765-bff4-67f1743005b2",
         "Label": "cluster_zstat2",
         "AtLocation": "cluster_zstat2",
         "digest": {
@@ -1412,25 +1412,25 @@
         }
       },
       {
-        "@id": "urn:2c6ed95e-eb33-4067-b5f8-cc3f3a766674",
+        "@id": "urn:5bbc1c18-26eb-4371-a51f-6060dc8d9342",
         "Label": "rendered_thresh_zstat1",
         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:5e822140-db59-4c75-9aa9-366cb3b7ce0b",
+        "GeneratedBy": "urn:a5942aa8-a74c-4c93-8ab1-1005a19f6693",
         "digest": {
           "sha256": "de5b9d44d95f4252f491eb45c76a0ae2b4d2c75b58664fc0df7d9153810c0bf6"
         }
       },
       {
-        "@id": "urn:00f3a18e-2b92-41d7-9916-5c12aee8b210",
+        "@id": "urn:08254780-9d70-4efc-8615-576ba6205e13",
         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
-        "GeneratedBy": "urn:f82eb87b-862d-408e-b96c-a142427057ff",
+        "GeneratedBy": "urn:792ea18a-543c-4720-bb39-266ed3d5a6f2",
         "digest": {
           "sha256": "15d6a8bf7a902df8c5feeb7468a3d0caacf9eb3067c0840c2f4763f5e2301527"
         }
       },
       {
-        "@id": "urn:f5ff2181-2e0f-41da-93d1-7d37e905c7d1",
+        "@id": "urn:b344a607-bd81-4876-9108-440c30497751",
         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1438,46 +1438,46 @@
         }
       },
       {
-        "@id": "urn:99a72a05-324e-47a9-a72f-17d952a1b355",
+        "@id": "urn:497d8112-4d30-4d69-8445-f21e9299b37d",
         "Label": ".ramp.gif",
         "AtLocation": ".ramp.gif",
-        "GeneratedBy": "urn:23222b56-9dab-492e-a52d-bc03428a978d",
+        "GeneratedBy": "urn:2e21b4e4-5935-4855-8b93-dd5e88819342",
         "digest": {
           "sha256": "93f4284ccb854d5a41401d9360a13223017b67479cb289a33d83836922e028a4"
         }
       },
       {
-        "@id": "urn:cbd8f7a7-e0a6-4c73-84e3-22dd6e13c348",
+        "@id": "urn:c57808d3-5546-4118-b7fc-b778b5d26e99",
         "Label": "rendered_thresh_zstat2",
         "AtLocation": "rendered_thresh_zstat2",
-        "GeneratedBy": "urn:17aaefab-df5e-46d1-b244-9cd0910ac1f3",
+        "GeneratedBy": "urn:8c4fb7bc-b852-4995-9c0d-f57f3bc4ff9d",
         "digest": {
           "sha256": "b988cb8ba2b862b6fa88f223fcd3279c70e2ea217477bd1ec664c023be079cad"
         }
       },
       {
-        "@id": "urn:820e1ce0-2ab6-4f10-b95c-96faec0c975a",
+        "@id": "urn:e5d28661-d83f-4e8e-a350-8605712fa18e",
         "Label": "rendered_thresh_zstat2.png",
         "AtLocation": "rendered_thresh_zstat2.png",
-        "GeneratedBy": "urn:ad457a1a-305f-48e0-944c-307688941533",
+        "GeneratedBy": "urn:33ed22a7-1c99-4461-8c48-648b04cd652a",
         "digest": {
           "sha256": "0d60298d9eb509148075cbac8a22e6a95de919f17a069624fb42f86c29e1e199"
         }
       },
       {
-        "@id": "urn:73dc9b49-8e2c-44bc-a868-f4864e9d45bd",
+        "@id": "urn:ca0cc3f3-fdbf-434f-9653-c4ecd0da4c6b",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:8ffaad12-2674-47c2-b699-94f587264526",
+        "GeneratedBy": "urn:e1684662-ca16-489b-91c8-d1c156f0d690",
         "digest": {
           "sha256": "2a74042f4edf02288edf16961307f741651efb4346e102a04b7603e781d1625e"
         }
       },
       {
-        "@id": "urn:9631dcb3-1dd3-4164-9c1b-c5b05917345a",
+        "@id": "urn:c4a68c32-0925-45db-89b7-3831e4e76e01",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:43108f9f-e538-4064-bc43-7b0bbec78ff2",
+        "GeneratedBy": "urn:9961f831-35e9-477b-8d1f-3b47d84871b1",
         "digest": {
           "sha256": "2a74042f4edf02288edf16961307f741651efb4346e102a04b7603e781d1625e"
         }
diff --git a/examples/from_parsers/fsl/fsl_group_btw_report_log.jsonld b/examples/from_parsers/fsl/fsl_group_btw_report_log.jsonld
index 811932b7a..91d029036 100644
--- a/examples/from_parsers/fsl/fsl_group_btw_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_group_btw_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:5d377cc5-43ba-4030-91de-b34c5c5d5523",
+        "@id": "urn:cd61fdbd-13e5-4d2a-a477-0490ac58a3e6",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,429 +13,428 @@
     ],
     "Activities": [
       {
-        "@id": "urn:99bcea95-afc5-45e7-88a1-4cbbc4a5fe50",
+        "@id": "urn:cd713e3c-37f1-4250-99e4-76f14e82c809",
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-          "urn:213f0f36-c90c-4cbe-b10e-70ad5f3efd7d"
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         "Command": "printf '1 ' >> design.lcon",
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@@ -469,52 +468,52 @@
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@@ -522,16 +521,16 @@
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         "AtLocation": "/home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-02.feat/reg_standard/mask",
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@@ -539,16 +538,16 @@
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-        "GeneratedBy": "urn:e78802d6-1bb2-429f-bd2e-590f9ca87a83",
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@@ -556,16 +555,16 @@
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@@ -573,16 +572,16 @@
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@@ -590,16 +589,16 @@
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@@ -607,16 +606,16 @@
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@@ -624,16 +623,16 @@
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@@ -641,16 +640,16 @@
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@@ -658,16 +657,16 @@
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@@ -675,16 +674,16 @@
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@@ -692,16 +691,16 @@
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@@ -709,16 +708,16 @@
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@@ -743,43 +742,43 @@
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@@ -787,16 +786,16 @@
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@@ -804,16 +803,16 @@
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@@ -821,16 +820,16 @@
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@@ -838,16 +837,16 @@
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@@ -855,10 +854,10 @@
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diff --git a/examples/from_parsers/fsl/fsl_group_ols_report_log.jsonld b/examples/from_parsers/fsl/fsl_group_ols_report_log.jsonld
index ff0e8021e..6ed4bb84b 100644
--- a/examples/from_parsers/fsl/fsl_group_ols_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_group_ols_report_log.jsonld
@@ -4,7 +4,7 @@
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-          "urn:245ce441-cd96-4dc1-86cd-0a1e2723db8c"
+          "urn:00018e45-1170-4456-abbd-a12eee652582",
+          "urn:67db15ca-b473-4920-934a-2c3c04e4217b"
         ]
       },
       {
-        "@id": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
+        "@id": "urn:e2e35562-610f-4238-bbea-f339229b4f33",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-13.feat/reg_standard/mask -mul -1 -add 1 -mul 13 -add maskunique maskunique",
         "Used": [
-          "urn:944ad4a8-6abe-44bb-835f-307b53b5e187",
-          "urn:fa8342fe-9330-4fbe-8c69-740405630269"
+          "urn:67db15ca-b473-4920-934a-2c3c04e4217b",
+          "urn:dd4cd79c-c8c5-4f25-b7fd-0fe1731c5694"
         ]
       },
       {
-        "@id": "urn:8b0df28d-d3ef-4a15-9789-745572110d2a",
+        "@id": "urn:457d391d-f8af-4766-94cd-9b534bda02f2",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-14.feat/reg_standard/mask -mul -1 -add 1 -mul 14 -add maskunique maskunique",
         "Used": [
-          "urn:944ad4a8-6abe-44bb-835f-307b53b5e187",
-          "urn:efbf63f3-1453-44d7-943f-5ad271b15594"
+          "urn:67db15ca-b473-4920-934a-2c3c04e4217b",
+          "urn:8c63d766-0025-433f-8212-0ecaa555a1c2"
         ]
       },
       {
-        "@id": "urn:9c1ff056-0888-4199-b1a4-4c11252dcc8f",
+        "@id": "urn:5bb8508a-eda5-4365-81fb-999ffd24853e",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths masksum -thr 13 -uthr 13 -bin -mul maskunique maskunique",
         "Used": [
-          "urn:944ad4a8-6abe-44bb-835f-307b53b5e187",
-          "urn:d3e9b075-7f99-4789-a358-bfc920fed3c3"
+          "urn:4754665a-16eb-480f-bfcd-88b9d170d65a",
+          "urn:67db15ca-b473-4920-934a-2c3c04e4217b"
         ]
       },
       {
-        "@id": "urn:714cd3ec-0190-4792-93f3-8c566734b8a4",
+        "@id": "urn:4830f327-2309-4954-8099-23d6077d7c00",
         "Label": "overlay",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/overlay 0 0 ../bg_image -a maskunique 0.9 14 maskunique_overlay",
         "Used": []
       },
       {
-        "@id": "urn:9dce6e79-71ef-43e8-997d-4841605ad7c3",
+        "@id": "urn:375c91f6-f7c7-4879-8f95-2a01b4bf1ac9",
         "Label": "slicer",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer maskunique_overlay -S 2 750 maskunique_overlay.png",
         "Used": [
-          "urn:c66ec06e-eab2-4719-91c5-e81f8f54c33f"
+          "urn:c4c118f0-ce74-41f3-910b-79f9f4d747eb"
         ]
       },
       {
-        "@id": "urn:67c1a9ac-c5ad-4a62-9f8c-1bc385fbd286",
+        "@id": "urn:5703fe98-7035-4267-bfc4-7fb711d4a477",
         "Label": "cp",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/bin/cp /usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif .ramp.gif",
         "Used": [
-          "urn:3fd6b10a-ad16-41ce-987c-d9b67e25d95e"
+          "urn:99fdddd9-cb59-44fc-a275-ee3393b74160"
         ]
       },
       {
-        "@id": "urn:9f72ed22-2e83-4615-b7d0-34dd51fb3a97",
+        "@id": "urn:f8b35d61-6b39-4d1e-b9e8-e8a0f7c1bf73",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths mask -Tmin mask",
         "Used": [
-          "urn:0134c831-73b9-47b6-80a6-41535abaf825"
+          "urn:606954f3-07c0-44bf-8837-500c331578fd"
         ]
       },
       {
-        "@id": "urn:e648781f-7a62-4523-8c8c-24cc9bfea61a",
+        "@id": "urn:f95a770c-8509-4d92-9064-08ba635398ef",
         "Label": "fslmerge",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmerge -t mean_func  /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-01.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-02.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-03.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-04.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-05.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-06.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-07.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-08.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-09.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-10.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-11.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-12.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-13.feat/reg_standard/mean_func /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-14.feat/reg_standard/mean_func",
         "Used": []
       },
       {
-        "@id": "urn:086568a2-e38c-44a5-ac87-7bbb46fb1215",
+        "@id": "urn:d3e40457-38d8-4822-829c-5c631ed80f9c",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths mean_func -Tmean mean_func",
         "Used": [
-          "urn:76f8224d-55bf-46a5-bc7f-2973c300c08f"
+          "urn:d99020da-414e-4667-b1f4-695e3c5c3f4b"
         ]
       },
       {
-        "@id": "urn:9f26b129-9763-4b04-860e-3f44465c99ad",
+        "@id": "urn:a973b518-dde1-42af-b412-150d172947cb",
         "Label": "fslmerge",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmerge -t cope1  /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-01.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-02.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-03.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-04.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-05.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-06.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-07.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-08.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-09.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-10.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-11.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-12.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-13.feat/reg_standard/stats/cope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-14.feat/reg_standard/stats/cope1",
         "Used": []
       },
       {
-        "@id": "urn:b5d49317-69e9-4232-b911-58eab6897675",
+        "@id": "urn:308fe337-072b-4704-8cdd-117d8eea1928",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths cope1 -mas mask cope1",
         "Used": [
-          "urn:0134c831-73b9-47b6-80a6-41535abaf825",
-          "urn:e10b80dc-2736-45e6-b5cb-3754b829f806"
+          "urn:606954f3-07c0-44bf-8837-500c331578fd",
+          "urn:fea2ae1d-c64b-48ab-8876-37daa64c5c6f"
         ]
       },
       {
-        "@id": "urn:1d1b3389-23b1-48cb-9e01-94d17230ada3",
+        "@id": "urn:130b200a-a004-4ac6-917b-fae4be88252d",
         "Label": "printf",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "printf '1.01544485714 ' >> design.lcon",
         "Used": []
       },
       {
-        "@id": "urn:acc7bdb5-8fac-4151-8026-d741958f047d",
+        "@id": "urn:b7d21574-2f03-409f-b7d5-363bb4297b36",
         "Label": "fslmerge",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmerge -t varcope1  /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-01.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-02.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-03.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-04.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-05.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-06.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-07.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-08.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-09.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-10.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-11.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-12.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-13.feat/reg_standard/stats/varcope1 /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-14.feat/reg_standard/stats/varcope1",
         "Used": []
       },
       {
-        "@id": "urn:5a59dd20-8346-4538-8661-9396d02224d7",
+        "@id": "urn:33d94269-b0ee-4b88-b5fc-dd8b5f68ea2d",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths varcope1 -mas mask varcope1",
         "Used": [
-          "urn:0134c831-73b9-47b6-80a6-41535abaf825",
-          "urn:f33a292b-a905-408f-ba76-441a2058a27b"
+          "urn:606954f3-07c0-44bf-8837-500c331578fd",
+          "urn:ae7558b3-c12b-4858-b7d2-b1fd79149b23"
         ]
       },
       {
-        "@id": "urn:95b6a627-a7cb-4607-b603-d359f8b3c75c",
+        "@id": "urn:0cc0ab94-4f84-4683-baea-d3e0d4183a7a",
         "Label": "printf",
-        "AssociatedWith": "urn:68638674-b35e-4ee2-ac81-93b0eed1dc4a",
+        "AssociatedWith": "urn:c15521b1-b3dc-450a-9daa-37e51b591d75",
         "Command": "printf '1 ' >> design.lcon",
         "Used": []
       }
     ],
     "Entities": [
       {
-        "@id": "urn:ae29f890-cf49-4621-9cbe-6eeeab313c8e",
+        "@id": "urn:942af46d-1c8d-4358-a2db-0c01afd798c2",
         "Label": "bg_image",
         "AtLocation": "bg_image",
         "digest": {
@@ -443,25 +442,25 @@
         }
       },
       {
-        "@id": "urn:b9dd4585-53b2-46d3-86ef-605a4028c435",
+        "@id": "urn:5d3ffd11-a23c-4698-a32d-c48296ce3859",
         "Label": "bg_image",
         "AtLocation": "bg_image",
-        "GeneratedBy": "urn:cfaa20a5-21e5-49c6-bfed-2d23065164c6",
+        "GeneratedBy": "urn:a40f9ca3-df62-492c-982a-3add9b872a76",
         "digest": {
           "sha256": "ee2ea46067dbf68f9438c2eca02baa42dc59c8f171830150d0621ae3e061d7d0"
         }
       },
       {
-        "@id": "urn:cf18c935-d808-4855-94c8-ab1e8af5e711",
+        "@id": "urn:9fc62455-73dd-4732-8555-2a83319f69e3",
         "Label": "inputreg",
         "AtLocation": "inputreg",
-        "GeneratedBy": "urn:fad38cb7-5e1a-4f82-ac2d-4f0cc81b0b2a",
+        "GeneratedBy": "urn:ac189004-8387-4e75-bc93-a36cdff27e9f",
         "digest": {
           "sha256": "d820f84544e66c638eb5c8e71e84a56b0a45e35a1b508ff270c8e01746985c3f"
         }
       },
       {
-        "@id": "urn:972af39b-8673-4ab8-a38f-f2424bc248af",
+        "@id": "urn:1f05f4d1-1a38-4927-812e-cd08801f772d",
         "Label": "mask",
         "AtLocation": "../mask",
         "digest": {
@@ -469,52 +468,52 @@
         }
       },
       {
-        "@id": "urn:d3e9b075-7f99-4789-a358-bfc920fed3c3",
+        "@id": "urn:4754665a-16eb-480f-bfcd-88b9d170d65a",
         "Label": "masksum",
         "AtLocation": "masksum",
-        "GeneratedBy": "urn:4ece4936-b75e-4cdf-a4fa-c1748c3364db",
+        "GeneratedBy": "urn:4804ef24-cc59-44d0-bc17-d84637db2982",
         "digest": {
           "sha256": "11b44d8f49c65d763a7e80d2a07bc61d6269bc71dc9ea9f77bfe5f7795d4a58c"
         }
       },
       {
-        "@id": "urn:b25b166c-87b5-473b-a60f-ad6c25f3622e",
+        "@id": "urn:2b1a7ae1-af74-4c55-b949-3d417afdf260",
         "Label": "masksum",
         "AtLocation": "masksum",
-        "GeneratedBy": "urn:eefeb4b9-0344-4121-aee1-626e816354fc",
+        "GeneratedBy": "urn:29663157-072a-468b-9e47-921f47d9e875",
         "digest": {
           "sha256": "11b44d8f49c65d763a7e80d2a07bc61d6269bc71dc9ea9f77bfe5f7795d4a58c"
         }
       },
       {
-        "@id": "urn:1435c1bd-2e36-477a-b417-5f57093bedde",
+        "@id": "urn:6aedf88b-6fe2-45d4-b5b7-28bf7c208071",
         "Label": "masksum_overlay",
         "AtLocation": "masksum_overlay",
-        "GeneratedBy": "urn:22ef0778-033a-4fc5-871a-2d082718833a",
+        "GeneratedBy": "urn:4f3d0144-7485-4165-a2fe-005b88ebf5e6",
         "digest": {
           "sha256": "9f347d6ec7a789bf400954fc9f6576becdbfaae343b6e778e729bb02400c3e18"
         }
       },
       {
-        "@id": "urn:25ae9bf9-095e-447e-a614-2c4608c5a78a",
+        "@id": "urn:7d32da7c-f063-4104-9d88-ae97dd8e5608",
         "Label": "masksum_overlay.png",
         "AtLocation": "masksum_overlay.png",
-        "GeneratedBy": "urn:8a3f7a24-c685-4532-be83-851ae63ca6ad",
+        "GeneratedBy": "urn:41a204e9-1848-4df7-93a1-c30b986f3042",
         "digest": {
           "sha256": "cb87f6a075a6829b613c60ea6ed47ebd80fdb95356d0f783cf182255469425cb"
         }
       },
       {
-        "@id": "urn:944ad4a8-6abe-44bb-835f-307b53b5e187",
+        "@id": "urn:67db15ca-b473-4920-934a-2c3c04e4217b",
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+        "GeneratedBy": "urn:33d94269-b0ee-4b88-b5fc-dd8b5f68ea2d",
         "digest": {
           "sha256": "06459b075612b55044b7e494206fcec5dbe73b1f5f8a13439d720705495ae2ee"
         }
diff --git a/examples/from_parsers/fsl/fsl_group_wls_report_log.jsonld b/examples/from_parsers/fsl/fsl_group_wls_report_log.jsonld
index 54140d4e6..019e8ef6d 100644
--- a/examples/from_parsers/fsl/fsl_group_wls_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_group_wls_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "@id": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,429 +13,428 @@
     ],
     "Activities": [
       {
-        "@id": "urn:63dc7fcd-c329-451f-b756-ffb7402f2c0f",
+        "@id": "urn:ee05cd16-9e60-45d8-9454-736cb892f197",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-01.feat",
         "Used": []
       },
       {
-        "@id": "urn:5b3f547f-4ee6-41a1-b28f-935e8c1fdacf",
+        "@id": "urn:ca9a4718-ff12-4c49-bc9b-c8e5d0c67304",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-02.feat",
         "Used": []
       },
       {
-        "@id": "urn:8a4a9ff9-1d14-470a-8bd4-1d72ba71ad58",
+        "@id": "urn:406533ba-f5f6-475d-b834-784305e689ce",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-03.feat",
         "Used": []
       },
       {
-        "@id": "urn:995f49ae-4942-4e6f-83d6-c538a506a7c1",
+        "@id": "urn:da0a1900-b8f3-4fff-85b1-b9f700cefdff",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-04.feat",
         "Used": []
       },
       {
-        "@id": "urn:2d5e64f3-453a-4325-8af6-c3fa3066aff9",
+        "@id": "urn:794883bf-d745-44bf-880c-8341377bd9ec",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-05.feat",
         "Used": []
       },
       {
-        "@id": "urn:b9bff359-7ed3-42e2-b4c9-c0643d112ddb",
+        "@id": "urn:2ec46422-3d77-4635-82fc-107101bfe479",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-06.feat",
         "Used": []
       },
       {
-        "@id": "urn:218cfda2-6551-46ae-b33b-98a6bcb9c3c2",
+        "@id": "urn:f8728d5a-b3f1-4f75-b4cd-73ed82ad1764",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-07.feat",
         "Used": []
       },
       {
-        "@id": "urn:afd8fd7e-3ef8-4c37-85cf-c087a46b6b6a",
+        "@id": "urn:2cf39d2b-1f46-4df9-9f1f-0ee01340ad6d",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-08.feat",
         "Used": []
       },
       {
-        "@id": "urn:adc60b45-337e-4906-beba-71d2ddc16d4e",
+        "@id": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-09.feat",
         "Used": []
       },
       {
-        "@id": "urn:3f3adb46-2c8c-4af3-9b74-3b228f01bc25",
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         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-10.feat",
         "Used": []
       },
       {
-        "@id": "urn:9adc828f-dd51-4ab2-a508-c1d09ce05298",
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         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-11.feat",
         "Used": []
       },
       {
-        "@id": "urn:0c9384d2-5ea5-411b-9fe3-3d83ebaa506b",
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         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-12.feat",
         "Used": []
       },
       {
-        "@id": "urn:be84928c-d8ae-4338-bcf4-1ccc2ac748a9",
+        "@id": "urn:0105302f-6dee-4f56-b390-8f4c7b70f68b",
         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-13.feat",
         "Used": []
       },
       {
-        "@id": "urn:80ead96e-5334-44ca-a43c-763052f7e42d",
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         "Label": "featregapply",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/featregapply /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-14.feat",
         "Used": []
       },
       {
-        "@id": "urn:0a29010b-055a-4c9f-a691-467dd9a6592e",
+        "@id": "urn:73ac48b8-1ba7-42d9-b8a3-86ad316270d6",
         "Label": "fslmerge",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmerge -t bg_image  /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-01.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-02.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-03.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-04.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-05.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-06.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-07.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-08.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-09.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-10.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-11.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-12.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-13.feat/reg_standard/reg/highres /home/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/LEVEL1/sub-14.feat/reg_standard/reg/highres",
         "Used": []
       },
       {
-        "@id": "urn:86d21eba-6ad9-444c-80da-f578ccd1e710",
+        "@id": "urn:482a00bc-4f3f-4866-adff-1ca4914f0f9c",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
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         "Used": [
-          "urn:b9b34fc0-689e-4f12-b23e-3a571f9bf148"
+          "urn:82368305-14a5-444d-9f57-a96589e51937"
         ]
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-        "@id": "urn:36febdec-c791-4426-8358-dc364642e701",
+        "@id": "urn:6facd168-6205-4eab-902a-051b05e0d300",
         "Label": "fslmerge",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
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         "Used": []
       },
       {
-        "@id": "urn:a01d75ac-c17f-4f91-9f22-81e6b3027a66",
+        "@id": "urn:7eeace10-a018-45b9-b882-514a0a878de0",
         "Label": "Make directory",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "mkdir -p inputreg",
         "Used": []
       },
       {
-        "@id": "urn:26b6c813-093d-4fba-acee-cb681fa1af8b",
+        "@id": "urn:0840ffaf-344d-4b50-b9b5-1a4dd76fe080",
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-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
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         "Used": [
-          "urn:5486b654-d90b-4287-aebc-049b6ba00b19"
+          "urn:bf820444-ae9b-4433-98a7-a11014b56ea1"
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-        "@id": "urn:e461db18-e9c3-4b8d-b479-84c6dada49e4",
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
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         "Used": [
-          "urn:b6fca15c-5471-47cc-ba03-e1d67135b3a7",
-          "urn:b6fca15c-5471-47cc-ba03-e1d67135b3a7"
+          "urn:d227a590-b746-4e62-a756-06959e2f290e"
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-        "@id": "urn:595e9e51-3851-44c5-ad4b-dbe50c2cba15",
+        "@id": "urn:65ac2267-948b-4892-afd1-d931dd616401",
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-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/overlay 0 0 -c ../bg_image -a masksum 0.9 28 masksum_overlay",
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+        "@id": "urn:db70a010-5f90-48af-8c31-6be63a2c5d14",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer masksum_overlay -S 2 750 masksum_overlay.png",
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+          "urn:df70a01a-6213-44d8-b679-676dd6bfb129"
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         "Label": "fslmaths",
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+        "AssociatedWith": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths masksum -mul 0 maskunique",
         "Used": [
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+          "urn:d227a590-b746-4e62-a756-06959e2f290e"
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         "Used": [
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:6f0b04f1-78e2-477b-8c97-91ac8fcaece8",
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@@ -522,16 +521,16 @@
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@@ -539,16 +538,16 @@
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@@ -556,16 +555,16 @@
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@@ -573,16 +572,16 @@
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@@ -590,16 +589,16 @@
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@@ -607,16 +606,16 @@
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@@ -624,16 +623,16 @@
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@@ -641,16 +640,16 @@
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@@ -658,16 +657,16 @@
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@@ -743,43 +742,43 @@
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@@ -787,16 +786,16 @@
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@@ -804,16 +803,16 @@
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@@ -821,16 +820,16 @@
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@@ -838,16 +837,16 @@
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@@ -855,10 +854,10 @@
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diff --git a/examples/from_parsers/fsl/fsl_hrf_fir_report_log.jsonld b/examples/from_parsers/fsl/fsl_hrf_fir_report_log.jsonld
index b8e6ad0aa..e6dff0097 100644
--- a/examples/from_parsers/fsl/fsl_hrf_fir_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_hrf_fir_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "@id": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
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@@ -13,743 +13,743 @@
     ],
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+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
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         "Used": [
-          "urn:5bce27f0-f599-4ab0-bf68-2d0e37a96f74"
+          "urn:e4549dc8-e7dc-4d2d-a4fc-5aef29e6af69"
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         "Used": [
-          "urn:25f83831-8237-4bcf-a95d-c1c43b678e9a"
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         "Used": [
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         "Used": [
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+          "urn:b8d7c546-8d76-4977-902e-54a5f98165f9"
         ]
       },
       {
-        "@id": "urn:ed331241-db7d-4bc0-8c44-35d1d4d65364",
+        "@id": "urn:2e5ce908-c114-456f-a59e-06957d7f777e",
         "Label": "pngappend",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png example_func2highres1.png",
         "Used": [
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-          "urn:90161d09-6f0c-46e4-9d1c-a16798b445cf"
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+          "urn:39022742-83e8-4de3-85de-35824e023294",
+          "urn:403c944c-e137-48ae-a96a-5bee552c4e45",
+          "urn:640954dc-d4ca-4c56-90d3-79b557b615c6",
+          "urn:85d40ec9-6104-4d35-a712-f30b1e91c0bc",
+          "urn:99b48746-909d-452d-bf6b-24a0e1ebf9c5",
+          "urn:b2fe76ce-e994-4c27-95fb-efa9e1b13e2a",
+          "urn:b5ed0dcb-6f8b-4f0b-972e-0d08e249d112",
+          "urn:bf004824-b637-4840-942f-369d36e3837e"
         ]
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       {
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+        "@id": "urn:b361905e-407f-4981-8e58-3208f23a069a",
         "Label": "slicer",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
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-          "urn:7989ed26-c111-4c65-a7f2-c118f1201bff"
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       {
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         "Label": "pngappend",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png example_func2highres2.png",
         "Used": [
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-          "urn:90161d09-6f0c-46e4-9d1c-a16798b445cf"
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+          "urn:403c944c-e137-48ae-a96a-5bee552c4e45",
+          "urn:640954dc-d4ca-4c56-90d3-79b557b615c6",
+          "urn:85d40ec9-6104-4d35-a712-f30b1e91c0bc",
+          "urn:99b48746-909d-452d-bf6b-24a0e1ebf9c5",
+          "urn:b2fe76ce-e994-4c27-95fb-efa9e1b13e2a",
+          "urn:b5ed0dcb-6f8b-4f0b-972e-0d08e249d112",
+          "urn:bf004824-b637-4840-942f-369d36e3837e"
         ]
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       {
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         "Label": "pngappend",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend example_func2highres1.png example_func2highres2.png example_func2highres.png",
         "Used": [
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-          "urn:52b1e261-fec0-4e34-a356-90ad7d4e1234"
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       },
       {
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         "Label": "rm",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
         "Used": [
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-          "urn:52b1e261-fec0-4e34-a356-90ad7d4e1234"
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         ]
       },
       {
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         "Label": "rm",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
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+          "urn:127a38fe-34a4-4248-9396-9b5106b4bca0"
         ]
       },
       {
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+        "@id": "urn:94d83b6c-0071-40c5-b3ad-9687a6570107",
         "Label": "mcflirt",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -reffile example_func -rmsrel -rmsabs -spline_final",
         "Used": [
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+          "urn:dda7883b-7b5a-4449-bac3-ffcbe0ef3bf2"
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       },
       {
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+        "@id": "urn:736f8ab3-cae1-4022-9c97-ba8843782a36",
         "Label": "Make directory",
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+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/bin/mkdir -p mc",
         "Used": []
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       {
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         "Label": "mv",
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+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc",
         "Used": [
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-          "urn:ab3c4e2c-eac4-499d-83f7-ac40b11b2893"
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       {
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+        "@id": "urn:230eecc7-aae1-43d0-af4a-f49dd70b07b1",
         "Label": "fsl_tsplot",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png",
         "Used": [
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+          "urn:95dd9372-af2f-48c2-9239-2fa721e54fa1"
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       {
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         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png",
         "Used": [
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+          "urn:95dd9372-af2f-48c2-9239-2fa721e54fa1"
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         "Label": "fsl_tsplot",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png",
         "Used": [
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths prefiltered_func_data_mcf -Tmean mean_func",
         "Used": [
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         "Label": "fslmaths",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths prefiltered_func_data_mcf -mas mask prefiltered_func_data_bet",
         "Used": [
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-          "urn:6110816b-7ef2-4df2-9454-12e5e7d9f8f3"
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         "Label": "fslstats",
-        "AssociatedWith": "urn:6bed399a-edb1-4db3-b058-05dc76a2f315",
+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslstats prefiltered_func_data_bet -p 2 -p 98",
         "Used": [
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+          "urn:eb164190-0156-408a-8695-eabc2105da90"
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths prefiltered_func_data_bet -thr 74.4585571 -Tmin -bin mask -odt char",
         "Used": [
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+          "urn:eb164190-0156-408a-8695-eabc2105da90"
         ]
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         "Label": "fslstats",
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+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslstats prefiltered_func_data_mcf -k mask -p 50",
         "Used": [
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+          "urn:543ec73e-7a7b-4f1c-b0f2-5e4faa4a024a"
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         "Label": "fslmaths",
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+        "AssociatedWith": "urn:b889cc5f-d33a-4375-9707-5241f6701604",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths mask -dilF mask",
         "Used": [
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@@ -757,25 +757,25 @@
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@@ -783,7 +783,7 @@
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@@ -799,31 +799,31 @@
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@@ -831,13 +831,13 @@
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@@ -845,16 +845,16 @@
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@@ -862,250 +862,250 @@
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@@ -1113,25 +1113,25 @@
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@@ -1139,7 +1139,7 @@
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@@ -1147,7 +1147,7 @@
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@@ -1155,7 +1155,7 @@
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@@ -1163,7 +1163,7 @@
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@@ -1171,7 +1171,7 @@
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@@ -1179,34 +1179,34 @@
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@@ -1214,34 +1214,34 @@
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@@ -1249,106 +1249,106 @@
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@@ -1356,25 +1356,25 @@
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@@ -1382,16 +1382,16 @@
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@@ -1399,22 +1399,22 @@
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@@ -1422,13 +1422,13 @@
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@@ -1436,16 +1436,16 @@
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@@ -1453,16 +1453,16 @@
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@@ -1470,16 +1470,16 @@
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       {
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+        "GeneratedBy": "urn:44183f80-97dc-4bbb-be0f-10eedc9caec1",
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@@ -1487,16 +1487,16 @@
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@@ -1504,16 +1504,16 @@
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@@ -1521,25 +1521,25 @@
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@@ -1547,7 +1547,7 @@
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@@ -1555,25 +1555,25 @@
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         "AtLocation": "stats/cope2",
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@@ -1581,7 +1581,7 @@
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@@ -1589,25 +1589,25 @@
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         "digest": {
@@ -1615,16 +1615,16 @@
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@@ -1632,25 +1632,25 @@
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         "digest": {
@@ -1658,82 +1658,82 @@
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       {
-        "@id": "urn:14467495-b476-4aaf-a69f-83d5a7aef290",
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diff --git a/examples/from_parsers/fsl/fsl_hrf_gammadiff_report_log.jsonld b/examples/from_parsers/fsl/fsl_hrf_gammadiff_report_log.jsonld
index 06dc84430..3a6deaaa1 100644
--- a/examples/from_parsers/fsl/fsl_hrf_gammadiff_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_hrf_gammadiff_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
+        "@id": "urn:4a757610-bffc-4f8b-86e5-cc5fb837b4cd",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,540 +13,540 @@
     ],
     "Activities": [
       {
-        "@id": "urn:95ccaf05-817e-4a81-834c-2318041fff1c",
+        "@id": "urn:7567208c-e138-45bd-92fd-e04cbbbe5798",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
+        "AssociatedWith": "urn:4a757610-bffc-4f8b-86e5-cc5fb837b4cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:6881a5cc-9595-41df-aa57-9282e12aff08"
+          "urn:5f833946-20fb-421f-bad6-7314076eefc9"
         ]
       },
       {
-        "@id": "urn:905ff829-f251-4ceb-a3a9-68cfc3bca833",
+        "@id": "urn:664b43fb-669a-401f-ae8b-84fe61d94430",
         "Label": "fslroi",
-        "AssociatedWith": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
+        "AssociatedWith": "urn:4a757610-bffc-4f8b-86e5-cc5fb837b4cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:1fdbba0a-7cc5-4a61-a176-47060d3ec405"
+          "urn:f0341414-568b-486a-a4d1-510de6bfe1df"
         ]
       },
       {
-        "@id": "urn:2547b3a8-a472-485f-8c9d-286bf6141ad9",
+        "@id": "urn:b21e6503-bf58-4c64-af2c-a7dd75598c0b",
         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
+        "AssociatedWith": "urn:4a757610-bffc-4f8b-86e5-cc5fb837b4cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_double_gamma.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_double_gamma.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_double_gamma.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_double_gamma.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_double_gamma.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:5f30236b-7177-4396-8dc1-f5273c7647d9",
-          "urn:7f7e32bd-8c96-4db8-a1c2-6dce6a2dd739",
-          "urn:9e33b686-c0c9-443c-b09a-e260a466da80"
+          "urn:06bc5b94-8010-4257-9815-dade77c76107",
+          "urn:9fa885f9-9119-4a5a-a21f-c08970524468",
+          "urn:b85c808d-47e1-4a93-9a2a-5dfa71c1ef7f"
         ]
       },
       {
-        "@id": "urn:0190bd90-1ced-4bde-bb32-dc91ffd47ebf",
+        "@id": "urn:d53e0107-1254-40e5-86e7-d8d9c3e13410",
         "Label": "Make directory",
-        "AssociatedWith": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
+        "AssociatedWith": "urn:4a757610-bffc-4f8b-86e5-cc5fb837b4cd",
         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_double_gamma.feat/reg",
         "Used": []
       },
       {
-        "@id": "urn:32cbe895-a1a0-47d4-a58b-7ec37bc724b9",
+        "@id": "urn:5a684948-c866-433e-85cb-f5badd6af3ee",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:0aabb59a-ee81-4df8-8921-da60f4c7f23a",
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         "Used": [
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+          "urn:b85c808d-47e1-4a93-9a2a-5dfa71c1ef7f"
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       {
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         "Label": "fslmaths",
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         "Used": [
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+          "urn:e3ee0fd1-763c-4aa9-a09a-de1c91eadfac"
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         "Label": "epi_reg",
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+        "AssociatedWith": "urn:4a757610-bffc-4f8b-86e5-cc5fb837b4cd",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres",
         "Used": []
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       {
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         "Used": [
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+          "urn:b91a4495-095e-4698-850a-7413ec6cbcab"
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         "Used": [
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-          "urn:036f2b82-0e8d-46c3-bc57-1f2f0456e364"
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         "Label": "pngappend",
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         "Used": [
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+          "urn:9f0735c4-b92d-4170-8956-a61e7015f205",
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         "Label": "slicer",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
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-          "urn:d59b253f-3a7c-4189-a01e-63f44ed5706b"
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         "Label": "pngappend",
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         "Used": [
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-          "urn:0cc3f639-004a-4d2d-af86-b5c8d36f74bf"
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+          "urn:9f0735c4-b92d-4170-8956-a61e7015f205",
+          "urn:b68a203c-17bc-4181-9131-451583349b15",
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         "Label": "pngappend",
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         "Used": [
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-          "urn:44507117-d812-483e-8273-42bee72dae49"
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         "Label": "rm",
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         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
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         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
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+          "urn:2257b871-d997-456a-8ba3-63bf7a39192f"
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         "Label": "mcflirt",
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         "Used": [
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         "Label": "Make directory",
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         "Command": "/bin/mkdir -p mc",
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         "Label": "mv",
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Used": [
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Label": "fslmaths",
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         "Used": [
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         "Used": [
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         "Label": "cluster2html",
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@@ -910,25 +910,25 @@
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@@ -936,7 +936,7 @@
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@@ -944,7 +944,7 @@
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@@ -952,7 +952,7 @@
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@@ -960,7 +960,7 @@
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@@ -968,7 +968,7 @@
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@@ -976,34 +976,34 @@
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@@ -1011,34 +1011,34 @@
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@@ -1046,106 +1046,106 @@
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@@ -1153,25 +1153,25 @@
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         "Label": "prefiltered_func_data*",
         "AtLocation": "prefiltered_func_data*",
         "digest": {
@@ -1179,16 +1179,16 @@
         }
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
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@@ -1196,22 +1196,22 @@
         }
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1219,13 +1219,13 @@
         }
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       {
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         "AtLocation": "custom_timing_files/ev2.txt",
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@@ -1233,16 +1233,16 @@
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       {
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-        "GeneratedBy": "urn:aae97d91-c38d-4bad-a44f-266f2980278e",
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@@ -1250,16 +1250,16 @@
         }
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       {
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         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:57bc0d38-d4f9-45a4-b6f4-99a8cad449b0",
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         "AtLocation": "stats/cope1",
         "digest": {
@@ -1267,25 +1267,25 @@
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       {
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         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:655ab22b-c4d4-4588-8cec-545096d5cb2b",
+        "GeneratedBy": "urn:b236da14-0060-43c1-8ae8-a2ca27c4743a",
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       {
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+        "@id": "urn:4cc74bde-de10-4407-9512-a9c834be1ceb",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:655ab22b-c4d4-4588-8cec-545096d5cb2b",
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         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1293,25 +1293,25 @@
         }
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       {
-        "@id": "urn:f7b7e56c-dc14-4d84-aa56-ff1cfc542fb6",
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         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:31054834-2460-4ad5-bfa8-309f871874ae",
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       {
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         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
-        "GeneratedBy": "urn:632d059b-7317-409b-bc33-1129e0fb3384",
+        "GeneratedBy": "urn:0823c534-eb6d-474b-bb65-02c92e9c5d39",
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       {
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         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1319,28 +1319,28 @@
         }
       },
       {
-        "@id": "urn:1385d357-b02c-4183-9f77-4f8ca2ba5b4b",
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         "AtLocation": ".ramp.gif",
-        "GeneratedBy": "urn:5a94b1ea-6185-4724-82e8-6a994f8b40e5",
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         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:6e80e72d-c7a0-4545-9346-80e5b053c402",
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diff --git a/examples/from_parsers/fsl/fsl_motion_reg_der_report_log.jsonld b/examples/from_parsers/fsl/fsl_motion_reg_der_report_log.jsonld
index 7063c33d2..4de83d82a 100644
--- a/examples/from_parsers/fsl/fsl_motion_reg_der_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_motion_reg_der_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:7735b3ca-2f92-43b2-ae95-4ef18acc796b",
+        "@id": "urn:d7d8cb58-f077-4a44-9c83-d0cc455a5cf2",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,572 +13,572 @@
     ],
     "Activities": [
       {
-        "@id": "urn:f6eda669-13c2-412a-bad4-785ab23219d0",
+        "@id": "urn:9c952d4e-87cf-4ea6-b03c-4af969fd056b",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:7735b3ca-2f92-43b2-ae95-4ef18acc796b",
+        "AssociatedWith": "urn:d7d8cb58-f077-4a44-9c83-d0cc455a5cf2",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:91a99f75-a4b5-434e-b5fc-cd05fae1fad9"
+          "urn:b5f66e4e-2342-4065-8f7b-2c21b222d7b8"
         ]
       },
       {
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         "Label": "fslroi",
-        "AssociatedWith": "urn:7735b3ca-2f92-43b2-ae95-4ef18acc796b",
+        "AssociatedWith": "urn:d7d8cb58-f077-4a44-9c83-d0cc455a5cf2",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:d5fc324a-1aa6-4bb9-bf50-5348c8468ba1"
+          "urn:7cd6ecd7-6511-4f63-9962-952ebad0dcdb"
         ]
       },
       {
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+        "@id": "urn:678536c5-1572-466a-89e4-3051f34d7755",
         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:7735b3ca-2f92-43b2-ae95-4ef18acc796b",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg_der.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg_der.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg_der.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg_der.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg_der.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:81eb387a-a9f4-404a-89ac-8eb8bd0c328d",
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-          "urn:6ff085a4-dd4b-413a-9701-e9ae6a37032f"
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+        "@id": "urn:378c0ea8-a35a-472a-9347-ff979b23f462",
         "Label": "Make directory",
-        "AssociatedWith": "urn:7735b3ca-2f92-43b2-ae95-4ef18acc796b",
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         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg_der.feat/reg",
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       },
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         "Used": [
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+          "urn:333737b2-2884-489a-bd62-8411fc800020"
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         "Used": []
       },
       {
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         "Used": [
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+          "urn:6a09ed66-56d8-45c8-baab-c2417d274efe"
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+          "urn:4c7e0766-bcb2-4baa-b971-d4766f468d5c",
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         "Label": "pngappend",
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         "Used": [
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+          "urn:e2e50d8d-e0f5-4bfe-b596-ea2f70aa04b7",
+          "urn:fa7f30ff-7045-4e3d-8ce0-8e53e0806051"
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         "Label": "slicer",
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         "Label": "pngappend",
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         "Used": [
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         "Label": "pngappend",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend example_func2highres1.png example_func2highres2.png example_func2highres.png",
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-          "urn:f565cf28-54ed-4c08-ad1c-4c86fbd4209a"
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         "Label": "rm",
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+        "AssociatedWith": "urn:d7d8cb58-f077-4a44-9c83-d0cc455a5cf2",
         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
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         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
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+          "urn:ec4eff37-da73-479a-bf55-e1c024f86d2c"
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         "Label": "mcflirt",
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         "Used": [
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+          "urn:7cd6ecd7-6511-4f63-9962-952ebad0dcdb"
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         "Label": "Make directory",
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         "Command": "/bin/mkdir -p mc",
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         "Label": "mv",
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Label": "fsl_tsplot",
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         "Used": [
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-          "urn:96c4c10a-78de-41e9-819c-cee215f36d3c"
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@@ -942,25 +942,25 @@
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@@ -968,7 +968,7 @@
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@@ -976,7 +976,7 @@
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@@ -984,7 +984,7 @@
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@@ -992,7 +992,7 @@
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@@ -1000,7 +1000,7 @@
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@@ -1008,34 +1008,34 @@
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@@ -1043,34 +1043,34 @@
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@@ -1078,106 +1078,106 @@
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@@ -1185,25 +1185,25 @@
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@@ -1211,16 +1211,16 @@
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
         "digest": {
@@ -1228,22 +1228,22 @@
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         "AtLocation": "custom_timing_files/ev1.txt",
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-        "GeneratedBy": "urn:e02b2957-be9a-46ac-992e-79c7f1221e7f",
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1251,24 +1251,24 @@
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         "AtLocation": "mc/prefiltered_func_data_mcf_diff",
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@@ -1276,7 +1276,7 @@
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@@ -1284,16 +1284,16 @@
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         "AtLocation": "stats/smoothness",
-        "GeneratedBy": "urn:471eb02a-76b5-43eb-a695-480ae4927f76",
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@@ -1301,16 +1301,16 @@
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         "digest": {
@@ -1318,25 +1318,25 @@
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         "AtLocation": "cluster_mask_zstat1",
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         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:df8f4a65-c11b-411c-bb8e-a590238f5643",
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         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1344,25 +1344,25 @@
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       {
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         "AtLocation": "rendered_thresh_zstat1",
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         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
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         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1370,28 +1370,28 @@
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       {
-        "@id": "urn:35c3e5eb-f1d6-4b07-92f7-4e521839f173",
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         "AtLocation": ".ramp.gif",
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         "Label": "tsplot",
         "AtLocation": "tsplot",
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         "Label": "tsplot",
         "AtLocation": "tsplot",
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diff --git a/examples/from_parsers/fsl/fsl_motion_reg_report_log.jsonld b/examples/from_parsers/fsl/fsl_motion_reg_report_log.jsonld
index 63cac8e6b..e1002a725 100644
--- a/examples/from_parsers/fsl/fsl_motion_reg_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_motion_reg_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
+        "@id": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,565 +13,565 @@
     ],
     "Activities": [
       {
-        "@id": "urn:2865335c-14e3-4c09-91ec-1c2ce71c403a",
+        "@id": "urn:ac8b5b17-4954-4507-b9ff-cc76b89ef95b",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:8b8a94b6-8b6a-4ed3-a0f3-b6d878264dc4"
+          "urn:37f82981-5933-4f9e-9690-5aacde57b42e"
         ]
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-        "@id": "urn:127b8467-890e-43b5-bada-c2e7aad0f3b5",
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         "Label": "fslroi",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:5ff1801c-9116-43a9-aa4a-c72b55bfef4e"
+          "urn:e1d15475-ff8f-4283-85cf-e17fe947c022"
         ]
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       {
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         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:29a0b4f6-b17a-4d53-bd4a-e72f596a9372",
-          "urn:14523d74-cb30-454d-aa4c-0d3ec2b47bb5",
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+          "urn:04ed6b15-acd8-4153-bd79-745075ff58fb",
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+        "@id": "urn:5a0983f2-8f5b-4f8c-a9b9-1dd457e1bcea",
         "Label": "Make directory",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_motion_reg.feat/reg",
         "Used": []
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       {
-        "@id": "urn:0353b00f-1c6b-4552-88ff-c62d9cc398fb",
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         "Used": [
-          "urn:14523d74-cb30-454d-aa4c-0d3ec2b47bb5"
+          "urn:04ed6b15-acd8-4153-bd79-745075ff58fb"
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         "Used": [
-          "urn:ca2dcba4-32ec-4f2a-9b1f-10f032c69a51"
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+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres",
         "Used": []
       },
       {
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         "Label": "convert_xfm",
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         "Used": [
-          "urn:5eb20761-d530-43d3-94b9-5355fcf7f3d8"
+          "urn:2b9a4fd8-fd99-49a5-b619-58384b71b798"
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       },
       {
-        "@id": "urn:3caf99ff-86c7-4a3a-a51b-eead0a39284b",
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+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
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-          "urn:b71fd583-0674-4c89-a2f8-d444419c7562"
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         "Label": "pngappend",
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         "Used": [
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         "Label": "pngappend",
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         "Label": "pngappend",
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         "Label": "rm",
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         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
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         "Label": "rm",
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         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
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         "Label": "mcflirt",
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         "Used": [
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         "Label": "Make directory",
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         "Command": "/bin/mkdir -p mc",
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         "Used": [
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-          "urn:afb7ccbc-ae02-4cf5-a4ad-e90da3838f67"
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+          "urn:e0cf6796-f3d4-4408-801a-580d81d2167d"
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         "Used": [
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         "Used": [
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+          "urn:40085074-470f-40a7-8592-5cfde205f538"
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       {
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         "Label": "rm",
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+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "/bin/rm -rf prefiltered_func_data*",
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+          "urn:cf4823ef-3d1f-43bb-b014-d95d7677f3ab"
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       {
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         "Label": "Make directory",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "mkdir -p custom_timing_files",
         "Used": []
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       {
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+        "@id": "urn:9e5b02ef-3ed2-4f0f-96ec-59134e367424",
         "Label": "fslFixText",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
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         "Used": [
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+          "urn:20bb5ec6-2f0e-43b7-862c-bcae7b5f0c2f"
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       {
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         "Label": "Make directory",
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         "Command": "mkdir -p custom_timing_files",
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         "Label": "fslFixText",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
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         "Used": [
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+          "urn:99743df4-ee90-462d-bbfe-52cce238b77d"
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         "Label": "cp",
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+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "cp mc/prefiltered_func_data_mcf.par mc/prefiltered_func_data_mcf_final.par",
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+          "urn:3eefdc1a-c3e2-427b-be45-b122ff464a33"
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       {
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         "Label": "paste",
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+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "paste -d  ' '  mc/prefiltered_func_data_mcf_final.par > confoundevs.txt",
         "Used": []
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         "Label": "feat_model",
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         "Used": [
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+          "urn:b1ffe3d9-ecc1-40f5-b3c4-b2a6dd8a0b7c"
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         "Label": "film_gls",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
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         "Used": []
       },
       {
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         "Label": "smoothest",
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-          "urn:d0e2f63f-eaa2-4877-9fa2-bfb74ff511da"
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-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
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-          "urn:425c4eaf-5898-4b58-b1fe-dbbad201a4ff"
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       {
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         "Label": "echo",
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+        "AssociatedWith": "urn:eda0a5ba-c917-4844-b0db-b2d718610ab9",
         "Command": "echo 38352 > thresh_zstat1.vol",
         "Used": []
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       {
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         "Label": "ptoz",
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         "Label": "cluster",
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-          "urn:4a94eba4-13cf-43ef-bcf4-df58648e00e9"
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+          "urn:dfe0e715-e555-4e6f-aa5c-8b7fcf92bf1f"
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       {
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         "Label": "cluster2html",
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+          "urn:04ccee0f-77ac-4156-be6e-20d59511d6d4"
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         "Label": "fslstats",
-        "AssociatedWith": "urn:a0b9bd52-1f4c-449a-a30b-716616d3920b",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null",
         "Used": [
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+          "urn:dfe0e715-e555-4e6f-aa5c-8b7fcf92bf1f"
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       {
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         "Label": "overlay",
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@@ -935,25 +935,25 @@
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@@ -961,7 +961,7 @@
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@@ -969,7 +969,7 @@
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@@ -977,7 +977,7 @@
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@@ -985,7 +985,7 @@
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@@ -993,7 +993,7 @@
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@@ -1001,34 +1001,34 @@
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@@ -1036,34 +1036,34 @@
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@@ -1071,106 +1071,106 @@
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@@ -1178,25 +1178,25 @@
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         "AtLocation": "mean_func",
-        "GeneratedBy": "urn:9d232fd0-6a0b-4719-af89-0d818156ab32",
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         "AtLocation": "prefiltered_func_data*",
         "digest": {
@@ -1204,16 +1204,16 @@
         }
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-        "@id": "urn:b7981c4c-caca-48bd-8760-5fe3b612c1f6",
+        "@id": "urn:4c7571d2-7358-46a9-aa8d-17d024593f46",
         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:4fb3b843-49bb-41d9-95af-7ab01880f2fa",
+        "GeneratedBy": "urn:69d846d5-f7c6-4c06-a249-6e6214cbbf0f",
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           "sha256": "1d7e19792328d5040f2f9fb3c15d59de90fc771785f81c67039a043bd5f2ed20"
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-        "@id": "urn:2eb65be7-2c3d-451f-a186-14e31708f86e",
+        "@id": "urn:20bb5ec6-2f0e-43b7-862c-bcae7b5f0c2f",
         "Label": "sub-01_tone_counting.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
         "digest": {
@@ -1221,22 +1221,22 @@
         }
       },
       {
-        "@id": "urn:15f66ca8-51cf-4e03-a671-0c6fb39383a9",
+        "@id": "urn:96b316d6-37f1-4855-92ad-1ee08a6fb44a",
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         "AtLocation": "custom_timing_files/ev1.txt",
-        "GeneratedBy": "urn:194f9b1b-1cb5-4d04-a5b7-3322a5ae77e0"
+        "GeneratedBy": "urn:9e5b02ef-3ed2-4f0f-96ec-59134e367424"
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-        "@id": "urn:e58f3eaa-8aa9-40c1-8ab1-e4efbe43c204",
+        "@id": "urn:c6ed5643-9338-4f2c-ac91-1d0e6af17437",
         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:c842ad68-03aa-4d56-a726-64bc81e2eb22",
+        "GeneratedBy": "urn:7422254b-05f7-476f-9a0f-4e86f4333240",
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           "sha256": "1d7e19792328d5040f2f9fb3c15d59de90fc771785f81c67039a043bd5f2ed20"
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+        "@id": "urn:99743df4-ee90-462d-bbfe-52cce238b77d",
         "Label": "sub-01_tone_counting_probe.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1244,24 +1244,24 @@
         }
       },
       {
-        "@id": "urn:60eb6927-ada8-48c6-87eb-1b519aa6440b",
+        "@id": "urn:fbe8da44-f727-45b4-acea-f9c466ce910f",
         "Label": "ev2.txt",
         "AtLocation": "custom_timing_files/ev2.txt",
-        "GeneratedBy": "urn:e05b6219-dbc9-429f-9a68-34756ef5ca1c"
+        "GeneratedBy": "urn:ee78b807-2592-4d04-a5fe-a598c79a8f54"
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-        "@id": "urn:5bf8c031-4fac-437e-94a9-70bd54096121",
+        "@id": "urn:3eefdc1a-c3e2-427b-be45-b122ff464a33",
         "Label": "prefiltered_func_data_mcf.par",
         "AtLocation": "mc/prefiltered_func_data_mcf.par"
       },
       {
-        "@id": "urn:8885981b-cea7-4492-920a-1e5a26cbb875",
+        "@id": "urn:489ee359-4af7-4f70-b93c-6fd638b112b3",
         "Label": "prefiltered_func_data_mcf_final.par",
         "AtLocation": "mc/prefiltered_func_data_mcf_final.par",
-        "GeneratedBy": "urn:1a32d6b1-17e6-41d4-a670-17fad8f133a0"
+        "GeneratedBy": "urn:1430ed23-73d6-42db-8269-2236d93df758"
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-        "@id": "urn:ddefe5b8-47af-466b-a3e5-99a98409d213",
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         "digest": {
@@ -1269,7 +1269,7 @@
         }
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-        "@id": "urn:d0e2f63f-eaa2-4877-9fa2-bfb74ff511da",
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         "digest": {
@@ -1277,16 +1277,16 @@
         }
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       {
-        "@id": "urn:98d88eec-e2d8-4c04-bb1d-21ecf1ee3ec5",
+        "@id": "urn:f00c46bc-186a-4026-89eb-18dc37844e17",
         "Label": "smoothness",
         "AtLocation": "stats/smoothness",
-        "GeneratedBy": "urn:ad46b9a2-0e4e-453c-b888-f4e79676cfeb",
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       {
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+        "@id": "urn:dbf2e381-edc7-4023-8bce-91bef930b0ea",
         "Label": "zstat1",
         "AtLocation": "stats/zstat1",
         "digest": {
@@ -1294,16 +1294,16 @@
         }
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       {
-        "@id": "urn:89ccbc96-0197-4eb7-b08c-980efea855eb",
+        "@id": "urn:dfe0e715-e555-4e6f-aa5c-8b7fcf92bf1f",
         "Label": "thresh_zstat1",
         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:bee9f96d-0344-4880-b428-3c0d4fe9f451",
+        "GeneratedBy": "urn:da97f2d0-d3e2-463f-b3b1-b405e013599e",
         "digest": {
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       {
-        "@id": "urn:4a94eba4-13cf-43ef-bcf4-df58648e00e9",
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         "Label": "cope1",
         "AtLocation": "stats/cope1",
         "digest": {
@@ -1311,25 +1311,25 @@
         }
       },
       {
-        "@id": "urn:bb43a681-4381-4ce8-b43a-53df91bc4374",
+        "@id": "urn:1489a1c9-788b-4219-a4c8-e214343a4228",
         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:53a5181e-d780-4ac6-af16-c100dbee7957",
+        "GeneratedBy": "urn:e88ac25a-1920-4693-b775-d9aa77d9e2b5",
         "digest": {
           "sha256": "b28c170e33d2917cac55183786616a9e976e5e7f30dc7c8666341f12ed6d0277"
         }
       },
       {
-        "@id": "urn:e3c57f2e-612b-41d6-aff1-30c850c84548",
+        "@id": "urn:77b1a6d4-2c81-4425-86ca-3199c1c5a801",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:53a5181e-d780-4ac6-af16-c100dbee7957",
+        "GeneratedBy": "urn:e88ac25a-1920-4693-b775-d9aa77d9e2b5",
         "digest": {
           "sha256": "bf3b603569da6dbe3d6f0e8667d346f3ac943c9d01d2fc9743ce17abeb1547fb"
         }
       },
       {
-        "@id": "urn:4dc13e11-7a79-4297-a361-531cb7311a66",
+        "@id": "urn:04ccee0f-77ac-4156-be6e-20d59511d6d4",
         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1337,25 +1337,25 @@
         }
       },
       {
-        "@id": "urn:e53e1630-eaf0-4075-9d40-b8dbdc32b896",
+        "@id": "urn:d8b82d32-0f19-46cb-9355-082f1a0568eb",
         "Label": "rendered_thresh_zstat1",
         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:5a5ce852-41b3-42eb-8611-f778c35524b7",
+        "GeneratedBy": "urn:3600cb48-ad73-46e5-8e0c-5eb61601e385",
         "digest": {
           "sha256": "de5b9d44d95f4252f491eb45c76a0ae2b4d2c75b58664fc0df7d9153810c0bf6"
         }
       },
       {
-        "@id": "urn:5d2e648b-0728-4a90-9306-a6c1e1a8f7d8",
+        "@id": "urn:2d19aac9-48f4-41ee-b21f-e77731c5a2ed",
         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
-        "GeneratedBy": "urn:fb7115e3-1ddf-4f35-9b8a-a51ef5ba0f6e",
+        "GeneratedBy": "urn:bf7337de-6268-4c59-abef-5961f97933b6",
         "digest": {
           "sha256": "15d6a8bf7a902df8c5feeb7468a3d0caacf9eb3067c0840c2f4763f5e2301527"
         }
       },
       {
-        "@id": "urn:bd6744b9-2023-4e53-9ed3-e67bd58bfd97",
+        "@id": "urn:0af5be90-ef9c-41eb-a027-c2d10d4e3069",
         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1363,28 +1363,28 @@
         }
       },
       {
-        "@id": "urn:7386e42a-5bec-4b18-a0cb-fed7ee41cf20",
+        "@id": "urn:9559ee13-769c-4c10-9e77-a66c989afa4c",
         "Label": ".ramp.gif",
         "AtLocation": ".ramp.gif",
-        "GeneratedBy": "urn:95fcd406-75cc-4d71-b892-179ebee27d02",
+        "GeneratedBy": "urn:c38d3fd6-4413-4aeb-af2c-a4ba9e52d1ea",
         "digest": {
           "sha256": "93f4284ccb854d5a41401d9360a13223017b67479cb289a33d83836922e028a4"
         }
       },
       {
-        "@id": "urn:f564409f-84db-4594-ac89-518f2d4b8373",
+        "@id": "urn:dfc7f499-0b68-4f62-9327-6d5997de2574",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:50bea5d4-4dc1-48df-aee1-7f8a209875e7",
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       {
-        "@id": "urn:69b2efdd-746f-413f-a34e-d651b2d2fc13",
+        "@id": "urn:60f4f7a5-2c1c-45a9-82a8-2e538e9994de",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:69be5b63-382c-4d7a-a906-94a894d2a87e",
+        "GeneratedBy": "urn:bb1014cd-1635-4785-a243-d3065a59835f",
         "digest": {
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diff --git a/examples/from_parsers/fsl/fsl_thr_clustfwep05_report_log.jsonld b/examples/from_parsers/fsl/fsl_thr_clustfwep05_report_log.jsonld
index 29a6cbfbc..da728922f 100644
--- a/examples/from_parsers/fsl/fsl_thr_clustfwep05_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_thr_clustfwep05_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "@id": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,533 +13,533 @@
     ],
     "Activities": [
       {
-        "@id": "urn:31a82165-1a6a-4d14-ad89-9a464b62fbb9",
+        "@id": "urn:51edc49b-aeb0-441f-94e9-bd7d8a34438f",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:825794b7-217b-455b-8d55-754a7cea5c55"
+          "urn:c536bc02-2e99-4f33-80fa-2049cdf59bf2"
         ]
       },
       {
-        "@id": "urn:e5dd491b-1102-42cc-8a06-4e4f2544936c",
+        "@id": "urn:6f8690c8-59d4-435b-bde0-3a7bbd870e45",
         "Label": "fslroi",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:d11257eb-c99b-4d61-bdfe-3106a9771062"
+          "urn:e78b162c-1f30-4cdf-863a-8e2c248887f0"
         ]
       },
       {
-        "@id": "urn:b89b7a82-2ba0-4057-ac33-f25e2123f5a0",
+        "@id": "urn:8d1b4cad-4104-4023-a010-1b4f7ef2a12b",
         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_cluster_p005.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_cluster_p005.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_cluster_p005.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_cluster_p005.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_cluster_p005.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:1c33b33c-eb18-4268-9d03-da8ad03ae6f4",
-          "urn:d15f5078-43d1-4fc8-8cf4-3841b62016a6",
-          "urn:4e833401-7f0b-4d31-9c44-f13789375421"
+          "urn:241187a5-ac48-4a1e-8598-30c933d02e3f",
+          "urn:711c3b2d-51b7-457e-af1a-8d07e299e9b9",
+          "urn:f8cb0e67-b771-4013-aef5-f3570952ec55"
         ]
       },
       {
-        "@id": "urn:8275d440-30cc-4e5c-8c5a-b01e135fe60d",
+        "@id": "urn:927ff65e-1d3e-4803-8c17-18433a1607c1",
         "Label": "Make directory",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "Command": "/bin/mkdir -p /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_cluster_p005.feat/reg",
         "Used": []
       },
       {
-        "@id": "urn:8ec6fb83-d4b8-40a7-90c3-73f5f3c9788a",
+        "@id": "urn:584dcc11-4282-4005-a233-aa247685f735",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
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         "Used": [
-          "urn:d15f5078-43d1-4fc8-8cf4-3841b62016a6"
+          "urn:f8cb0e67-b771-4013-aef5-f3570952ec55"
         ]
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-        "@id": "urn:ca2a07e7-391b-4ac5-b0fc-3609119a2062",
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         "Label": "fslmaths",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
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         "Used": [
-          "urn:919fe30c-bd24-48b2-8300-e9c516a5a2e5"
+          "urn:432fd184-6d95-4966-bc34-3703aaebc045"
         ]
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+        "@id": "urn:d16c50a6-7f32-4b74-b8f3-8f9c5a14d796",
         "Label": "epi_reg",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/epi_reg --epi=example_func --t1=highres_head --t1brain=highres --out=example_func2highres",
         "Used": []
       },
       {
-        "@id": "urn:edee9b02-cf98-4fcd-9456-bd1d52b7201c",
+        "@id": "urn:ec08b899-bdfa-4f0f-b3fd-8671c1ceea3d",
         "Label": "convert_xfm",
-        "AssociatedWith": "urn:8e150d04-ca7e-48c8-a1fb-f2105218cd3f",
+        "AssociatedWith": "urn:45d976f3-c2d0-4772-96db-c01c35484f80",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/convert_xfm -inverse -omat highres2example_func.mat example_func2highres.mat",
         "Used": [
-          "urn:04d86c72-4729-4d2f-b96e-5528baeb3bb0"
+          "urn:155a15be-dfc8-497f-bcab-b479fbce21c2"
         ]
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       {
-        "@id": "urn:52b30424-47b8-46b7-9658-d0f751121a88",
+        "@id": "urn:d1727f99-2840-4f61-b0fc-7a3b7833c964",
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-          "urn:f6d3ee99-0593-46f7-aa75-5e8b5cda5c26"
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         "Label": "pngappend",
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         "Used": [
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         "Label": "pngappend",
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         "Label": "pngappend",
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         "Label": "rm",
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         "Command": "/bin/rm -f sl?.png example_func2highres2.png",
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         "Command": "/bin/rm example_func2highres1.png",
         "Used": [
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+          "urn:afe142bc-c35a-4051-910a-ef29f94fd623"
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         "Label": "mcflirt",
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         "Used": [
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         "Label": "Make directory",
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         "Command": "/bin/mkdir -p mc",
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         "Label": "mv",
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         "Used": [
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         "Used": [
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         "Label": "fsl_tsplot",
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-          "urn:54e53611-1185-4cbc-a135-6669556584ba"
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         "Used": [
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         "Used": [
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@@ -903,25 +903,25 @@
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@@ -929,7 +929,7 @@
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@@ -937,7 +937,7 @@
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@@ -945,7 +945,7 @@
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       {
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@@ -953,7 +953,7 @@
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@@ -961,7 +961,7 @@
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@@ -969,34 +969,34 @@
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@@ -1004,34 +1004,34 @@
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@@ -1039,106 +1039,106 @@
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@@ -1146,25 +1146,25 @@
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       {
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-        "GeneratedBy": "urn:5a10086e-715a-46fb-a249-a2bb0dae791c",
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-        "GeneratedBy": "urn:6aeb1fae-cce5-4617-a260-14ede7ddafd0",
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         "Label": "prefiltered_func_data*",
         "AtLocation": "prefiltered_func_data*",
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@@ -1172,16 +1172,16 @@
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-        "GeneratedBy": "urn:98b17263-9c83-441a-8036-eae0e019e728",
+        "GeneratedBy": "urn:9db814a8-1bcc-44c3-983e-9df4ee6fe2dd",
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         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting.txt",
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@@ -1189,22 +1189,22 @@
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         "Label": "custom_timing_files",
         "AtLocation": "custom_timing_files",
-        "GeneratedBy": "urn:e1032fac-1238-49eb-a651-fe0ae2e8d155",
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         "Label": "sub-01_tone_counting_probe.txt",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/FSL/ONSETS/sub-01_tone_counting_probe.txt",
         "digest": {
@@ -1212,13 +1212,13 @@
         }
       },
       {
-        "@id": "urn:83e679fa-bc45-496a-b380-e64dbf09045e",
+        "@id": "urn:83c705c4-10e0-4063-9745-7ebce793f929",
         "Label": "ev2.txt",
         "AtLocation": "custom_timing_files/ev2.txt",
-        "GeneratedBy": "urn:8465e4d8-80f6-4f0f-b165-cb30f2704a4d"
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-        "@id": "urn:32ca811a-225c-43e8-a31c-2546ee3ada58",
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         "AtLocation": "stats/res4d",
         "digest": {
@@ -1226,16 +1226,16 @@
         }
       },
       {
-        "@id": "urn:9be18a5c-3e3e-47aa-bac9-211eae7b613e",
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         "Label": "smoothness",
         "AtLocation": "stats/smoothness",
-        "GeneratedBy": "urn:63b1ead7-b09f-4f03-8bc6-1d1d547c045f",
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         "digest": {
@@ -1243,16 +1243,16 @@
         }
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       {
-        "@id": "urn:9b12c597-55e3-4cc1-8d36-7229cbd4b64a",
+        "@id": "urn:4d776027-1b79-454d-b119-8be7428aa40a",
         "Label": "thresh_zstat1",
         "AtLocation": "thresh_zstat1",
-        "GeneratedBy": "urn:4ae04bd2-f829-465d-967b-51490c165efc",
+        "GeneratedBy": "urn:70d7aa44-9486-4d80-a553-314541d0689f",
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         "AtLocation": "stats/cope1",
         "digest": {
@@ -1260,25 +1260,25 @@
         }
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       {
-        "@id": "urn:12dfa6ff-144e-4f66-9fd4-2409d56c120d",
+        "@id": "urn:85f8c26a-fb6e-4a28-b689-84fc0a73caa9",
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         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:536112dd-62ec-4f7c-bad8-95c16e582d83",
+        "GeneratedBy": "urn:7229a79a-35b5-414f-bbef-a80c6a0aa382",
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-        "@id": "urn:8fe8a3f1-b285-4417-b942-d9a281060918",
+        "@id": "urn:056dd331-56c7-4481-9025-6a972c52f7af",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:536112dd-62ec-4f7c-bad8-95c16e582d83",
+        "GeneratedBy": "urn:7229a79a-35b5-414f-bbef-a80c6a0aa382",
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           "sha256": "bf3b603569da6dbe3d6f0e8667d346f3ac943c9d01d2fc9743ce17abeb1547fb"
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-        "@id": "urn:19e57842-9830-4d40-b483-414e17fe13b2",
+        "@id": "urn:3d020ecb-fd28-407c-b4ee-5440d1a2c024",
         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1286,25 +1286,25 @@
         }
       },
       {
-        "@id": "urn:e15e0c07-ad7d-4cf8-8615-461337751f00",
+        "@id": "urn:42662c59-30f0-487c-b0cc-2d69743b66b6",
         "Label": "rendered_thresh_zstat1",
         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:068a56ed-fa24-4ab2-9781-d333a439bf94",
+        "GeneratedBy": "urn:2f56c0f2-f0d5-4997-9cb7-dc9136310252",
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           "sha256": "de5b9d44d95f4252f491eb45c76a0ae2b4d2c75b58664fc0df7d9153810c0bf6"
         }
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       {
-        "@id": "urn:8679d689-6609-4dd7-85a2-330a667c96e9",
+        "@id": "urn:95e20196-ea50-47d2-85d2-5ca1fceaeb1e",
         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
-        "GeneratedBy": "urn:acd4e7d2-df0c-48fb-aa83-679b3df6591c",
+        "GeneratedBy": "urn:b86afaa0-9f58-422b-a895-1d2c7f5252c1",
         "digest": {
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-        "@id": "urn:9d964c85-58a1-40e2-8ea1-06c596be6661",
+        "@id": "urn:5634518e-8272-499c-ab40-b15f1a0d7d8a",
         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1312,28 +1312,28 @@
         }
       },
       {
-        "@id": "urn:e9c625c6-6f1f-4f30-a2ca-393e566b1ad8",
+        "@id": "urn:c78c31e5-b426-479e-962a-b525066ac296",
         "Label": ".ramp.gif",
         "AtLocation": ".ramp.gif",
-        "GeneratedBy": "urn:5c190260-bee3-477a-956e-d0675ac7e19e",
+        "GeneratedBy": "urn:0d0a0fe7-66f5-4922-b89f-3eede3d17736",
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       {
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+        "@id": "urn:82d0c2a5-8bef-434d-b2ec-a87aa9951889",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:5d51bc01-580e-4fb9-a4b5-453ef634cd1a",
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+        "@id": "urn:7d6d5f29-98cb-4f1e-a0b4-748891d45584",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:f1197319-954d-477d-bb96-7dee72a45bd7",
+        "GeneratedBy": "urn:3e6bfd7e-087f-4f51-afb1-882eb4cbe149",
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diff --git a/examples/from_parsers/fsl/fsl_thr_voxelfwep05_report_log.jsonld b/examples/from_parsers/fsl/fsl_thr_voxelfwep05_report_log.jsonld
index 31a7426b4..4dedfbd82 100644
--- a/examples/from_parsers/fsl/fsl_thr_voxelfwep05_report_log.jsonld
+++ b/examples/from_parsers/fsl/fsl_thr_voxelfwep05_report_log.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:fa2200bb-fb7c-4e93-af75-14a37b278ed7",
+        "@id": "urn:3a91568f-3bee-4245-9cdc-fd2740c30039",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "FSL",
@@ -13,540 +13,540 @@
     ],
     "Activities": [
       {
-        "@id": "urn:3ce0d53d-6b9c-4ee6-9c0d-426ad9f2ce5d",
+        "@id": "urn:ac5590b1-bd70-4147-b25f-7328029e7372",
         "Label": "fslmaths",
-        "AssociatedWith": "urn:fa2200bb-fb7c-4e93-af75-14a37b278ed7",
+        "AssociatedWith": "urn:3a91568f-3bee-4245-9cdc-fd2740c30039",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslmaths /storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold prefiltered_func_data -odt float",
         "Used": [
-          "urn:1e43c0bd-9af8-46ce-8a5e-b016598773e4"
+          "urn:08d57a05-4f66-4823-85e2-c934a8c15fa0"
         ]
       },
       {
-        "@id": "urn:cd429bbc-d81b-4918-ae96-ded7b7e18ce3",
+        "@id": "urn:228beb26-f70c-48f3-9558-0bd838529fbe",
         "Label": "fslroi",
-        "AssociatedWith": "urn:fa2200bb-fb7c-4e93-af75-14a37b278ed7",
+        "AssociatedWith": "urn:3a91568f-3bee-4245-9cdc-fd2740c30039",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/fslroi prefiltered_func_data example_func 52 1",
         "Used": [
-          "urn:309094d0-38c7-4b73-b683-aebd81f546ff"
+          "urn:3db2bc04-8f31-4762-869a-f720e632d374"
         ]
       },
       {
-        "@id": "urn:ba63182a-d2c9-4442-8ebf-8702b0055293",
+        "@id": "urn:a2819925-6bb1-4437-91bb-8750d8d911eb",
         "Label": "mainfeatreg",
-        "AssociatedWith": "urn:fa2200bb-fb7c-4e93-af75-14a37b278ed7",
+        "AssociatedWith": "urn:3a91568f-3bee-4245-9cdc-fd2740c30039",
         "Command": "/usr/local/packages/fsl-5.0.10/bin/mainfeatreg -F 6.00 -d /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_FWE_p005.feat -l /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_FWE_p005.feat/logs/feat2_pre -R /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_FWE_p005.feat/report_unwarp.html -r /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_FWE_p005.feat/report_reg.html  -i /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/fsl_FWE_p005.feat/example_func.nii.gz  -h /storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL/sub-01_T1w_brain -w  BBR -x 90 -s /usr/local/packages/fsl-5.0.8/data/standard/MNI152_T1_2mm_brain -y 12 -z 90",
         "Used": [
-          "urn:2ba5ba14-2b50-43e0-881d-d4ac25f89d94",
-          "urn:98b8d939-2139-43fe-9809-aff688aedb64",
-          "urn:25eaecbc-9e22-47b3-bb25-bc1cd9c184a9"
+          "urn:26ab105c-e2ae-422f-bea8-19180cabf617",
+          "urn:7ce0ef63-f223-435e-8607-3e688090e616",
+          "urn:bf05fd54-3ddc-4413-845c-b58f739d314b"
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       {
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+        "@id": "urn:f4597fb7-fadd-471e-829c-1481a4122c40",
         "Label": "Make directory",
-        "AssociatedWith": "urn:fa2200bb-fb7c-4e93-af75-14a37b278ed7",
+        "AssociatedWith": "urn:3a91568f-3bee-4245-9cdc-fd2740c30039",
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         "Used": []
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         "Used": [
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         "Used": [
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         "Used": []
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         "Used": [
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+          "urn:a62c54eb-d4f9-42ba-ad9b-760cb9ca01ce",
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         "Label": "slicer",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/slicer highres example_func2highres -s 2 -x 0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png",
         "Used": [
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         "Label": "pngappend",
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         "Command": "/usr/local/packages/fsl-5.0.10/bin/pngappend sla.png slb.png slc.png sld.png sle.png slf.png slg.png slh.png sli.png slj.png slk.png sll.png example_func2highres2.png",
         "Used": [
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         "Label": "pngappend",
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         "Label": "rm",
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         "Command": "/bin/rm example_func2highres1.png",
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         "Label": "mcflirt",
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         "Used": [
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         "Label": "Make directory",
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         "Command": "/bin/mkdir -p mc",
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         "Label": "fsl_tsplot",
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         "Used": [
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+          "urn:0e68eb6d-c08a-4a9f-abe3-d6da7513de35"
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Label": "fsl_tsplot",
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         "Used": [
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         "Label": "fslmaths",
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-          "urn:c2a01973-43c7-40c2-9965-0854e22d0f72"
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         "Label": "fslstats",
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         "Used": [
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+          "urn:d3c5145f-774b-428e-834c-b7c6f59a6035"
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         "Label": "fslstats",
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-          "urn:c2a01973-43c7-40c2-9965-0854e22d0f72"
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@@ -554,25 +554,25 @@
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@@ -580,7 +580,7 @@
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@@ -588,7 +588,7 @@
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@@ -596,31 +596,31 @@
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@@ -628,13 +628,13 @@
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@@ -642,16 +642,16 @@
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@@ -659,250 +659,250 @@
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@@ -910,25 +910,25 @@
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@@ -936,7 +936,7 @@
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@@ -944,7 +944,7 @@
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@@ -952,7 +952,7 @@
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@@ -960,7 +960,7 @@
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@@ -968,7 +968,7 @@
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@@ -976,34 +976,34 @@
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@@ -1011,34 +1011,34 @@
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@@ -1046,106 +1046,106 @@
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@@ -1153,25 +1153,25 @@
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@@ -1179,16 +1179,16 @@
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@@ -1196,22 +1196,22 @@
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@@ -1219,13 +1219,13 @@
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@@ -1233,16 +1233,16 @@
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@@ -1250,16 +1250,16 @@
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@@ -1267,25 +1267,25 @@
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         "Label": "cluster_mask_zstat1",
         "AtLocation": "cluster_mask_zstat1",
-        "GeneratedBy": "urn:59ad2686-bf03-4c54-ab58-52d3e36e159d",
+        "GeneratedBy": "urn:3e718433-e2b5-434d-a596-249413698da1",
         "digest": {
           "sha256": "b28c170e33d2917cac55183786616a9e976e5e7f30dc7c8666341f12ed6d0277"
         }
       },
       {
-        "@id": "urn:10f8b075-1fca-472e-b140-189ba027fbad",
+        "@id": "urn:f8a81771-0ea9-47d0-8c3e-b3482efcb7a4",
         "Label": "cope1",
         "AtLocation": "stats/cope1",
-        "GeneratedBy": "urn:59ad2686-bf03-4c54-ab58-52d3e36e159d",
+        "GeneratedBy": "urn:3e718433-e2b5-434d-a596-249413698da1",
         "digest": {
           "sha256": "bf3b603569da6dbe3d6f0e8667d346f3ac943c9d01d2fc9743ce17abeb1547fb"
         }
       },
       {
-        "@id": "urn:4f8e64ff-f2e7-4b80-b21d-aab197e3b643",
+        "@id": "urn:e36979a0-f0bf-44cd-aadc-8b80d1ca6d10",
         "Label": "cluster_zstat1",
         "AtLocation": "cluster_zstat1",
         "digest": {
@@ -1293,25 +1293,25 @@
         }
       },
       {
-        "@id": "urn:29e1c19f-538c-4342-9e76-a6866ccd580f",
+        "@id": "urn:8796fa10-3cd2-44da-80b5-3e07ffc7eb8b",
         "Label": "rendered_thresh_zstat1",
         "AtLocation": "rendered_thresh_zstat1",
-        "GeneratedBy": "urn:f6388f61-a430-4ddb-8dc8-558e2ef8b0ac",
+        "GeneratedBy": "urn:5bbeda84-ea59-4602-8539-b4825125464d",
         "digest": {
           "sha256": "de5b9d44d95f4252f491eb45c76a0ae2b4d2c75b58664fc0df7d9153810c0bf6"
         }
       },
       {
-        "@id": "urn:717e6e9d-b97e-467c-aab3-ae4f15459b31",
+        "@id": "urn:6b2dccb0-069c-4d61-91cb-9885fcb4a556",
         "Label": "rendered_thresh_zstat1.png",
         "AtLocation": "rendered_thresh_zstat1.png",
-        "GeneratedBy": "urn:fe757dd9-4588-4498-813e-a29905e30b56",
+        "GeneratedBy": "urn:bb40fcd5-09a3-4b42-93b4-ed8ed7ee95dd",
         "digest": {
           "sha256": "15d6a8bf7a902df8c5feeb7468a3d0caacf9eb3067c0840c2f4763f5e2301527"
         }
       },
       {
-        "@id": "urn:e255be3b-54f2-4438-a0c3-73a0866a113e",
+        "@id": "urn:47e1138d-c62e-4541-b2d0-585c81198052",
         "Label": "ramp.gif",
         "AtLocation": "/usr/local/packages/fsl-5.0.10/etc/luts/ramp.gif",
         "digest": {
@@ -1319,28 +1319,28 @@
         }
       },
       {
-        "@id": "urn:2fc6ed9f-b90f-4833-a80d-770788678427",
+        "@id": "urn:34938128-0ef3-4618-8817-c35f21e124a4",
         "Label": ".ramp.gif",
         "AtLocation": ".ramp.gif",
-        "GeneratedBy": "urn:d27d94c1-784a-4d97-94ff-b674103f64e8",
+        "GeneratedBy": "urn:06372779-6792-4e37-84d1-cd68357b7aed",
         "digest": {
           "sha256": "93f4284ccb854d5a41401d9360a13223017b67479cb289a33d83836922e028a4"
         }
       },
       {
-        "@id": "urn:92706503-83a5-42fd-b68e-7dba8a30c693",
+        "@id": "urn:39ea58bb-83ea-4c9e-8050-7adcf255c33d",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:51597196-e9da-4265-8d9f-85e8e2c7d6cb",
+        "GeneratedBy": "urn:19459e8e-1991-490b-b90f-a18c3dc7528b",
         "digest": {
           "sha256": "2a74042f4edf02288edf16961307f741651efb4346e102a04b7603e781d1625e"
         }
       },
       {
-        "@id": "urn:39992d62-da1f-4153-b77c-a96fe95f8555",
+        "@id": "urn:3b785f19-73bf-4c34-a038-7a9b4396a169",
         "Label": "tsplot",
         "AtLocation": "tsplot",
-        "GeneratedBy": "urn:e1e59516-0eed-4c3c-84d8-68271d7d9ac8",
+        "GeneratedBy": "urn:1dcfe420-527d-4cc2-8411-9c1433b5fdff",
         "digest": {
           "sha256": "2a74042f4edf02288edf16961307f741651efb4346e102a04b7603e781d1625e"
         }
diff --git a/examples/from_parsers/spm/spm_2_t_test_batch.jsonld b/examples/from_parsers/spm/spm_2_t_test_batch.jsonld
index 895825f0b..58e6618b6 100644
--- a/examples/from_parsers/spm/spm_2_t_test_batch.jsonld
+++ b/examples/from_parsers/spm/spm_2_t_test_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "@id": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:5daaf5df-9d7a-4299-bb24-1a91eecda1ef",
+        "@id": "urn:7271accf-6874-4774-8e77-f2c8317f2b9b",
         "Label": "Move file",
         "Used": [
-          "urn:226860d4-b23a-417b-83a2-cc885187a875"
+          "urn:1d1b3389-23b1-48cb-9e01-94d17230ada3"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:8ec92f01-2cee-4390-89c0-c709c8eb4d3a",
+        "@id": "urn:acc7bdb5-8fac-4151-8026-d741958f047d",
         "Label": "Move file",
         "Used": [
-          "urn:54127544-1b9f-4572-8ddf-9901871049e4"
+          "urn:5a59dd20-8346-4538-8661-9396d02224d7"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9",
+        "@id": "urn:4dc466e1-b429-43bb-b880-add7232b7347",
         "Label": "Gunzip",
         "Used": [
-          "urn:d501296e-75d6-46af-a589-879fb0c19e1f"
+          "urn:f33a292b-a905-408f-ba76-441a2058a27b"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:10527ace-1989-4ac8-a63c-3916f35095af",
+        "@id": "urn:dda87c51-4f5a-49b0-928d-a53c9b3c47f6",
         "Label": "Gunzip",
         "Used": [
-          "urn:4b4de4da-5b6f-47a9-8120-8c797e7906a4"
+          "urn:95b6a627-a7cb-4607-b603-d359f8b3c75c"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:04f39fbd-de85-4f4f-8356-f1af9a58cf82",
+        "@id": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a",
         "Label": "Realign",
         "Used": [
-          "urn:bb94fee4-f2af-4aa5-9265-91d90e21a9ac"
+          "urn:c3acf82f-0adc-4874-bd69-b28b507542c7"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:806d8de7-23c7-46e1-b393-3d7fa8d97c2e",
+        "@id": "urn:19cea046-4b73-4065-8d07-f2ab4cd05577",
         "Label": "Coregister",
         "Used": [
-          "urn:17690087-d2ed-4f96-80fe-672428147074",
-          "urn:57b7a47a-a8bd-4f4f-afe5-7d15cdba2f76"
+          "urn:b5bab357-1440-40f7-a07a-e81de6dee8b8",
+          "urn:b5c075e3-f245-4bc9-8cc4-d55eec21091e"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:e7a980b9-8ba5-46e3-bbde-f90aa33389b6",
+        "@id": "urn:7cd59bc5-33fb-4897-b2bb-5cfee20798ee",
         "Label": "Segment",
         "Used": [
-          "urn:57b7a47a-a8bd-4f4f-afe5-7d15cdba2f76"
+          "urn:b5bab357-1440-40f7-a07a-e81de6dee8b8"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:4b894bf9-bd29-4196-ae70-53367dfdf420",
+        "@id": "urn:920dddce-28c6-421c-882c-9a68550b6b34",
         "Label": "Normalize",
         "Used": [
-          "urn:400dfff1-82aa-4fc8-9730-33f12fb8c935",
-          "urn:17690087-d2ed-4f96-80fe-672428147074"
+          "urn:b5c075e3-f245-4bc9-8cc4-d55eec21091e",
+          "urn:d254e790-3eb0-457a-a728-94483f898737"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:aab53304-9b12-437b-806d-49e31efb24d7",
+        "@id": "urn:12748a32-4f2a-4755-966a-c3bf5f628803",
         "Label": "Normalize",
         "Used": [
-          "urn:400dfff1-82aa-4fc8-9730-33f12fb8c935",
-          "urn:400dfff1-82aa-4fc8-9730-33f12fb8c935"
+          "urn:d254e790-3eb0-457a-a728-94483f898737"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:9eed3a2e-d164-447c-b3bc-d21d5bef7b7e",
+        "@id": "urn:7437f41a-5203-4d70-ac17-53d387d4947b",
         "Label": "Smooth",
         "Used": [
-          "urn:869adb8d-9320-4314-abe1-6b6d044a5c59"
+          "urn:a4f12a49-cdd0-4f79-8ec4-1e30561765ee"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:bca7fdff-cf83-4ed5-86ca-ce6de993d731",
+        "@id": "urn:aca48b64-0f58-44c1-bf54-eb7e9089f5b9",
         "Label": "Stat Design",
         "Used": [
-          "urn:0b7aab45-33e6-4933-87bf-1f8f951f1bb1",
-          "urn:1eef669f-661f-4568-8142-004f40d9ce57"
+          "urn:31571f6d-d8ca-4c66-a64a-c2a2a88753d4",
+          "urn:3f64e75a-698c-4349-9f6a-7bd538d135df"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_2_T_test'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_2_T_test'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:9f28f0a1-da7e-4f27-9c55-3e2ac9572dc0",
+        "@id": "urn:7d6a5166-4869-456a-a070-411d9eaf76b3",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:f6e52004-da13-4dda-b778-6622f666c503"
+          "urn:924f0baf-a156-4e39-835b-4b9974948de2"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:46658bb2-25a3-4c69-a644-fecd3b60b9ca",
+        "@id": "urn:5c0e3a05-6e09-4bc9-bb52-e8c4c019ce22",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:f23e0548-8b55-4fc9-ada0-c820cb55401c"
+          "urn:7a6d6abf-77ee-4c02-a123-ba97020ff74c"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.name = 'tone counting probe vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.weights = [0 1];\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -246,12 +245,12 @@
         }
       },
       {
-        "@id": "urn:6d3d46ee-7e37-43d2-8ba4-a2bb416a4b5f",
+        "@id": "urn:71f1ade3-2b62-4c18-a187-26d24d3a7f1a",
         "Label": "Threshold",
         "Used": [
-          "urn:703a7425-757e-41ca-ac83-9c8446eab8eb"
+          "urn:9d7031f9-b790-4f40-b4db-a36f7f1cdd18"
         ],
-        "AssociatedWith": "urn:f86f58b5-74cf-4907-8b88-34d086b658e3",
+        "AssociatedWith": "urn:e10b80dc-2736-45e6-b5cb-3754b829f806",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -269,7 +268,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:226860d4-b23a-417b-83a2-cc885187a875",
+        "@id": "urn:1d1b3389-23b1-48cb-9e01-94d17230ada3",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -277,7 +276,7 @@
         }
       },
       {
-        "@id": "urn:54127544-1b9f-4572-8ddf-9901871049e4",
+        "@id": "urn:5a59dd20-8346-4538-8661-9396d02224d7",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -285,57 +284,57 @@
         }
       },
       {
-        "@id": "urn:d501296e-75d6-46af-a589-879fb0c19e1f",
+        "@id": "urn:f33a292b-a905-408f-ba76-441a2058a27b",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:5daaf5df-9d7a-4299-bb24-1a91eecda1ef"
+        "GeneratedBy": "urn:7271accf-6874-4774-8e77-f2c8317f2b9b"
       },
       {
-        "@id": "urn:4b4de4da-5b6f-47a9-8120-8c797e7906a4",
+        "@id": "urn:95b6a627-a7cb-4607-b603-d359f8b3c75c",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:8ec92f01-2cee-4390-89c0-c709c8eb4d3a"
+        "GeneratedBy": "urn:acc7bdb5-8fac-4151-8026-d741958f047d"
       },
       {
-        "@id": "urn:bb94fee4-f2af-4aa5-9265-91d90e21a9ac",
+        "@id": "urn:c3acf82f-0adc-4874-bd69-b28b507542c7",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:bd299897-9eaf-4062-a392-2c4c2e29f7a9"
+        "GeneratedBy": "urn:4dc466e1-b429-43bb-b880-add7232b7347"
       },
       {
-        "@id": "urn:17690087-d2ed-4f96-80fe-672428147074",
+        "@id": "urn:b5c075e3-f245-4bc9-8cc4-d55eec21091e",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:04f39fbd-de85-4f4f-8356-f1af9a58cf82"
+        "GeneratedBy": "urn:3625a84c-5333-49e0-86c1-737bfc8d7f7a"
       },
       {
-        "@id": "urn:57b7a47a-a8bd-4f4f-afe5-7d15cdba2f76",
+        "@id": "urn:b5bab357-1440-40f7-a07a-e81de6dee8b8",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:10527ace-1989-4ac8-a63c-3916f35095af"
+        "GeneratedBy": "urn:dda87c51-4f5a-49b0-928d-a53c9b3c47f6"
       },
       {
-        "@id": "urn:400dfff1-82aa-4fc8-9730-33f12fb8c935",
+        "@id": "urn:d254e790-3eb0-457a-a728-94483f898737",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:e7a980b9-8ba5-46e3-bbde-f90aa33389b6",
+        "GeneratedBy": "urn:7cd59bc5-33fb-4897-b2bb-5cfee20798ee",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:af065d62-f7ad-401d-8556-3779423d515c",
+        "@id": "urn:1a0a3bff-cc42-4522-8a1b-0ec281a16e51",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:e7a980b9-8ba5-46e3-bbde-f90aa33389b6",
+        "GeneratedBy": "urn:7cd59bc5-33fb-4897-b2bb-5cfee20798ee",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:869adb8d-9320-4314-abe1-6b6d044a5c59",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:4b894bf9-bd29-4196-ae70-53367dfdf420"
+        "@id": "urn:a4f12a49-cdd0-4f79-8ec4-1e30561765ee",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:920dddce-28c6-421c-882c-9a68550b6b34"
       },
       {
-        "@id": "urn:1eef669f-661f-4568-8142-004f40d9ce57",
+        "@id": "urn:3f64e75a-698c-4349-9f6a-7bd538d135df",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -343,24 +342,24 @@
         }
       },
       {
-        "@id": "urn:0b7aab45-33e6-4933-87bf-1f8f951f1bb1",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:9eed3a2e-d164-447c-b3bc-d21d5bef7b7e"
+        "@id": "urn:31571f6d-d8ca-4c66-a64a-c2a2a88753d4",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:7437f41a-5203-4d70-ac17-53d387d4947b"
       },
       {
-        "@id": "urn:f6e52004-da13-4dda-b778-6622f666c503",
+        "@id": "urn:924f0baf-a156-4e39-835b-4b9974948de2",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:bca7fdff-cf83-4ed5-86ca-ce6de993d731"
+        "GeneratedBy": "urn:aca48b64-0f58-44c1-bf54-eb7e9089f5b9"
       },
       {
-        "@id": "urn:f23e0548-8b55-4fc9-ada0-c820cb55401c",
+        "@id": "urn:7a6d6abf-77ee-4c02-a123-ba97020ff74c",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:9f28f0a1-da7e-4f27-9c55-3e2ac9572dc0"
+        "GeneratedBy": "urn:7d6a5166-4869-456a-a070-411d9eaf76b3"
       },
       {
-        "@id": "urn:703a7425-757e-41ca-ac83-9c8446eab8eb",
+        "@id": "urn:9d7031f9-b790-4f40-b4db-a36f7f1cdd18",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:46658bb2-25a3-4c69-a644-fecd3b60b9ca"
+        "GeneratedBy": "urn:5c0e3a05-6e09-4bc9-bb52-e8c4c019ce22"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_HRF_informed_basis_batch.jsonld b/examples/from_parsers/spm/spm_HRF_informed_basis_batch.jsonld
index 630e93047..deb111d9b 100644
--- a/examples/from_parsers/spm/spm_HRF_informed_basis_batch.jsonld
+++ b/examples/from_parsers/spm/spm_HRF_informed_basis_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "@id": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:b10473eb-5f57-4126-b12a-75a8302c7d6c",
+        "@id": "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af",
         "Label": "Move file",
         "Used": [
-          "urn:6cdc1962-95fb-4726-8f99-e6a217f57a15"
+          "urn:360c6e24-8ef1-4e78-a20c-4f1e6ebabc67"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:4126e001-b2b1-4b12-a084-2ed8afbd3271",
+        "@id": "urn:0132a039-6f29-43c3-95e5-c1f46d2f6919",
         "Label": "Move file",
         "Used": [
-          "urn:48b63383-ce45-404f-bda1-96168e337b80"
+          "urn:96d45e7e-9830-4d18-bab2-b0968b5f6d40"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:0af45bce-46c7-418d-90aa-c60de084ad56",
+        "@id": "urn:e7fa77d8-7c17-453f-bf44-06a83aa361fb",
         "Label": "Gunzip",
         "Used": [
-          "urn:d2ef3f1c-c063-440e-b174-047af4076a07"
+          "urn:8e3dccf2-4041-43a7-ae8e-c6693ee12610"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:70f2b950-1da8-47bd-9a74-7baa69660fbe",
+        "@id": "urn:35351fd9-63f9-465b-8b5f-9d5214224587",
         "Label": "Gunzip",
         "Used": [
-          "urn:23a1709c-98bd-4406-a568-7599a5950947"
+          "urn:4405e61e-5f17-478e-8619-f860c4f23e39"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:c4baf3df-0ef1-46a1-837c-11aa62fc7a4e",
+        "@id": "urn:1d237c07-a52d-4a05-81d5-bbabc95bf4d5",
         "Label": "Realign",
         "Used": [
-          "urn:5cef23cf-7cd9-4210-990e-6e91f48dbd73"
+          "urn:03d5f94b-379d-43ba-82a1-346e22e37619"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:34578183-176c-415f-b749-50fa24842adb",
+        "@id": "urn:cc63cbf1-a938-4f36-94b0-28d7334c06ff",
         "Label": "Coregister",
         "Used": [
-          "urn:ed9cf935-b21a-42ec-a454-ee7dd58818f4",
-          "urn:ba3146d8-e52f-45f1-a1a4-a2af80050930"
+          "urn:2420bc5d-17a3-48d3-9182-fcca102bd8bf",
+          "urn:8270d8d8-058e-45d1-bcc6-2073d90606e5"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:98e35494-b413-4218-b09a-4736ca2f5580",
+        "@id": "urn:d5c97dfd-bc9a-4c8f-bd4f-fa5162003600",
         "Label": "Segment",
         "Used": [
-          "urn:ba3146d8-e52f-45f1-a1a4-a2af80050930"
+          "urn:2420bc5d-17a3-48d3-9182-fcca102bd8bf"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:b87ce270-a7b7-4db0-b9ea-1be043aad9f5",
+        "@id": "urn:1bea0f51-9adc-43ee-8606-9199fe51d37c",
         "Label": "Normalize",
         "Used": [
-          "urn:1807e023-7810-4c8a-ba7e-62ac784fe919",
-          "urn:ed9cf935-b21a-42ec-a454-ee7dd58818f4"
+          "urn:8270d8d8-058e-45d1-bcc6-2073d90606e5",
+          "urn:f4931a39-0143-4666-b2d0-ea5a028c7585"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:aca5ea51-558c-4d26-b3e4-687a77410260",
+        "@id": "urn:90f71712-65b6-4afd-9375-13f368a3ae90",
         "Label": "Normalize",
         "Used": [
-          "urn:1807e023-7810-4c8a-ba7e-62ac784fe919",
-          "urn:1807e023-7810-4c8a-ba7e-62ac784fe919"
+          "urn:f4931a39-0143-4666-b2d0-ea5a028c7585"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:312d6e00-b598-48e6-a211-aa787cc0f427",
+        "@id": "urn:06099155-3078-41fa-b2dd-38b491373a17",
         "Label": "Smooth",
         "Used": [
-          "urn:7acc757f-48c5-4675-a39b-3733beca8099"
+          "urn:d2d3e2a4-d1c8-4526-981d-515d6e512abc"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:d6a584e7-0498-400e-8978-13fa03639d6d",
+        "@id": "urn:b38636c2-8db1-4744-9952-28a75ff3368d",
         "Label": "Stat Design",
         "Used": [
-          "urn:91024a06-af86-4fb0-afa9-ebe7bfd999e1",
-          "urn:52c1a8e5-c14b-48df-8a80-29367b081e4e"
+          "urn:f3d0fe4f-37ea-4f4c-a67b-d761a2d2c64e",
+          "urn:76cf5f17-a795-4078-8068-c9e841f985ec"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_HRF_informed_basis'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [1 1];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_HRF_informed_basis'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:3b4e7ef1-b31c-4fb3-ae81-90f628678f4b",
+        "@id": "urn:5930e704-0004-4552-aea9-a0eeceb4c5fd",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:28a1f753-74e8-465e-9ba7-0723531947f6"
+          "urn:c6e14ecb-e59d-4623-9d39-1adedd84a242"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:aab7e482-df3a-4613-8609-1527e33b0cfa",
+        "@id": "urn:d1ae6edb-eb2d-4090-8a91-27b487473beb",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:46c30a98-36d1-480e-b0a6-e9e7d245f814"
+          "urn:fbee7fb9-d4f2-4e42-a7f6-b373c25c08be"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0 0 0 0 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:012ee049-f81b-45de-a81a-ef7462289b29",
+        "@id": "urn:0bb1792b-9b25-46e4-b72e-c2be6f624712",
         "Label": "Threshold",
         "Used": [
-          "urn:ceae3128-1252-410b-ae1e-bdbdf0bfc9db"
+          "urn:5ecaa27a-d8dc-48bf-acb6-e3c9283ad0b8"
         ],
-        "AssociatedWith": "urn:86ad9869-3e33-4e42-bd8f-b9b8e8f7a3a2",
+        "AssociatedWith": "urn:64836f0e-e8b3-40d6-9247-a8e347c4ccdc",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:6cdc1962-95fb-4726-8f99-e6a217f57a15",
+        "@id": "urn:360c6e24-8ef1-4e78-a20c-4f1e6ebabc67",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:48b63383-ce45-404f-bda1-96168e337b80",
+        "@id": "urn:96d45e7e-9830-4d18-bab2-b0968b5f6d40",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:d2ef3f1c-c063-440e-b174-047af4076a07",
+        "@id": "urn:8e3dccf2-4041-43a7-ae8e-c6693ee12610",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:b10473eb-5f57-4126-b12a-75a8302c7d6c"
+        "GeneratedBy": "urn:6a389401-d37b-4c0e-89e2-a748ed2a46af"
       },
       {
-        "@id": "urn:23a1709c-98bd-4406-a568-7599a5950947",
+        "@id": "urn:4405e61e-5f17-478e-8619-f860c4f23e39",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:4126e001-b2b1-4b12-a084-2ed8afbd3271"
+        "GeneratedBy": "urn:0132a039-6f29-43c3-95e5-c1f46d2f6919"
       },
       {
-        "@id": "urn:5cef23cf-7cd9-4210-990e-6e91f48dbd73",
+        "@id": "urn:03d5f94b-379d-43ba-82a1-346e22e37619",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:0af45bce-46c7-418d-90aa-c60de084ad56"
+        "GeneratedBy": "urn:e7fa77d8-7c17-453f-bf44-06a83aa361fb"
       },
       {
-        "@id": "urn:ed9cf935-b21a-42ec-a454-ee7dd58818f4",
+        "@id": "urn:8270d8d8-058e-45d1-bcc6-2073d90606e5",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:c4baf3df-0ef1-46a1-837c-11aa62fc7a4e"
+        "GeneratedBy": "urn:1d237c07-a52d-4a05-81d5-bbabc95bf4d5"
       },
       {
-        "@id": "urn:ba3146d8-e52f-45f1-a1a4-a2af80050930",
+        "@id": "urn:2420bc5d-17a3-48d3-9182-fcca102bd8bf",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:70f2b950-1da8-47bd-9a74-7baa69660fbe"
+        "GeneratedBy": "urn:35351fd9-63f9-465b-8b5f-9d5214224587"
       },
       {
-        "@id": "urn:1807e023-7810-4c8a-ba7e-62ac784fe919",
+        "@id": "urn:f4931a39-0143-4666-b2d0-ea5a028c7585",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:98e35494-b413-4218-b09a-4736ca2f5580",
+        "GeneratedBy": "urn:d5c97dfd-bc9a-4c8f-bd4f-fa5162003600",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:ab106e53-c496-4951-ad6d-145f6d4d938a",
+        "@id": "urn:53cb7ce5-86d5-486f-b549-3d7bc5744529",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:98e35494-b413-4218-b09a-4736ca2f5580",
+        "GeneratedBy": "urn:d5c97dfd-bc9a-4c8f-bd4f-fa5162003600",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:7acc757f-48c5-4675-a39b-3733beca8099",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:b87ce270-a7b7-4db0-b9ea-1be043aad9f5"
+        "@id": "urn:d2d3e2a4-d1c8-4526-981d-515d6e512abc",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:1bea0f51-9adc-43ee-8606-9199fe51d37c"
       },
       {
-        "@id": "urn:52c1a8e5-c14b-48df-8a80-29367b081e4e",
+        "@id": "urn:76cf5f17-a795-4078-8068-c9e841f985ec",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:91024a06-af86-4fb0-afa9-ebe7bfd999e1",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:312d6e00-b598-48e6-a211-aa787cc0f427"
+        "@id": "urn:f3d0fe4f-37ea-4f4c-a67b-d761a2d2c64e",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:06099155-3078-41fa-b2dd-38b491373a17"
       },
       {
-        "@id": "urn:28a1f753-74e8-465e-9ba7-0723531947f6",
+        "@id": "urn:c6e14ecb-e59d-4623-9d39-1adedd84a242",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:d6a584e7-0498-400e-8978-13fa03639d6d"
+        "GeneratedBy": "urn:b38636c2-8db1-4744-9952-28a75ff3368d"
       },
       {
-        "@id": "urn:46c30a98-36d1-480e-b0a6-e9e7d245f814",
+        "@id": "urn:fbee7fb9-d4f2-4e42-a7f6-b373c25c08be",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:3b4e7ef1-b31c-4fb3-ae81-90f628678f4b"
+        "GeneratedBy": "urn:5930e704-0004-4552-aea9-a0eeceb4c5fd"
       },
       {
-        "@id": "urn:ceae3128-1252-410b-ae1e-bdbdf0bfc9db",
+        "@id": "urn:5ecaa27a-d8dc-48bf-acb6-e3c9283ad0b8",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:aab7e482-df3a-4613-8609-1527e33b0cfa"
+        "GeneratedBy": "urn:d1ae6edb-eb2d-4090-8a91-27b487473beb"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_con_f_batch.jsonld b/examples/from_parsers/spm/spm_con_f_batch.jsonld
index f6d72c1ff..dcbb0137d 100644
--- a/examples/from_parsers/spm/spm_con_f_batch.jsonld
+++ b/examples/from_parsers/spm/spm_con_f_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "@id": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:e5c7fec3-13ac-43b2-b147-e6c89efc06ad",
+        "@id": "urn:9ab5110c-2de7-4074-8985-e7f7624951ff",
         "Label": "Move file",
         "Used": [
-          "urn:b53afaae-06e1-49f4-a9ef-f5b4ee03da6b"
+          "urn:3a4ffa60-001e-4864-aabd-3fa1bda050cb"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:213ba206-6549-42b3-90f5-5dbaa5443c31",
+        "@id": "urn:a795b30c-e2ac-4510-8f49-b5d49d5a2666",
         "Label": "Move file",
         "Used": [
-          "urn:0105302f-6dee-4f56-b390-8f4c7b70f68b"
+          "urn:73f49fa2-a12e-4869-9bfd-c898044cd642"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:43302e4a-2df7-4b56-ba7c-61f14009fe14",
+        "@id": "urn:1ee7bfb1-a896-4325-bde8-0aee923af16e",
         "Label": "Gunzip",
         "Used": [
-          "urn:73ac48b8-1ba7-42d9-b8a3-86ad316270d6"
+          "urn:28f3ad86-7bbc-4bad-935d-7d4416682ba1"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:482a00bc-4f3f-4866-adff-1ca4914f0f9c",
+        "@id": "urn:9bbaf345-c3e8-47fd-a68f-a115deca9946",
         "Label": "Gunzip",
         "Used": [
-          "urn:82368305-14a5-444d-9f57-a96589e51937"
+          "urn:b431f690-cccb-41b1-9946-d52280b64525"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:afd3d158-c888-4146-81cc-da7a53e3cd8c",
+        "@id": "urn:66df70be-6cf3-4590-b1fe-898c0378e681",
         "Label": "Realign",
         "Used": [
-          "urn:6facd168-6205-4eab-902a-051b05e0d300"
+          "urn:a9ebcc48-ff9b-43ff-a6e2-e563f373103c"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:7eeace10-a018-45b9-b882-514a0a878de0",
+        "@id": "urn:b256c6cc-10b0-4f1b-a9a6-4fedf605381c",
         "Label": "Coregister",
         "Used": [
-          "urn:3a2f1b8e-942c-4178-8f58-491c55c796a7",
-          "urn:0840ffaf-344d-4b50-b9b5-1a4dd76fe080"
+          "urn:3712e048-0291-4277-83db-2089489d7987",
+          "urn:76e92e1e-d7b6-44bc-ba6f-020b033a4523"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:bf820444-ae9b-4433-98a7-a11014b56ea1",
+        "@id": "urn:c490c359-1750-4d0e-9787-223cd2eb9efa",
         "Label": "Segment",
         "Used": [
-          "urn:0840ffaf-344d-4b50-b9b5-1a4dd76fe080"
+          "urn:76e92e1e-d7b6-44bc-ba6f-020b033a4523"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:a2ee4c90-f39a-4adc-accc-81bfff2a3fd8",
+        "@id": "urn:3fe69852-da91-41b2-b340-855464860260",
         "Label": "Normalize",
         "Used": [
-          "urn:d227a590-b746-4e62-a756-06959e2f290e",
-          "urn:3a2f1b8e-942c-4178-8f58-491c55c796a7"
+          "urn:3712e048-0291-4277-83db-2089489d7987",
+          "urn:682b3ad7-d506-48e4-924b-4aebb0a78f3c"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:e3d5fbf7-1cdd-4e89-9624-deff08bbf4da",
+        "@id": "urn:17d2cc88-4bae-4444-9530-b8c84f76341b",
         "Label": "Normalize",
         "Used": [
-          "urn:d227a590-b746-4e62-a756-06959e2f290e",
-          "urn:d227a590-b746-4e62-a756-06959e2f290e"
+          "urn:682b3ad7-d506-48e4-924b-4aebb0a78f3c"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:42579cc8-6d6b-44d4-bbb5-b30f3f880bfc",
+        "@id": "urn:4c93db26-2d28-4a0a-ae59-ad5223a53e78",
         "Label": "Smooth",
         "Used": [
-          "urn:65ac2267-948b-4892-afd1-d931dd616401"
+          "urn:f2a705dd-336d-40f8-bccc-2e62a0d1defb"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:df70a01a-6213-44d8-b679-676dd6bfb129",
+        "@id": "urn:e4f4fc74-1ff9-4ecb-b55d-1dbdc28d771a",
         "Label": "Stat Design",
         "Used": [
-          "urn:db70a010-5f90-48af-8c31-6be63a2c5d14",
-          "urn:68abc2b5-cfec-4264-a5a5-0cbb68a2f80b"
+          "urn:f8600926-68f6-46c9-bf0e-93641c333839",
+          "urn:5e9a57b8-7d11-4db6-b1f9-8dea85ffd7de"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_f_test'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_f_test'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:d3bbe5ef-0da2-4c47-bf61-d804b9ebc44b",
+        "@id": "urn:ead1b8a3-9a6c-4821-b8b5-c47b5913f8b4",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:17be67dd-6c13-4769-b68a-36e4a40852c4"
+          "urn:ab7c113a-12d1-4e0a-b4bf-bb15c9087274"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:096d8684-8199-4280-a7bc-f65d3a6f63cd",
+        "@id": "urn:92942894-91d4-46da-a851-212428e5ffd6",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:2f1d7d43-4b07-48b9-8496-eebbf76893b0"
+          "urn:8f37612b-f99e-4cbe-8b56-6eec4e0cb0a5"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.fcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.fcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.fcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.fcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:208141cb-d264-4585-803c-add159a34691",
+        "@id": "urn:13201da7-d050-4ca2-bee2-a1986bb0104d",
         "Label": "Threshold",
         "Used": [
-          "urn:a54a7195-0af3-4b2e-bfaf-3740a677b53b"
+          "urn:82715994-f108-4d17-ba20-8b5e1fe14ac3"
         ],
-        "AssociatedWith": "urn:65fc9308-a754-4214-9ca2-53d26cab2a5f",
+        "AssociatedWith": "urn:13a4d608-cdc4-4bb7-913a-ef1580a4804d",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:b53afaae-06e1-49f4-a9ef-f5b4ee03da6b",
+        "@id": "urn:3a4ffa60-001e-4864-aabd-3fa1bda050cb",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:0105302f-6dee-4f56-b390-8f4c7b70f68b",
+        "@id": "urn:73f49fa2-a12e-4869-9bfd-c898044cd642",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:73ac48b8-1ba7-42d9-b8a3-86ad316270d6",
+        "@id": "urn:28f3ad86-7bbc-4bad-935d-7d4416682ba1",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:e5c7fec3-13ac-43b2-b147-e6c89efc06ad"
+        "GeneratedBy": "urn:9ab5110c-2de7-4074-8985-e7f7624951ff"
       },
       {
-        "@id": "urn:82368305-14a5-444d-9f57-a96589e51937",
+        "@id": "urn:b431f690-cccb-41b1-9946-d52280b64525",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:213ba206-6549-42b3-90f5-5dbaa5443c31"
+        "GeneratedBy": "urn:a795b30c-e2ac-4510-8f49-b5d49d5a2666"
       },
       {
-        "@id": "urn:6facd168-6205-4eab-902a-051b05e0d300",
+        "@id": "urn:a9ebcc48-ff9b-43ff-a6e2-e563f373103c",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:43302e4a-2df7-4b56-ba7c-61f14009fe14"
+        "GeneratedBy": "urn:1ee7bfb1-a896-4325-bde8-0aee923af16e"
       },
       {
-        "@id": "urn:3a2f1b8e-942c-4178-8f58-491c55c796a7",
+        "@id": "urn:3712e048-0291-4277-83db-2089489d7987",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:afd3d158-c888-4146-81cc-da7a53e3cd8c"
+        "GeneratedBy": "urn:66df70be-6cf3-4590-b1fe-898c0378e681"
       },
       {
-        "@id": "urn:0840ffaf-344d-4b50-b9b5-1a4dd76fe080",
+        "@id": "urn:76e92e1e-d7b6-44bc-ba6f-020b033a4523",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:482a00bc-4f3f-4866-adff-1ca4914f0f9c"
+        "GeneratedBy": "urn:9bbaf345-c3e8-47fd-a68f-a115deca9946"
       },
       {
-        "@id": "urn:d227a590-b746-4e62-a756-06959e2f290e",
+        "@id": "urn:682b3ad7-d506-48e4-924b-4aebb0a78f3c",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:bf820444-ae9b-4433-98a7-a11014b56ea1",
+        "GeneratedBy": "urn:c490c359-1750-4d0e-9787-223cd2eb9efa",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:fa9c14f8-dc0e-4bf6-a4c1-efa702904c63",
+        "@id": "urn:e55cc102-2c9b-412f-872d-4338f24b718f",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:bf820444-ae9b-4433-98a7-a11014b56ea1",
+        "GeneratedBy": "urn:c490c359-1750-4d0e-9787-223cd2eb9efa",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:65ac2267-948b-4892-afd1-d931dd616401",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:a2ee4c90-f39a-4adc-accc-81bfff2a3fd8"
+        "@id": "urn:f2a705dd-336d-40f8-bccc-2e62a0d1defb",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:3fe69852-da91-41b2-b340-855464860260"
       },
       {
-        "@id": "urn:68abc2b5-cfec-4264-a5a5-0cbb68a2f80b",
+        "@id": "urn:5e9a57b8-7d11-4db6-b1f9-8dea85ffd7de",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:db70a010-5f90-48af-8c31-6be63a2c5d14",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:42579cc8-6d6b-44d4-bbb5-b30f3f880bfc"
+        "@id": "urn:f8600926-68f6-46c9-bf0e-93641c333839",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:4c93db26-2d28-4a0a-ae59-ad5223a53e78"
       },
       {
-        "@id": "urn:17be67dd-6c13-4769-b68a-36e4a40852c4",
+        "@id": "urn:ab7c113a-12d1-4e0a-b4bf-bb15c9087274",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:df70a01a-6213-44d8-b679-676dd6bfb129"
+        "GeneratedBy": "urn:e4f4fc74-1ff9-4ecb-b55d-1dbdc28d771a"
       },
       {
-        "@id": "urn:2f1d7d43-4b07-48b9-8496-eebbf76893b0",
+        "@id": "urn:8f37612b-f99e-4cbe-8b56-6eec4e0cb0a5",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:d3bbe5ef-0da2-4c47-bf61-d804b9ebc44b"
+        "GeneratedBy": "urn:ead1b8a3-9a6c-4821-b8b5-c47b5913f8b4"
       },
       {
-        "@id": "urn:a54a7195-0af3-4b2e-bfaf-3740a677b53b",
+        "@id": "urn:82715994-f108-4d17-ba20-8b5e1fe14ac3",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:096d8684-8199-4280-a7bc-f65d3a6f63cd"
+        "GeneratedBy": "urn:92942894-91d4-46da-a851-212428e5ffd6"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_conjunction_batch.jsonld b/examples/from_parsers/spm/spm_conjunction_batch.jsonld
index cab38886a..b91956ef2 100644
--- a/examples/from_parsers/spm/spm_conjunction_batch.jsonld
+++ b/examples/from_parsers/spm/spm_conjunction_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "@id": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:5962072c-3aa9-4ad6-8cfc-4c74e34f8a37",
+        "@id": "urn:305ec05b-5014-44e6-984a-2ea39883ade6",
         "Label": "Move file",
         "Used": [
-          "urn:f331d7b0-b7cc-4c87-8b65-f0e4c60b537e"
+          "urn:fa8342fe-9330-4fbe-8c69-740405630269"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:f1285616-769b-4a07-ba5b-dd3b362ceada",
+        "@id": "urn:8f20272a-5850-41f9-8c75-e24c8dcb1a93",
         "Label": "Move file",
         "Used": [
-          "urn:6fceeca3-6d78-41c5-80ac-ea5d354ca5da"
+          "urn:8b0df28d-d3ef-4a15-9789-745572110d2a"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:98ebaab6-284c-4ed9-81f5-80dc6ca214f6",
+        "@id": "urn:f1ae068f-bd6c-4f5e-990f-bc158d798aa4",
         "Label": "Gunzip",
         "Used": [
-          "urn:891c9e64-aa58-40ac-ab51-a4591ef98f3d"
+          "urn:efbf63f3-1453-44d7-943f-5ad271b15594"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:270a76ce-b814-4930-826d-b1c1c5552362",
+        "@id": "urn:1ab1395a-bd77-4c9c-97e0-6e01726808ce",
         "Label": "Gunzip",
         "Used": [
-          "urn:d4ae7eed-f7a0-4b2c-8e95-497986952c6e"
+          "urn:9c1ff056-0888-4199-b1a4-4c11252dcc8f"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:9d6c6089-8121-4895-81e9-6f6976a1fc2b",
+        "@id": "urn:8d19bcea-aa4e-45f1-9578-7d62a781c5d9",
         "Label": "Realign",
         "Used": [
-          "urn:30f8dc27-4be2-4901-8212-43ecedfa201c"
+          "urn:3474c8cd-db1d-499b-a758-30039fb6ad37"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:a527361f-8681-462e-9c4f-50044857e218",
+        "@id": "urn:f10a5ad8-0374-4fc2-ad92-70ddf88959c8",
         "Label": "Coregister",
         "Used": [
-          "urn:438c9f67-4c05-49df-bc1d-5321f4d5e6d4",
-          "urn:7c57d1e6-17d3-4065-b67f-a0b772510c9c"
+          "urn:714cd3ec-0190-4792-93f3-8c566734b8a4",
+          "urn:c66ec06e-eab2-4719-91c5-e81f8f54c33f"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:1ab57373-008c-4185-a4a0-b4055817c834",
+        "@id": "urn:9dce6e79-71ef-43e8-997d-4841605ad7c3",
         "Label": "Segment",
         "Used": [
-          "urn:7c57d1e6-17d3-4065-b67f-a0b772510c9c"
+          "urn:c66ec06e-eab2-4719-91c5-e81f8f54c33f"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:58190496-d361-4a3b-b643-956ca8ba66ac",
+        "@id": "urn:67c1a9ac-c5ad-4a62-9f8c-1bc385fbd286",
         "Label": "Normalize",
         "Used": [
-          "urn:ee7e472a-0fd8-46e5-84aa-d9c56df36337",
-          "urn:438c9f67-4c05-49df-bc1d-5321f4d5e6d4"
+          "urn:714cd3ec-0190-4792-93f3-8c566734b8a4",
+          "urn:fb5b492a-60c2-449b-8413-fd136b506cd7"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:c7c86089-eaa4-4a18-8530-49a201b46d44",
+        "@id": "urn:3fd6b10a-ad16-41ce-987c-d9b67e25d95e",
         "Label": "Normalize",
         "Used": [
-          "urn:ee7e472a-0fd8-46e5-84aa-d9c56df36337",
-          "urn:ee7e472a-0fd8-46e5-84aa-d9c56df36337"
+          "urn:fb5b492a-60c2-449b-8413-fd136b506cd7"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:c2d998a1-f944-487f-852a-87a2d18c487e",
+        "@id": "urn:0723034d-fc73-4fc4-9deb-605b9add0ee7",
         "Label": "Smooth",
         "Used": [
-          "urn:2b9183d0-77d0-46b0-bf37-9194a53c9e30"
+          "urn:9f72ed22-2e83-4615-b7d0-34dd51fb3a97"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2",
+        "@id": "urn:0134c831-73b9-47b6-80a6-41535abaf825",
         "Label": "Stat Design",
         "Used": [
-          "urn:f9926a23-da1b-4676-8f18-6402e78b4e66",
-          "urn:90006fda-2974-4e85-8721-5d30689854db"
+          "urn:64b3106f-d986-42e5-bea5-ad79de7eed00",
+          "urn:e648781f-7a62-4523-8c8c-24cc9bfea61a"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_partial_conjunction'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_partial_conjunction'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5",
+        "@id": "urn:086568a2-e38c-44a5-ac87-7bbb46fb1215",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:60ac6427-f2f9-4df8-b0a4-2e52279ea854"
+          "urn:76f8224d-55bf-46a5-bc7f-2973c300c08f"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:86b7f4b4-4cd2-4ebe-b137-bfd68b16e015",
+        "@id": "urn:8ae4d11f-5d8d-474d-b00b-f7e5c882df15",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:5c807607-6449-4770-b25b-5e78dc0d69c7"
+          "urn:9f26b129-9763-4b04-860e-3f44465c99ad"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.name = 'tone counting probe vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.weights = [0 1];\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -246,12 +245,12 @@
         }
       },
       {
-        "@id": "urn:3256a338-3396-4916-bb29-dc788cf16b91",
+        "@id": "urn:b5d49317-69e9-4232-b911-58eab6897675",
         "Label": "Threshold",
         "Used": [
-          "urn:ef4136f0-99bb-4107-ab16-e576bfffbdd3"
+          "urn:91ccbfe0-c5ec-43f2-92a1-79ae778813a9"
         ],
-        "AssociatedWith": "urn:f784bdfe-fd74-4b3d-87ad-3937aaec861c",
+        "AssociatedWith": "urn:22e1f72a-aab4-4f7e-a6f5-e198f6c0ceff",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = [1 2];\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -269,7 +268,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:f331d7b0-b7cc-4c87-8b65-f0e4c60b537e",
+        "@id": "urn:fa8342fe-9330-4fbe-8c69-740405630269",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -277,7 +276,7 @@
         }
       },
       {
-        "@id": "urn:6fceeca3-6d78-41c5-80ac-ea5d354ca5da",
+        "@id": "urn:8b0df28d-d3ef-4a15-9789-745572110d2a",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -285,57 +284,57 @@
         }
       },
       {
-        "@id": "urn:891c9e64-aa58-40ac-ab51-a4591ef98f3d",
+        "@id": "urn:efbf63f3-1453-44d7-943f-5ad271b15594",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:5962072c-3aa9-4ad6-8cfc-4c74e34f8a37"
+        "GeneratedBy": "urn:305ec05b-5014-44e6-984a-2ea39883ade6"
       },
       {
-        "@id": "urn:d4ae7eed-f7a0-4b2c-8e95-497986952c6e",
+        "@id": "urn:9c1ff056-0888-4199-b1a4-4c11252dcc8f",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:f1285616-769b-4a07-ba5b-dd3b362ceada"
+        "GeneratedBy": "urn:8f20272a-5850-41f9-8c75-e24c8dcb1a93"
       },
       {
-        "@id": "urn:30f8dc27-4be2-4901-8212-43ecedfa201c",
+        "@id": "urn:3474c8cd-db1d-499b-a758-30039fb6ad37",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:98ebaab6-284c-4ed9-81f5-80dc6ca214f6"
+        "GeneratedBy": "urn:f1ae068f-bd6c-4f5e-990f-bc158d798aa4"
       },
       {
-        "@id": "urn:438c9f67-4c05-49df-bc1d-5321f4d5e6d4",
+        "@id": "urn:714cd3ec-0190-4792-93f3-8c566734b8a4",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:9d6c6089-8121-4895-81e9-6f6976a1fc2b"
+        "GeneratedBy": "urn:8d19bcea-aa4e-45f1-9578-7d62a781c5d9"
       },
       {
-        "@id": "urn:7c57d1e6-17d3-4065-b67f-a0b772510c9c",
+        "@id": "urn:c66ec06e-eab2-4719-91c5-e81f8f54c33f",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:270a76ce-b814-4930-826d-b1c1c5552362"
+        "GeneratedBy": "urn:1ab1395a-bd77-4c9c-97e0-6e01726808ce"
       },
       {
-        "@id": "urn:ee7e472a-0fd8-46e5-84aa-d9c56df36337",
+        "@id": "urn:fb5b492a-60c2-449b-8413-fd136b506cd7",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:1ab57373-008c-4185-a4a0-b4055817c834",
+        "GeneratedBy": "urn:9dce6e79-71ef-43e8-997d-4841605ad7c3",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:487f22ab-a209-405c-85b8-4b657cbbcb10",
+        "@id": "urn:f1ebdf2e-24f8-49fd-8cf4-c135b087159d",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:1ab57373-008c-4185-a4a0-b4055817c834",
+        "GeneratedBy": "urn:9dce6e79-71ef-43e8-997d-4841605ad7c3",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:2b9183d0-77d0-46b0-bf37-9194a53c9e30",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:58190496-d361-4a3b-b643-956ca8ba66ac"
+        "@id": "urn:9f72ed22-2e83-4615-b7d0-34dd51fb3a97",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:67c1a9ac-c5ad-4a62-9f8c-1bc385fbd286"
       },
       {
-        "@id": "urn:90006fda-2974-4e85-8721-5d30689854db",
+        "@id": "urn:e648781f-7a62-4523-8c8c-24cc9bfea61a",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -343,24 +342,24 @@
         }
       },
       {
-        "@id": "urn:f9926a23-da1b-4676-8f18-6402e78b4e66",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:c2d998a1-f944-487f-852a-87a2d18c487e"
+        "@id": "urn:64b3106f-d986-42e5-bea5-ad79de7eed00",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:0723034d-fc73-4fc4-9deb-605b9add0ee7"
       },
       {
-        "@id": "urn:60ac6427-f2f9-4df8-b0a4-2e52279ea854",
+        "@id": "urn:76f8224d-55bf-46a5-bc7f-2973c300c08f",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:c1dbe336-6adc-43f6-beda-b35ac0809ea2"
+        "GeneratedBy": "urn:0134c831-73b9-47b6-80a6-41535abaf825"
       },
       {
-        "@id": "urn:5c807607-6449-4770-b25b-5e78dc0d69c7",
+        "@id": "urn:9f26b129-9763-4b04-860e-3f44465c99ad",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:a1f58e1e-f61b-487b-8cce-219b0d8ca7c5"
+        "GeneratedBy": "urn:086568a2-e38c-44a5-ac87-7bbb46fb1215"
       },
       {
-        "@id": "urn:ef4136f0-99bb-4107-ab16-e576bfffbdd3",
+        "@id": "urn:91ccbfe0-c5ec-43f2-92a1-79ae778813a9",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:86b7f4b4-4cd2-4ebe-b137-bfd68b16e015"
+        "GeneratedBy": "urn:8ae4d11f-5d8d-474d-b00b-f7e5c882df15"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_contrast_mask_batch.jsonld b/examples/from_parsers/spm/spm_contrast_mask_batch.jsonld
index 557a7310e..53d127a0b 100644
--- a/examples/from_parsers/spm/spm_contrast_mask_batch.jsonld
+++ b/examples/from_parsers/spm/spm_contrast_mask_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "@id": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:55edab04-2d8f-4fad-93b5-f00b8c4b1551",
+        "@id": "urn:644ce011-3d1e-4984-ad9c-f5771f000747",
         "Label": "Move file",
         "Used": [
-          "urn:3881f671-7091-4f65-ab4a-d62e230af38e"
+          "urn:beaf7a4a-26f6-4baf-a898-33fed1de6dd1"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:11ba212b-96f7-4c06-975e-5e3f33400f89",
+        "@id": "urn:aec7fb9b-2ee8-4f2d-b523-9da2972acaab",
         "Label": "Move file",
         "Used": [
-          "urn:611642a2-088a-4b7e-b2e8-65eab6f3b9a3"
+          "urn:20343da6-1dbe-4abe-861a-b3c8749af810"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:4c0d5d0d-40d3-411d-bdef-a620fad879ed",
+        "@id": "urn:a5959023-1022-4359-806f-b2d2fa6bce85",
         "Label": "Gunzip",
         "Used": [
-          "urn:3529902d-6458-4e64-a6a8-9357e04e5587"
+          "urn:32250610-6808-46b2-8175-f03e3be56a9a"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:085a4987-65f9-4842-bea9-60b04382d7ff",
+        "@id": "urn:0daa00f1-fd07-4481-a724-16ce22dd13cf",
         "Label": "Gunzip",
         "Used": [
-          "urn:2e84766b-f6b6-4e5a-8853-b27071e11e03"
+          "urn:75d1ea2b-1272-4eb8-aad1-cb8e455ce9f0"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:c16c40fe-a46b-4a0c-b7f0-66e09b55fce4",
+        "@id": "urn:b9d00692-dc98-4bf8-b0e2-d7c35a873be5",
         "Label": "Realign",
         "Used": [
-          "urn:97096464-2437-45a3-bc36-c0803de60898"
+          "urn:1b96acb1-26b2-42db-a786-caf863b571e7"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:6f8efe1e-6e80-45f3-a30f-e770c90dc04b",
+        "@id": "urn:72e8ec45-e14e-4035-b432-ccb27ed7ab2f",
         "Label": "Coregister",
         "Used": [
-          "urn:23dee5cc-e5e2-4b05-bb2e-499cb3caf1c4",
-          "urn:a5e54cc0-c748-449e-9d2b-66e126287db3"
+          "urn:b4269c4f-f3a9-4fde-ba7c-9e73f98efa77",
+          "urn:ff2dd0ff-ce32-4d9d-aac4-3af1f285e5ba"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:560a7372-548e-42fa-921d-24259ff5eb0c",
+        "@id": "urn:1f63bf46-8dde-4d8f-8199-b6b9ea05798c",
         "Label": "Segment",
         "Used": [
-          "urn:a5e54cc0-c748-449e-9d2b-66e126287db3"
+          "urn:ff2dd0ff-ce32-4d9d-aac4-3af1f285e5ba"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:f94e103c-66d5-4680-b4e6-f5f7c734c9fd",
+        "@id": "urn:4d4a2763-06ec-4da4-91fc-e50f4ef7373d",
         "Label": "Normalize",
         "Used": [
-          "urn:bce53a79-dc25-46e4-83ed-c469956ade7b",
-          "urn:23dee5cc-e5e2-4b05-bb2e-499cb3caf1c4"
+          "urn:b4269c4f-f3a9-4fde-ba7c-9e73f98efa77",
+          "urn:dcbb3e88-d6dd-4ce7-81f0-f836944dfb88"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:d5d2f4ac-1c68-4e7a-9256-4caccf23d9b1",
+        "@id": "urn:712dbdb6-fac4-47f8-bb62-8b88c2a43a94",
         "Label": "Normalize",
         "Used": [
-          "urn:bce53a79-dc25-46e4-83ed-c469956ade7b",
-          "urn:bce53a79-dc25-46e4-83ed-c469956ade7b"
+          "urn:dcbb3e88-d6dd-4ce7-81f0-f836944dfb88"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:6ed758a4-a952-4c72-8d80-3b26c317be7a",
+        "@id": "urn:ed09bfc0-4e0f-4033-bdc5-2697ab125380",
         "Label": "Smooth",
         "Used": [
-          "urn:4a5dea9f-6bdf-4711-9173-e4b12cde29a0"
+          "urn:8482b2ed-8b32-48db-8ea7-3d86c6427ac2"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:0eb0f6b1-0ccb-4560-ac74-fe45af46a58e",
+        "@id": "urn:558037a1-cb9f-4066-92ce-2310858450e1",
         "Label": "Stat Design",
         "Used": [
-          "urn:a79bff62-4ee1-4d65-98da-116a57aa3f55",
-          "urn:835bafaa-c616-48e8-b40d-7fb9d3c2d3a3"
+          "urn:3ee13e32-1c59-4bee-b8d6-3486ed62edbb",
+          "urn:e12b1d9b-dced-4e3a-923b-d879b6c3d501"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_contrast_mask'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_contrast_mask'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:a18588f4-df77-4829-8460-3556c295d412",
+        "@id": "urn:befcb32b-1565-4ced-83d3-a9528d221226",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:c75f3793-ca85-4574-8a96-672272ecca70"
+          "urn:327caea3-5cef-4821-a4fe-f2306d78ad61"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:b0a3cb2e-f8c9-4140-bb6e-375dbe8a71f3",
+        "@id": "urn:8f8f67e0-f527-4ed5-b657-afd90db8078b",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:ebca06a5-6084-4d81-90c4-3a4f6991a90d"
+          "urn:d7fe2c97-549c-4ea7-973e-9928f6e71901"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.name = 'tone counting probe vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.weights = [0 1];\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -246,12 +245,12 @@
         }
       },
       {
-        "@id": "urn:14e6bb01-26e9-4060-98c5-b0a23501fba5",
+        "@id": "urn:36bfbdaa-5cb9-4458-a584-6dd5dcfdfbce",
         "Label": "Threshold",
         "Used": [
-          "urn:57c85ca9-05dd-4f03-b0ea-a6f28b13b1d9"
+          "urn:97a8160f-bb2a-462b-817e-8fea22ad5497"
         ],
-        "AssociatedWith": "urn:816004d4-9b13-493f-998d-3f296343dadc",
+        "AssociatedWith": "urn:6d2a953f-fdaf-4c5a-a514-5012e2683234",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = 1;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.contrast.contrasts = 2;\nmatlabbatch{14}.spm.stats.results.conspec.mask.contrast.thresh = 0.05;\nmatlabbatch{14}.spm.stats.results.conspec.mask.contrast.mtype = 0;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -271,7 +270,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:3881f671-7091-4f65-ab4a-d62e230af38e",
+        "@id": "urn:beaf7a4a-26f6-4baf-a898-33fed1de6dd1",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -279,7 +278,7 @@
         }
       },
       {
-        "@id": "urn:611642a2-088a-4b7e-b2e8-65eab6f3b9a3",
+        "@id": "urn:20343da6-1dbe-4abe-861a-b3c8749af810",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -287,57 +286,57 @@
         }
       },
       {
-        "@id": "urn:3529902d-6458-4e64-a6a8-9357e04e5587",
+        "@id": "urn:32250610-6808-46b2-8175-f03e3be56a9a",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:55edab04-2d8f-4fad-93b5-f00b8c4b1551"
+        "GeneratedBy": "urn:644ce011-3d1e-4984-ad9c-f5771f000747"
       },
       {
-        "@id": "urn:2e84766b-f6b6-4e5a-8853-b27071e11e03",
+        "@id": "urn:75d1ea2b-1272-4eb8-aad1-cb8e455ce9f0",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:11ba212b-96f7-4c06-975e-5e3f33400f89"
+        "GeneratedBy": "urn:aec7fb9b-2ee8-4f2d-b523-9da2972acaab"
       },
       {
-        "@id": "urn:97096464-2437-45a3-bc36-c0803de60898",
+        "@id": "urn:1b96acb1-26b2-42db-a786-caf863b571e7",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:4c0d5d0d-40d3-411d-bdef-a620fad879ed"
+        "GeneratedBy": "urn:a5959023-1022-4359-806f-b2d2fa6bce85"
       },
       {
-        "@id": "urn:23dee5cc-e5e2-4b05-bb2e-499cb3caf1c4",
+        "@id": "urn:b4269c4f-f3a9-4fde-ba7c-9e73f98efa77",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:c16c40fe-a46b-4a0c-b7f0-66e09b55fce4"
+        "GeneratedBy": "urn:b9d00692-dc98-4bf8-b0e2-d7c35a873be5"
       },
       {
-        "@id": "urn:a5e54cc0-c748-449e-9d2b-66e126287db3",
+        "@id": "urn:ff2dd0ff-ce32-4d9d-aac4-3af1f285e5ba",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:085a4987-65f9-4842-bea9-60b04382d7ff"
+        "GeneratedBy": "urn:0daa00f1-fd07-4481-a724-16ce22dd13cf"
       },
       {
-        "@id": "urn:bce53a79-dc25-46e4-83ed-c469956ade7b",
+        "@id": "urn:dcbb3e88-d6dd-4ce7-81f0-f836944dfb88",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:560a7372-548e-42fa-921d-24259ff5eb0c",
+        "GeneratedBy": "urn:1f63bf46-8dde-4d8f-8199-b6b9ea05798c",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:3da4d702-a202-4bac-b707-054550bce11c",
+        "@id": "urn:162b1d46-bf30-462d-be37-9e63f1bbdc34",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:560a7372-548e-42fa-921d-24259ff5eb0c",
+        "GeneratedBy": "urn:1f63bf46-8dde-4d8f-8199-b6b9ea05798c",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:4a5dea9f-6bdf-4711-9173-e4b12cde29a0",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:f94e103c-66d5-4680-b4e6-f5f7c734c9fd"
+        "@id": "urn:8482b2ed-8b32-48db-8ea7-3d86c6427ac2",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:4d4a2763-06ec-4da4-91fc-e50f4ef7373d"
       },
       {
-        "@id": "urn:835bafaa-c616-48e8-b40d-7fb9d3c2d3a3",
+        "@id": "urn:e12b1d9b-dced-4e3a-923b-d879b6c3d501",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -345,24 +344,24 @@
         }
       },
       {
-        "@id": "urn:a79bff62-4ee1-4d65-98da-116a57aa3f55",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:6ed758a4-a952-4c72-8d80-3b26c317be7a"
+        "@id": "urn:3ee13e32-1c59-4bee-b8d6-3486ed62edbb",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:ed09bfc0-4e0f-4033-bdc5-2697ab125380"
       },
       {
-        "@id": "urn:c75f3793-ca85-4574-8a96-672272ecca70",
+        "@id": "urn:327caea3-5cef-4821-a4fe-f2306d78ad61",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:0eb0f6b1-0ccb-4560-ac74-fe45af46a58e"
+        "GeneratedBy": "urn:558037a1-cb9f-4066-92ce-2310858450e1"
       },
       {
-        "@id": "urn:ebca06a5-6084-4d81-90c4-3a4f6991a90d",
+        "@id": "urn:d7fe2c97-549c-4ea7-973e-9928f6e71901",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:a18588f4-df77-4829-8460-3556c295d412"
+        "GeneratedBy": "urn:befcb32b-1565-4ced-83d3-a9528d221226"
       },
       {
-        "@id": "urn:57c85ca9-05dd-4f03-b0ea-a6f28b13b1d9",
+        "@id": "urn:97a8160f-bb2a-462b-817e-8fea22ad5497",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:b0a3cb2e-f8c9-4140-bb6e-375dbe8a71f3"
+        "GeneratedBy": "urn:8f8f67e0-f527-4ed5-b657-afd90db8078b"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_covariate_batch.jsonld b/examples/from_parsers/spm/spm_covariate_batch.jsonld
index 108f23ffd..a46c6d948 100644
--- a/examples/from_parsers/spm/spm_covariate_batch.jsonld
+++ b/examples/from_parsers/spm/spm_covariate_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:8b71facf-7122-43cf-b438-a8fe71f1eb30",
+        "@id": "urn:035743bc-1100-484b-94c6-b43764e0cd18",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,24 +13,24 @@
     ],
     "Activities": [
       {
-        "@id": "urn:6845abf4-4f03-4e1e-9fb4-e47350f39fe1",
+        "@id": "urn:7ad4dcb0-cec7-4d82-ab67-1da97d0a6e4e",
         "Label": "stats.factorial_design",
         "Used": [
-          "urn:a1419230-2b3e-4817-b640-05d85bd9dcd1",
-          "urn:74ad9995-210a-4a09-96c1-021ac291fc78",
-          "urn:881e6701-d5f6-4e1d-8b08-b0f422bfc7f7",
-          "urn:2753b48f-12fa-40fc-a095-c4707b8dd571",
-          "urn:c0771e58-a6ad-4067-a247-994db5d57566",
-          "urn:d751aff5-d3ee-485c-be17-647730723212",
-          "urn:0708ea50-1d83-48c9-be2e-3871dfeb2b0a",
-          "urn:c3f9594d-ed7f-4c6d-b18c-c38b41dafd7f",
-          "urn:eb38131d-32b2-4cbf-9b65-bb40b299df05",
-          "urn:842c7ba0-0064-4d8d-8f99-6361ff2599d4",
-          "urn:52511106-bdb5-436c-8f3f-0c0d2edaa139",
-          "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
-          "urn:930d09a1-32c6-4f83-97de-52e2b4e5dd1e"
+          "urn:fe7f40a7-0fb0-4d06-bbd9-2b2eac246769",
+          "urn:9fe42f85-752e-4fee-8973-6463a374f383",
+          "urn:bb39b855-9542-4c73-800c-28d70f33d72f",
+          "urn:a9e915bc-4251-4ce4-aae6-e019c0098d4a",
+          "urn:a3a0a820-1bda-451a-9a7a-8efcde1f9e21",
+          "urn:e3afcce5-5eab-469d-a72b-caa4bf38c61d",
+          "urn:af3a6a6e-ab3b-495f-9d79-975b4fac173b",
+          "urn:b3b270f2-332e-408c-9217-66156ffa79ff",
+          "urn:b3ad7f23-b5b1-495b-bd54-c81324facbbf",
+          "urn:a73f4c88-b010-423c-a66f-891d32b30cc8",
+          "urn:45ff77e8-eb82-4175-80d0-f95a34bedc2d",
+          "urn:fe7823e7-a7a4-4991-8938-14e7d736a233",
+          "urn:7b8a0aed-a199-45c6-9984-691a3b9342b0"
         ],
-        "AssociatedWith": "urn:8b71facf-7122-43cf-b438-a8fe71f1eb30",
+        "AssociatedWith": "urn:035743bc-1100-484b-94c6-b43764e0cd18",
         "Command": "matlabbatch{1}.spm.stats.factorial_design.dir = {'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Group/Con1/Covariate'};\nmatlabbatch{1}.spm.stats.factorial_design.des.t1.scans = {'/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub01/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub02/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub03/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub04/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub05/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub06/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub07/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub08/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub09/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub10/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub11/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub12/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub13/con_0001.nii,1',};\nmatlabbatch{1}.spm.stats.factorial_design.cov.c = [1 2 3 4 5 6 7 8 9 10 11 12 13];\nmatlabbatch{1}.spm.stats.factorial_design.cov.cname = 'Subject ID Covariate';\nmatlabbatch{1}.spm.stats.factorial_design.cov.iCFI = 1;\nmatlabbatch{1}.spm.stats.factorial_design.cov.iCC = 1;\nmatlabbatch{1}.spm.stats.factorial_design.multi_cov = struct('files', {}, 'iCFI', {}, 'iCC', {});\nmatlabbatch{1}.spm.stats.factorial_design.masking.tm.tm_none = 1;\nmatlabbatch{1}.spm.stats.factorial_design.masking.im = 1;\nmatlabbatch{1}.spm.stats.factorial_design.masking.em = {''};\nmatlabbatch{1}.spm.stats.factorial_design.globalc.g_omit = 1;\nmatlabbatch{1}.spm.stats.factorial_design.globalm.gmsca.gmsca_no = 1;\nmatlabbatch{1}.spm.stats.factorial_design.globalm.glonorm = 1;",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Group/Con1/Covariate'}",
@@ -48,12 +48,12 @@
         }
       },
       {
-        "@id": "urn:c2684b63-598f-4f5e-b259-31d0868f9fbd",
+        "@id": "urn:6cc92bfd-ba05-4178-9439-f356bb45800e",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:5c7cbc9b-48c8-44b8-8f20-4487d457e76b"
+          "urn:1b5ca7ef-1b1c-417d-9180-6a48d5f2fcb6"
         ],
-        "AssociatedWith": "urn:8b71facf-7122-43cf-b438-a8fe71f1eb30",
+        "AssociatedWith": "urn:035743bc-1100-484b-94c6-b43764e0cd18",
         "Command": "matlabbatch{2}.spm.stats.fmri_est.spmmat(1) = cfg_dep('Factorial design specification: SPM.mat File', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{2}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{2}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -61,12 +61,12 @@
         }
       },
       {
-        "@id": "urn:9c0f5dac-fd86-459b-b326-320b070d354c",
+        "@id": "urn:5f912f03-d39f-41da-8581-476057afa5b2",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:ac43406f-3117-41a6-b7af-c087a2a0ab63"
+          "urn:e455fbcd-8b0e-476b-964a-230f3fb1f315"
         ],
-        "AssociatedWith": "urn:8b71facf-7122-43cf-b438-a8fe71f1eb30",
+        "AssociatedWith": "urn:035743bc-1100-484b-94c6-b43764e0cd18",
         "Command": "matlabbatch{3}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.name = 'mr vs plain covariate';\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.weights = 1;\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{3}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'mr vs plain covariate'",
@@ -76,12 +76,12 @@
         }
       },
       {
-        "@id": "urn:ffee68b2-1ae4-4e18-b7c4-8b3ea7e3669d",
+        "@id": "urn:1e091424-d3b1-4596-b5e1-2b5167927fa1",
         "Label": "Threshold",
         "Used": [
-          "urn:6aaedc63-f21c-4f7b-81ae-55afae124789"
+          "urn:b591dfe1-e4c6-4e46-9d53-c59c3a00c8bf"
         ],
-        "AssociatedWith": "urn:8b71facf-7122-43cf-b438-a8fe71f1eb30",
+        "AssociatedWith": "urn:035743bc-1100-484b-94c6-b43764e0cd18",
         "Command": "matlabbatch{4}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{4}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{4}.spm.stats.results.conspec.contrasts = 1;\nmatlabbatch{4}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{4}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{4}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{4}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{4}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{4}.spm.stats.results.units = 1;\nmatlabbatch{4}.spm.stats.results.print = 'pdf';\nmatlabbatch{4}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -99,7 +99,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:a1419230-2b3e-4817-b640-05d85bd9dcd1",
+        "@id": "urn:fe7f40a7-0fb0-4d06-bbd9-2b2eac246769",
         "Label": "Sub01_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub01/con_0001.nii",
         "digest": {
@@ -107,7 +107,7 @@
         }
       },
       {
-        "@id": "urn:74ad9995-210a-4a09-96c1-021ac291fc78",
+        "@id": "urn:9fe42f85-752e-4fee-8973-6463a374f383",
         "Label": "Sub02_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub02/con_0001.nii",
         "digest": {
@@ -115,7 +115,7 @@
         }
       },
       {
-        "@id": "urn:881e6701-d5f6-4e1d-8b08-b0f422bfc7f7",
+        "@id": "urn:bb39b855-9542-4c73-800c-28d70f33d72f",
         "Label": "Sub03_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub03/con_0001.nii",
         "digest": {
@@ -123,7 +123,7 @@
         }
       },
       {
-        "@id": "urn:2753b48f-12fa-40fc-a095-c4707b8dd571",
+        "@id": "urn:a9e915bc-4251-4ce4-aae6-e019c0098d4a",
         "Label": "Sub04_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub04/con_0001.nii",
         "digest": {
@@ -131,7 +131,7 @@
         }
       },
       {
-        "@id": "urn:c0771e58-a6ad-4067-a247-994db5d57566",
+        "@id": "urn:a3a0a820-1bda-451a-9a7a-8efcde1f9e21",
         "Label": "Sub05_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub05/con_0001.nii",
         "digest": {
@@ -139,7 +139,7 @@
         }
       },
       {
-        "@id": "urn:d751aff5-d3ee-485c-be17-647730723212",
+        "@id": "urn:e3afcce5-5eab-469d-a72b-caa4bf38c61d",
         "Label": "Sub06_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub06/con_0001.nii",
         "digest": {
@@ -147,7 +147,7 @@
         }
       },
       {
-        "@id": "urn:0708ea50-1d83-48c9-be2e-3871dfeb2b0a",
+        "@id": "urn:af3a6a6e-ab3b-495f-9d79-975b4fac173b",
         "Label": "Sub07_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub07/con_0001.nii",
         "digest": {
@@ -155,7 +155,7 @@
         }
       },
       {
-        "@id": "urn:c3f9594d-ed7f-4c6d-b18c-c38b41dafd7f",
+        "@id": "urn:b3b270f2-332e-408c-9217-66156ffa79ff",
         "Label": "Sub08_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub08/con_0001.nii",
         "digest": {
@@ -163,7 +163,7 @@
         }
       },
       {
-        "@id": "urn:eb38131d-32b2-4cbf-9b65-bb40b299df05",
+        "@id": "urn:b3ad7f23-b5b1-495b-bd54-c81324facbbf",
         "Label": "Sub09_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub09/con_0001.nii",
         "digest": {
@@ -171,7 +171,7 @@
         }
       },
       {
-        "@id": "urn:842c7ba0-0064-4d8d-8f99-6361ff2599d4",
+        "@id": "urn:a73f4c88-b010-423c-a66f-891d32b30cc8",
         "Label": "Sub10_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub10/con_0001.nii",
         "digest": {
@@ -179,7 +179,7 @@
         }
       },
       {
-        "@id": "urn:52511106-bdb5-436c-8f3f-0c0d2edaa139",
+        "@id": "urn:45ff77e8-eb82-4175-80d0-f95a34bedc2d",
         "Label": "Sub11_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub11/con_0001.nii",
         "digest": {
@@ -187,7 +187,7 @@
         }
       },
       {
-        "@id": "urn:7977ef19-0ce9-4505-9a7b-b235b81e2024",
+        "@id": "urn:fe7823e7-a7a4-4991-8938-14e7d736a233",
         "Label": "Sub12_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub12/con_0001.nii",
         "digest": {
@@ -195,7 +195,7 @@
         }
       },
       {
-        "@id": "urn:930d09a1-32c6-4f83-97de-52e2b4e5dd1e",
+        "@id": "urn:7b8a0aed-a199-45c6-9984-691a3b9342b0",
         "Label": "Sub13_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/Data/ds000052/RESULTS/Sub13/con_0001.nii",
         "digest": {
@@ -203,19 +203,19 @@
         }
       },
       {
-        "@id": "urn:5c7cbc9b-48c8-44b8-8f20-4487d457e76b",
+        "@id": "urn:1b5ca7ef-1b1c-417d-9180-6a48d5f2fcb6",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:6845abf4-4f03-4e1e-9fb4-e47350f39fe1"
+        "GeneratedBy": "urn:7ad4dcb0-cec7-4d82-ab67-1da97d0a6e4e"
       },
       {
-        "@id": "urn:ac43406f-3117-41a6-b7af-c087a2a0ab63",
+        "@id": "urn:e455fbcd-8b0e-476b-964a-230f3fb1f315",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:c2684b63-598f-4f5e-b259-31d0868f9fbd"
+        "GeneratedBy": "urn:6cc92bfd-ba05-4178-9439-f356bb45800e"
       },
       {
-        "@id": "urn:6aaedc63-f21c-4f7b-81ae-55afae124789",
+        "@id": "urn:b591dfe1-e4c6-4e46-9d53-c59c3a00c8bf",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:9c0f5dac-fd86-459b-b326-320b070d354c"
+        "GeneratedBy": "urn:5f912f03-d39f-41da-8581-476057afa5b2"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_default_batch.jsonld b/examples/from_parsers/spm/spm_default_batch.jsonld
index 2ab77de37..9cab68574 100644
--- a/examples/from_parsers/spm/spm_default_batch.jsonld
+++ b/examples/from_parsers/spm/spm_default_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "@id": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:4707fc33-7c41-4f66-9b46-e9362b27f739",
+        "@id": "urn:9a8a0caf-982f-4090-b178-7415ef5842b0",
         "Label": "Move file",
         "Used": [
-          "urn:70a2e9c1-f699-4996-92ea-cc6e5e822379"
+          "urn:b97f8a1e-186a-4b15-bab1-ee845c16352d"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:4ea18168-83ac-411f-90fa-b3fcdee833a6",
+        "@id": "urn:b4d4a49d-8698-4991-92f7-6ded6f8f4ab8",
         "Label": "Move file",
         "Used": [
-          "urn:fa4e18e3-3c2a-48c1-9e6d-9e8c4fea9da6"
+          "urn:150a7ce4-f3d0-43dd-81a6-637409ba5481"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:9455faad-b8cd-462a-a17d-795342424c45",
+        "@id": "urn:5fb06023-e8e1-439e-9746-ceaedfd29f11",
         "Label": "Gunzip",
         "Used": [
-          "urn:e69f21ae-6759-4681-95b6-c8ad39e7de22"
+          "urn:0b8198b6-4d60-44c0-9caa-24b1b282aced"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:77118d6c-abae-4566-a58f-c5813e9b102c",
+        "@id": "urn:7abc0423-3682-48cf-8806-fee1a3fb186c",
         "Label": "Gunzip",
         "Used": [
-          "urn:935b4ec8-79a3-4e1f-994e-29c2f7242a36"
+          "urn:ceb18837-f089-46e0-8d15-f53ebe8394c7"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:39034638-6c66-4cb9-9372-fde68eb5b1a0",
+        "@id": "urn:22e2af84-1f98-4cf6-b486-bf0a79a98a8b",
         "Label": "Realign",
         "Used": [
-          "urn:86c6e3c7-7ffe-4555-8dc3-3b571ddee012"
+          "urn:01b68f11-7d17-4160-ba1b-f1fbd37d9835"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:c5c4d138-bb2c-48b5-a3c2-79041dd19565",
+        "@id": "urn:41b4dd62-a1d6-471a-9459-b7c3d9e66545",
         "Label": "Coregister",
         "Used": [
-          "urn:9722cc70-09b9-4f29-8d8b-fdbb14cd3513",
-          "urn:fef2a43c-eaae-4ebc-b7ef-589205bef810"
+          "urn:33d1e994-20d3-4a55-b264-9c6eae9e8172",
+          "urn:420cd2a7-49c9-4fcb-a221-45d7da289ec3"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:f4544d21-aeac-43af-8bee-dce242d6ad99",
+        "@id": "urn:6db2c440-a1c5-4be4-be37-c75b9faba368",
         "Label": "Segment",
         "Used": [
-          "urn:fef2a43c-eaae-4ebc-b7ef-589205bef810"
+          "urn:420cd2a7-49c9-4fcb-a221-45d7da289ec3"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:dfcbdf85-06e9-4175-ad85-a65841a04ff1",
+        "@id": "urn:8dc86011-0121-48e3-945d-edfafd138b17",
         "Label": "Normalize",
         "Used": [
-          "urn:e0e86ef2-0070-4e6a-a7ef-2048348dca4a",
-          "urn:9722cc70-09b9-4f29-8d8b-fdbb14cd3513"
+          "urn:33d1e994-20d3-4a55-b264-9c6eae9e8172",
+          "urn:d9236ad7-4bbc-4dad-ad64-95059a111499"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:fdf9bf5c-f5b2-418f-809d-c9ae3fb7c49a",
+        "@id": "urn:cb8bda64-2c63-42e4-8f16-df3a7449ba41",
         "Label": "Normalize",
         "Used": [
-          "urn:e0e86ef2-0070-4e6a-a7ef-2048348dca4a",
-          "urn:e0e86ef2-0070-4e6a-a7ef-2048348dca4a"
+          "urn:d9236ad7-4bbc-4dad-ad64-95059a111499"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:243917d6-f1de-4d9b-9a28-5b18b08c2b7d",
+        "@id": "urn:b01d3376-c72d-48d5-8d9b-624e86c64704",
         "Label": "Smooth",
         "Used": [
-          "urn:06dd1a96-a05a-4144-b35a-53463465f137"
+          "urn:58675ac0-241a-40e0-8600-1775c2221c7b"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:d9d80477-49d0-45ec-9721-6439160eab83",
+        "@id": "urn:05033224-1bed-4f2e-904f-113e6309a493",
         "Label": "Stat Design",
         "Used": [
-          "urn:a8a46b77-99a6-42bf-837a-9a8c1c51f833",
-          "urn:5dd29509-b5b3-44e5-a292-7d62809c22b2"
+          "urn:9279f452-aed7-4fdd-b6c0-56f597dd3384",
+          "urn:ac224873-aa4f-43e1-bce8-57961761c3b5"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_voxelwise_p0001'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_voxelwise_p0001'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:30436b61-6099-453e-a5a4-2cabd5f7c9af",
+        "@id": "urn:cc9700cd-65ba-4289-bd45-05989e9f1060",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:dc20e262-17a0-4086-a588-6fd64f621ed6"
+          "urn:e3fada0d-7fcf-4eb8-9901-c8a9e6d0cb11"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:d6457024-b31d-4316-a44c-204f5f2b561b",
+        "@id": "urn:71389023-8336-415b-898f-3cea608e577f",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:cf1b1419-bbf9-4471-9c0b-f39e9d282890"
+          "urn:610c8f66-d08d-4279-8b6a-ea432da642c9"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:93f66e36-dea1-4356-88fe-da648830d7e3",
+        "@id": "urn:4ba80317-1444-4c5a-a247-982471301cb6",
         "Label": "Threshold",
         "Used": [
-          "urn:e0e55412-d874-484b-9271-f297fc987ca8"
+          "urn:15a73dc4-e916-465e-a7f7-1cdfe5c68626"
         ],
-        "AssociatedWith": "urn:08d30750-daec-4180-9660-fdee0b204930",
+        "AssociatedWith": "urn:c9b78aca-d364-47a2-b0a0-a38de2ecc994",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:70a2e9c1-f699-4996-92ea-cc6e5e822379",
+        "@id": "urn:b97f8a1e-186a-4b15-bab1-ee845c16352d",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:fa4e18e3-3c2a-48c1-9e6d-9e8c4fea9da6",
+        "@id": "urn:150a7ce4-f3d0-43dd-81a6-637409ba5481",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:e69f21ae-6759-4681-95b6-c8ad39e7de22",
+        "@id": "urn:0b8198b6-4d60-44c0-9caa-24b1b282aced",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:4707fc33-7c41-4f66-9b46-e9362b27f739"
+        "GeneratedBy": "urn:9a8a0caf-982f-4090-b178-7415ef5842b0"
       },
       {
-        "@id": "urn:935b4ec8-79a3-4e1f-994e-29c2f7242a36",
+        "@id": "urn:ceb18837-f089-46e0-8d15-f53ebe8394c7",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:4ea18168-83ac-411f-90fa-b3fcdee833a6"
+        "GeneratedBy": "urn:b4d4a49d-8698-4991-92f7-6ded6f8f4ab8"
       },
       {
-        "@id": "urn:86c6e3c7-7ffe-4555-8dc3-3b571ddee012",
+        "@id": "urn:01b68f11-7d17-4160-ba1b-f1fbd37d9835",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:9455faad-b8cd-462a-a17d-795342424c45"
+        "GeneratedBy": "urn:5fb06023-e8e1-439e-9746-ceaedfd29f11"
       },
       {
-        "@id": "urn:9722cc70-09b9-4f29-8d8b-fdbb14cd3513",
+        "@id": "urn:33d1e994-20d3-4a55-b264-9c6eae9e8172",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:39034638-6c66-4cb9-9372-fde68eb5b1a0"
+        "GeneratedBy": "urn:22e2af84-1f98-4cf6-b486-bf0a79a98a8b"
       },
       {
-        "@id": "urn:fef2a43c-eaae-4ebc-b7ef-589205bef810",
+        "@id": "urn:420cd2a7-49c9-4fcb-a221-45d7da289ec3",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:77118d6c-abae-4566-a58f-c5813e9b102c"
+        "GeneratedBy": "urn:7abc0423-3682-48cf-8806-fee1a3fb186c"
       },
       {
-        "@id": "urn:e0e86ef2-0070-4e6a-a7ef-2048348dca4a",
+        "@id": "urn:d9236ad7-4bbc-4dad-ad64-95059a111499",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:f4544d21-aeac-43af-8bee-dce242d6ad99",
+        "GeneratedBy": "urn:6db2c440-a1c5-4be4-be37-c75b9faba368",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:2511e06b-b1e2-40db-8fb8-b4b80d6be4f9",
+        "@id": "urn:ff48f871-b123-4c72-b715-2253a677865a",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:f4544d21-aeac-43af-8bee-dce242d6ad99",
+        "GeneratedBy": "urn:6db2c440-a1c5-4be4-be37-c75b9faba368",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:06dd1a96-a05a-4144-b35a-53463465f137",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:dfcbdf85-06e9-4175-ad85-a65841a04ff1"
+        "@id": "urn:58675ac0-241a-40e0-8600-1775c2221c7b",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:8dc86011-0121-48e3-945d-edfafd138b17"
       },
       {
-        "@id": "urn:5dd29509-b5b3-44e5-a292-7d62809c22b2",
+        "@id": "urn:ac224873-aa4f-43e1-bce8-57961761c3b5",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:a8a46b77-99a6-42bf-837a-9a8c1c51f833",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:243917d6-f1de-4d9b-9a28-5b18b08c2b7d"
+        "@id": "urn:9279f452-aed7-4fdd-b6c0-56f597dd3384",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:b01d3376-c72d-48d5-8d9b-624e86c64704"
       },
       {
-        "@id": "urn:dc20e262-17a0-4086-a588-6fd64f621ed6",
+        "@id": "urn:e3fada0d-7fcf-4eb8-9901-c8a9e6d0cb11",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:d9d80477-49d0-45ec-9721-6439160eab83"
+        "GeneratedBy": "urn:05033224-1bed-4f2e-904f-113e6309a493"
       },
       {
-        "@id": "urn:cf1b1419-bbf9-4471-9c0b-f39e9d282890",
+        "@id": "urn:610c8f66-d08d-4279-8b6a-ea432da642c9",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:30436b61-6099-453e-a5a4-2cabd5f7c9af"
+        "GeneratedBy": "urn:cc9700cd-65ba-4289-bd45-05989e9f1060"
       },
       {
-        "@id": "urn:e0e55412-d874-484b-9271-f297fc987ca8",
+        "@id": "urn:15a73dc4-e916-465e-a7f7-1cdfe5c68626",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:d6457024-b31d-4316-a44c-204f5f2b561b"
+        "GeneratedBy": "urn:71389023-8336-415b-898f-3cea608e577f"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_explicit_mask_batch.jsonld b/examples/from_parsers/spm/spm_explicit_mask_batch.jsonld
index 96de49d12..244d49f82 100644
--- a/examples/from_parsers/spm/spm_explicit_mask_batch.jsonld
+++ b/examples/from_parsers/spm/spm_explicit_mask_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "@id": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:293853a7-2b50-43fc-9520-a57ca37b2b75",
+        "@id": "urn:6ec6582b-5a64-41b9-b74a-d118936b0284",
         "Label": "Move file",
         "Used": [
-          "urn:39706bf2-a3f7-4bcf-9890-783eb61fe18e"
+          "urn:514fce8a-8ed3-4f25-8595-068414f01b0c"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:6c362f45-df32-43c4-8c57-d8456a54f0be",
+        "@id": "urn:cd3e9e9a-6f09-400c-9eef-126515d808a8",
         "Label": "Move file",
         "Used": [
-          "urn:7e735ee0-84b9-4620-8066-77f43296af08"
+          "urn:876c515d-0b2c-4896-a395-f5208dbee953"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:001bda1e-4507-43fa-a69e-407a63862dba",
+        "@id": "urn:ad185281-72cb-4c30-9556-4af3978bbe83",
         "Label": "Gunzip",
         "Used": [
-          "urn:784958c7-9655-4c6a-b6fe-1e9b2b5aa90c"
+          "urn:4ea6317a-4ae1-4f30-b5a2-4e01539d929e"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:ed01e6fd-a6a0-4ff2-a6c0-ef61f178913f",
+        "@id": "urn:287cbf00-f101-4375-ad78-e61d0f8c648f",
         "Label": "Gunzip",
         "Used": [
-          "urn:518b7ecc-efe2-4b58-aeae-27600c5f27d3"
+          "urn:c4a84cc8-b43e-4379-8adc-83c8d4b5727e"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:fd5cfc88-112e-46d7-881f-f322692999a8",
+        "@id": "urn:5a20644f-8235-42e5-b56f-e86bb7753ecd",
         "Label": "Realign",
         "Used": [
-          "urn:ad73a849-252a-4eab-a0ed-4e6f135564da"
+          "urn:77b26c36-1727-41bd-92d1-903d0fd511c9"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:5366da80-9f44-43af-b7f8-c144029f1703",
+        "@id": "urn:37121a7c-b567-4f85-a500-bb3562563a9d",
         "Label": "Coregister",
         "Used": [
-          "urn:64f2b964-b55e-418f-acbf-fb9e9e0e8437",
-          "urn:c4839939-2e5f-41a7-acd2-fab9794c49cc"
+          "urn:5b603fd4-6998-4e64-b80b-e8c5d0c4544a",
+          "urn:863f1088-36af-4ae7-8a09-4c5ee8c5559f"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:3121c9fd-6157-4d30-bafc-ac592f83fa2c",
+        "@id": "urn:580b968d-c1ef-4ea6-a72c-b4a7646d5ee4",
         "Label": "Segment",
         "Used": [
-          "urn:c4839939-2e5f-41a7-acd2-fab9794c49cc"
+          "urn:863f1088-36af-4ae7-8a09-4c5ee8c5559f"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:d1335ad7-52c8-4e1f-b59e-17bd7ba6b484",
+        "@id": "urn:d604d4b1-3ba4-4569-a3e2-e89c6cb6b835",
         "Label": "Normalize",
         "Used": [
-          "urn:a9b6c421-df6f-4d8f-8949-e84066a596fc",
-          "urn:64f2b964-b55e-418f-acbf-fb9e9e0e8437"
+          "urn:281f3d24-626f-4c05-b06f-01ed8c009bdc",
+          "urn:5b603fd4-6998-4e64-b80b-e8c5d0c4544a"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:9d08e256-18dc-49a0-aaf2-712b1d2f9058",
+        "@id": "urn:25126a8b-b6aa-45e0-b05b-aaddcb7793c8",
         "Label": "Normalize",
         "Used": [
-          "urn:a9b6c421-df6f-4d8f-8949-e84066a596fc",
-          "urn:a9b6c421-df6f-4d8f-8949-e84066a596fc"
+          "urn:281f3d24-626f-4c05-b06f-01ed8c009bdc"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:df92cbe6-0bd4-4c06-8a1f-c506d04e61aa",
+        "@id": "urn:f429e94a-e5cc-4796-835d-4fc7ba1917d1",
         "Label": "Smooth",
         "Used": [
-          "urn:7cbb0614-9599-46c3-a88b-12051f4807c6"
+          "urn:d15366f1-fcfc-4689-94f3-936e235b3bdd"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,14 +186,14 @@
         }
       },
       {
-        "@id": "urn:caa8a218-5221-431d-844c-4b289f771d4c",
+        "@id": "urn:8d91aa22-22f8-4ea2-9ca5-42d0f4643f4f",
         "Label": "Stat Design",
         "Used": [
-          "urn:cd0208c7-17e5-427d-a397-16b38eb8273e",
-          "urn:c9073dc8-0f92-4a58-87c6-462a9196c888",
-          "urn:d4278130-8cdf-448b-ab29-18f934b19c89"
+          "urn:52c07d8f-2a53-4bf0-bf9e-c5a1656c9deb",
+          "urn:8a207674-153d-4980-85d2-dbcc92f688d2",
+          "urn:affc4ea6-1cd3-4deb-bf21-c01b7d788de1"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_explicit_mask'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_contrast_mask/mask.nii,1'};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_explicit_mask'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:223b5f50-2b03-45d3-b424-40d1fa650516",
+        "@id": "urn:9e439a85-3103-4992-96af-be574019827e",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:678905c1-d3f9-4079-8e8a-ebeff7b289ba"
+          "urn:947fc159-4080-408c-90d8-9c082ab4f5db"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:c9d42685-079c-4445-b83e-ce7178ddd0fa",
+        "@id": "urn:16e3f814-261e-426c-ac40-a4112a65d10d",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:efc86a01-5f01-4b48-9380-fdb30ecd01b2"
+          "urn:5ca8b30b-941d-4623-abe9-cd9d43ac941c"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:fef3aff5-1de5-4c25-8ff1-4d95a6ef5a30",
+        "@id": "urn:170a2642-1f39-449a-b52c-43a3f96332f4",
         "Label": "Threshold",
         "Used": [
-          "urn:c7ebc85c-e88c-400a-8e89-237b22c196fe"
+          "urn:8d4a17dd-0272-4c84-abd0-49fe8c41c0ee"
         ],
-        "AssociatedWith": "urn:a305c30b-a37a-44ea-8c35-13978fc055af",
+        "AssociatedWith": "urn:e64b9468-e646-4716-a449-e734edd20283",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:39706bf2-a3f7-4bcf-9890-783eb61fe18e",
+        "@id": "urn:514fce8a-8ed3-4f25-8595-068414f01b0c",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:7e735ee0-84b9-4620-8066-77f43296af08",
+        "@id": "urn:876c515d-0b2c-4896-a395-f5208dbee953",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:784958c7-9655-4c6a-b6fe-1e9b2b5aa90c",
+        "@id": "urn:4ea6317a-4ae1-4f30-b5a2-4e01539d929e",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:293853a7-2b50-43fc-9520-a57ca37b2b75"
+        "GeneratedBy": "urn:6ec6582b-5a64-41b9-b74a-d118936b0284"
       },
       {
-        "@id": "urn:518b7ecc-efe2-4b58-aeae-27600c5f27d3",
+        "@id": "urn:c4a84cc8-b43e-4379-8adc-83c8d4b5727e",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:6c362f45-df32-43c4-8c57-d8456a54f0be"
+        "GeneratedBy": "urn:cd3e9e9a-6f09-400c-9eef-126515d808a8"
       },
       {
-        "@id": "urn:ad73a849-252a-4eab-a0ed-4e6f135564da",
+        "@id": "urn:77b26c36-1727-41bd-92d1-903d0fd511c9",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:001bda1e-4507-43fa-a69e-407a63862dba"
+        "GeneratedBy": "urn:ad185281-72cb-4c30-9556-4af3978bbe83"
       },
       {
-        "@id": "urn:64f2b964-b55e-418f-acbf-fb9e9e0e8437",
+        "@id": "urn:5b603fd4-6998-4e64-b80b-e8c5d0c4544a",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:fd5cfc88-112e-46d7-881f-f322692999a8"
+        "GeneratedBy": "urn:5a20644f-8235-42e5-b56f-e86bb7753ecd"
       },
       {
-        "@id": "urn:c4839939-2e5f-41a7-acd2-fab9794c49cc",
+        "@id": "urn:863f1088-36af-4ae7-8a09-4c5ee8c5559f",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:ed01e6fd-a6a0-4ff2-a6c0-ef61f178913f"
+        "GeneratedBy": "urn:287cbf00-f101-4375-ad78-e61d0f8c648f"
       },
       {
-        "@id": "urn:a9b6c421-df6f-4d8f-8949-e84066a596fc",
+        "@id": "urn:281f3d24-626f-4c05-b06f-01ed8c009bdc",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:3121c9fd-6157-4d30-bafc-ac592f83fa2c",
+        "GeneratedBy": "urn:580b968d-c1ef-4ea6-a72c-b4a7646d5ee4",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:afe43f5a-5a5d-451b-a766-8dcbdb7ff23f",
+        "@id": "urn:70348754-5a48-4403-b347-fc5192079828",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:3121c9fd-6157-4d30-bafc-ac592f83fa2c",
+        "GeneratedBy": "urn:580b968d-c1ef-4ea6-a72c-b4a7646d5ee4",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:7cbb0614-9599-46c3-a88b-12051f4807c6",
+        "@id": "urn:d15366f1-fcfc-4689-94f3-936e235b3bdd",
         "Label": "wsegment1",
-        "GeneratedBy": "urn:d1335ad7-52c8-4e1f-b59e-17bd7ba6b484"
+        "GeneratedBy": "urn:d604d4b1-3ba4-4569-a3e2-e89c6cb6b835"
       },
       {
-        "@id": "urn:c9073dc8-0f92-4a58-87c6-462a9196c888",
+        "@id": "urn:8a207674-153d-4980-85d2-dbcc92f688d2",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,7 +339,7 @@
         }
       },
       {
-        "@id": "urn:d4278130-8cdf-448b-ab29-18f934b19c89",
+        "@id": "urn:affc4ea6-1cd3-4deb-bf21-c01b7d788de1",
         "Label": "spm_contrast_mask_mask.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_contrast_mask/mask.nii",
         "digest": {
@@ -348,24 +347,24 @@
         }
       },
       {
-        "@id": "urn:cd0208c7-17e5-427d-a397-16b38eb8273e",
+        "@id": "urn:52c07d8f-2a53-4bf0-bf9e-c5a1656c9deb",
         "Label": "swsegment1",
-        "GeneratedBy": "urn:df92cbe6-0bd4-4c06-8a1f-c506d04e61aa"
+        "GeneratedBy": "urn:f429e94a-e5cc-4796-835d-4fc7ba1917d1"
       },
       {
-        "@id": "urn:678905c1-d3f9-4079-8e8a-ebeff7b289ba",
+        "@id": "urn:947fc159-4080-408c-90d8-9c082ab4f5db",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:caa8a218-5221-431d-844c-4b289f771d4c"
+        "GeneratedBy": "urn:8d91aa22-22f8-4ea2-9ca5-42d0f4643f4f"
       },
       {
-        "@id": "urn:efc86a01-5f01-4b48-9380-fdb30ecd01b2",
+        "@id": "urn:5ca8b30b-941d-4623-abe9-cd9d43ac941c",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:223b5f50-2b03-45d3-b424-40d1fa650516"
+        "GeneratedBy": "urn:9e439a85-3103-4992-96af-be574019827e"
       },
       {
-        "@id": "urn:c7ebc85c-e88c-400a-8e89-237b22c196fe",
+        "@id": "urn:8d4a17dd-0272-4c84-abd0-49fe8c41c0ee",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:c9d42685-079c-4445-b83e-ce7178ddd0fa"
+        "GeneratedBy": "urn:16e3f814-261e-426c-ac40-a4112a65d10d"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_group_ols_batch.jsonld b/examples/from_parsers/spm/spm_group_ols_batch.jsonld
index e620bd712..5745ee46b 100644
--- a/examples/from_parsers/spm/spm_group_ols_batch.jsonld
+++ b/examples/from_parsers/spm/spm_group_ols_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:9e154a04-adf5-4892-9856-fd8ce771786a",
+        "@id": "urn:325a2bfd-6837-4b92-822d-3b697d0883a6",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,25 +13,25 @@
     ],
     "Activities": [
       {
-        "@id": "urn:72200829-1d73-419e-aec9-c1447e92e941",
+        "@id": "urn:c4b41eb0-6e4c-466e-907d-9ae326422bdb",
         "Label": "stats.factorial_design",
         "Used": [
-          "urn:be55819c-21bc-4561-934b-edc05d5e660a",
-          "urn:5145d4af-4d72-4daa-9067-cb76d89eed9c",
-          "urn:ad350bf9-e517-49d8-9019-361963775a0f",
-          "urn:78f3984b-919a-4bcb-8f8d-2868961736c1",
-          "urn:f3e2b286-a6e2-427e-b5fe-bc4389dea257",
-          "urn:a6ea5103-3e65-49ed-8c46-e7dd0671cb33",
-          "urn:cf0b023c-b6b6-4cc3-b7eb-3708194092e5",
-          "urn:e7b0996d-40d0-4d73-b587-f8982e0c5c55",
-          "urn:3d1775e1-e6d1-44d4-9cc6-e7b2558fbaec",
-          "urn:9e297dda-2f52-476f-8c2c-5a4b2cf42a1b",
-          "urn:78048600-5a41-4e61-a4cf-16d22e2bc63f",
-          "urn:a6f01e18-f324-4587-938f-b524db505088",
-          "urn:9002f1b5-4239-44e4-8932-7d943f25e6e9",
-          "urn:9d1a2eee-dd33-4671-b14d-2a1872b5480b"
+          "urn:0139ed04-010d-414f-8907-5d6163b567ea",
+          "urn:cd76fc5a-b376-4723-bac8-111eaaa24083",
+          "urn:793001e3-092c-46bb-b006-638851f60f1e",
+          "urn:695fc232-c43b-47af-9cef-3c948b5bfcff",
+          "urn:51085d5c-9272-48b6-8298-868f86ac98e5",
+          "urn:3e6964e1-0ce4-4cae-b165-83f556a2a6e4",
+          "urn:90ae9a95-aa81-4c49-a5ba-b7a37d554b7f",
+          "urn:6310131e-c904-4128-a310-bcd85a930896",
+          "urn:6029fd2b-6341-4c78-9c8f-ed8b23999598",
+          "urn:11447d06-8a2a-4344-baaa-cf78666297e9",
+          "urn:e743a0bb-478d-4238-aedf-b1620721c88b",
+          "urn:322ef859-6275-4576-b46c-c4b1de5333f5",
+          "urn:a65b8d80-0bd7-4490-b8d2-6dbe12682ca9",
+          "urn:6670247b-4942-4a7a-a1fa-31c4d3f24695"
         ],
-        "AssociatedWith": "urn:9e154a04-adf5-4892-9856-fd8ce771786a",
+        "AssociatedWith": "urn:325a2bfd-6837-4b92-822d-3b697d0883a6",
         "Command": "matlabbatch{1}.spm.stats.factorial_design.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_t_test'};\nmatlabbatch{1}.spm.stats.factorial_design.des.t1.scans = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-01/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-02/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-03/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-04/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-05/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-06/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-07/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-08/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-09/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-10/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-11/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-12/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-13/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-14/con_0001.nii,1',};\nmatlabbatch{1}.spm.stats.factorial_design.cov = struct('c', {}, 'cname', {}, 'iCFI', {}, 'iCC', {});\nmatlabbatch{1}.spm.stats.factorial_design.multi_cov = struct('files', {}, 'iCFI', {}, 'iCC', {});\nmatlabbatch{1}.spm.stats.factorial_design.masking.tm.tm_none = 1;\nmatlabbatch{1}.spm.stats.factorial_design.masking.im = 1;\nmatlabbatch{1}.spm.stats.factorial_design.masking.em = {''};\nmatlabbatch{1}.spm.stats.factorial_design.globalc.g_omit = 1;\nmatlabbatch{1}.spm.stats.factorial_design.globalm.gmsca.gmsca_no = 1;\nmatlabbatch{1}.spm.stats.factorial_design.globalm.glonorm = 1;",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_t_test'}",
@@ -46,12 +46,12 @@
         }
       },
       {
-        "@id": "urn:2c0f03e8-19de-4de6-8318-65d031bacb43",
+        "@id": "urn:9ab1f065-b1b1-4d54-a405-59ef938a5da1",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:fb916597-66ca-4bbc-b771-b741c3716c95"
+          "urn:58295d4c-36e1-499e-8a3a-181a424b6142"
         ],
-        "AssociatedWith": "urn:9e154a04-adf5-4892-9856-fd8ce771786a",
+        "AssociatedWith": "urn:325a2bfd-6837-4b92-822d-3b697d0883a6",
         "Command": "matlabbatch{2}.spm.stats.fmri_est.spmmat(1) = cfg_dep('Factorial design specification: SPM.mat File', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{2}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{2}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -59,12 +59,12 @@
         }
       },
       {
-        "@id": "urn:337f5818-a83f-4d3b-ba14-059d35f9920c",
+        "@id": "urn:b1cfd1b0-2ccc-4359-b62c-14e43afb5b18",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:fcee0b5c-13c9-4567-8f44-629ba9e7a513"
+          "urn:3dc068ee-1ef5-4ee5-bb1b-e1c8b3c87c91"
         ],
-        "AssociatedWith": "urn:9e154a04-adf5-4892-9856-fd8ce771786a",
+        "AssociatedWith": "urn:325a2bfd-6837-4b92-822d-3b697d0883a6",
         "Command": "matlabbatch{3}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.name = 'con-01';\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.weights = 1;\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{3}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'con-01'",
@@ -74,12 +74,12 @@
         }
       },
       {
-        "@id": "urn:3844eec4-0749-4130-aed2-99ca8096e764",
+        "@id": "urn:00eac208-4c30-4d3c-9282-5d94b806e027",
         "Label": "Threshold",
         "Used": [
-          "urn:6061039d-c936-4440-aab6-07af6a1345ea"
+          "urn:9d1898a7-03e2-445f-8756-faeb5bec2948"
         ],
-        "AssociatedWith": "urn:9e154a04-adf5-4892-9856-fd8ce771786a",
+        "AssociatedWith": "urn:325a2bfd-6837-4b92-822d-3b697d0883a6",
         "Command": "matlabbatch{4}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{4}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{4}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{4}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{4}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{4}.spm.stats.results.conspec.extent = 120;\nmatlabbatch{4}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{4}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{4}.spm.stats.results.units = 1;\nmatlabbatch{4}.spm.stats.results.print = 'pdf';\nmatlabbatch{4}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -97,7 +97,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:be55819c-21bc-4561-934b-edc05d5e660a",
+        "@id": "urn:0139ed04-010d-414f-8907-5d6163b567ea",
         "Label": "sub-01_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-01/con_0001.nii",
         "digest": {
@@ -105,7 +105,7 @@
         }
       },
       {
-        "@id": "urn:5145d4af-4d72-4daa-9067-cb76d89eed9c",
+        "@id": "urn:cd76fc5a-b376-4723-bac8-111eaaa24083",
         "Label": "sub-02_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-02/con_0001.nii",
         "digest": {
@@ -113,7 +113,7 @@
         }
       },
       {
-        "@id": "urn:ad350bf9-e517-49d8-9019-361963775a0f",
+        "@id": "urn:793001e3-092c-46bb-b006-638851f60f1e",
         "Label": "sub-03_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-03/con_0001.nii",
         "digest": {
@@ -121,7 +121,7 @@
         }
       },
       {
-        "@id": "urn:78f3984b-919a-4bcb-8f8d-2868961736c1",
+        "@id": "urn:695fc232-c43b-47af-9cef-3c948b5bfcff",
         "Label": "sub-04_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-04/con_0001.nii",
         "digest": {
@@ -129,7 +129,7 @@
         }
       },
       {
-        "@id": "urn:f3e2b286-a6e2-427e-b5fe-bc4389dea257",
+        "@id": "urn:51085d5c-9272-48b6-8298-868f86ac98e5",
         "Label": "sub-05_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-05/con_0001.nii",
         "digest": {
@@ -137,7 +137,7 @@
         }
       },
       {
-        "@id": "urn:a6ea5103-3e65-49ed-8c46-e7dd0671cb33",
+        "@id": "urn:3e6964e1-0ce4-4cae-b165-83f556a2a6e4",
         "Label": "sub-06_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-06/con_0001.nii",
         "digest": {
@@ -145,7 +145,7 @@
         }
       },
       {
-        "@id": "urn:cf0b023c-b6b6-4cc3-b7eb-3708194092e5",
+        "@id": "urn:90ae9a95-aa81-4c49-a5ba-b7a37d554b7f",
         "Label": "sub-07_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-07/con_0001.nii",
         "digest": {
@@ -153,7 +153,7 @@
         }
       },
       {
-        "@id": "urn:e7b0996d-40d0-4d73-b587-f8982e0c5c55",
+        "@id": "urn:6310131e-c904-4128-a310-bcd85a930896",
         "Label": "sub-08_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-08/con_0001.nii",
         "digest": {
@@ -161,7 +161,7 @@
         }
       },
       {
-        "@id": "urn:3d1775e1-e6d1-44d4-9cc6-e7b2558fbaec",
+        "@id": "urn:6029fd2b-6341-4c78-9c8f-ed8b23999598",
         "Label": "sub-09_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-09/con_0001.nii",
         "digest": {
@@ -169,7 +169,7 @@
         }
       },
       {
-        "@id": "urn:9e297dda-2f52-476f-8c2c-5a4b2cf42a1b",
+        "@id": "urn:11447d06-8a2a-4344-baaa-cf78666297e9",
         "Label": "sub-10_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-10/con_0001.nii",
         "digest": {
@@ -177,7 +177,7 @@
         }
       },
       {
-        "@id": "urn:78048600-5a41-4e61-a4cf-16d22e2bc63f",
+        "@id": "urn:e743a0bb-478d-4238-aedf-b1620721c88b",
         "Label": "sub-11_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-11/con_0001.nii",
         "digest": {
@@ -185,7 +185,7 @@
         }
       },
       {
-        "@id": "urn:a6f01e18-f324-4587-938f-b524db505088",
+        "@id": "urn:322ef859-6275-4576-b46c-c4b1de5333f5",
         "Label": "sub-12_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-12/con_0001.nii",
         "digest": {
@@ -193,7 +193,7 @@
         }
       },
       {
-        "@id": "urn:9002f1b5-4239-44e4-8932-7d943f25e6e9",
+        "@id": "urn:a65b8d80-0bd7-4490-b8d2-6dbe12682ca9",
         "Label": "sub-13_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-13/con_0001.nii",
         "digest": {
@@ -201,7 +201,7 @@
         }
       },
       {
-        "@id": "urn:9d1a2eee-dd33-4671-b14d-2a1872b5480b",
+        "@id": "urn:6670247b-4942-4a7a-a1fa-31c4d3f24695",
         "Label": "sub-14_con_0001.nii",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-14/con_0001.nii",
         "digest": {
@@ -209,19 +209,19 @@
         }
       },
       {
-        "@id": "urn:fb916597-66ca-4bbc-b771-b741c3716c95",
+        "@id": "urn:58295d4c-36e1-499e-8a3a-181a424b6142",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:72200829-1d73-419e-aec9-c1447e92e941"
+        "GeneratedBy": "urn:c4b41eb0-6e4c-466e-907d-9ae326422bdb"
       },
       {
-        "@id": "urn:fcee0b5c-13c9-4567-8f44-629ba9e7a513",
+        "@id": "urn:3dc068ee-1ef5-4ee5-bb1b-e1c8b3c87c91",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:2c0f03e8-19de-4de6-8318-65d031bacb43"
+        "GeneratedBy": "urn:9ab1f065-b1b1-4d54-a405-59ef938a5da1"
       },
       {
-        "@id": "urn:6061039d-c936-4440-aab6-07af6a1345ea",
+        "@id": "urn:9d1898a7-03e2-445f-8756-faeb5bec2948",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:337f5818-a83f-4d3b-ba14-059d35f9920c"
+        "GeneratedBy": "urn:b1cfd1b0-2ccc-4359-b62c-14e43afb5b18"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_group_wls_batch.jsonld b/examples/from_parsers/spm/spm_group_wls_batch.jsonld
index d9f7072fc..899402ddd 100644
--- a/examples/from_parsers/spm/spm_group_wls_batch.jsonld
+++ b/examples/from_parsers/spm/spm_group_wls_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "@id": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,37 +13,37 @@
     ],
     "Activities": [
       {
-        "@id": "urn:f7b45616-d40f-4f94-9390-20175b6abab7",
+        "@id": "urn:1170e700-aa59-4aa0-997b-b8f4e38a73d6",
         "Label": "stats.mfx.ffx",
         "Used": [
-          "urn:49ddb519-977c-4811-810f-148fd1d470bf",
-          "urn:33aca4fb-d789-4ab3-96b7-d6f51bb3f6c5",
-          "urn:b998fe7f-cac5-417b-a893-9c24f9d9c772",
-          "urn:035743bc-1100-484b-94c6-b43764e0cd18",
-          "urn:7ad4dcb0-cec7-4d82-ab67-1da97d0a6e4e",
-          "urn:fe7f40a7-0fb0-4d06-bbd9-2b2eac246769",
-          "urn:9fe42f85-752e-4fee-8973-6463a374f383",
-          "urn:bb39b855-9542-4c73-800c-28d70f33d72f",
-          "urn:a9e915bc-4251-4ce4-aae6-e019c0098d4a",
-          "urn:a3a0a820-1bda-451a-9a7a-8efcde1f9e21",
-          "urn:e3afcce5-5eab-469d-a72b-caa4bf38c61d",
-          "urn:af3a6a6e-ab3b-495f-9d79-975b4fac173b",
-          "urn:b3b270f2-332e-408c-9217-66156ffa79ff",
-          "urn:b3ad7f23-b5b1-495b-bd54-c81324facbbf"
+          "urn:de7874b0-8d41-4d13-9f8a-d25dd58b7343",
+          "urn:80c4a099-d6e8-436f-95e3-7200b12e2428",
+          "urn:12c1865a-4e4e-43c6-9f86-75748ccc4b69",
+          "urn:283f6a2c-60bd-4445-8863-64da92b4e7ec",
+          "urn:2fc87508-3c73-46fa-8b6d-1ee5c8e516e5",
+          "urn:fe07b655-f61a-42ab-997a-c3213afad432",
+          "urn:cb76aa60-f974-4049-9756-cd45aff5f484",
+          "urn:4f3e80fa-50c7-4f8b-8415-92b4b77b380e",
+          "urn:d3f5c0f9-c276-4ecf-b5e5-7842e1866af6",
+          "urn:a73c178f-c270-4508-803e-75b75a75d3d5",
+          "urn:20676c33-d8a3-4691-977a-ea452c18f373",
+          "urn:aa96021b-cc85-47e0-afd1-a427861606f0",
+          "urn:50667222-e5a1-489b-b422-5627eca72bc6",
+          "urn:5149ab44-6c94-47ec-9d96-f8a8558e930b"
         ],
-        "AssociatedWith": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "AssociatedWith": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "Command": "matlabbatch{1}.spm.stats.mfx.ffx.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_WLS_t_test'};\nmatlabbatch{1}.spm.stats.mfx.ffx.spmmat = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-01/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-02/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-03/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-04/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-06/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-07/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-08/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-09/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-10/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-11/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-12/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-13/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-14/SPM.mat','/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-05/SPM.mat',};",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_WLS_t_test'}"
         }
       },
       {
-        "@id": "urn:a73f4c88-b010-423c-a66f-891d32b30cc8",
+        "@id": "urn:fc2beb3a-0ddd-4657-a687-4409efff62b4",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:45ff77e8-eb82-4175-80d0-f95a34bedc2d"
+          "urn:d191a56c-9c39-409d-a7f3-89bf42f57cc6"
         ],
-        "AssociatedWith": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "AssociatedWith": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "Command": "matlabbatch{2}.spm.stats.fmri_est.spmmat(1) = cfg_dep('FFX Specification: SPM.mat File', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{2}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{2}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -51,24 +51,24 @@
         }
       },
       {
-        "@id": "urn:fe7823e7-a7a4-4991-8938-14e7d736a233",
+        "@id": "urn:072360e9-f1eb-43eb-9fa1-b58a93ba009d",
         "Label": "stats.mfx.spec",
         "Used": [
-          "urn:7b8a0aed-a199-45c6-9984-691a3b9342b0"
+          "urn:1dcfc72d-5ed6-4ff7-a613-c69991b5c517"
         ],
-        "AssociatedWith": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "AssociatedWith": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "Command": "matlabbatch{3}.spm.stats.mfx.spec.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{3}.spm.stats.mfx.spec.contrast = [];",
         "Parameters": {
           "contrast": "[]"
         }
       },
       {
-        "@id": "urn:6cc92bfd-ba05-4178-9439-f356bb45800e",
+        "@id": "urn:162eba86-ca6b-40ce-90b8-82fc8a8aee10",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:1b5ca7ef-1b1c-417d-9180-6a48d5f2fcb6"
+          "urn:d6cbc859-2b90-4245-a5fa-a7da66481e8f"
         ],
-        "AssociatedWith": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "AssociatedWith": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "Command": "matlabbatch{4}.spm.stats.fmri_est.spmmat(1) = cfg_dep('MFX Specification: SPM.mat File', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{4}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{4}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -76,12 +76,12 @@
         }
       },
       {
-        "@id": "urn:5f912f03-d39f-41da-8581-476057afa5b2",
+        "@id": "urn:b50c1808-e500-4550-966a-e626b6b521f9",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:e455fbcd-8b0e-476b-964a-230f3fb1f315"
+          "urn:0f978606-b24a-49bb-bc30-6419c648087e"
         ],
-        "AssociatedWith": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "AssociatedWith": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "Command": "matlabbatch{5}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{5}.spm.stats.con.consess{1}.tcon.name = 'con-01: Tone Counting vs Baseline';\nmatlabbatch{5}.spm.stats.con.consess{1}.tcon.weights = 1;\nmatlabbatch{5}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{5}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'con-01: Tone Counting vs Baseline'",
@@ -91,12 +91,12 @@
         }
       },
       {
-        "@id": "urn:1e091424-d3b1-4596-b5e1-2b5167927fa1",
+        "@id": "urn:be39d02a-940a-4437-9d22-c7f954010a48",
         "Label": "Threshold",
         "Used": [
-          "urn:b591dfe1-e4c6-4e46-9d53-c59c3a00c8bf"
+          "urn:b75e6167-a56b-47f0-b2b3-f704b2e3f1d1"
         ],
-        "AssociatedWith": "urn:c769e5d3-d624-487f-8403-8a811b38236f",
+        "AssociatedWith": "urn:cad734fe-8e50-4457-92ae-2951b1114e43",
         "Command": "matlabbatch{6}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{6}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{6}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{6}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{6}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{6}.spm.stats.results.conspec.extent = 2;\nmatlabbatch{6}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{6}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{6}.spm.stats.results.units = 1;\nmatlabbatch{6}.spm.stats.results.print = 'pdf';\nmatlabbatch{6}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -114,7 +114,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:49ddb519-977c-4811-810f-148fd1d470bf",
+        "@id": "urn:de7874b0-8d41-4d13-9f8a-d25dd58b7343",
         "Label": "sub-01_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-01/SPM.mat",
         "digest": {
@@ -122,7 +122,7 @@
         }
       },
       {
-        "@id": "urn:33aca4fb-d789-4ab3-96b7-d6f51bb3f6c5",
+        "@id": "urn:80c4a099-d6e8-436f-95e3-7200b12e2428",
         "Label": "sub-02_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-02/SPM.mat",
         "digest": {
@@ -130,7 +130,7 @@
         }
       },
       {
-        "@id": "urn:b998fe7f-cac5-417b-a893-9c24f9d9c772",
+        "@id": "urn:12c1865a-4e4e-43c6-9f86-75748ccc4b69",
         "Label": "sub-03_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-03/SPM.mat",
         "digest": {
@@ -138,7 +138,7 @@
         }
       },
       {
-        "@id": "urn:035743bc-1100-484b-94c6-b43764e0cd18",
+        "@id": "urn:283f6a2c-60bd-4445-8863-64da92b4e7ec",
         "Label": "sub-04_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-04/SPM.mat",
         "digest": {
@@ -146,7 +146,7 @@
         }
       },
       {
-        "@id": "urn:7ad4dcb0-cec7-4d82-ab67-1da97d0a6e4e",
+        "@id": "urn:2fc87508-3c73-46fa-8b6d-1ee5c8e516e5",
         "Label": "sub-06_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-06/SPM.mat",
         "digest": {
@@ -154,7 +154,7 @@
         }
       },
       {
-        "@id": "urn:fe7f40a7-0fb0-4d06-bbd9-2b2eac246769",
+        "@id": "urn:fe07b655-f61a-42ab-997a-c3213afad432",
         "Label": "sub-07_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-07/SPM.mat",
         "digest": {
@@ -162,7 +162,7 @@
         }
       },
       {
-        "@id": "urn:9fe42f85-752e-4fee-8973-6463a374f383",
+        "@id": "urn:cb76aa60-f974-4049-9756-cd45aff5f484",
         "Label": "sub-08_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-08/SPM.mat",
         "digest": {
@@ -170,7 +170,7 @@
         }
       },
       {
-        "@id": "urn:bb39b855-9542-4c73-800c-28d70f33d72f",
+        "@id": "urn:4f3e80fa-50c7-4f8b-8415-92b4b77b380e",
         "Label": "sub-09_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-09/SPM.mat",
         "digest": {
@@ -178,7 +178,7 @@
         }
       },
       {
-        "@id": "urn:a9e915bc-4251-4ce4-aae6-e019c0098d4a",
+        "@id": "urn:d3f5c0f9-c276-4ecf-b5e5-7842e1866af6",
         "Label": "sub-10_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-10/SPM.mat",
         "digest": {
@@ -186,7 +186,7 @@
         }
       },
       {
-        "@id": "urn:a3a0a820-1bda-451a-9a7a-8efcde1f9e21",
+        "@id": "urn:a73c178f-c270-4508-803e-75b75a75d3d5",
         "Label": "sub-11_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-11/SPM.mat",
         "digest": {
@@ -194,7 +194,7 @@
         }
       },
       {
-        "@id": "urn:e3afcce5-5eab-469d-a72b-caa4bf38c61d",
+        "@id": "urn:20676c33-d8a3-4691-977a-ea452c18f373",
         "Label": "sub-12_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-12/SPM.mat",
         "digest": {
@@ -202,7 +202,7 @@
         }
       },
       {
-        "@id": "urn:af3a6a6e-ab3b-495f-9d79-975b4fac173b",
+        "@id": "urn:aa96021b-cc85-47e0-afd1-a427861606f0",
         "Label": "sub-13_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-13/SPM.mat",
         "digest": {
@@ -210,7 +210,7 @@
         }
       },
       {
-        "@id": "urn:b3b270f2-332e-408c-9217-66156ffa79ff",
+        "@id": "urn:50667222-e5a1-489b-b422-5627eca72bc6",
         "Label": "sub-14_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-14/SPM.mat",
         "digest": {
@@ -218,7 +218,7 @@
         }
       },
       {
-        "@id": "urn:b3ad7f23-b5b1-495b-bd54-c81324facbbf",
+        "@id": "urn:5149ab44-6c94-47ec-9d96-f8a8558e930b",
         "Label": "sub-05_SPM.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/LEVEL1/sub-05/SPM.mat",
         "digest": {
@@ -226,29 +226,29 @@
         }
       },
       {
-        "@id": "urn:45ff77e8-eb82-4175-80d0-f95a34bedc2d",
+        "@id": "urn:d191a56c-9c39-409d-a7f3-89bf42f57cc6",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:f7b45616-d40f-4f94-9390-20175b6abab7"
+        "GeneratedBy": "urn:1170e700-aa59-4aa0-997b-b8f4e38a73d6"
       },
       {
-        "@id": "urn:7b8a0aed-a199-45c6-9984-691a3b9342b0",
+        "@id": "urn:1dcfc72d-5ed6-4ff7-a613-c69991b5c517",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:a73f4c88-b010-423c-a66f-891d32b30cc8"
+        "GeneratedBy": "urn:fc2beb3a-0ddd-4657-a687-4409efff62b4"
       },
       {
-        "@id": "urn:1b5ca7ef-1b1c-417d-9180-6a48d5f2fcb6",
+        "@id": "urn:d6cbc859-2b90-4245-a5fa-a7da66481e8f",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:fe7823e7-a7a4-4991-8938-14e7d736a233"
+        "GeneratedBy": "urn:072360e9-f1eb-43eb-9fa1-b58a93ba009d"
       },
       {
-        "@id": "urn:e455fbcd-8b0e-476b-964a-230f3fb1f315",
+        "@id": "urn:0f978606-b24a-49bb-bc30-6419c648087e",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:6cc92bfd-ba05-4178-9439-f356bb45800e"
+        "GeneratedBy": "urn:162eba86-ca6b-40ce-90b8-82fc8a8aee10"
       },
       {
-        "@id": "urn:b591dfe1-e4c6-4e46-9d53-c59c3a00c8bf",
+        "@id": "urn:b75e6167-a56b-47f0-b2b3-f704b2e3f1d1",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:5f912f03-d39f-41da-8581-476057afa5b2"
+        "GeneratedBy": "urn:b50c1808-e500-4550-966a-e626b6b521f9"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_hrf_fir_batch.jsonld b/examples/from_parsers/spm/spm_hrf_fir_batch.jsonld
index b6229d09b..93c8b2380 100644
--- a/examples/from_parsers/spm/spm_hrf_fir_batch.jsonld
+++ b/examples/from_parsers/spm/spm_hrf_fir_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "@id": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:7c54373f-c93e-4f5c-b2d9-d3a7b7ea47aa",
+        "@id": "urn:083e7a48-1f1e-4a25-8049-d4b80641baae",
         "Label": "Move file",
         "Used": [
-          "urn:3f5fcc63-c232-47b9-9bfe-231b359c95b9"
+          "urn:105801bb-7b35-42d6-9ff2-4966a82149c5"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:3a84825d-17a3-4434-a37e-373c79ae4e45",
+        "@id": "urn:dc28ed67-83ae-483a-9eeb-de245979553a",
         "Label": "Move file",
         "Used": [
-          "urn:e648c12f-577e-426e-b264-ef77b5359fad"
+          "urn:1ae8f36b-01cf-4052-ac85-d10dc0aa6524"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:949d043a-545a-4b78-b266-8885d981bf99",
+        "@id": "urn:45579f06-fc67-4a72-a435-4a2bde6046c2",
         "Label": "Gunzip",
         "Used": [
-          "urn:6ed8d342-b419-4019-bef6-278dea44193e"
+          "urn:d6be4df1-d211-401a-8876-ee0cf6e05ac3"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:ff7ca2bc-829f-4438-bdcf-a712c5c42578",
+        "@id": "urn:bf51fb88-d326-4f30-be43-ab454615eef4",
         "Label": "Gunzip",
         "Used": [
-          "urn:6c68e7db-4b96-4b16-b064-fbf79cad5a41"
+          "urn:d1e447a7-bec3-421c-b7c3-9138d92c7206"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:a044d7d6-c80d-4b3f-873d-e0fae65af109",
+        "@id": "urn:b740cb2c-c571-42cb-92e6-030da5016c8f",
         "Label": "Realign",
         "Used": [
-          "urn:aae4ed70-8823-4964-83b4-5d2f17e7fcc3"
+          "urn:b6722269-67c1-45e2-a55d-94e6e075c7f4"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:1e5abde0-a6bf-4444-81f8-23433fbd770a",
+        "@id": "urn:33f25266-483a-4f84-b431-94d1e059dbfa",
         "Label": "Coregister",
         "Used": [
-          "urn:394e603e-0619-459e-a1c1-6dffeac3be20",
-          "urn:703d1215-6aca-48fc-b9b0-5ae629fcaade"
+          "urn:ae25f772-385e-4722-90fd-3d6bca543569",
+          "urn:d188f22b-b723-47f5-b94e-a0060df4a500"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:2a83909e-befd-42a8-bfd8-2c3310b0f853",
+        "@id": "urn:1f888d36-8dc1-4dd9-aed3-6307c376c266",
         "Label": "Segment",
         "Used": [
-          "urn:703d1215-6aca-48fc-b9b0-5ae629fcaade"
+          "urn:d188f22b-b723-47f5-b94e-a0060df4a500"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:2eabf927-c80e-4338-b26a-0d07283fc38a",
+        "@id": "urn:a46ad4e6-5621-4686-b06f-2f4c85f6fded",
         "Label": "Normalize",
         "Used": [
-          "urn:a99a3cf5-8910-4304-91cd-19b94fd29c69",
-          "urn:394e603e-0619-459e-a1c1-6dffeac3be20"
+          "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
+          "urn:ae25f772-385e-4722-90fd-3d6bca543569"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:1c4d8379-a962-4530-b203-961ea5164edd",
+        "@id": "urn:afb009d3-f148-4a9d-b917-855c4c049aab",
         "Label": "Normalize",
         "Used": [
-          "urn:a99a3cf5-8910-4304-91cd-19b94fd29c69",
-          "urn:a99a3cf5-8910-4304-91cd-19b94fd29c69"
+          "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:055e6616-8da2-44c5-aeb2-418931734dc0",
+        "@id": "urn:e4838222-2b8c-4e52-9bcb-14121cde4681",
         "Label": "Smooth",
         "Used": [
-          "urn:6595ac2d-bf43-4a54-8cd9-f27e08178d8b"
+          "urn:beff7ab6-7cd1-4cc4-a241-5a6e8d8024ef"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:f0febda5-28f8-4a7a-970e-4517c40e4ee5",
+        "@id": "urn:a2983d0b-37f1-46b8-8815-5532cf9dd9f4",
         "Label": "Stat Design",
         "Used": [
-          "urn:9ec24ab3-4b92-46b9-9266-3c5e655db29c",
-          "urn:05b5627a-a04e-4d7c-8a0f-a8208774ad82"
+          "urn:abe0ec4f-41d6-4388-83b3-816399fb430b",
+          "urn:6d9c0313-572b-46d4-acdc-537652e3b978"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_FIR_basis'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.fir.length = 20;\nmatlabbatch{11}.spm.stats.fmri_spec.bases.fir.order = 10;\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_FIR_basis'}",
@@ -216,12 +215,12 @@
         }
       },
       {
-        "@id": "urn:0db9f667-31ec-4cc1-b7d6-ddb0ea21f714",
+        "@id": "urn:3888ab93-e11b-43ed-a1f4-4829a093becf",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:f7d845ee-066a-455c-b70e-0a693a186017"
+          "urn:4663d55e-670a-44cf-94de-46cc8a947ede"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -229,12 +228,12 @@
         }
       },
       {
-        "@id": "urn:6f845091-280e-49cb-9947-2af6d2e7b4d3",
+        "@id": "urn:ae83add3-6da7-4eae-8dfe-79cea4c4d1ac",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:aa3780c6-2017-4f4c-ae10-2b0ec098f095"
+          "urn:b627d50b-31e2-462e-b4f6-a5e381e2a660"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.fcon.name = 'Tone Counting vs Baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.fcon.weights = [1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1];\nmatlabbatch{13}.spm.stats.con.consess{1}.fcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.fcon.name": "'Tone Counting vs Baseline'",
@@ -244,12 +243,12 @@
         }
       },
       {
-        "@id": "urn:ec55145c-0b27-49f5-81ed-59dbe94ca102",
+        "@id": "urn:98a3c2dc-d375-4d4b-b976-391124a62240",
         "Label": "Threshold",
         "Used": [
-          "urn:446e55f7-85e1-46c5-93b0-3352c67424e9"
+          "urn:3cd9afa2-db8f-4e97-8362-708061f8f699"
         ],
-        "AssociatedWith": "urn:6af02df5-827e-4ddf-9b00-baecee725fcd",
+        "AssociatedWith": "urn:634b8ef5-df07-4afc-8509-66a3973abbeb",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -267,7 +266,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:3f5fcc63-c232-47b9-9bfe-231b359c95b9",
+        "@id": "urn:105801bb-7b35-42d6-9ff2-4966a82149c5",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -275,7 +274,7 @@
         }
       },
       {
-        "@id": "urn:e648c12f-577e-426e-b264-ef77b5359fad",
+        "@id": "urn:1ae8f36b-01cf-4052-ac85-d10dc0aa6524",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -283,57 +282,57 @@
         }
       },
       {
-        "@id": "urn:6ed8d342-b419-4019-bef6-278dea44193e",
+        "@id": "urn:d6be4df1-d211-401a-8876-ee0cf6e05ac3",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:7c54373f-c93e-4f5c-b2d9-d3a7b7ea47aa"
+        "GeneratedBy": "urn:083e7a48-1f1e-4a25-8049-d4b80641baae"
       },
       {
-        "@id": "urn:6c68e7db-4b96-4b16-b064-fbf79cad5a41",
+        "@id": "urn:d1e447a7-bec3-421c-b7c3-9138d92c7206",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:3a84825d-17a3-4434-a37e-373c79ae4e45"
+        "GeneratedBy": "urn:dc28ed67-83ae-483a-9eeb-de245979553a"
       },
       {
-        "@id": "urn:aae4ed70-8823-4964-83b4-5d2f17e7fcc3",
+        "@id": "urn:b6722269-67c1-45e2-a55d-94e6e075c7f4",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:949d043a-545a-4b78-b266-8885d981bf99"
+        "GeneratedBy": "urn:45579f06-fc67-4a72-a435-4a2bde6046c2"
       },
       {
-        "@id": "urn:394e603e-0619-459e-a1c1-6dffeac3be20",
+        "@id": "urn:ae25f772-385e-4722-90fd-3d6bca543569",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:a044d7d6-c80d-4b3f-873d-e0fae65af109"
+        "GeneratedBy": "urn:b740cb2c-c571-42cb-92e6-030da5016c8f"
       },
       {
-        "@id": "urn:703d1215-6aca-48fc-b9b0-5ae629fcaade",
+        "@id": "urn:d188f22b-b723-47f5-b94e-a0060df4a500",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:ff7ca2bc-829f-4438-bdcf-a712c5c42578"
+        "GeneratedBy": "urn:bf51fb88-d326-4f30-be43-ab454615eef4"
       },
       {
-        "@id": "urn:a99a3cf5-8910-4304-91cd-19b94fd29c69",
+        "@id": "urn:2a713eec-eb1a-4ace-9328-7e0d28524daa",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:2a83909e-befd-42a8-bfd8-2c3310b0f853",
+        "GeneratedBy": "urn:1f888d36-8dc1-4dd9-aed3-6307c376c266",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:029ac7ce-e0ca-4637-8d00-caec11c22c76",
+        "@id": "urn:fd1d4aff-2275-4cf2-a575-8ee7b01253b0",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:2a83909e-befd-42a8-bfd8-2c3310b0f853",
+        "GeneratedBy": "urn:1f888d36-8dc1-4dd9-aed3-6307c376c266",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:6595ac2d-bf43-4a54-8cd9-f27e08178d8b",
+        "@id": "urn:beff7ab6-7cd1-4cc4-a241-5a6e8d8024ef",
         "Label": "wsegment1",
-        "GeneratedBy": "urn:2eabf927-c80e-4338-b26a-0d07283fc38a"
+        "GeneratedBy": "urn:a46ad4e6-5621-4686-b06f-2f4c85f6fded"
       },
       {
-        "@id": "urn:05b5627a-a04e-4d7c-8a0f-a8208774ad82",
+        "@id": "urn:6d9c0313-572b-46d4-acdc-537652e3b978",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -341,24 +340,24 @@
         }
       },
       {
-        "@id": "urn:9ec24ab3-4b92-46b9-9266-3c5e655db29c",
+        "@id": "urn:abe0ec4f-41d6-4388-83b3-816399fb430b",
         "Label": "swsegment1",
-        "GeneratedBy": "urn:055e6616-8da2-44c5-aeb2-418931734dc0"
+        "GeneratedBy": "urn:e4838222-2b8c-4e52-9bcb-14121cde4681"
       },
       {
-        "@id": "urn:f7d845ee-066a-455c-b70e-0a693a186017",
+        "@id": "urn:4663d55e-670a-44cf-94de-46cc8a947ede",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:f0febda5-28f8-4a7a-970e-4517c40e4ee5"
+        "GeneratedBy": "urn:a2983d0b-37f1-46b8-8815-5532cf9dd9f4"
       },
       {
-        "@id": "urn:aa3780c6-2017-4f4c-ae10-2b0ec098f095",
+        "@id": "urn:b627d50b-31e2-462e-b4f6-a5e381e2a660",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:0db9f667-31ec-4cc1-b7d6-ddb0ea21f714"
+        "GeneratedBy": "urn:3888ab93-e11b-43ed-a1f4-4829a093becf"
       },
       {
-        "@id": "urn:446e55f7-85e1-46c5-93b0-3352c67424e9",
+        "@id": "urn:3cd9afa2-db8f-4e97-8362-708061f8f699",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:6f845091-280e-49cb-9947-2af6d2e7b4d3"
+        "GeneratedBy": "urn:ae83add3-6da7-4eae-8dfe-79cea4c4d1ac"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_non_sphericity_batch.jsonld b/examples/from_parsers/spm/spm_non_sphericity_batch.jsonld
index 319b528e2..8bd06a3a2 100644
--- a/examples/from_parsers/spm/spm_non_sphericity_batch.jsonld
+++ b/examples/from_parsers/spm/spm_non_sphericity_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:aaa99efc-93c1-456f-a46e-49bb69396a9d",
+        "@id": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,10 +13,10 @@
     ],
     "Activities": [
       {
-        "@id": "urn:eefd5f21-3c8d-40a0-bac6-7edd58d696ea",
+        "@id": "urn:b02e72d6-09fc-41b9-b8c1-24d50bab9a4a",
         "Label": "stats.factorial_design",
         "Used": [],
-        "AssociatedWith": "urn:aaa99efc-93c1-456f-a46e-49bb69396a9d",
+        "AssociatedWith": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
         "Command": "matlabbatch{1}.spm.stats.factorial_design.dir = {'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Group/Informed'};\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.fact.name = 'Basis';\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.fact.levels = 3;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.fact.dept = 1;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.fact.variance = 1;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.fact.gmsca = 0;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.fact.ancova = 0;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.icell(1).levels = 1;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.icell(1).scans = {'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub01/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub02/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub03/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub04/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub05/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub06/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub07/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub08/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub09/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub10/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub11/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub12/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub13/CanonicalHRF/con_0001.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub14/CanonicalHRF/con_0001.nii,1',};\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.icell(2).levels = 2;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.icell(2).scans = {'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub01/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub02/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub03/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub04/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub05/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub06/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub07/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub08/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub09/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub10/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub11/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub12/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub13/CanonicalHRF/con_0005.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub14/CanonicalHRF/con_0005.nii,1',};\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.icell(3).levels = 3;\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.icell(3).scans = {'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub01/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub02/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub03/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub04/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub05/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub06/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub07/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub08/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub09/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub10/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub11/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub12/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub13/CanonicalHRF/con_0009.nii,1','/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Sub14/CanonicalHRF/con_0009.nii,1',};\nmatlabbatch{1}.spm.stats.factorial_design.des.fd.contrasts = 1;\nmatlabbatch{1}.spm.stats.factorial_design.cov = struct('c', {}, 'cname', {}, 'iCFI', {}, 'iCC', {});\nmatlabbatch{1}.spm.stats.factorial_design.multi_cov = struct('files', {}, 'iCFI', {}, 'iCC', {});\nmatlabbatch{1}.spm.stats.factorial_design.masking.tm.tm_none = 1;\nmatlabbatch{1}.spm.stats.factorial_design.masking.im = 1;\nmatlabbatch{1}.spm.stats.factorial_design.masking.em = {''};\nmatlabbatch{1}.spm.stats.factorial_design.globalc.g_omit = 1;\nmatlabbatch{1}.spm.stats.factorial_design.globalm.gmsca.gmsca_no = 1;\nmatlabbatch{1}.spm.stats.factorial_design.globalm.glonorm = 1;",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/Testing/ds000006/RESULTS/Group/Informed'}",
@@ -44,12 +44,12 @@
         }
       },
       {
-        "@id": "urn:1abedd81-306e-4748-aebb-1f5e42437347",
+        "@id": "urn:30e03dcc-204f-4159-afcc-fcd7efe4664d",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:73ab640b-ef65-4907-abc4-6d68bf3b2bf8"
+          "urn:66596f41-21e7-4190-82a8-de0697b8d0c6"
         ],
-        "AssociatedWith": "urn:aaa99efc-93c1-456f-a46e-49bb69396a9d",
+        "AssociatedWith": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
         "Command": "matlabbatch{2}.spm.stats.fmri_est.spmmat(1) = cfg_dep('Factorial design specification: SPM.mat File', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{2}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{2}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -57,12 +57,12 @@
         }
       },
       {
-        "@id": "urn:eca62f47-2d02-415d-bf7d-769f76277959",
+        "@id": "urn:d56be92e-40d9-463a-9e7e-2b14886091df",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:e9ee1116-9225-47b0-8405-d050722eeb4e"
+          "urn:8b77e7f5-fa5d-43fe-a8c3-caf66c861b43"
         ],
-        "AssociatedWith": "urn:aaa99efc-93c1-456f-a46e-49bb69396a9d",
+        "AssociatedWith": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
         "Command": "matlabbatch{3}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.name = 'mr vs plain informed basis';\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.weights = 1;\nmatlabbatch{3}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{3}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'mr vs plain informed basis'",
@@ -72,12 +72,12 @@
         }
       },
       {
-        "@id": "urn:9b7413de-84c5-4192-89bf-80266e1ab5ee",
+        "@id": "urn:df94604f-7f06-4143-9b98-e624dab2dc66",
         "Label": "Threshold",
         "Used": [
-          "urn:839c0971-255e-4c75-9e1a-542046cca671"
+          "urn:b5bb999c-2c05-4151-8a2a-4fec1f086e87"
         ],
-        "AssociatedWith": "urn:aaa99efc-93c1-456f-a46e-49bb69396a9d",
+        "AssociatedWith": "urn:5808802e-2ed8-4307-966b-e5ca05b9ce35",
         "Command": "matlabbatch{4}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{4}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{4}.spm.stats.results.conspec.contrasts = 1;\nmatlabbatch{4}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{4}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{4}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{4}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{4}.spm.stats.results.units = 1;\nmatlabbatch{4}.spm.stats.results.print = 'pdf';\nmatlabbatch{4}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -94,19 +94,19 @@
     ],
     "Entities": [
       {
-        "@id": "urn:73ab640b-ef65-4907-abc4-6d68bf3b2bf8",
+        "@id": "urn:66596f41-21e7-4190-82a8-de0697b8d0c6",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:eefd5f21-3c8d-40a0-bac6-7edd58d696ea"
+        "GeneratedBy": "urn:b02e72d6-09fc-41b9-b8c1-24d50bab9a4a"
       },
       {
-        "@id": "urn:e9ee1116-9225-47b0-8405-d050722eeb4e",
+        "@id": "urn:8b77e7f5-fa5d-43fe-a8c3-caf66c861b43",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:1abedd81-306e-4748-aebb-1f5e42437347"
+        "GeneratedBy": "urn:30e03dcc-204f-4159-afcc-fcd7efe4664d"
       },
       {
-        "@id": "urn:839c0971-255e-4c75-9e1a-542046cca671",
+        "@id": "urn:b5bb999c-2c05-4151-8a2a-4fec1f086e87",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:eca62f47-2d02-415d-bf7d-769f76277959"
+        "GeneratedBy": "urn:d56be92e-40d9-463a-9e7e-2b14886091df"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_partial_conjunction_batch.jsonld b/examples/from_parsers/spm/spm_partial_conjunction_batch.jsonld
index ce70ad217..18d129708 100644
--- a/examples/from_parsers/spm/spm_partial_conjunction_batch.jsonld
+++ b/examples/from_parsers/spm/spm_partial_conjunction_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "@id": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:2539ee99-f909-4188-b2db-41208e64f1fc",
+        "@id": "urn:9fc79763-50ca-44d0-af53-ea663f18a6c9",
         "Label": "Move file",
         "Used": [
-          "urn:cd71ca90-9d31-4ea5-8682-c1ffa03bd643"
+          "urn:d816bf62-f91e-4d89-af7d-9078d2f8bc45"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:28dda7e2-20ef-4432-8591-f8a7685dfa2c",
+        "@id": "urn:f268d524-4ea7-4ace-aa2e-80e6941b108d",
         "Label": "Move file",
         "Used": [
-          "urn:e2ea16a5-484e-40af-a288-0b67e8bad57d"
+          "urn:a6e50cb0-3790-46cd-97c4-6108afc39afe"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:72873482-a03b-4df2-a3cf-7cbffadb3ca7",
+        "@id": "urn:8abe0474-66d5-4e8d-b799-4ca935562832",
         "Label": "Gunzip",
         "Used": [
-          "urn:5a798d51-b0f0-4d2e-81da-8f835a289d93"
+          "urn:247e6f18-0048-4538-afb0-c248e2ba36cf"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:7f373576-0167-4294-9e8a-e15cfad9516b",
+        "@id": "urn:a05bcc8c-767e-4ef9-ad52-82fdcf352918",
         "Label": "Gunzip",
         "Used": [
-          "urn:8728fc5c-5b88-4df7-8a17-9a0db37977b2"
+          "urn:9c9633d5-e312-4218-beaf-ee48cdb1b684"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:a022eaa3-cbe6-449f-ad71-de6f40c3385b",
+        "@id": "urn:2f2e9df1-ab83-49ff-bf11-f4b440a61b43",
         "Label": "Realign",
         "Used": [
-          "urn:114e3532-8f75-43c4-8325-0411b3f2d898"
+          "urn:e6777837-2f7c-4cb1-ab0f-9ad45c985501"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:d4caa5e8-8399-4a90-8650-f7ddb831f026",
+        "@id": "urn:8a4b04a5-355c-436b-a9cd-d1ba1623a3de",
         "Label": "Coregister",
         "Used": [
-          "urn:354f9b5f-7299-4cb0-ac4f-d336008774f5",
-          "urn:519fc1f0-12e8-4d55-8221-a9a1782415ef"
+          "urn:32ee6bc3-7996-47c5-ba5d-ad3dae831538",
+          "urn:63c66930-7e3d-4eee-a6b2-45f96119bb14"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:9981c55e-0d2a-4cac-8dac-2cbbc84e1fef",
+        "@id": "urn:0b11c98b-cb04-4ad6-943f-b7e64be5838a",
         "Label": "Segment",
         "Used": [
-          "urn:519fc1f0-12e8-4d55-8221-a9a1782415ef"
+          "urn:32ee6bc3-7996-47c5-ba5d-ad3dae831538"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:9c9da777-12ff-4a63-9181-3e25fe6bc696",
+        "@id": "urn:617710f9-1f1a-416f-ae6b-d2994da8000b",
         "Label": "Normalize",
         "Used": [
-          "urn:b3724df6-ae51-4816-9a81-72b912549083",
-          "urn:354f9b5f-7299-4cb0-ac4f-d336008774f5"
+          "urn:63c66930-7e3d-4eee-a6b2-45f96119bb14",
+          "urn:6f513969-f03e-43be-a09b-5dd6b976de3c"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:b7832027-315a-4c02-a724-80f5aec4ff08",
+        "@id": "urn:9734bf62-20af-427c-a298-49437e993740",
         "Label": "Normalize",
         "Used": [
-          "urn:b3724df6-ae51-4816-9a81-72b912549083",
-          "urn:b3724df6-ae51-4816-9a81-72b912549083"
+          "urn:6f513969-f03e-43be-a09b-5dd6b976de3c"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:692f3e44-6c57-4be4-bf7f-74b19df5f43a",
+        "@id": "urn:8f862f58-0135-443a-84b8-7d315d0751e5",
         "Label": "Smooth",
         "Used": [
-          "urn:153521cf-ee7b-4e10-bd52-013f29c11e90"
+          "urn:8683b331-474b-43db-938a-3fb2df8077ff"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:120c218e-37ec-43c4-bf0b-6e126b10530e",
+        "@id": "urn:dbb688bc-e370-4644-9913-9ae6f2e86ecb",
         "Label": "Stat Design",
         "Used": [
-          "urn:dfa1c116-dd9b-4a89-b521-148073f45dd4",
-          "urn:eedd8373-eafa-4cf2-bc65-202f4d903685"
+          "urn:ebb912a3-bf02-4ba8-9363-a5e83909e65a",
+          "urn:7cf453df-7e7b-4f99-8439-7859bdc17e52"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_conjunction'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_conjunction'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:58a0bcbe-1a89-4d93-95a4-f2d11389d2cc",
+        "@id": "urn:66b30f36-6225-462e-8ad6-27c5ecd6af06",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:30d334d5-deab-42e5-9cbb-057d7178ec11"
+          "urn:49b19b62-af92-47fa-8c77-2337c2f05775"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:2e7213f6-355a-4ced-bbb1-e8f542da6c7c",
+        "@id": "urn:67cafc9e-cf08-49e6-ab5b-e48caba9edf8",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:3f92f1e1-053e-48b9-98b9-7e3b9031e479"
+          "urn:2aafb6ce-d198-41d6-ab3e-16b28401a64a"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.name = 'tone counting probe vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.weights = [0 1];\nmatlabbatch{13}.spm.stats.con.consess{2}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -246,12 +245,12 @@
         }
       },
       {
-        "@id": "urn:02698ac9-da6d-4217-9431-10597a420395",
+        "@id": "urn:f9d61dcc-d611-48da-8113-8e5d940d45bf",
         "Label": "Threshold",
         "Used": [
-          "urn:05716378-72ce-45f4-9cc1-67651f934dad"
+          "urn:678f852c-890c-4abc-bf0a-1e737c5189bc"
         ],
-        "AssociatedWith": "urn:f3ad61b2-b139-4bad-a97d-9573066dfecf",
+        "AssociatedWith": "urn:09ebc5dc-0466-4923-bd49-13831d041c86",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = [1 2];\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 2;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -269,7 +268,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:cd71ca90-9d31-4ea5-8682-c1ffa03bd643",
+        "@id": "urn:d816bf62-f91e-4d89-af7d-9078d2f8bc45",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -277,7 +276,7 @@
         }
       },
       {
-        "@id": "urn:e2ea16a5-484e-40af-a288-0b67e8bad57d",
+        "@id": "urn:a6e50cb0-3790-46cd-97c4-6108afc39afe",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -285,57 +284,57 @@
         }
       },
       {
-        "@id": "urn:5a798d51-b0f0-4d2e-81da-8f835a289d93",
+        "@id": "urn:247e6f18-0048-4538-afb0-c248e2ba36cf",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:2539ee99-f909-4188-b2db-41208e64f1fc"
+        "GeneratedBy": "urn:9fc79763-50ca-44d0-af53-ea663f18a6c9"
       },
       {
-        "@id": "urn:8728fc5c-5b88-4df7-8a17-9a0db37977b2",
+        "@id": "urn:9c9633d5-e312-4218-beaf-ee48cdb1b684",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:28dda7e2-20ef-4432-8591-f8a7685dfa2c"
+        "GeneratedBy": "urn:f268d524-4ea7-4ace-aa2e-80e6941b108d"
       },
       {
-        "@id": "urn:114e3532-8f75-43c4-8325-0411b3f2d898",
+        "@id": "urn:e6777837-2f7c-4cb1-ab0f-9ad45c985501",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:72873482-a03b-4df2-a3cf-7cbffadb3ca7"
+        "GeneratedBy": "urn:8abe0474-66d5-4e8d-b799-4ca935562832"
       },
       {
-        "@id": "urn:354f9b5f-7299-4cb0-ac4f-d336008774f5",
+        "@id": "urn:63c66930-7e3d-4eee-a6b2-45f96119bb14",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:a022eaa3-cbe6-449f-ad71-de6f40c3385b"
+        "GeneratedBy": "urn:2f2e9df1-ab83-49ff-bf11-f4b440a61b43"
       },
       {
-        "@id": "urn:519fc1f0-12e8-4d55-8221-a9a1782415ef",
+        "@id": "urn:32ee6bc3-7996-47c5-ba5d-ad3dae831538",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:7f373576-0167-4294-9e8a-e15cfad9516b"
+        "GeneratedBy": "urn:a05bcc8c-767e-4ef9-ad52-82fdcf352918"
       },
       {
-        "@id": "urn:b3724df6-ae51-4816-9a81-72b912549083",
+        "@id": "urn:6f513969-f03e-43be-a09b-5dd6b976de3c",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:9981c55e-0d2a-4cac-8dac-2cbbc84e1fef",
+        "GeneratedBy": "urn:0b11c98b-cb04-4ad6-943f-b7e64be5838a",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:ec3229a5-b849-4c4b-b171-3c3e320464b3",
+        "@id": "urn:a85d6e1c-9519-48a0-9494-5592eb2b8506",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:9981c55e-0d2a-4cac-8dac-2cbbc84e1fef",
+        "GeneratedBy": "urn:0b11c98b-cb04-4ad6-943f-b7e64be5838a",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:153521cf-ee7b-4e10-bd52-013f29c11e90",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:9c9da777-12ff-4a63-9181-3e25fe6bc696"
+        "@id": "urn:8683b331-474b-43db-938a-3fb2df8077ff",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:617710f9-1f1a-416f-ae6b-d2994da8000b"
       },
       {
-        "@id": "urn:eedd8373-eafa-4cf2-bc65-202f4d903685",
+        "@id": "urn:7cf453df-7e7b-4f99-8439-7859bdc17e52",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -343,24 +342,24 @@
         }
       },
       {
-        "@id": "urn:dfa1c116-dd9b-4a89-b521-148073f45dd4",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:692f3e44-6c57-4be4-bf7f-74b19df5f43a"
+        "@id": "urn:ebb912a3-bf02-4ba8-9363-a5e83909e65a",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:8f862f58-0135-443a-84b8-7d315d0751e5"
       },
       {
-        "@id": "urn:30d334d5-deab-42e5-9cbb-057d7178ec11",
+        "@id": "urn:49b19b62-af92-47fa-8c77-2337c2f05775",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:120c218e-37ec-43c4-bf0b-6e126b10530e"
+        "GeneratedBy": "urn:dbb688bc-e370-4644-9913-9ae6f2e86ecb"
       },
       {
-        "@id": "urn:3f92f1e1-053e-48b9-98b9-7e3b9031e479",
+        "@id": "urn:2aafb6ce-d198-41d6-ab3e-16b28401a64a",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:58a0bcbe-1a89-4d93-95a4-f2d11389d2cc"
+        "GeneratedBy": "urn:66b30f36-6225-462e-8ad6-27c5ecd6af06"
       },
       {
-        "@id": "urn:05716378-72ce-45f4-9cc1-67651f934dad",
+        "@id": "urn:678f852c-890c-4abc-bf0a-1e737c5189bc",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:2e7213f6-355a-4ced-bbb1-e8f542da6c7c"
+        "GeneratedBy": "urn:67cafc9e-cf08-49e6-ab5b-e48caba9edf8"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_temporal_derivative_batch.jsonld b/examples/from_parsers/spm/spm_temporal_derivative_batch.jsonld
index 54cbdac58..e72b9bc54 100644
--- a/examples/from_parsers/spm/spm_temporal_derivative_batch.jsonld
+++ b/examples/from_parsers/spm/spm_temporal_derivative_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "@id": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:d9b8abfc-a4b9-496b-8b36-c94c5334f87e",
+        "@id": "urn:9514e444-af9c-4649-b1e3-f2b7371e2ff3",
         "Label": "Move file",
         "Used": [
-          "urn:83b1c647-25a9-4c03-897b-14beedad3f17"
+          "urn:70787460-c0e9-4624-a974-df03ea059fd7"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:3b79334f-2482-4ea7-94d4-6e6090623211",
+        "@id": "urn:a68a1574-7b09-437f-b75a-2c7214dbf8c6",
         "Label": "Move file",
         "Used": [
-          "urn:7c5b9650-7b6e-4d59-a889-e62a51997c2d"
+          "urn:bbdd547f-1200-4863-9dda-efa4d1e55184"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:055baac7-d18b-486b-8f9e-4cf47f891f28",
+        "@id": "urn:000439d2-1c29-420d-974e-96ebf05bc13c",
         "Label": "Gunzip",
         "Used": [
-          "urn:f7d52db8-8d49-4e3f-8fcc-4b0b01aec0f6"
+          "urn:02775417-0217-4d74-8e8a-e0541b4e1a0b"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:c5395310-027f-446c-b24c-f11c73d4fb25",
+        "@id": "urn:0c6b3aeb-06f8-4e6b-b3ed-88acdbf9e0e6",
         "Label": "Gunzip",
         "Used": [
-          "urn:86485d38-a418-4ae6-8399-a66c472f8a04"
+          "urn:2e107129-9700-4d13-a0b4-5ed8786d98ef"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:4879466b-3b4a-48aa-8a01-b92df00778fe",
+        "@id": "urn:eb67c517-fe9a-4f7c-b7b0-36247be03247",
         "Label": "Realign",
         "Used": [
-          "urn:f6eacf00-2ad7-46ea-b5f3-43d8902e19fd"
+          "urn:cfc270b2-011d-4313-9bf2-42cf99099862"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:0eef9786-fe6e-44cf-a869-6c0bdb1489fe",
+        "@id": "urn:63697e02-287b-45a2-bb20-41e265601261",
         "Label": "Coregister",
         "Used": [
-          "urn:405ba133-a53b-4f71-9b03-4bbd69aa27c1",
-          "urn:6931cd5d-dcc9-413c-beb2-c8f59fc9c740"
+          "urn:40eadda9-3a59-49a2-85e1-185be44acf98",
+          "urn:d64426fc-7163-4fcf-ab12-74eda9c93e1d"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:db9ba97e-dc78-4984-ba0a-f5e433a02af3",
+        "@id": "urn:f63e0e3f-899b-4267-9ba8-15f26febbb07",
         "Label": "Segment",
         "Used": [
-          "urn:6931cd5d-dcc9-413c-beb2-c8f59fc9c740"
+          "urn:d64426fc-7163-4fcf-ab12-74eda9c93e1d"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:4affc0e0-f2f6-410c-98cd-dda7019b68ed",
+        "@id": "urn:bcdad7b0-1900-445e-a58d-7cdbd0dd9cfc",
         "Label": "Normalize",
         "Used": [
-          "urn:e3840d53-c269-4367-a295-a866e6a568b5",
-          "urn:405ba133-a53b-4f71-9b03-4bbd69aa27c1"
+          "urn:40eadda9-3a59-49a2-85e1-185be44acf98",
+          "urn:eba38419-a546-4321-8e0a-8f3a41271a29"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:260212da-3b7a-4a16-ba6c-820e5c061d98",
+        "@id": "urn:8b43fbba-524d-468c-87ea-c55ad1d6a24f",
         "Label": "Normalize",
         "Used": [
-          "urn:e3840d53-c269-4367-a295-a866e6a568b5",
-          "urn:e3840d53-c269-4367-a295-a866e6a568b5"
+          "urn:eba38419-a546-4321-8e0a-8f3a41271a29"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:2c2f9da6-1898-4f9a-b578-ed76c37eddd4",
+        "@id": "urn:d8775774-929a-4f81-8fcb-6ba1f916e161",
         "Label": "Smooth",
         "Used": [
-          "urn:0add8a2e-685b-4ffb-b51c-33fe56d30fa7"
+          "urn:e8191e7e-8505-4e9d-afc8-41e2324eb4dc"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:66f8141e-8fd0-4ffc-9853-8005134fb5f4",
+        "@id": "urn:53f02519-829b-4f61-9838-40048b816257",
         "Label": "Stat Design",
         "Used": [
-          "urn:f0961f03-78cc-43e3-b7c3-fda09a73d42c",
-          "urn:fc2b1774-c34b-4a1f-9d9b-3fd5d889cd04"
+          "urn:379036c0-95c2-499c-aecc-8b2362a9a19f",
+          "urn:8dc8374c-cbe1-47f8-9d6a-39ae8a5ebb34"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_temporal_derivative'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [1 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_temporal_derivative'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:d8674169-2dfa-45af-ae52-683c72874335",
+        "@id": "urn:df826b1c-74a5-4f67-be42-d15657ccada8",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:472415a7-8fa4-47d7-90a9-d77af101c59b"
+          "urn:938163b7-bf0d-40c8-8a24-9c77029d9a41"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:22c77196-50f1-4441-b41b-4a8abad44eb9",
+        "@id": "urn:c6aa20f8-dfc4-434c-b06e-e6740edb0f2e",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:235e03ab-4e6d-43fa-947c-18213c5b8159"
+          "urn:5ec304ae-9211-417c-9b97-ef828474c68b"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0 0 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:b99d477f-b343-4baf-a037-4bd3d873e359",
+        "@id": "urn:f89adc01-8d5d-425a-aff9-c4b6634b5ec2",
         "Label": "Threshold",
         "Used": [
-          "urn:79e151a5-c648-4cae-93dd-b4eaa7c60136"
+          "urn:cdeffd5b-2823-49f0-9667-028119716d19"
         ],
-        "AssociatedWith": "urn:815262c7-f8be-4a52-a3f7-b7110b0a1f1a",
+        "AssociatedWith": "urn:bdf545f3-a058-4328-9ee9-0e77526c0c60",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.none = 1;",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:83b1c647-25a9-4c03-897b-14beedad3f17",
+        "@id": "urn:70787460-c0e9-4624-a974-df03ea059fd7",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:7c5b9650-7b6e-4d59-a889-e62a51997c2d",
+        "@id": "urn:bbdd547f-1200-4863-9dda-efa4d1e55184",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:f7d52db8-8d49-4e3f-8fcc-4b0b01aec0f6",
+        "@id": "urn:02775417-0217-4d74-8e8a-e0541b4e1a0b",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:d9b8abfc-a4b9-496b-8b36-c94c5334f87e"
+        "GeneratedBy": "urn:9514e444-af9c-4649-b1e3-f2b7371e2ff3"
       },
       {
-        "@id": "urn:86485d38-a418-4ae6-8399-a66c472f8a04",
+        "@id": "urn:2e107129-9700-4d13-a0b4-5ed8786d98ef",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:3b79334f-2482-4ea7-94d4-6e6090623211"
+        "GeneratedBy": "urn:a68a1574-7b09-437f-b75a-2c7214dbf8c6"
       },
       {
-        "@id": "urn:f6eacf00-2ad7-46ea-b5f3-43d8902e19fd",
+        "@id": "urn:cfc270b2-011d-4313-9bf2-42cf99099862",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:055baac7-d18b-486b-8f9e-4cf47f891f28"
+        "GeneratedBy": "urn:000439d2-1c29-420d-974e-96ebf05bc13c"
       },
       {
-        "@id": "urn:405ba133-a53b-4f71-9b03-4bbd69aa27c1",
+        "@id": "urn:40eadda9-3a59-49a2-85e1-185be44acf98",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:4879466b-3b4a-48aa-8a01-b92df00778fe"
+        "GeneratedBy": "urn:eb67c517-fe9a-4f7c-b7b0-36247be03247"
       },
       {
-        "@id": "urn:6931cd5d-dcc9-413c-beb2-c8f59fc9c740",
+        "@id": "urn:d64426fc-7163-4fcf-ab12-74eda9c93e1d",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:c5395310-027f-446c-b24c-f11c73d4fb25"
+        "GeneratedBy": "urn:0c6b3aeb-06f8-4e6b-b3ed-88acdbf9e0e6"
       },
       {
-        "@id": "urn:e3840d53-c269-4367-a295-a866e6a568b5",
+        "@id": "urn:eba38419-a546-4321-8e0a-8f3a41271a29",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:db9ba97e-dc78-4984-ba0a-f5e433a02af3",
+        "GeneratedBy": "urn:f63e0e3f-899b-4267-9ba8-15f26febbb07",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:15e50e77-cee7-49b7-9400-55c59f732a08",
+        "@id": "urn:79b5c51c-cfa6-40c1-9e81-1278998966c7",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:db9ba97e-dc78-4984-ba0a-f5e433a02af3",
+        "GeneratedBy": "urn:f63e0e3f-899b-4267-9ba8-15f26febbb07",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:0add8a2e-685b-4ffb-b51c-33fe56d30fa7",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:4affc0e0-f2f6-410c-98cd-dda7019b68ed"
+        "@id": "urn:e8191e7e-8505-4e9d-afc8-41e2324eb4dc",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:bcdad7b0-1900-445e-a58d-7cdbd0dd9cfc"
       },
       {
-        "@id": "urn:fc2b1774-c34b-4a1f-9d9b-3fd5d889cd04",
+        "@id": "urn:8dc8374c-cbe1-47f8-9d6a-39ae8a5ebb34",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:f0961f03-78cc-43e3-b7c3-fda09a73d42c",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:2c2f9da6-1898-4f9a-b578-ed76c37eddd4"
+        "@id": "urn:379036c0-95c2-499c-aecc-8b2362a9a19f",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:d8775774-929a-4f81-8fcb-6ba1f916e161"
       },
       {
-        "@id": "urn:472415a7-8fa4-47d7-90a9-d77af101c59b",
+        "@id": "urn:938163b7-bf0d-40c8-8a24-9c77029d9a41",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:66f8141e-8fd0-4ffc-9853-8005134fb5f4"
+        "GeneratedBy": "urn:53f02519-829b-4f61-9838-40048b816257"
       },
       {
-        "@id": "urn:235e03ab-4e6d-43fa-947c-18213c5b8159",
+        "@id": "urn:5ec304ae-9211-417c-9b97-ef828474c68b",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:d8674169-2dfa-45af-ae52-683c72874335"
+        "GeneratedBy": "urn:df826b1c-74a5-4f67-be42-d15657ccada8"
       },
       {
-        "@id": "urn:79e151a5-c648-4cae-93dd-b4eaa7c60136",
+        "@id": "urn:cdeffd5b-2823-49f0-9667-028119716d19",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:22c77196-50f1-4441-b41b-4a8abad44eb9"
+        "GeneratedBy": "urn:c6aa20f8-dfc4-434c-b06e-e6740edb0f2e"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_thr_clustfwep05_batch.jsonld b/examples/from_parsers/spm/spm_thr_clustfwep05_batch.jsonld
index e01f19bd3..bd107878d 100644
--- a/examples/from_parsers/spm/spm_thr_clustfwep05_batch.jsonld
+++ b/examples/from_parsers/spm/spm_thr_clustfwep05_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "@id": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:5d0a7512-806e-4183-a0d2-a32c710120e5",
+        "@id": "urn:d2bdd17d-7e8f-4856-b026-90a880f4ba20",
         "Label": "Move file",
         "Used": [
-          "urn:1180ec80-cd33-484a-a50e-f69f9498ef73"
+          "urn:1769375c-a644-4521-8e10-264cfa898796"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:7ab4fccc-8b12-41ff-9bf3-24a5c9e6adcc",
+        "@id": "urn:a878b257-a9ba-4bcb-bec8-cff004db2580",
         "Label": "Move file",
         "Used": [
-          "urn:70e729c9-db06-459c-955c-37465b487ff4"
+          "urn:76ed4182-2eb5-43bc-85a5-03cd518dc93e"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:a31ea3d9-4c28-48eb-8885-2f4d2fb8a62a",
+        "@id": "urn:7d491214-e521-46a8-9f52-733c5d4835b5",
         "Label": "Gunzip",
         "Used": [
-          "urn:a2836735-4d3b-45d7-8aa6-2414149e2686"
+          "urn:0d96712d-754c-4811-b72f-475acab451eb"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:53cd4a1b-2c9f-47d9-ab78-307d86656924",
+        "@id": "urn:c36375b8-841e-4bbd-a26e-921ddc5f074a",
         "Label": "Gunzip",
         "Used": [
-          "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c"
+          "urn:234b8167-b51f-4a3f-96a0-d7b22611b93b"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:f921fdf0-acde-4ee9-bd00-c633b56c947a",
+        "@id": "urn:2b5a4047-ae13-4ad8-a91e-4bbedd00ee70",
         "Label": "Realign",
         "Used": [
-          "urn:86648548-ef86-4c65-acb2-f66f919cd602"
+          "urn:c0c5482a-7a18-4535-99df-1f2f4b42155f"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:dcea32e9-2cae-4ca0-9633-d89c8f6be7cf",
+        "@id": "urn:ad783a8d-3eff-4062-aaaa-b0da2153285b",
         "Label": "Coregister",
         "Used": [
-          "urn:f5c8f6a7-13a4-431b-b55a-15d9f2c3c417",
-          "urn:084c8aad-390c-4fff-80c9-7ccc864e86c2"
+          "urn:ba73f7d7-f70a-4503-aafa-a70b10d74b93",
+          "urn:ecb6bbdc-7c07-4bf7-aab1-114ab87660c3"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:0ebd0fc1-2b07-46fe-a567-1b4fd6b693e8",
+        "@id": "urn:bc1a2433-b20b-499f-8b99-a202af1012f2",
         "Label": "Segment",
         "Used": [
-          "urn:084c8aad-390c-4fff-80c9-7ccc864e86c2"
+          "urn:ecb6bbdc-7c07-4bf7-aab1-114ab87660c3"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:d1b9bc98-a253-4e9f-b88e-3c5199b9250d",
+        "@id": "urn:5b0ca4be-398b-4a17-bcfd-4979613d6409",
         "Label": "Normalize",
         "Used": [
-          "urn:b084ad3a-cf4b-47a4-83e6-06f3eae198c9",
-          "urn:f5c8f6a7-13a4-431b-b55a-15d9f2c3c417"
+          "urn:300db58b-407a-44d5-a5bc-4ae178718157",
+          "urn:ba73f7d7-f70a-4503-aafa-a70b10d74b93"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:ebfc60aa-ebdc-489d-b125-9a6ebd44b366",
+        "@id": "urn:a1c94e5e-a659-4d81-a097-4534955c9cb6",
         "Label": "Normalize",
         "Used": [
-          "urn:b084ad3a-cf4b-47a4-83e6-06f3eae198c9",
-          "urn:b084ad3a-cf4b-47a4-83e6-06f3eae198c9"
+          "urn:300db58b-407a-44d5-a5bc-4ae178718157"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:8071b9d4-edae-48cb-b60c-e1e182cdb126",
+        "@id": "urn:1e21013c-20db-4252-9699-71e73b1cfd0e",
         "Label": "Smooth",
         "Used": [
-          "urn:d29f9314-7a2c-4522-b097-5402aba8a5b4"
+          "urn:3617818b-fc3c-4106-a1dc-5fd3c152eb59"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:49eb3ff6-0436-43d9-9cfc-339740c5b001",
+        "@id": "urn:c5da5238-d255-4788-8c65-a97fbad74c2e",
         "Label": "Stat Design",
         "Used": [
-          "urn:45a94e0b-8133-4a06-adc8-255c202a5ec4",
-          "urn:f0ac745d-d240-49a4-994a-fd65bc220312"
+          "urn:c0b2dc25-6399-41b4-8c90-2115b9a9c877",
+          "urn:2cf1aad2-75e7-427d-8859-f4a294b39611"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_cluster_p005'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_cluster_p005'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:5bc060d9-573c-49a3-8f8c-52ede444f022",
+        "@id": "urn:298d54e4-1c6b-48c3-94f7-7d82fa1b91b7",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:9d1c9415-3cd9-4368-bd8f-7728c4442b1e"
+          "urn:110ea3e4-213d-4c0f-b3d4-095ffe94e454"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:de17c456-a14f-44bc-9ce1-63dc7817d3c6",
+        "@id": "urn:9cc3040c-923c-4223-bcdc-65e44e3724df",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:aa6e479e-739d-4039-8bea-d0c16c229162"
+          "urn:afb793a2-e11b-40df-bbab-7c55f13dce6f"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:4d9e2482-55d7-4b91-bbc7-09a94bcb01e2",
+        "@id": "urn:b983d8d0-a46d-4ad5-9e44-2803c2bba417",
         "Label": "Threshold",
         "Used": [
-          "urn:9476c583-64c7-4981-835b-573862b1757d"
+          "urn:edb51084-4e7e-41bf-a92f-7012c0d532dd"
         ],
-        "AssociatedWith": "urn:0f7dcc16-674e-4c5c-b23d-eb183b3d75b1",
+        "AssociatedWith": "urn:15230b74-4ca6-46fd-b1af-f3fc88d9eaae",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 116;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:1180ec80-cd33-484a-a50e-f69f9498ef73",
+        "@id": "urn:1769375c-a644-4521-8e10-264cfa898796",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:70e729c9-db06-459c-955c-37465b487ff4",
+        "@id": "urn:76ed4182-2eb5-43bc-85a5-03cd518dc93e",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:a2836735-4d3b-45d7-8aa6-2414149e2686",
+        "@id": "urn:0d96712d-754c-4811-b72f-475acab451eb",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:5d0a7512-806e-4183-a0d2-a32c710120e5"
+        "GeneratedBy": "urn:d2bdd17d-7e8f-4856-b026-90a880f4ba20"
       },
       {
-        "@id": "urn:495b1d53-fc03-4a92-a295-05cc097f1f0c",
+        "@id": "urn:234b8167-b51f-4a3f-96a0-d7b22611b93b",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:7ab4fccc-8b12-41ff-9bf3-24a5c9e6adcc"
+        "GeneratedBy": "urn:a878b257-a9ba-4bcb-bec8-cff004db2580"
       },
       {
-        "@id": "urn:86648548-ef86-4c65-acb2-f66f919cd602",
+        "@id": "urn:c0c5482a-7a18-4535-99df-1f2f4b42155f",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:a31ea3d9-4c28-48eb-8885-2f4d2fb8a62a"
+        "GeneratedBy": "urn:7d491214-e521-46a8-9f52-733c5d4835b5"
       },
       {
-        "@id": "urn:f5c8f6a7-13a4-431b-b55a-15d9f2c3c417",
+        "@id": "urn:ba73f7d7-f70a-4503-aafa-a70b10d74b93",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:f921fdf0-acde-4ee9-bd00-c633b56c947a"
+        "GeneratedBy": "urn:2b5a4047-ae13-4ad8-a91e-4bbedd00ee70"
       },
       {
-        "@id": "urn:084c8aad-390c-4fff-80c9-7ccc864e86c2",
+        "@id": "urn:ecb6bbdc-7c07-4bf7-aab1-114ab87660c3",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:53cd4a1b-2c9f-47d9-ab78-307d86656924"
+        "GeneratedBy": "urn:c36375b8-841e-4bbd-a26e-921ddc5f074a"
       },
       {
-        "@id": "urn:b084ad3a-cf4b-47a4-83e6-06f3eae198c9",
+        "@id": "urn:300db58b-407a-44d5-a5bc-4ae178718157",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:0ebd0fc1-2b07-46fe-a567-1b4fd6b693e8",
+        "GeneratedBy": "urn:bc1a2433-b20b-499f-8b99-a202af1012f2",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:6dbb1a27-4df6-42d4-8e0b-1e76dba609b0",
+        "@id": "urn:27c64ef9-8a41-482c-80e9-1fef7e220907",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:0ebd0fc1-2b07-46fe-a567-1b4fd6b693e8",
+        "GeneratedBy": "urn:bc1a2433-b20b-499f-8b99-a202af1012f2",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:d29f9314-7a2c-4522-b097-5402aba8a5b4",
+        "@id": "urn:3617818b-fc3c-4106-a1dc-5fd3c152eb59",
         "Label": "wsegment1",
-        "GeneratedBy": "urn:d1b9bc98-a253-4e9f-b88e-3c5199b9250d"
+        "GeneratedBy": "urn:5b0ca4be-398b-4a17-bcfd-4979613d6409"
       },
       {
-        "@id": "urn:f0ac745d-d240-49a4-994a-fd65bc220312",
+        "@id": "urn:2cf1aad2-75e7-427d-8859-f4a294b39611",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:45a94e0b-8133-4a06-adc8-255c202a5ec4",
+        "@id": "urn:c0b2dc25-6399-41b4-8c90-2115b9a9c877",
         "Label": "swsegment1",
-        "GeneratedBy": "urn:8071b9d4-edae-48cb-b60c-e1e182cdb126"
+        "GeneratedBy": "urn:1e21013c-20db-4252-9699-71e73b1cfd0e"
       },
       {
-        "@id": "urn:9d1c9415-3cd9-4368-bd8f-7728c4442b1e",
+        "@id": "urn:110ea3e4-213d-4c0f-b3d4-095ffe94e454",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:49eb3ff6-0436-43d9-9cfc-339740c5b001"
+        "GeneratedBy": "urn:c5da5238-d255-4788-8c65-a97fbad74c2e"
       },
       {
-        "@id": "urn:aa6e479e-739d-4039-8bea-d0c16c229162",
+        "@id": "urn:afb793a2-e11b-40df-bbab-7c55f13dce6f",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:5bc060d9-573c-49a3-8f8c-52ede444f022"
+        "GeneratedBy": "urn:298d54e4-1c6b-48c3-94f7-7d82fa1b91b7"
       },
       {
-        "@id": "urn:9476c583-64c7-4981-835b-573862b1757d",
+        "@id": "urn:edb51084-4e7e-41bf-a92f-7012c0d532dd",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:de17c456-a14f-44bc-9ce1-63dc7817d3c6"
+        "GeneratedBy": "urn:9cc3040c-923c-4223-bcdc-65e44e3724df"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_thr_clustunck10_batch.jsonld b/examples/from_parsers/spm/spm_thr_clustunck10_batch.jsonld
index 8e8f8b47a..c33c1faeb 100644
--- a/examples/from_parsers/spm/spm_thr_clustunck10_batch.jsonld
+++ b/examples/from_parsers/spm/spm_thr_clustunck10_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "@id": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:ee0a09e8-1dbc-43eb-99d6-fbae9704d1d7",
+        "@id": "urn:24494591-d5d7-4500-ad04-ae114c3334f9",
         "Label": "Move file",
         "Used": [
-          "urn:6d8aa8f6-be8d-4b10-ba9e-5b431404b51c"
+          "urn:9a733674-9bbb-4197-a3b3-6b052060bb4e"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:c71d2b44-1418-4682-a878-d1c3043c2ce7",
+        "@id": "urn:2601600d-77ad-47b1-943f-527dce2f3c41",
         "Label": "Move file",
         "Used": [
-          "urn:f6f8e17b-b0cb-4f0d-8a15-55d9885a63ee"
+          "urn:5818684f-eb4f-4926-ab68-239aef10f315"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:95bc5592-d6e4-4115-bd3d-370d21a66919",
+        "@id": "urn:09b0869a-34b6-4e96-8b33-d3180f5c63ee",
         "Label": "Gunzip",
         "Used": [
-          "urn:7284b9e7-6c6e-4be4-a460-4c982404ecf9"
+          "urn:95b07d19-1268-4da8-aef5-714ebce7e815"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:faa891cc-c004-44c1-9963-a6b67102e40f",
+        "@id": "urn:33ff81af-1444-46c3-a060-f926d0ced8ae",
         "Label": "Gunzip",
         "Used": [
-          "urn:ada8287c-44c7-4a1b-a80c-a52372d1fcfe"
+          "urn:d4539ad2-b6b6-447b-b595-4c432dfba73a"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:48853dc0-415a-4073-abdc-bc78808e64ef",
+        "@id": "urn:90fb626f-4820-45e0-9abc-2fa1b442e8e4",
         "Label": "Realign",
         "Used": [
-          "urn:6968d41e-97e9-4ec9-9933-6c069229bde1"
+          "urn:39fdeb1b-1b9e-48d6-967e-ba216bc07d04"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:6d405d1a-7fbd-4849-a1ee-23f4303f3b1f",
+        "@id": "urn:68c80596-8a3a-41ec-abd1-1b5cb9f3908f",
         "Label": "Coregister",
         "Used": [
-          "urn:6390ee09-b457-4182-86f4-d8c7e6a38a0c",
-          "urn:4624084d-96d7-4b18-b844-db1fe356c12d"
+          "urn:1abaf4b3-3b8b-47a5-9bef-ea9e15727931",
+          "urn:48daa469-7980-4aef-8da7-ad179b504481"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:791e3f41-1d41-4379-8c6f-783af998fdfc",
+        "@id": "urn:840c5d90-84c3-412a-ae8d-5b5b8af3c28a",
         "Label": "Segment",
         "Used": [
-          "urn:4624084d-96d7-4b18-b844-db1fe356c12d"
+          "urn:1abaf4b3-3b8b-47a5-9bef-ea9e15727931"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:8771ca6d-79d5-46c0-a9f8-018a97f037d0",
+        "@id": "urn:8ddb5caa-1d83-4fa7-81bc-bc33c94e9de0",
         "Label": "Normalize",
         "Used": [
-          "urn:f21fb26e-c121-44f4-9518-59a3ba3cddfb",
-          "urn:6390ee09-b457-4182-86f4-d8c7e6a38a0c"
+          "urn:162a1740-734c-4e43-8413-04fa22e9ac88",
+          "urn:48daa469-7980-4aef-8da7-ad179b504481"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:c2edea08-f4e8-4dc9-b627-453b1f7c9127",
+        "@id": "urn:fcb04b90-a3a3-4c4d-b8db-b5c2e2f07f5d",
         "Label": "Normalize",
         "Used": [
-          "urn:f21fb26e-c121-44f4-9518-59a3ba3cddfb",
-          "urn:f21fb26e-c121-44f4-9518-59a3ba3cddfb"
+          "urn:162a1740-734c-4e43-8413-04fa22e9ac88"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:96593cdc-9f16-4b8e-b841-6a945d72cb38",
+        "@id": "urn:f48bc076-8f2e-47d0-b651-3a12200ba777",
         "Label": "Smooth",
         "Used": [
-          "urn:e4050d28-ec12-473c-a20d-3ea94d62920f"
+          "urn:63ad4bc7-4d97-46bc-b872-48b4e3cc971d"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:b9764b4c-90f2-4ca6-8158-ea28ee9fff68",
+        "@id": "urn:f59764b8-a925-44d9-8cc7-4e70fb2b3d1b",
         "Label": "Stat Design",
         "Used": [
-          "urn:fed9070f-ad40-4167-bcfb-bcc75040af44",
-          "urn:285c6eeb-db3e-476c-9d41-c2954ae77a1b"
+          "urn:30934d7f-fa54-4dc4-92c2-0692dcc79bf8",
+          "urn:bfc94b09-104e-4f77-bc9c-6a254b2b3237"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_cluster_k10'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_cluster_k10'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:e096c919-99a8-4bda-b143-6b221924d744",
+        "@id": "urn:f0385465-4dbd-48ce-9470-433ea4f5b4ef",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:8bdae2ee-5aba-4cba-a854-3155f055fb73"
+          "urn:a4cb1cd3-5946-4299-bda9-a293aea387b1"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:e4639d44-807d-4222-a629-3e69de532488",
+        "@id": "urn:741a7638-5305-4e8c-b932-63bbac46e5b4",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:4aeef158-d26c-4a7d-9ecd-51c007325113"
+          "urn:c928a696-a036-4263-b227-10fed64c9e8e"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:a9093ed2-7f77-49ac-aef1-ff6333feccdc",
+        "@id": "urn:abc626d1-00a7-4658-8345-e262989b746d",
         "Label": "Threshold",
         "Used": [
-          "urn:158b1d1a-cfcc-4545-903e-ecc0c0c1554c"
+          "urn:e5b81464-47db-4542-8dc2-69a1ddd77020"
         ],
-        "AssociatedWith": "urn:bc402a7d-a8df-41e0-bf0f-30a4f6f4eb5d",
+        "AssociatedWith": "urn:6187dbad-7f5e-4069-96d4-a5217ac853d3",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.001;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 10;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:6d8aa8f6-be8d-4b10-ba9e-5b431404b51c",
+        "@id": "urn:9a733674-9bbb-4197-a3b3-6b052060bb4e",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:f6f8e17b-b0cb-4f0d-8a15-55d9885a63ee",
+        "@id": "urn:5818684f-eb4f-4926-ab68-239aef10f315",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:7284b9e7-6c6e-4be4-a460-4c982404ecf9",
+        "@id": "urn:95b07d19-1268-4da8-aef5-714ebce7e815",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:ee0a09e8-1dbc-43eb-99d6-fbae9704d1d7"
+        "GeneratedBy": "urn:24494591-d5d7-4500-ad04-ae114c3334f9"
       },
       {
-        "@id": "urn:ada8287c-44c7-4a1b-a80c-a52372d1fcfe",
+        "@id": "urn:d4539ad2-b6b6-447b-b595-4c432dfba73a",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:c71d2b44-1418-4682-a878-d1c3043c2ce7"
+        "GeneratedBy": "urn:2601600d-77ad-47b1-943f-527dce2f3c41"
       },
       {
-        "@id": "urn:6968d41e-97e9-4ec9-9933-6c069229bde1",
+        "@id": "urn:39fdeb1b-1b9e-48d6-967e-ba216bc07d04",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:95bc5592-d6e4-4115-bd3d-370d21a66919"
+        "GeneratedBy": "urn:09b0869a-34b6-4e96-8b33-d3180f5c63ee"
       },
       {
-        "@id": "urn:6390ee09-b457-4182-86f4-d8c7e6a38a0c",
+        "@id": "urn:48daa469-7980-4aef-8da7-ad179b504481",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:48853dc0-415a-4073-abdc-bc78808e64ef"
+        "GeneratedBy": "urn:90fb626f-4820-45e0-9abc-2fa1b442e8e4"
       },
       {
-        "@id": "urn:4624084d-96d7-4b18-b844-db1fe356c12d",
+        "@id": "urn:1abaf4b3-3b8b-47a5-9bef-ea9e15727931",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:faa891cc-c004-44c1-9963-a6b67102e40f"
+        "GeneratedBy": "urn:33ff81af-1444-46c3-a060-f926d0ced8ae"
       },
       {
-        "@id": "urn:f21fb26e-c121-44f4-9518-59a3ba3cddfb",
+        "@id": "urn:162a1740-734c-4e43-8413-04fa22e9ac88",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:791e3f41-1d41-4379-8c6f-783af998fdfc",
+        "GeneratedBy": "urn:840c5d90-84c3-412a-ae8d-5b5b8af3c28a",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:c2278df0-a2c8-441b-a3ca-3ab7b9d32011",
+        "@id": "urn:c72a767c-6c04-48a4-840f-8f8fce9c046f",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:791e3f41-1d41-4379-8c6f-783af998fdfc",
+        "GeneratedBy": "urn:840c5d90-84c3-412a-ae8d-5b5b8af3c28a",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:e4050d28-ec12-473c-a20d-3ea94d62920f",
+        "@id": "urn:63ad4bc7-4d97-46bc-b872-48b4e3cc971d",
         "Label": "wsegment1",
-        "GeneratedBy": "urn:8771ca6d-79d5-46c0-a9f8-018a97f037d0"
+        "GeneratedBy": "urn:8ddb5caa-1d83-4fa7-81bc-bc33c94e9de0"
       },
       {
-        "@id": "urn:285c6eeb-db3e-476c-9d41-c2954ae77a1b",
+        "@id": "urn:bfc94b09-104e-4f77-bc9c-6a254b2b3237",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:fed9070f-ad40-4167-bcfb-bcc75040af44",
+        "@id": "urn:30934d7f-fa54-4dc4-92c2-0692dcc79bf8",
         "Label": "swsegment1",
-        "GeneratedBy": "urn:96593cdc-9f16-4b8e-b841-6a945d72cb38"
+        "GeneratedBy": "urn:f48bc076-8f2e-47d0-b651-3a12200ba777"
       },
       {
-        "@id": "urn:8bdae2ee-5aba-4cba-a854-3155f055fb73",
+        "@id": "urn:a4cb1cd3-5946-4299-bda9-a293aea387b1",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:b9764b4c-90f2-4ca6-8158-ea28ee9fff68"
+        "GeneratedBy": "urn:f59764b8-a925-44d9-8cc7-4e70fb2b3d1b"
       },
       {
-        "@id": "urn:4aeef158-d26c-4a7d-9ecd-51c007325113",
+        "@id": "urn:c928a696-a036-4263-b227-10fed64c9e8e",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:e096c919-99a8-4bda-b143-6b221924d744"
+        "GeneratedBy": "urn:f0385465-4dbd-48ce-9470-433ea4f5b4ef"
       },
       {
-        "@id": "urn:158b1d1a-cfcc-4545-903e-ecc0c0c1554c",
+        "@id": "urn:e5b81464-47db-4542-8dc2-69a1ddd77020",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:e4639d44-807d-4222-a629-3e69de532488"
+        "GeneratedBy": "urn:741a7638-5305-4e8c-b932-63bbac46e5b4"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_thr_voxelfdrp05_batch.jsonld b/examples/from_parsers/spm/spm_thr_voxelfdrp05_batch.jsonld
index fbd7a7769..349c14b98 100644
--- a/examples/from_parsers/spm/spm_thr_voxelfdrp05_batch.jsonld
+++ b/examples/from_parsers/spm/spm_thr_voxelfdrp05_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "@id": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:29d7a2b4-0c12-47cd-84d1-90512bc1f86e",
+        "@id": "urn:1e71f56b-d494-46ce-ba1b-e6e6a05abd1f",
         "Label": "Move file",
         "Used": [
-          "urn:f52c1e63-64da-4756-9061-4b73f40950b5"
+          "urn:f3a1b8eb-becf-4260-8526-cd7f14a93549"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:764c0eea-2131-4923-bc27-c745a22d1bd9",
+        "@id": "urn:94f1e1b4-8e76-41fb-9f3b-d60517272174",
         "Label": "Move file",
         "Used": [
-          "urn:43a42656-4331-4e91-a348-009b34173808"
+          "urn:f331cbfd-e6cb-4474-b9d2-f5093b12b4b7"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:d0817bad-4522-48f7-9e50-31e3489d82ae",
+        "@id": "urn:8e28756c-7915-4747-a230-d16d1b31fd66",
         "Label": "Gunzip",
         "Used": [
-          "urn:44317bf6-99a8-4fa3-a1d4-6c5b970ddeda"
+          "urn:82ed7a10-62ca-4cdd-9124-cd33788aa5c7"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:539f3203-1cf0-4089-8fa6-4ad57307a697",
+        "@id": "urn:e350024b-aa85-47b7-a4a4-239310870a5f",
         "Label": "Gunzip",
         "Used": [
-          "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8"
+          "urn:1f3ccb95-5c68-4eda-a0e2-23aef8d5c592"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:b3739448-eeb9-483a-becc-989cce766a2d",
+        "@id": "urn:d9166487-56b9-4a79-815c-e52de617b7d8",
         "Label": "Realign",
         "Used": [
-          "urn:d965b6df-759f-418b-a6e5-0eac46db33da"
+          "urn:7be1cf76-746a-42a3-aa4f-a4ae45ef4735"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:4342af1c-2b81-4c02-b669-ccdebeaafff8",
+        "@id": "urn:194a0e78-c788-4530-b7c0-0155f909d523",
         "Label": "Coregister",
         "Used": [
-          "urn:8357220e-6ce0-4b76-a86e-9e52f8105a66",
-          "urn:efe55a24-f1b1-4b61-8343-0087b38ed521"
+          "urn:8923f9a6-0a25-4ceb-9abf-260fa1efec80",
+          "urn:c04a985a-03ce-4123-916b-52f1738c5371"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:32473147-0c61-422a-b307-54b33fdc4cc7",
+        "@id": "urn:33ed9bcb-6059-4783-88f7-1aa00fe0a5c0",
         "Label": "Segment",
         "Used": [
-          "urn:efe55a24-f1b1-4b61-8343-0087b38ed521"
+          "urn:c04a985a-03ce-4123-916b-52f1738c5371"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:32cae31b-c5e5-42d4-a310-416b886eed55",
+        "@id": "urn:47ff32c1-ea81-41eb-aa5c-9e0cecfb40ce",
         "Label": "Normalize",
         "Used": [
-          "urn:6e82ab5e-2cae-4566-b691-f4eb52ac5a93",
-          "urn:8357220e-6ce0-4b76-a86e-9e52f8105a66"
+          "urn:5a7858f6-1aa1-442f-8a48-e5b43e777f83",
+          "urn:8923f9a6-0a25-4ceb-9abf-260fa1efec80"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:fb0a4cf2-0b8a-445d-b252-7e765e1ba496",
+        "@id": "urn:c09831f3-2daa-4d46-8cc2-8d3a6d13e061",
         "Label": "Normalize",
         "Used": [
-          "urn:6e82ab5e-2cae-4566-b691-f4eb52ac5a93",
-          "urn:6e82ab5e-2cae-4566-b691-f4eb52ac5a93"
+          "urn:5a7858f6-1aa1-442f-8a48-e5b43e777f83"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:16dddb2c-906b-4a85-b556-0bb3e7ddaff2",
+        "@id": "urn:a0828193-6c5d-4073-910f-4d6ef6b19f1a",
         "Label": "Smooth",
         "Used": [
-          "urn:f52d0638-4f8b-46ef-911f-4a11a3bd6392"
+          "urn:307ab064-d2fc-4591-bb45-46dd57cf2d2d"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7",
+        "@id": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239",
         "Label": "Stat Design",
         "Used": [
-          "urn:ee05cd16-9e60-45d8-9454-736cb892f197",
-          "urn:ca9a4718-ff12-4c49-bc9b-c8e5d0c67304"
+          "urn:6f8229a7-f228-4a5d-a39a-8d1fb380f779",
+          "urn:8eebfcaf-f179-4ce4-83df-6d852735775d"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_FDR_p005'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_FDR_p005'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:406533ba-f5f6-475d-b834-784305e689ce",
+        "@id": "urn:6bf8a2e7-b254-4869-8156-8a248aa6d888",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:da0a1900-b8f3-4fff-85b1-b9f700cefdff"
+          "urn:ce469927-3e7f-4362-b6fc-0cca4d0aa043"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:794883bf-d745-44bf-880c-8341377bd9ec",
+        "@id": "urn:b24277ee-2b84-4d0b-b76e-53234bf3a1ca",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:2ec46422-3d77-4635-82fc-107101bfe479"
+          "urn:4125e09e-1e8f-485f-a75a-200cf5ed26c0"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:f8728d5a-b3f1-4f75-b4cd-73ed82ad1764",
+        "@id": "urn:0f4d54c0-a22d-4e21-8302-30a73e21a790",
         "Label": "Threshold",
         "Used": [
-          "urn:2cf39d2b-1f46-4df9-9f1f-0ee01340ad6d"
+          "urn:64845e67-36b3-45b7-a4bb-2e3a3460a920"
         ],
-        "AssociatedWith": "urn:667064d9-257b-4539-a873-b57e8392bf62",
+        "AssociatedWith": "urn:fc6df78f-dcf6-493f-9d17-9b7821a4991b",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'FDR';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.05;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:f52c1e63-64da-4756-9061-4b73f40950b5",
+        "@id": "urn:f3a1b8eb-becf-4260-8526-cd7f14a93549",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:43a42656-4331-4e91-a348-009b34173808",
+        "@id": "urn:f331cbfd-e6cb-4474-b9d2-f5093b12b4b7",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:44317bf6-99a8-4fa3-a1d4-6c5b970ddeda",
+        "@id": "urn:82ed7a10-62ca-4cdd-9124-cd33788aa5c7",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:29d7a2b4-0c12-47cd-84d1-90512bc1f86e"
+        "GeneratedBy": "urn:1e71f56b-d494-46ce-ba1b-e6e6a05abd1f"
       },
       {
-        "@id": "urn:52d1ab38-a102-45af-8923-fd9dd2a3cbb8",
+        "@id": "urn:1f3ccb95-5c68-4eda-a0e2-23aef8d5c592",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:764c0eea-2131-4923-bc27-c745a22d1bd9"
+        "GeneratedBy": "urn:94f1e1b4-8e76-41fb-9f3b-d60517272174"
       },
       {
-        "@id": "urn:d965b6df-759f-418b-a6e5-0eac46db33da",
+        "@id": "urn:7be1cf76-746a-42a3-aa4f-a4ae45ef4735",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:d0817bad-4522-48f7-9e50-31e3489d82ae"
+        "GeneratedBy": "urn:8e28756c-7915-4747-a230-d16d1b31fd66"
       },
       {
-        "@id": "urn:8357220e-6ce0-4b76-a86e-9e52f8105a66",
+        "@id": "urn:8923f9a6-0a25-4ceb-9abf-260fa1efec80",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:b3739448-eeb9-483a-becc-989cce766a2d"
+        "GeneratedBy": "urn:d9166487-56b9-4a79-815c-e52de617b7d8"
       },
       {
-        "@id": "urn:efe55a24-f1b1-4b61-8343-0087b38ed521",
+        "@id": "urn:c04a985a-03ce-4123-916b-52f1738c5371",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:539f3203-1cf0-4089-8fa6-4ad57307a697"
+        "GeneratedBy": "urn:e350024b-aa85-47b7-a4a4-239310870a5f"
       },
       {
-        "@id": "urn:6e82ab5e-2cae-4566-b691-f4eb52ac5a93",
+        "@id": "urn:5a7858f6-1aa1-442f-8a48-e5b43e777f83",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:32473147-0c61-422a-b307-54b33fdc4cc7",
+        "GeneratedBy": "urn:33ed9bcb-6059-4783-88f7-1aa00fe0a5c0",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:dda849d1-c75a-4abc-88ae-d29ae70310b1",
+        "@id": "urn:ef22e358-c84a-4ca8-b3e2-005482fd2886",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:32473147-0c61-422a-b307-54b33fdc4cc7",
+        "GeneratedBy": "urn:33ed9bcb-6059-4783-88f7-1aa00fe0a5c0",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:f52d0638-4f8b-46ef-911f-4a11a3bd6392",
+        "@id": "urn:307ab064-d2fc-4591-bb45-46dd57cf2d2d",
         "Label": "wsegment1",
-        "GeneratedBy": "urn:32cae31b-c5e5-42d4-a310-416b886eed55"
+        "GeneratedBy": "urn:47ff32c1-ea81-41eb-aa5c-9e0cecfb40ce"
       },
       {
-        "@id": "urn:ca9a4718-ff12-4c49-bc9b-c8e5d0c67304",
+        "@id": "urn:8eebfcaf-f179-4ce4-83df-6d852735775d",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:ee05cd16-9e60-45d8-9454-736cb892f197",
+        "@id": "urn:6f8229a7-f228-4a5d-a39a-8d1fb380f779",
         "Label": "swsegment1",
-        "GeneratedBy": "urn:16dddb2c-906b-4a85-b556-0bb3e7ddaff2"
+        "GeneratedBy": "urn:a0828193-6c5d-4073-910f-4d6ef6b19f1a"
       },
       {
-        "@id": "urn:da0a1900-b8f3-4fff-85b1-b9f700cefdff",
+        "@id": "urn:ce469927-3e7f-4362-b6fc-0cca4d0aa043",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:fa8d9523-1bbe-4d63-99df-ddfc0e3f8fd7"
+        "GeneratedBy": "urn:e1c44cbe-f3d0-4f0e-a12c-b3228ede5239"
       },
       {
-        "@id": "urn:2ec46422-3d77-4635-82fc-107101bfe479",
+        "@id": "urn:4125e09e-1e8f-485f-a75a-200cf5ed26c0",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:406533ba-f5f6-475d-b834-784305e689ce"
+        "GeneratedBy": "urn:6bf8a2e7-b254-4869-8156-8a248aa6d888"
       },
       {
-        "@id": "urn:2cf39d2b-1f46-4df9-9f1f-0ee01340ad6d",
+        "@id": "urn:64845e67-36b3-45b7-a4bb-2e3a3460a920",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:794883bf-d745-44bf-880c-8341377bd9ec"
+        "GeneratedBy": "urn:b24277ee-2b84-4d0b-b76e-53234bf3a1ca"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_thr_voxelfwep05_batch.jsonld b/examples/from_parsers/spm/spm_thr_voxelfwep05_batch.jsonld
index 5dcf160fe..fdbc6b6d5 100644
--- a/examples/from_parsers/spm/spm_thr_voxelfwep05_batch.jsonld
+++ b/examples/from_parsers/spm/spm_thr_voxelfwep05_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "@id": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:92dd3a7a-0a15-443b-b85f-3201f38e7d41",
+        "@id": "urn:d1e1cda7-db65-4013-a6e5-eff822140f17",
         "Label": "Move file",
         "Used": [
-          "urn:dced5c1d-04b9-4ce8-9f1f-929ef0c1d8c7"
+          "urn:4e0d8bea-e775-47bd-b9b7-3e7d46641b11"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:7fe5640e-c1ac-41e2-a390-5cfb10ed270c",
+        "@id": "urn:0e3d9bab-2776-4009-8c33-f64c88a586c0",
         "Label": "Move file",
         "Used": [
-          "urn:362a9b21-aaf4-43be-8ae2-e9676da61333"
+          "urn:4e86443f-aeb9-467a-87cd-921d8561e79d"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:7fa401d3-9b1e-402c-95a0-d5bb808a25ad",
+        "@id": "urn:4bbba145-a298-46fc-9d71-59ec7c739744",
         "Label": "Gunzip",
         "Used": [
-          "urn:71033977-c543-4f01-b2cf-9b47a1244aae"
+          "urn:bd40b1fe-f58d-4f57-abba-63275e76d0c1"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:19c392b8-27a2-4289-8244-b4873e9ca58f",
+        "@id": "urn:ffbf1f1d-cc38-47b8-a1a2-c0242ca8e8f8",
         "Label": "Gunzip",
         "Used": [
-          "urn:717ae316-6692-41fa-a042-a56ac63ecf4c"
+          "urn:c512daa6-81d5-4f4b-b599-ad2406137f3c"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:c5644168-63b9-4e5f-b32b-354c7481a6b3",
+        "@id": "urn:e0406187-21ba-4e5f-bf3f-52b211052757",
         "Label": "Realign",
         "Used": [
-          "urn:ea004d6b-2e31-45db-b3b4-7b0e08b96791"
+          "urn:dd2a855c-e782-42f5-ba65-a3a396a789de"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:7b8754b1-443a-4263-98f2-4ab4c5eac8fe",
+        "@id": "urn:9749c11a-671c-4c79-9951-10d84f2c77a6",
         "Label": "Coregister",
         "Used": [
-          "urn:5ea48616-c75d-40df-8da5-ecbca08599d0",
-          "urn:444a1daf-b77e-42d9-a1b3-56b1ad9ec433"
+          "urn:3f1fbed3-59f6-40e0-ad6f-8bda59adde98",
+          "urn:cff0d752-9ae5-4404-92c9-6fff79dcd286"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:c9a17754-68bd-4d33-9e11-d660c14d86a5",
+        "@id": "urn:a28a1432-8e3d-4d39-9cf9-e6acda7ca2fc",
         "Label": "Segment",
         "Used": [
-          "urn:444a1daf-b77e-42d9-a1b3-56b1ad9ec433"
+          "urn:3f1fbed3-59f6-40e0-ad6f-8bda59adde98"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:5125d2d9-6492-4c8b-adf2-c5705cc01a67",
+        "@id": "urn:deec3fb9-4e28-4d7c-8a47-599403e4edcd",
         "Label": "Normalize",
         "Used": [
-          "urn:9597a3cc-fad1-4121-b2ff-551c158e1486",
-          "urn:5ea48616-c75d-40df-8da5-ecbca08599d0"
+          "urn:859bef03-d16d-49d0-95d7-526e5a3b3e9d",
+          "urn:cff0d752-9ae5-4404-92c9-6fff79dcd286"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:54fe14f2-f486-4eb3-8300-f2e9a0b704e8",
+        "@id": "urn:4cef8fb6-2bfe-4c0e-85b8-4020e5ea01e3",
         "Label": "Normalize",
         "Used": [
-          "urn:9597a3cc-fad1-4121-b2ff-551c158e1486",
-          "urn:9597a3cc-fad1-4121-b2ff-551c158e1486"
+          "urn:859bef03-d16d-49d0-95d7-526e5a3b3e9d"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:fa4f4013-2d53-44e1-bf16-4dcc0a0d3daf",
+        "@id": "urn:331280a9-cad6-443e-8ec0-0bd032dec1f7",
         "Label": "Smooth",
         "Used": [
-          "urn:40123b3b-91ec-43ee-988a-93227bbb8fa9"
+          "urn:bd25383b-d975-4195-831d-bb521d441d8b"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:0eebfdde-bdc5-40d0-bb8d-4c6bcb1afb9a",
+        "@id": "urn:48031bc4-634d-494c-aeb4-970f39ebb304",
         "Label": "Stat Design",
         "Used": [
-          "urn:c0cf9bfd-dcce-45e6-a6f6-27dbd33dd9a3",
-          "urn:52207409-b5c7-42a2-a9f3-13fcebc29fa2"
+          "urn:62cef0cc-1cb3-4d9b-b110-a01298294d4b",
+          "urn:fd23797b-703e-44e6-9ce0-93a6c6659007"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_FWE_p005'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_FWE_p005'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:a06e91f3-8542-4272-a179-a66a7156b03a",
+        "@id": "urn:cf72bf6d-c398-4e69-9a8d-dbd8c530a31e",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:47e324b7-183c-44e8-9f43-dc1008b8693a"
+          "urn:8b99d805-d291-4e91-b46b-a85013a83cfb"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:2e5f2dfb-470a-43c5-95a0-5dbecb68ecd6",
+        "@id": "urn:0f2a2124-3de2-4554-af3f-3833d2222dae",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:13f7d6e4-de0c-411e-a8e5-36e80edb89ff"
+          "urn:8adb28e5-349d-4f53-8b18-4ed3975fae39"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:3b9828af-25bc-4463-b18a-2b842e1f91ff",
+        "@id": "urn:9686bceb-c078-427b-bb3f-d03889dc3a4d",
         "Label": "Threshold",
         "Used": [
-          "urn:9aa8be1f-d7bd-4ade-9c20-192c16d8b960"
+          "urn:14a31446-8871-49fa-b1e0-e00260791d2c"
         ],
-        "AssociatedWith": "urn:605488b5-e8b5-43a7-a87e-6bf4673c8dbd",
+        "AssociatedWith": "urn:75ff7e84-a2f8-4fcd-9c17-97f92cfcec40",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'FWE';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 0.05;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:dced5c1d-04b9-4ce8-9f1f-929ef0c1d8c7",
+        "@id": "urn:4e0d8bea-e775-47bd-b9b7-3e7d46641b11",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:362a9b21-aaf4-43be-8ae2-e9676da61333",
+        "@id": "urn:4e86443f-aeb9-467a-87cd-921d8561e79d",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:71033977-c543-4f01-b2cf-9b47a1244aae",
+        "@id": "urn:bd40b1fe-f58d-4f57-abba-63275e76d0c1",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:92dd3a7a-0a15-443b-b85f-3201f38e7d41"
+        "GeneratedBy": "urn:d1e1cda7-db65-4013-a6e5-eff822140f17"
       },
       {
-        "@id": "urn:717ae316-6692-41fa-a042-a56ac63ecf4c",
+        "@id": "urn:c512daa6-81d5-4f4b-b599-ad2406137f3c",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:7fe5640e-c1ac-41e2-a390-5cfb10ed270c"
+        "GeneratedBy": "urn:0e3d9bab-2776-4009-8c33-f64c88a586c0"
       },
       {
-        "@id": "urn:ea004d6b-2e31-45db-b3b4-7b0e08b96791",
+        "@id": "urn:dd2a855c-e782-42f5-ba65-a3a396a789de",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:7fa401d3-9b1e-402c-95a0-d5bb808a25ad"
+        "GeneratedBy": "urn:4bbba145-a298-46fc-9d71-59ec7c739744"
       },
       {
-        "@id": "urn:5ea48616-c75d-40df-8da5-ecbca08599d0",
+        "@id": "urn:cff0d752-9ae5-4404-92c9-6fff79dcd286",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:c5644168-63b9-4e5f-b32b-354c7481a6b3"
+        "GeneratedBy": "urn:e0406187-21ba-4e5f-bf3f-52b211052757"
       },
       {
-        "@id": "urn:444a1daf-b77e-42d9-a1b3-56b1ad9ec433",
+        "@id": "urn:3f1fbed3-59f6-40e0-ad6f-8bda59adde98",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:19c392b8-27a2-4289-8244-b4873e9ca58f"
+        "GeneratedBy": "urn:ffbf1f1d-cc38-47b8-a1a2-c0242ca8e8f8"
       },
       {
-        "@id": "urn:9597a3cc-fad1-4121-b2ff-551c158e1486",
+        "@id": "urn:859bef03-d16d-49d0-95d7-526e5a3b3e9d",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:c9a17754-68bd-4d33-9e11-d660c14d86a5",
+        "GeneratedBy": "urn:a28a1432-8e3d-4d39-9cf9-e6acda7ca2fc",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:18c43dee-e923-4c54-9293-0d45d34598fc",
+        "@id": "urn:1c42556b-6ea5-40c5-ba7f-d049ffbfac3c",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:c9a17754-68bd-4d33-9e11-d660c14d86a5",
+        "GeneratedBy": "urn:a28a1432-8e3d-4d39-9cf9-e6acda7ca2fc",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:40123b3b-91ec-43ee-988a-93227bbb8fa9",
+        "@id": "urn:bd25383b-d975-4195-831d-bb521d441d8b",
         "Label": "wsegment1",
-        "GeneratedBy": "urn:5125d2d9-6492-4c8b-adf2-c5705cc01a67"
+        "GeneratedBy": "urn:deec3fb9-4e28-4d7c-8a47-599403e4edcd"
       },
       {
-        "@id": "urn:52207409-b5c7-42a2-a9f3-13fcebc29fa2",
+        "@id": "urn:fd23797b-703e-44e6-9ce0-93a6c6659007",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:c0cf9bfd-dcce-45e6-a6f6-27dbd33dd9a3",
+        "@id": "urn:62cef0cc-1cb3-4d9b-b110-a01298294d4b",
         "Label": "swsegment1",
-        "GeneratedBy": "urn:fa4f4013-2d53-44e1-bf16-4dcc0a0d3daf"
+        "GeneratedBy": "urn:331280a9-cad6-443e-8ec0-0bd032dec1f7"
       },
       {
-        "@id": "urn:47e324b7-183c-44e8-9f43-dc1008b8693a",
+        "@id": "urn:8b99d805-d291-4e91-b46b-a85013a83cfb",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:0eebfdde-bdc5-40d0-bb8d-4c6bcb1afb9a"
+        "GeneratedBy": "urn:48031bc4-634d-494c-aeb4-970f39ebb304"
       },
       {
-        "@id": "urn:13f7d6e4-de0c-411e-a8e5-36e80edb89ff",
+        "@id": "urn:8adb28e5-349d-4f53-8b18-4ed3975fae39",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:a06e91f3-8542-4272-a179-a66a7156b03a"
+        "GeneratedBy": "urn:cf72bf6d-c398-4e69-9a8d-dbd8c530a31e"
       },
       {
-        "@id": "urn:9aa8be1f-d7bd-4ade-9c20-192c16d8b960",
+        "@id": "urn:14a31446-8871-49fa-b1e0-e00260791d2c",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:2e5f2dfb-470a-43c5-95a0-5dbecb68ecd6"
+        "GeneratedBy": "urn:0f2a2124-3de2-4554-af3f-3833d2222dae"
       }
     ]
   }
diff --git a/examples/from_parsers/spm/spm_thr_voxelunct4_batch.jsonld b/examples/from_parsers/spm/spm_thr_voxelunct4_batch.jsonld
index 01c484134..02e3a325b 100644
--- a/examples/from_parsers/spm/spm_thr_voxelunct4_batch.jsonld
+++ b/examples/from_parsers/spm/spm_thr_voxelunct4_batch.jsonld
@@ -4,7 +4,7 @@
   "Records": {
     "Software": [
       {
-        "@id": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "@id": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "RRID": "RRID:SCR_007037",
         "@type": "prov:SoftwareAgent",
         "Label": "SPM",
@@ -13,54 +13,54 @@
     ],
     "Activities": [
       {
-        "@id": "urn:7c11963b-3914-4ac8-a5fc-a935011ad6e9",
+        "@id": "urn:da3b9dcd-0842-4839-80f4-0af1be995a20",
         "Label": "Move file",
         "Used": [
-          "urn:a04913d6-f6ed-402b-b110-cf49ce78016a"
+          "urn:41002437-cbf0-4db7-9a60-637d98c15b27"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz'};\nmatlabbatch{1}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/FUNCTIONAL'}"
         }
       },
       {
-        "@id": "urn:b4169786-f8b4-4875-a20b-b4433c296029",
+        "@id": "urn:b463f3ce-4f90-4f0c-8df8-992655455333",
         "Label": "Move file",
         "Used": [
-          "urn:f7950dc3-735b-4be3-a659-65d79c66cc27"
+          "urn:9beabfc2-fadd-47a3-bbca-4307262fbcae"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.files = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz'};\nmatlabbatch{2}.cfg_basicio.file_dir.file_ops.file_move.action.copyto = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'};",
         "Parameters": {
           "action.copyto": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ANATOMICAL'}"
         }
       },
       {
-        "@id": "urn:c09e350e-751b-4ef5-9a0f-48397e2fbe36",
+        "@id": "urn:2e4207ad-de38-44b4-85b0-5c1ac384e6c8",
         "Label": "Gunzip",
         "Used": [
-          "urn:696ebbff-1fbb-4a38-8b97-78f2901d8167"
+          "urn:04b2b95f-4706-4a8e-be80-12e76066f1b1"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{3}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:c318e459-6636-41c0-baad-6553d27b820c",
+        "@id": "urn:fcef7c15-eb1a-43d0-a496-81c1c8943ae1",
         "Label": "Gunzip",
         "Used": [
-          "urn:d614eace-303b-4e36-aade-7a255d1426f6"
+          "urn:338b602f-d83f-4655-8404-32c1d8fb3a51"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{4}.cfg_basicio.file_dir.file_ops.cfg_gunzip_files.files(1) = cfg_dep('Move/Delete Files: Moved/Copied Files', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));"
       },
       {
-        "@id": "urn:35fd6ff1-968d-40ab-aaad-7cf131cab8cf",
+        "@id": "urn:1c715c78-02eb-4649-93ce-b416be729b3b",
         "Label": "Realign",
         "Used": [
-          "urn:38b5d57d-2ccc-4626-a8f7-de90eae750e4"
+          "urn:85f2163f-cfc5-4ede-9da5-a69c4e234514"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{5}.spm.spatial.realign.estwrite.data{1}(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{3}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.quality = 0.9;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.sep = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.fwhm = 5;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.rtm = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.interp = 2;\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.eoptions.weight = '';\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.which = [0 1];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.interp = 4;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.wrap = [0 0 0];\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.mask = 1;\nmatlabbatch{5}.spm.spatial.realign.estwrite.roptions.prefix = 'r';",
         "Parameters": {
           "eoptions.quality": "0.9",
@@ -78,13 +78,13 @@
         }
       },
       {
-        "@id": "urn:36ff0b3c-ddbb-4e94-a6a3-56e2bfd7bb9d",
+        "@id": "urn:12361698-19e6-44f0-b3c4-b740dfe8a626",
         "Label": "Coregister",
         "Used": [
-          "urn:8633c6ca-e187-4a73-8efa-926d8ca33d59",
-          "urn:1c32b8dc-a3cb-4ef0-9c8f-eb21e635e505"
+          "urn:3717a4e1-99f6-4b60-9f13-13f30a9f180d",
+          "urn:ba95b31e-c044-4e0b-ae51-ca7bdbacd87e"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{6}.spm.spatial.coreg.estimate.ref(1) = cfg_dep('Realign: Estimate & Reslice: Mean Image', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','rmean'));\nmatlabbatch{6}.spm.spatial.coreg.estimate.source(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{6}.spm.spatial.coreg.estimate.other = {''};\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.cost_fun = 'nmi';\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.sep = [4 2];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.tol = [0.02 0.02 0.02 0.001 0.001 0.001 0.01 0.01 0.01 0.001 0.001 0.001];\nmatlabbatch{6}.spm.spatial.coreg.estimate.eoptions.fwhm = [7 7];",
         "Parameters": {
           "other": "{''}",
@@ -95,12 +95,12 @@
         }
       },
       {
-        "@id": "urn:b3b5ba49-7388-4c3d-9bb8-bd7fc681ba7d",
+        "@id": "urn:b66b5e86-c268-4d21-9bda-3d10f0361c09",
         "Label": "Segment",
         "Used": [
-          "urn:1c32b8dc-a3cb-4ef0-9c8f-eb21e635e505"
+          "urn:ba95b31e-c044-4e0b-ae51-ca7bdbacd87e"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{7}.spm.spatial.preproc.channel.vols(1) = cfg_dep('GunZip Files: GunZipped Files', substruct('.','val', '{}',{4}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{':'}));\nmatlabbatch{7}.spm.spatial.preproc.channel.biasreg = 0.001;\nmatlabbatch{7}.spm.spatial.preproc.channel.biasfwhm = 60;\nmatlabbatch{7}.spm.spatial.preproc.channel.write = [0 1];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,1'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(1).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,2'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).ngaus = 1;\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(2).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,3'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(3).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,4'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).ngaus = 3;\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(4).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,5'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).ngaus = 4;\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).native = [1 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(5).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).tpm = {'/storage/essicd/data/NIDM-Ex/spm12_update/tpm/TPM.nii,6'};\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).ngaus = 2;\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).native = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.tissue(6).warped = [0 0];\nmatlabbatch{7}.spm.spatial.preproc.warp.mrf = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.cleanup = 1;\nmatlabbatch{7}.spm.spatial.preproc.warp.reg = [0 0.001 0.5 0.05 0.2];\nmatlabbatch{7}.spm.spatial.preproc.warp.affreg = 'mni';\nmatlabbatch{7}.spm.spatial.preproc.warp.fwhm = 0;\nmatlabbatch{7}.spm.spatial.preproc.warp.samp = 3;\nmatlabbatch{7}.spm.spatial.preproc.warp.write = [0 1];",
         "Parameters": {
           "channel.biasreg": "0.001",
@@ -140,13 +140,13 @@
         }
       },
       {
-        "@id": "urn:bfffb695-6bce-460d-9745-484236201700",
+        "@id": "urn:d6f63e96-ea88-4593-82e8-42fed8a33dfd",
         "Label": "Normalize",
         "Used": [
-          "urn:dc9e4fe0-6cef-4a23-9009-138e1ebb75a7",
-          "urn:8633c6ca-e187-4a73-8efa-926d8ca33d59"
+          "urn:3717a4e1-99f6-4b60-9f13-13f30a9f180d",
+          "urn:d66f2975-367e-471e-b934-9427c9784ed2"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{8}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{8}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Realign: Estimate & Reslice: Realigned Images (Sess 1)', substruct('.','val', '{}',{5}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','cfiles'));\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{8}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -156,13 +156,12 @@
         }
       },
       {
-        "@id": "urn:46cf6b03-fe1d-4b26-9925-389bf65d67d2",
+        "@id": "urn:d839cce9-09a1-4f7f-98a1-1111d118824c",
         "Label": "Normalize",
         "Used": [
-          "urn:dc9e4fe0-6cef-4a23-9009-138e1ebb75a7",
-          "urn:dc9e4fe0-6cef-4a23-9009-138e1ebb75a7"
+          "urn:d66f2975-367e-471e-b934-9427c9784ed2"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{9}.spm.spatial.normalise.write.subj.def(1) = cfg_dep('Segment: Forward Deformations', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','fordef', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.subj.resample(1) = cfg_dep('Segment: Bias Corrected (1)', substruct('.','val', '{}',{7}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','channel', '()',{1}, '.','biascorr', '()',{':'}));\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.bb = [-78 -112 -70 78 76 85];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.vox = [2 2 2];\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.interp = 4;\nmatlabbatch{9}.spm.spatial.normalise.write.woptions.prefix = 'w';",
         "Parameters": {
           "woptions.bb": "[-78, -112, -70, 78, 76, 85]",
@@ -172,12 +171,12 @@
         }
       },
       {
-        "@id": "urn:b66435cb-d795-4c33-b2e8-eeda2aab4832",
+        "@id": "urn:fa3c3aa3-0929-4ee2-a5b3-08a8f94c74ff",
         "Label": "Smooth",
         "Used": [
-          "urn:e2b31149-680d-4526-ab18-abcf4b480c88"
+          "urn:8b5fda69-66b3-4b80-b1b8-4e9f3526efb9"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{10}.spm.spatial.smooth.data(1) = cfg_dep('Normalise: Write: Normalised Images (Subj 1)', substruct('.','val', '{}',{8}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('()',{1}, '.','files'));\nmatlabbatch{10}.spm.spatial.smooth.fwhm = [6 6 6];\nmatlabbatch{10}.spm.spatial.smooth.dtype = 0;\nmatlabbatch{10}.spm.spatial.smooth.im = 0;\nmatlabbatch{10}.spm.spatial.smooth.prefix = 's';",
         "Parameters": {
           "fwhm": "[6, 6, 6]",
@@ -187,13 +186,13 @@
         }
       },
       {
-        "@id": "urn:bf189218-ad14-4b5f-ba55-945ce218f2f7",
+        "@id": "urn:18090ee8-2b42-44ac-a89c-2bbc77ce84d2",
         "Label": "Stat Design",
         "Used": [
-          "urn:0f3dc826-1ad2-4563-a19a-aceadec0c483",
-          "urn:47d90f56-3811-4499-b673-1ef07bb242a9"
+          "urn:b7e3dec0-55c8-47e7-841e-342eaf436e58",
+          "urn:7c5d805c-8cc9-4593-99f1-fc70e69f54c5"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{11}.spm.stats.fmri_spec.dir = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_voxelwise_t4'};\nmatlabbatch{11}.spm.stats.fmri_spec.timing.units = 'secs';\nmatlabbatch{11}.spm.stats.fmri_spec.timing.RT = 2;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t = 16;\nmatlabbatch{11}.spm.stats.fmri_spec.timing.fmri_t0 = 8;\nmatlabbatch{11}.spm.stats.fmri_spec.sess.scans(1) = cfg_dep('Smooth: Smoothed Images', substruct('.','val', '{}',{10}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','files'));\nmatlabbatch{11}.spm.stats.fmri_spec.sess.cond = struct('name', {}, 'onset', {}, 'duration', {}, 'tmod', {}, 'pmod', {}, 'orth', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi = {'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat'};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.regress = struct('name', {}, 'val', {});\nmatlabbatch{11}.spm.stats.fmri_spec.sess.multi_reg = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.sess.hpf = 128;\nmatlabbatch{11}.spm.stats.fmri_spec.fact = struct('name', {}, 'levels', {});\nmatlabbatch{11}.spm.stats.fmri_spec.bases.hrf.derivs = [0 0];\nmatlabbatch{11}.spm.stats.fmri_spec.volt = 1;\nmatlabbatch{11}.spm.stats.fmri_spec.global = 'None';\nmatlabbatch{11}.spm.stats.fmri_spec.mthresh = 0.8;\nmatlabbatch{11}.spm.stats.fmri_spec.mask = {''};\nmatlabbatch{11}.spm.stats.fmri_spec.cvi = 'AR(1)';",
         "Parameters": {
           "dir": "{'/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/TEST/nidmresults-examples/spm_voxelwise_t4'}",
@@ -215,12 +214,12 @@
         }
       },
       {
-        "@id": "urn:77c710e3-0894-4482-b181-3c7abd3a69ce",
+        "@id": "urn:813625a1-5cd9-48f5-b1fd-a31afcc8ab5c",
         "Label": "Estimate stat.",
         "Used": [
-          "urn:4d1dd6f4-b4e4-40c8-b95f-5ec76e8bd89b"
+          "urn:ec7ca64d-b4b1-4d1a-b564-051260583801"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{12}.spm.stats.fmri_est.spmmat(1) = cfg_dep('fMRI model specification: SPM.mat File', substruct('.','val', '{}',{11}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{12}.spm.stats.fmri_est.write_residuals = 0;\nmatlabbatch{12}.spm.stats.fmri_est.method.Classical = 1;",
         "Parameters": {
           "write_residuals": "0",
@@ -228,12 +227,12 @@
         }
       },
       {
-        "@id": "urn:b51eb436-940b-4b1b-9e47-f995a797d1cf",
+        "@id": "urn:e1eb98a2-f3af-47ec-812f-653e62f5e544",
         "Label": "Estimate contrast",
         "Used": [
-          "urn:cac6aef4-2dc3-4335-861e-a393fffa2d09"
+          "urn:9f9a7b54-8e6c-416f-9fde-1ef0401fb67a"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{13}.spm.stats.con.spmmat(1) = cfg_dep('Model estimation: SPM.mat File', substruct('.','val', '{}',{12}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.name = 'tone counting vs baseline';\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.weights = [1 0];\nmatlabbatch{13}.spm.stats.con.consess{1}.tcon.sessrep = 'none';\nmatlabbatch{13}.spm.stats.con.delete = 0;",
         "Parameters": {
           "consess{1}.tcon.name": "'tone counting vs baseline'",
@@ -243,12 +242,12 @@
         }
       },
       {
-        "@id": "urn:eab0d8bc-2fe3-4c10-b167-28e88bc93fe3",
+        "@id": "urn:cfc74850-74d6-422e-b165-d1170d07bbfc",
         "Label": "Threshold",
         "Used": [
-          "urn:0636ee2d-a3a6-4f30-87fa-789e47259146"
+          "urn:ceab5453-bdfe-47df-b649-f9d6fda5dbce"
         ],
-        "AssociatedWith": "urn:404a4d15-ee67-4dd8-ab02-993a22e6d405",
+        "AssociatedWith": "urn:29e0b780-0d6b-4417-9475-2753d3da59a3",
         "Command": "matlabbatch{14}.spm.stats.results.spmmat(1) = cfg_dep('Contrast Manager: SPM.mat File', substruct('.','val', '{}',{13}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','spmmat'));\nmatlabbatch{14}.spm.stats.results.conspec.titlestr = '';\nmatlabbatch{14}.spm.stats.results.conspec.contrasts = Inf;\nmatlabbatch{14}.spm.stats.results.conspec.threshdesc = 'none';\nmatlabbatch{14}.spm.stats.results.conspec.thresh = 4;\nmatlabbatch{14}.spm.stats.results.conspec.extent = 0;\nmatlabbatch{14}.spm.stats.results.conspec.conjunction = 1;\nmatlabbatch{14}.spm.stats.results.conspec.mask.none = 1;\nmatlabbatch{14}.spm.stats.results.units = 1;\nmatlabbatch{14}.spm.stats.results.print = 'pdf';\nmatlabbatch{14}.spm.stats.results.write.tspm.basename = 'thresh';",
         "Parameters": {
           "conspec.titlestr": "''",
@@ -266,7 +265,7 @@
     ],
     "Entities": [
       {
-        "@id": "urn:a04913d6-f6ed-402b-b110-cf49ce78016a",
+        "@id": "urn:41002437-cbf0-4db7-9a60-637d98c15b27",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/func/sub-01_task-tonecounting_bold.nii.gz",
         "digest": {
@@ -274,7 +273,7 @@
         }
       },
       {
-        "@id": "urn:f7950dc3-735b-4be3-a659-65d79c66cc27",
+        "@id": "urn:9beabfc2-fadd-47a3-bbca-4307262fbcae",
         "Label": "anat_sub-01_T1w.nii.gz",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/DATA/BIDS/ds011/sub-01/anat/sub-01_T1w.nii.gz",
         "digest": {
@@ -282,57 +281,57 @@
         }
       },
       {
-        "@id": "urn:696ebbff-1fbb-4a38-8b97-78f2901d8167",
+        "@id": "urn:04b2b95f-4706-4a8e-be80-12e76066f1b1",
         "Label": "func_sub-01_task-tonecounting_bold.nii.gz",
-        "GeneratedBy": "urn:7c11963b-3914-4ac8-a5fc-a935011ad6e9"
+        "GeneratedBy": "urn:da3b9dcd-0842-4839-80f4-0af1be995a20"
       },
       {
-        "@id": "urn:d614eace-303b-4e36-aade-7a255d1426f6",
+        "@id": "urn:338b602f-d83f-4655-8404-32c1d8fb3a51",
         "Label": "anat_sub-01_T1w.nii.gz",
-        "GeneratedBy": "urn:b4169786-f8b4-4875-a20b-b4433c296029"
+        "GeneratedBy": "urn:b463f3ce-4f90-4f0c-8df8-992655455333"
       },
       {
-        "@id": "urn:38b5d57d-2ccc-4626-a8f7-de90eae750e4",
+        "@id": "urn:85f2163f-cfc5-4ede-9da5-a69c4e234514",
         "Label": "func_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:c09e350e-751b-4ef5-9a0f-48397e2fbe36"
+        "GeneratedBy": "urn:2e4207ad-de38-44b4-85b0-5c1ac384e6c8"
       },
       {
-        "@id": "urn:8633c6ca-e187-4a73-8efa-926d8ca33d59",
+        "@id": "urn:3717a4e1-99f6-4b60-9f13-13f30a9f180d",
         "Label": "meanfunc_sub-01_task-tonecounting_bold.nii",
-        "GeneratedBy": "urn:35fd6ff1-968d-40ab-aaad-7cf131cab8cf"
+        "GeneratedBy": "urn:1c715c78-02eb-4649-93ce-b416be729b3b"
       },
       {
-        "@id": "urn:1c32b8dc-a3cb-4ef0-9c8f-eb21e635e505",
+        "@id": "urn:ba95b31e-c044-4e0b-ae51-ca7bdbacd87e",
         "Label": "anat_sub-01_T1w.nii",
-        "GeneratedBy": "urn:c318e459-6636-41c0-baad-6553d27b820c"
+        "GeneratedBy": "urn:fcef7c15-eb1a-43d0-a496-81c1c8943ae1"
       },
       {
-        "@id": "urn:dc9e4fe0-6cef-4a23-9009-138e1ebb75a7",
+        "@id": "urn:d66f2975-367e-471e-b934-9427c9784ed2",
         "Label": "segment1",
         "Atlocation": "c1xxx.nii.gz",
-        "GeneratedBy": "urn:b3b5ba49-7388-4c3d-9bb8-bd7fc681ba7d",
+        "GeneratedBy": "urn:b66b5e86-c268-4d21-9bda-3d10f0361c09",
         "AtLocation": "c1anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "61ca923955d0a5c9088df9e258f41644067ec964e1c9a83284ba03b0515079b0"
         }
       },
       {
-        "@id": "urn:40286f70-3d33-483c-bfc2-3432761e3c7f",
+        "@id": "urn:f5deb909-5717-4cc7-abdc-3b6ef5b1e1d0",
         "Label": "segment2",
         "Atlocation": "c2xxx.nii.gz",
-        "GeneratedBy": "urn:b3b5ba49-7388-4c3d-9bb8-bd7fc681ba7d",
+        "GeneratedBy": "urn:b66b5e86-c268-4d21-9bda-3d10f0361c09",
         "AtLocation": "c2anat_sub-01_T1w.nii",
         "digest": {
           "sha256": "10ad88ebeebebd0bd03ccbdd4df92d500d28d14715fa5375fd35589caddf49a6"
         }
       },
       {
-        "@id": "urn:e2b31149-680d-4526-ab18-abcf4b480c88",
-        "Label": "wsegment1",
-        "GeneratedBy": "urn:bfffb695-6bce-460d-9745-484236201700"
+        "@id": "urn:8b5fda69-66b3-4b80-b1b8-4e9f3526efb9",
+        "Label": "wmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:d6f63e96-ea88-4593-82e8-42fed8a33dfd"
       },
       {
-        "@id": "urn:47d90f56-3811-4499-b673-1ef07bb242a9",
+        "@id": "urn:7c5d805c-8cc9-4593-99f1-fc70e69f54c5",
         "Label": "ONSETS_sub-01-MultiCond.mat",
         "AtLocation": "/storage/essicd/data/NIDM-Ex/BIDS_Data/RESULTS/EXAMPLES/ds011/SPM/PREPROCESSING/ONSETS/sub-01-MultiCond.mat",
         "digest": {
@@ -340,24 +339,24 @@
         }
       },
       {
-        "@id": "urn:0f3dc826-1ad2-4563-a19a-aceadec0c483",
-        "Label": "swsegment1",
-        "GeneratedBy": "urn:b66435cb-d795-4c33-b2e8-eeda2aab4832"
+        "@id": "urn:b7e3dec0-55c8-47e7-841e-342eaf436e58",
+        "Label": "swmeanfunc_sub-01_task-tonecounting_bold.nii",
+        "GeneratedBy": "urn:fa3c3aa3-0929-4ee2-a5b3-08a8f94c74ff"
       },
       {
-        "@id": "urn:4d1dd6f4-b4e4-40c8-b95f-5ec76e8bd89b",
+        "@id": "urn:ec7ca64d-b4b1-4d1a-b564-051260583801",
         "Label": "SPM.mat",
-        "GeneratedBy": "urn:bf189218-ad14-4b5f-ba55-945ce218f2f7"
+        "GeneratedBy": "urn:18090ee8-2b42-44ac-a89c-2bbc77ce84d2"
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