From bf10e11a316f166387c10cee9dfd328af8ac8abd Mon Sep 17 00:00:00 2001 From: Nicolas Traut Date: Thu, 1 Jun 2017 16:09:42 +0200 Subject: [PATCH] adding a test for longitudinal pipeline decomposition --- circle.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/circle.yml b/circle.yml index cced8d9..c25993c 100644 --- a/circle.yml +++ b/circle.yml @@ -29,7 +29,7 @@ test: - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset bids/${CIRCLE_PROJECT_REPONAME,,} --version - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --license_key="~/test.key" --stages autorecon1 && cat ${HOME}/outputs1/sub-01/scripts/recon-all.done : timeout: 21600 - - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --steps cross-sectional --session_label test --license_key="~/test.key" --stages autorecon1 && cat ${HOME}/outputs2/sub-01/scripts/recon-all.done : + - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --steps cross-sectional --session_label test --license_key="~/test.key" --stages autorecon1 && cat ${HOME}/outputs2/sub-01_ses-test/scripts/recon-all.done : timeout: 21600 # group2 tests - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs group2 --license_key="~/test.key" && mkdir -p ${HOME}/outputs1/ && sudo mv ${HOME}/data/ds114_test1_freesurfer_precomp_v6.0.0/00_group* ${HOME}/outputs1/ && cat ${HOME}/outputs1/00_group2_stats_tables/lh.aparc.thickness.tsv :