diff --git a/circle.yml b/circle.yml index fe56893..289f951 100644 --- a/circle.yml +++ b/circle.yml @@ -10,8 +10,6 @@ dependencies: override: - if [[ -e ~/docker/image.tar ]]; then docker load -i ~/docker/image.tar; fi - if [[ ! -d ~/data/ds114_test1 ]]; then wget -c -O ${HOME}/ds114_test1.tar "https://files.osf.io/v1/resources/9q7dv/providers/osfstorage/57e54a326c613b01d7d3ed90" && mkdir -p ${HOME}/data && tar xf ${HOME}/ds114_test1.tar -C ${HOME}/data; fi - # longitudinal data. includes only one session for sub-01 - - if [[ ! -d ~/data/ds114_test2_missing ]]; then wget -c -O ${HOME}/ds114_test2.tar "https://files.osf.io/v1/resources/9q7dv/providers/osfstorage/57e549f9b83f6901d457d162" && mkdir -p ${HOME}/data/ds114_test2_missing && tar xf ${HOME}/ds114_test2.tar -C ${HOME}/data/ds114_test2_missing --exclude='ds114_test2/sub-01/ses-retest*' --strip-components=1; fi - git describe --tags > version - docker build -t bids/${CIRCLE_PROJECT_REPONAME} . : timeout: 21600 @@ -23,8 +21,6 @@ test: - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset bids/${CIRCLE_PROJECT_REPONAME,,} --version - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test1:/bids_dataset -v ${HOME}/outputs1:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --license_key="~/test.key" --stages autorecon1 && cat ${HOME}/outputs1/sub-01/scripts/recon-all.done : timeout: 21600 - - docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2_missing:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 01 --license_key="~/test.key" --stages autorecon1 && cat ${HOME}/outputs2/sub-01_ses-test/scripts/recon-all.done : - timeout: 21600 deployment: hub: