igv.js

igv.js is an embeddable interactive genome visualization component developed by the Integrative Genomics Viewer (IGV) team.

var options =
{
   genome: "hg19",
   locus: "chr8:128,747,267-128,754,546",
   theme: {
       bamTrackBgColor: "rgb(12,20,33)",
       featureTrackRectangleColor: "rgb(0,186,255)",
       featureTrackBgColor: "rgb(12,20,33)",
       featureTrackArrowColor: "rgb(255,255,255)",
       ideogramBgColor: "rgb(12,20,33)",
       rulerTrackLabelColor: "rgb(48,96,145)",
       rulerTrackTickColor: "rgb(48,96,145)",
       axisFontColor: "rgb(48,96,145)",
       axisBgColor: "rgb(12,20,33)"
   },
   tracks: [
       {
           type: 'alignment',
           format: 'bam',
           url: 'https://data.broadinstitute.org/igvdata/1KG/b37/data/HG02450/alignment/HG02450.mapped.ILLUMINA.bwa.ACB.low_coverage.20120522.bam',
           name: 'HG02450',
           color: "rgb(48,96,145)",
           coverageColor: "rgb(255,255,255)",
       }
   ]
};

License

igv.js is MIT licensed.