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System info

CentOS Linux release 7.9.2009 (Core)
Linux login2.cm.cluster 3.10.0-1160.53.1.el7.x86_64 #1 SMP Fri Jan 14 13:59:45 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

Useful links:

Load modules

For compiling and/or running SDPB, you have to load modules first:

module load boost/1.84.0-gcc-11.3.1-zauawkb gcc/13.2.0-gcc-13.2.0-w55nxkl openmpi/5.0.1-gcc-13.2.0-xpoh5uw libarchive/3.7.1-gcc-13.2.0-bzt555v openblas/0.3.23-gcc-13.2.0-3csynno

You may run module -t list to view loaded modules, and module purge to unload all modules.

You may also add this command to your ~/.bashrc file, so that modules will load automatically.

Use existing SDPB installation

Choose SDPB version

SDPB is installed in /central/home/vdommes/install/sdpb-<VERSION> folder, where <VERSION> denotes specific version.

You may list all available versions via

ls /central/home/vdommes/install | grep sdpb

Fo example, sdpb-master is built from the latest master branch ( run sdpb --version to see commit hash, e.g. SDPB 2.5.1-130-g88b1c9ae), and sdpb-3.0.0 is a stable 3.0.0 release.

Examples below are for sdpb-master. You may replace it with another version, e.g. sdpb-3.0.0. In that case, please refer to 3.0.0 documentation.

Run SDPB

/central/home/vdommes/install/sdpb-master/bin/sdpb --help

Batch script example

sbatch /central/home/vdommes/install/sdpb-master/share/sdpb_example.sh

This command submits sdpb_example.sh to the queueing system.

sdpb_example.sh loads modules and runs pmp2sdp+sdpb for a simple problem. See script code and comments for more details.

Script output is written to the log file in the current directory, e.g.: ./sdpb_example.sh.26306151.out. SDPB output files are written to the ./out/ folder in the current directory.

Build SDPB from sources

TODO: Note that /usr/include/gmp.h is present on login node, but may be absent on compute nodes. In that case one should compile on a login node.

Elemental

git clone https://gitlab.com/bootstrapcollaboration/elemental.git
cd elemental
mkdir build
cd build
cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/install -DCMAKE_CXX_COMPILER=mpicxx -DCMAKE_C_COMPILER=mpicc
make && make install
cd ../..

FLINT

git clone https://github.com/flintlib/flint.git
cd flint
./bootstrap.sh
./configure CC=mpicc CXX=mpicxx --disable-static --with-gmp=`pkg-config --variable=prefix gmp` --with-mpfr=`pkg-config --variable=prefix mpfr`--prefix=$HOME/install 
make
make check 
make install

RapidJSON

git clone https://github.com/Tencent/rapidjson.git
cp -r rapidjson/include $HOME/install

libarchive

wget http://www.libarchive.org/downloads/libarchive-3.7.1.tar.xz
tar -xf libarchive-3.7.1.tar.xz
cd libarchive-3.7.1
./configure --prefix=$HOME/install
make && make install
cd ../..

sdpb

CXX=mpicxx ./waf configure --libarchive-dir=`pkg-config --variable=prefix libarchive` --elemental-dir=$HOME/install --rapidjson-dir=$HOME/install --flint-dir=$HOME/install 
--prefix=$HOME/install/sdpb-master
./waf # -j 1
./test/run_all_tests.sh
./waf install
cd ..