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Aperio anonymization does not delete macro image #7

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markemus opened this issue Jun 23, 2020 · 5 comments
Open

Aperio anonymization does not delete macro image #7

markemus opened this issue Jun 23, 2020 · 5 comments

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@markemus
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This is a big problem- the process deletes the label image but not the macro image, which also has a copy of the label, at least on certain scanner settings.

@gregster7
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When I tested the program, it doesn't delete either for svs file.

@markemus
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markemus commented Jan 1, 2022

@gregster7 check my PR here #6 which adds removal of macro images for aperio. Should work for svs although I wrote it for aperio tiff.

@Tomatenbiss
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Tomatenbiss commented Nov 14, 2022

@markemus, @gregster7: Within the EMPAIA project, we have now developed our own solution for anonymizing WSIs (in various formats). This is currently available via Gitlab . The paper for this is currently in review, the preprint can already be viewed at arXiv.

@gregster7
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@Tomatenbiss This is great news! FYI arXiv link is broken - maybe typo?

@Tomatenbiss
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A point has snuck into the link. I fixed it, so it should work now. Just in case: https://arxiv.org/abs/2211.06103

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