Version v1.3.0

Changes:

• Improve Individuals CSV renderer
• Add Biosample Variants ingestion

Version v1.2.0

Changes:

• Add data ingest/remove scripts
• Add CSV renderer for the Individuals

Version 1.1.1

Minor changes

• Add missing PyJWT library to setup
• Update README (mainly renaming to katsu in docs)
• Add ingestion workflow in docs

Version 1.1.0

Changes

• Improve ingestion error handling
• Add CanDIG auth middleware
• Add django-cors
• Add filtering for phenopackets, patients, resources, experiments apps
• Change the name to Katsu

Version 1.0.0

Bump version to 1.0.0

Version 0.7.1

Changes

• Add more tests for mcode fhir and fhir ingestion
• Add json examples for tests

Version 0.7.0

Changes

• Add FHIR data ingestion support: currently supported resources are Patient, Observation, Condition, Specimen.
• Fix age schemas in phenopackets
• Update CHORD discovery APIs to match newest requirements
• Add experiment data type search and ingestion
• Separate resources model from phenopackets
  • Enforce stricter ID requirements and uniqueness
• Code refactoring and improvements
• Ingestion fixes and improvements
  • Be more flexible with some phenopackets data
  • Wrap ingestion actions in a single database transaction
• Remodel mCode app according to the latest mCODE version 1.0
• Add mCode FHIR data ingestion support. The ingestion was tested with the synthetic mcode fhir dataset https://confluence.hl7.org/display/COD/mCODE+Test+Data
• Add tox and flake8

Version 0.6.0

Changes

• Add Experiments app to support experiments metadata
• Add mCode app to handle more detailed oncology related metadata
• Add new mCode based fields to the Individual model
• Move validation from serializers level to models level
• Improve permissions
• Add more tests for search
• Update dependencies

Version 0.5.2

Changes

• Fix issue with searching diseases
• Change way in which we set the version number / package information

Version 0.5.1

Changes

• Fix ingestion of phenopackets which refer to existing objects
• Fix issue where phenopacket phenotypic features would not get ingested correctly
• Add tests
• Copy editing in documentation
• Fix Travis builds